<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:36:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578615" ref_strand="+" ref_description="SGN-U578615 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|121689|sp|P27057|GAST1_SOLLC (e_value=2e-51) Protein; (*ATH) AT3G02885.1 (e_value=2e-30) | Symbol: None | gibberellin-regulated protein 5 (GASA5) / gibberellin-responsive protein 5, identical to GASA5 (Arabidopsis thaliana) GI:1289320 | chr3:638111-639059 REVERSE | Aliases: None; (*SWP) sp|P27057|GAST1_SOLLC (e_value=1e-52) Protein GAST1 OS=Solanum lycopersicum GN=GAST1; ">
      <seq>ttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3772" stop="1826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3472" g_stop="3059" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="508" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2126" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="1013" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U578615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3472" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</genome_strand>
        <mrna_strand>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563907" ref_strand="+" ref_description="SGN-U563907 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|195650807|gb|ACG44871.1| (e_value=7e-16) esterase/lipase/thioesterase; (*ATH) AT3G30380.1 (e_value=2e-15) | Symbol: None | expressed protein, ; expression supported by MPSS | chr3:11976903-11979050 FORWARD | Aliases: T6J22.18; ">
      <seq>catattgtagaccccggtcgagcacagatcagagggagaaatctaggctaagcacagagaagagagagcctagaataagcacagatcaaagagaaaaatccagagctagcatagaccgcaaggagaagtcgagcaagagtgtggatctctcagataaggcaaatgataatacagaacaacaagagaaagctagaaaaagcattgatcgctttggcaacatgatgagatctgccgtattgtgcaatattgattgcttcaagccagtgggagcaaatgtctgaatgtctgatgaagatagcagttttccaagaatgtacgtgctccggagctcaactaaacatcccaatgcaaacactgtttgtagataccacggcgaaccaaaatggtcttagcatgatagttatcacacgggatcctacaatttggatgaattgggttagtaacaaggaaaaagtggcggggtttctctcgttgggttatgtgattatatgacccattacaaaatgttcttttaaaagttttatggcccatttgacaggagatctatttattattttaacacataggagatacagtgctataaagtacaatagatctttgtggtcgttctttttaattcaaattgtaactggcaatttatatcatttcctctcccgtgcctgtaccaaattgcaaatgttatgcttcaataccctgaagttgtgttgcctgtactaccggaagggaaccgaatcttctattgtggcttcatgaggcatctaatcctgatgaaaccacccaggtttgagtttggttttggagtaatcatagttgtcatcttccctccttcgacactctttatcatatcgatctttctcctttattatgattctacacacttcggtggactagactagttcacaaaatatttacaaagtgtatgttgttgtggtatggagtaccataaaccaaccaatgaaaagaactactcaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="20576" stop="17889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20276" g_stop="20069" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20068" i_stop="19936" i_length="133">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19935" g_stop="19850" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="294" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19849" i_stop="18871" i_length="979">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18870" g_stop="18189" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="976" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U563907" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20276" e_stop="20069"/>
          <exon e_start="19935" e_stop="19850"/>
          <exon e_start="18870" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCGGTTAGGTTACTACTGTCTAAGAGTTCTTCACTTTATTTATTTTTGTCTCTTTTGCCGCTATGTTAATTCAGAATAGCCTTATCTTGTATAAAATGTGATAACTGTTATGACTGATAGATGTTATTGGTGGCAGCTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAGGTTAGTCTAAAAGGGTAGTCTTTACCACCTTCAGCTGTTGGACACTTAGTTGTTTATTTGGTTTTATCGGTTTCATCTTTAATTCTTACCTTGTCCATATGTTCCTTTAAAACTAGGGATTTTCCTTCTTTCTTATGATTGATTTGCTTCATCATTTTGGAGTCTTAATGTCTATTTCCTTGTACTACATGGTTAGCCATTTGGTCAATGTTTGAAGTCCTTGTGCAGGTTTATTCATCTCAAATAACTGTAAATACTCCTATTTGTAATCTGTGGCTCTCTGTCTGAGTTCTTGATTGCTTAATTAATTTATCATCAACAAAAGGAAATCTATGGATGTCCTGAATTCTGTGGAAACTTTTGCATGTAACTGAAATGCACGAGCGTATGTTGCATTTTTTTTGTTCTGGAAACAATTCCATATATTTGATACCCGAGTAGGTCATGTTTGTGTCGTCTGAAGCTTGGTGCCTGCTGCTGAAACCTCTAAAGAATCACTAAAATTAAGTTCAATTGAGGTTCTTGTAGTTGCTATGTGTTTCTTTCCAACATTGTACAGTATAATGTTAGCACAAAAGCTGTTTGTTTATCAGAAAAATTTCCAAAATACTTGTTGAAATAAGTCATCCAGATAAAACCTTTAGAGCTTCGAACCTCAGGAGTAATATCTAGAGATTAGACAATAAGCTGCAGAAACGGCTGAAAGGATCTACTTTGTTGTAAGTCATCCACTGCTTTTGCTGGAAGCGTTTCAAGGAGATCCGATGTCTACCTGTTTAATCTCCCTTATGATGAGCTGATGCGAATATAAAGTAAAACTATATTTTGGTTGATTGTAGAATGTAATGCTTAATTTTGCCTTCTATATTTTATTTTATTGGAGACGGTAATGATTTTCATTTCAAGTCTTTGACGGACCAGAAAAAACCTAAATGTTTTGTCGAACTCTTTACACTTACAGTTATACGATTGCTTTCAGATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</genome_strand>
        <mrna_strand>CATATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCG.....................................................................................................................................CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587921" ref_strand="+" ref_description="SGN-U587921 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116787427|gb|ABK24504.1| (e_value=8e-66) unknown; (*ATH) AT3G30380.1 (e_value=2e-64) | Symbol: None | expressed protein, ; expression supported by MPSS | chr3:11976903-11979050 FORWARD | Aliases: T6J22.18; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=3e-23) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1; ">
      <seq>gggggcgtcgcggttgtcaagattgagggcagtggttcttcacagcccaatactctccggacttcgtgtaatgtatgcagtgaagcggacatattggtttgacatatataagaatattgacaaaataccattggttgaatgtcctgtcctcattattcacggcactgcagatgatgtagttgattgctcccatggcaaacaactttttgagctatctaagcagaaatatgagcctttgtgggttaaaactggtaaccattgtgatttggagctcttcccagagtacataatacatctgaagaagttcatatcagctattgagaaatcaactagttttagaaatgtatctgctcttagcataaaccaaatagataaacctcgaagcagtacagattgtagaccccggtcgagcacagatcagagggagaaatctaggctaagcacagagaagagagagcctagaataagcacagatcaaagagaaaaatccagagctagcatagaccgcaaggagaagtcgagcaagagtgtggatctctcagataaggcaaatgataatacagaacaacaagagaaagctagaaaagcattgatcggttagctttggcaacatgatgagatctgccgtattgtgcaatattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="22007" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21710" g_stop="21599" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21598" i_stop="21514" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21513" g_stop="21466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="160" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21465" i_stop="20506" i_length="960">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20505" g_stop="20064" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="601" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20063" i_stop="19936" i_length="128">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19935" g_stop="19893" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="644" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U587921" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21710" e_stop="21599"/>
          <exon e_start="21513" e_stop="21466"/>
          <exon e_start="20505" e_stop="20064"/>
          <exon e_start="19935" e_stop="19893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAGGTTAGCTTTATATTTCGAGCAGTTTGTGAAGTTGATTTGAAGGACTGGAGTTCATTGTGTAATTGGTTGCTTCTTTGTGGTGCAGAATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCACGTGAGTATTCATTTCTCTTTTCAATTGTCAACATTTACTAATACAGCTATAGTGATAAAACAGAGTGTTGCCAATAATTATAAAATAATTTACTGGTTAACTGTGATCTTTGGATATGAAATGGGGTCATTGGGATTATGCATATTGGGGTATATAAAATCCTTTTTGCCTGATTGTGTTTATGGAGGAACCAGAATAGAGGTTGGACTAAAATCTGATGTTCTTGGCAATTCTGCCTTCGGATTTCTCCAATTTAGCCTCCACTTACGACTCTCTACGAGTCTACTCCACCCCTGCCCCTGAAAATATTCACCACTTCTTTTTTTTCTTTTAGGATAAGTTTTGAGTTTTAGAATATTTATAATTTATTTCTTTTCTTAATAGAATTCTCTATCATAAGGTCTAGCCTTTCCATTTGTTGGGTTGTCGATACTCATTCCTCCATCCTATTTTGGTTGACCTTTCTATATTTAGTCTATCCCATCAATATGACCTCTTTTCCTTAAATTGCATAAGTCCACCACATTCAAATAGAATGTTACATCTTCCCTTTTTTTGTTAGTTTAATTGTATCTACATCTTTATTCCCTTTTTACATTTTCCAGCCATTTTGTTATAAGATGTCTTTGAAGACTCAAATGTAATATCTCAGCAAACCTTTTCCTCTAGAGATTTATGCAAGTCGATGCAAAATAGGACAGGGTAATAAGAGTAATTTGCCTTTCTAAGTCTTAAGATGATTCCGTACCTGTCATATTTTACAATCACAAATTCGCTGTTTGTAAACAAAAATACGAATACGGCGAAGATATATTGTTCTAGAGCACAGTATAGTATTTTTTTTCTGGATGTACCTTCTTTAGAGAGCAAACTATTCTTTTCTAGTGATATTATAATGGTAACTCTAGGATTCAGAAATGCTAGCTGGTATCTGATATGCATTTTTTCTGGGATTTCCAGGGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCTCTTAGCATAAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCGGTTAGGTTACTACTGTCTAAGAGTTCTTCACTTTATTTATTTTTGTCTCTTTTGCCGCTATGTTAATTCAGAATAGCCTTATCTTGTATAAAATGTGATAACTGTTATGACTGATAGATGTTATTGGTGGCAGCTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGAT</genome_strand>
        <mrna_strand>GGGGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAG.....................................................................................AATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCTCTTAGCATAAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAG-AAAAGCATTGATCGGTTAG................................................................................................................................CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563905" ref_strand="+" ref_description="SGN-U563905 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|116787427|gb|ABK24504.1| (e_value=3e-57) unknown; (*ATH) AT5G14390.1 (e_value=5e-57) | Symbol: None | expressed protein | chr5:4637315-4639759 REVERSE | Aliases: F18O22.180, F18O22_180; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=9e-28) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1; ">
      <seq>gctcttccttttcctttttctctcttcaaaccaaatctctacatttagccgtagaaatatacgtataattaatatattgattgccatttttcgccatcaacggattcgattcggaaccctagctagattttgggatcctacacttatacatagagagatatagtctactgttacttgtactctgtgtgtaaataattcatttctagattttggttcggaagccatgggagcggtgacatcgtccatggcagcaaagtttgcgttttttccgccgaatccgccgtcgtatggagtggtggtggaagaatcgacggggaaattgaagttgactgaagtggcggcgaaggaaaacgttgacgtattgaagctaccgacgaagaagggaacggagattgtcgcggtgtatattaggaatccggcggcgacgctgacggtgctttactcgcatggcaacgcggctgatctaggtcagatgtacgagttgtttgtcgaactaagtcaccttctccgggtcaatttgatgggatatgactattcagggtatgggcggtccaccggcaagcctagtgagcagaatacttacgccgacatagaagctgcatatagatgtcttgaagagacatatggggtgaaagaggaagatgtcatactatatggacagtcggttggtagtggacccacactggatctggcgtcgcggttgtcaagattgagggcagtggttcttcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="24039" stop="21365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23740" g_stop="23216" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="562" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21665" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="733" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U563905" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23740" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGC</genome_strand>
        <mrna_strand>GCTCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568569" ref_strand="+" ref_description="SGN-U568569 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gaggatactggtcaaaaatcaaaattagcaaaaactctttttcaaaaatcatataattttcattttttttttatatatttctgaaaattattactctgtagttcagtagtggaaaaaaaaacatggtaaccgcagttcacgaaagaggcaagaaccggagagatgataacctacaggatttggttttgaccggatagcgatatgccctgtaatttataccattgaggtaaccctttttctaccactttttatcatttttatcctcaaatctgtagtccctccaacaagattcgattttgttcgaatcggatctgtgaaacccagttggaaaaagattcgatccatacctcaaatgatcctttttgttgttggtgttttcatcaatcaaaattgagcatttctaagttcaatgaaaaactgtttaccattgtaaattcaacctaattggagttttgccttgattgaagttactttgggtttggtctggtgtgtgcagctcaattagaattggggttttgggggattaattgtacccacattcataggttctagctaagtggggatttctgggatttgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="28721" stop="29891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29021" g_stop="29591" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="581" r_length="563" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U568569" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29021" e_stop="29591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATGTAATTTTCATAATTTTTTTTTATATATTTCTGAAAATTATTACTACTACCTACTCTGTAGTTCAGTAGTGGAAAAAAAAAAACATGGTAA-CGCAATTCACGAAAGAGGCAAGAA-CGGAGAGATGATAACATACAGGATTTGGTTTTGA-CGGATAGCGATATGCGCTGTAATTTATA-CATTGAGGTAA-CCTTTTTCTACAACTTTTTATCATTTTTAGCCTCTAATCAGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAGATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCTATGAAGAACTGTTTA-CATTGTAAATTTAACCTAATTGGAGTTTTGCCTTGATTGAAGTTAGTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACATTCAGAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTCA</genome_strand>
        <mrna_strand>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATATAATTTTCAT--TTTTTTTTTATATATTTCTG-AAA--A-T--TA-T---TACTCTGTAGTTCAGTAGTGGAAAAAA-AA-ACATGGTAACCGCAGTTCACGAAAGAGGCAAGAACCGGAGAGATGATAACCTACAGGATTTGGTTTTGACCGGATAGCGATATGCCCTGTAATTTATACCATTGAGGTAACCCTTTTTCTACCACTTTTTATCATTTTTATCCTCAAATCTGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAAATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCAATGAAAAACTGTTTACCATTGTAAATTCAACCTAATTGGAGTTTTGCCTTGATTGAAGTTACTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACATTCATAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569505" ref_strand="+" ref_description="SGN-U569505 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ggttgaaatagcgnaatcttcggaatctgggtctgggttgttgaactcgacacaggtaaaaagtgggtctttgccagaagaggacagtattcacaggcaagttagcagctttggaagtagtggctccnggaatacaagcccattagggcgtataggatcaagaaatacaagcccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="29294" stop="30071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29594" g_stop="29771" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U569505" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29594" e_stop="29771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAATAGCGGAATCTTCGGAATCTGGGTCTGGGTTGTTGAACTCGACACAGGTAAAAAGTGGGTCTTTGCCAGAAGAGGACAGTATTCACAGGCAAGTTAGCAGCTTTGGAAGTAGTGGCTCCAGGAATACAAGCCCATTAGGGCGTATAGGATCAAGAAATACAAGCCCTTCA</genome_strand>
        <mrna_strand>GGTTGAAATAGCGNAATCTTCGGAATCTGGGTCTGGGTTGTTGAACTCGACACAGGTAAAAAGTGGGTCTTTGCCAGAAGAGGACAGTATTCACAGGCAAGTTAGCAGCTTTGGAAGTAGTGGCTCCNGGAATACAAGCCCATTAGGGCGTATAGGATCAAGAAATACAAGCCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585186" ref_strand="+" ref_description="SGN-U585186 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|90657537|gb|ABD96837.1| (e_value=8e-103) hypothetical; (*ATH) AT5G15710.1 (e_value=1e-103) | Symbol: None | F-box family protein, unusual floral organs protein UFO - Arabidopsis thaliana, PIR:S57710 | chr5:5122495-5124374 FORWARD | Aliases: F14F8.90, F14F8_90; (*SWP) sp|Q9LFV5|FK111_ARATH (e_value=9e-103) F-box/Kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710; ">
      <seq>ggcagttgcttatggttgttgatagaaaggataggtcatttaaagttattgccaccagcgatatttatggtgacaggtctttgccaacggaggtatatgattcaaagatcgacaaatggtcgcttcaccagacaatgcctgctgtaaacctttgttcctccaagatggcattttgtgattcaagactgtatttggaaactctctccccacttggtttgatgatgtatcggctggatacagggcagtgggaacacatccctgctaagtttccacgctcattgttggatgggtacctagttgctggaactcacaaacgcctatttttggttggaaggatagggctctatagtactcttcaaagtatgaggatatgggaactagatcactcaaaagtcgtctgggttgaaataagcaggatgcctccaagatattttcgtgcacttttaagactatctgctgaaagatttgaatgctttggacaggataacctaatatgcttcacgtcttggaaccaaggaaaaggccttctttatgatgtcgataagaaggtgtggtcttggattgcccggtgtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="29971" stop="31146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30271" g_stop="30846" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U585186" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30271" e_stop="30846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCGGGTGTGCTC</genome_strand>
        <mrna_strand>GGCAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCCGGTGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564463" ref_strand="+" ref_description="SGN-U564463 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|505146|dbj|BAA06538.1| (e_value=4e-92) protein-serine/threonine kinase [Nicotiana tabacum]; (*ATH) AT5G15730.1 (e_value=8e-57) | Symbol: None | serine/threonine protein kinase, putative, similar to protein-serine/threonine kinase (Nicotiana tabacum) gi:505146:dbj:BAA06538 | chr5:5130541-5133190 FORWARD | Aliases: F14F8.110, F14F8_110; (*SWP) sp|Q9C5S8|CRK5_ARATH (e_value=9e-19) Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5; ">
      <seq>agtagggctctgcttttctactactaataaaaaccaaaagtaaaccgcgtgcattggctttttacccattattcattctactgcgccatttccacaattgatagcacacccttttacggttttttttctctttttcttggttttgatggaaacccaatgagattcccctctgaagataagctccatcctagtctcacaacatggtcaagtttctttgttttgggaaaagattgaagaatggttcataaagctgatttagttattattggcatctgtgtcggtgtggcttttggaattctcattgcatcacttgttttctttggaattcggtggtacaaaaggcgtgttcatcttcagcaccatccaaatgagagatctctagcaactcttccaatacggacaaatggacttggaacaagcgttgattttagtgcatctctgtcaaattctgtagctattaagacatcaggatttcctgccacaaaaccactgcacagttggtggagtcacccttctaaagatcaatttgcttcagcatctggattaccaagatatttttataaggacattcaaaaagctacccaaaactttacaaccattctgggacagggctcttttggtccagtgtacaaagctacaatgcctgctggtggagtagttgcggtgaaagttcttgctactgactcaaaacaaggagagaaggagttctttactgaggtaacacttctaggtaggcttcatcatcggaatttagtaaatttggtgggttattgtgttgataaaggacatcgcatgttaatatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="40688" stop="44687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40988" g_stop="41162" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41163" i_stop="42209" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42210" g_stop="42597" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="563" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42598" i_stop="43171" i_length="574">
            <donor d_prob="0.149" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43172" g_stop="43325" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="717" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43326" i_stop="44298" i_length="973">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44299" g_stop="44387" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="806" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U564463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40988" e_stop="41162"/>
          <exon e_start="42210" e_stop="42597"/>
          <exon e_start="43172" e_stop="43325"/>
          <exon e_start="44299" e_stop="44387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGGGCTCTGCTTTTCTACTACTAATAAAAACCAAAAGTAAACCGCGTGCATTGGCTTTTTACCCATTATTCATTCTACTGCGCCATTTCCACAATTGATAGCACACCCTTTTACGGTTTTTTTTCTCTTTTTCTTGGTTTTGATGGAAACCCAATGAGATTCCCCTCTGAAGGTATGTTTTTTTTTTTTATAAAAATAAATCAAGATTCTTGATTTTCGTTTTCTGCGTATTTAGTTACATGTACTGCTAATTATGGTTTTTTTTTTGGGGGTGGTGGGGTGGAGTGGGGGGGGGGGAGTTTCTTGCTTTCGTCTGTTTGCTTGACGAGTGGACTGGGGTCTTCAAGTATTTTGATTGTGAATGAAAAAGAGTGATCTGATCTAGTTCTTTAACATAATCTTGAACTGCAGGCTTTCTTGAAAAAAGGAAAATTGATTTGGTTGGTTTGTGTAGTAATAAAGCAATAAGGGGAAGTTTTGAATCTTTGTTTTCACTAGATTTCAAGGTATTTTCCATATGATAAACTCAAGGGTATATTTTGGTGTCTTTCACTGTTAGGTGCCATTAATTAAGTTAGAATTTCAACACCAATCAATTTATTTGACGTGAACCCATATGGAGAAGAGGACTGGTATAATGCTTCAGGGGCTATGGTTTAGCGTAGCTGATTTTGTTTGTTCTTTCTTTTCATAGATTATGCTTTTCTTTCTTTCTGGTGAAGTATCGATTTGCTTACTAATATGACTGCACCCAAAGGGCTATGGCTGCGGATTCTCTGGTCATAAAAAGGAGTAATAGATTTGTGCACAATTTGTCTTTAGATGCTTTTGACATGTTTCTCCAGAGGTAGGGTATTCCCCTGCTGATTCTCCCTCGTCCCTAAACTTGCTGAATTCAATTGACAATGTATAACCTTTTTGTTCAAACATTTATAGAATTTATTTACCTTATCAAACGAAGTTCTTCTTCCTACTGTCAATATGAACAATGTACCTGGGGTGGGGGTGGGGGTGTTGTACTCCATTGGTGGTGCTTGTTGCTCCCTACTTGCCCAATTTAGTTGACAACATGTAAATATTTCTTCCTAACGCCAGCATGAATAATATCATCAAGAGCCATATGTTCTTCCAAGTTTAATGCTTTCTTACTTCAATATTTAATTTGTATACTGACTGGAGAAGGTGCACTATTCACTTCTATTTACCTTCATTACGACAGATAAGCTCCATCCTAGTCTCACAACATGGTCAAGTTTCTTTGTTTTGGGAAAAGATTGAAGAATGGTTCATAAAGCTGATTTAGTTATTATTGGCATCTGTGTCGGTGTGGCTTTTGGAATTCTCATTGCATCACTTGTTTTCTTTGGAATTCGGTGGTACAAAAGGCGTGTTCATCTTCAGCACCATCCAAATGAGAGATCTCTAGCAACTCTTCCAATACGGACAAATGGACTTGGAACAAGCGTTGATTTTAGTGCATCTCTGTCAAATTCTGTAGCTATTAAGACATCAGGATTTCCTGCCACAAAACCACTGCACAGTTGGTGGAGTCACCCTTCTAAAGATCAATTTGCTTCAGCATCTGGATTACCAAGATATTTTTATAAGTATGTTATCTACAACTCTAAAGGGATATTAATATCTTTGGTGGGGGAATCACCTTGTAGATGACTAAATTCAACAGCCTTTCATGTTATTGCATCCTAAATAGTAACTGAGGGAAACTCTTCAATCATGGTTCCTCTTCTTAATGTGTATAAATTAGCAACTTAAGAGCAATTTAAATCCATAAAACATACATAGATACCTTTTTATCCCGTGTATTTCAGAATTTTTTTTAATTGTCTCTATAATTTCTCTCTGGCATCGCCATCAGGCTTTGGTTCTTTTCTTAGCGGCAAGCTGATGATGCTTCGTTTGTCATCATATAAGCATGTTGAGAGATTATGTAATCCAGGTGTCAGAATGCAACGGAATATTTTTATACGTTTCTTTGTTTTGATCCTTCAAATACACATTGGATGTGTTAGGCAATCTGGTTTGAAGAATGCCTAGAAGTTGTAATTGGCAATTTAGCATTATTAAAATAAGCCGTTTATTGAATACATTTTTCTCTACGAATTCCATATTAAACTGCTTAACAATGCCGACTGCCGGTGCTGATCTTTTTTGGAACCCCAGGGACATTCAAAAAGCTACCCAAAACTTTACAACCATTCTGGGACAGGGCTCTTTTGGTCCAGTGTACAAAGCTACAATGCCTGCTGGTGGAGTAGTTGCGGTGAAAGTTCTTGCTACTGACTCAAAACAAGGAGAGAAGGAGTTCTTTACTGAGGTATGGATTGCTCGTTAACTTTTTCCCAGAGAAATAACAGTGTTGTCATTTCTATGAAGAATTATTCTGCTGCAGCATCCTTATTATATAGCCTCATCCAACAGTGAAAGCTAAAGTAGTGGCTGTAAACTGTATCTATATATCCGTTTTATTTGAGATTTATGTTCACGTAAATAAGAATTTTGTTCAGAGGTATACAATATTTCACATTAGATGCATAAGGGTACCCATAACTGGTTTATGAAACACATGGTTTACCCACTAATTGTCTTAAAACATTGGGTTGGATAGATTCTTTAAATATATTATAGCTAACCTTTGATAAATCTATTCCTCACTTGTCATCCATGTGTAGACCCTATAATTGGGTTATGTATGGAGGGTATTTAAAACCTGCAGTGCCTAATGTCACATGTAAAAGGACATCCAAGACTGTTTAAAGGTTCTGGATTAACTCTACTCATTACCTACCCCTCATCTTAGTATATTGGATGAGACAGTCAAAAAATTCTTTTACTATTGTTTATGAACTATATCAAATTTGTAAATTGGTCCTTATCAATAATTTAATCTATCATCTTGGTCAGTCTCAGAAAGCAGTTATACATCTGCCACCTTAATATAGAGATAAAAAGGGGCATCTCAAATGAACATTTTATCTTGTAAGGCGGAGATGATGTTACCGCACTTCAATGTAATTGGATGAGACTTGTATGCCAGGTGGGCTCTAAGATAATGGTGAAGCATATTTACTTAGGACATATTTAGGGAAAAATTCCTATTCACATGAGGCTAAAAAAAGGGCCAAAAAAGAAGCTAGCATATAGGTTCTAAAGGTCTTAAGAGGTTCTTTAAGCATATCGATTTCCAACTCTCAAACAGTACAATAATGCATCTTATGCTCCTCTATTCATATTTCTCATGAAGGTGAATGTTCTCGATAAAGTTTTGATTTCGATTGGTGTTTGTGCAGGTAACACTTCTAGGTAGGCTTCATCATCGGAATTTAGTAAATTTGGTGGGTTATTGTGTTGATAAAGGACATCGCATGTTAATATATGA</genome_strand>
        <mrna_strand>AGTAGGGCTCTGCTTTTCTACTACTAATAAAAACCAAAAGTAAACCGCGTGCATTGGCTTTTTACCCATTATTCATTCTACTGCGCCATTTCCACAATTGATAGCACACCCTTTTACGGTTTTTTTTCTCTTTTTCTTGGTTTTGATGGAAACCCAATGAGATTCCCCTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCTCCATCCTAGTCTCACAACATGGTCAAGTTTCTTTGTTTTGGGAAAAGATTGAAGAATGGTTCATAAAGCTGATTTAGTTATTATTGGCATCTGTGTCGGTGTGGCTTTTGGAATTCTCATTGCATCACTTGTTTTCTTTGGAATTCGGTGGTACAAAAGGCGTGTTCATCTTCAGCACCATCCAAATGAGAGATCTCTAGCAACTCTTCCAATACGGACAAATGGACTTGGAACAAGCGTTGATTTTAGTGCATCTCTGTCAAATTCTGTAGCTATTAAGACATCAGGATTTCCTGCCACAAAACCACTGCACAGTTGGTGGAGTCACCCTTCTAAAGATCAATTTGCTTCAGCATCTGGATTACCAAGATATTTTTATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTCAAAAAGCTACCCAAAACTTTACAACCATTCTGGGACAGGGCTCTTTTGGTCCAGTGTACAAAGCTACAATGCCTGCTGGTGGAGTAGTTGCGGTGAAAGTTCTTGCTACTGACTCAAAACAAGGAGAGAAGGAGTTCTTTACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTCTAGGTAGGCTTCATCATCGGAATTTAGTAAATTTGGTGGGTTATTGTGTTGATAAAGGACATCGCATGTTAATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603164" ref_strand="+" ref_description="SGN-U603164 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gatcgcaggtacgcgggaggatagaacatcaacaggttgaattgagaaacatggccagtattaatgaaagagaagttgaatgacttttcattcacaaccatgaacactttgtttcaattcttgagcttattttttgcagcataaaagatataggaaagacatcacgctgagtgttggatcaacaacttggcatgaaattggtgtttttggatatgatttaagttatataaactaaccatgtaaagaatttttatatcggaaaatttaagttgacaagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="45567" stop="46433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45871" g_stop="46133" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="282" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U603164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45871" e_stop="46133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGCATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCAATTCTTGAGCTTATTTTTTGCAGCATAAAAGATATAGGAAAGACATCACGCTGAGTGTTGGATCAACAACTTGGCATGAAATTGGTGTTTTTGGATATGATTTAAGTTATATAAACTAACCATGTAAAGAATTTTTATATCGGAAAATTTAAGTTGACAAGATTTT</genome_strand>
        <mrna_strand>GATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGTATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCAATTCTTGAGCTTATTTTTTGCAGCATAAAAGATATAGGAAAGACATCACGCTGAGTGTTGGATCAACAACTTGGCATGAAATTGGTGTTTTTGGATATGATTTAAGTTATATAAACTAACCATGTAAAGAATTTTTATATCGGAAAATTTAAGTTGACAAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570239" ref_strand="+" ref_description="SGN-U570239 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157341313|emb|CAO49220.1| (e_value=2e-82) unnamed; (*ATH) AT5G15750.1 (e_value=3e-77) | Symbol: None | RNA-binding S4 domain-containing protein, 40S RIBOSOMAL PROTEINs - different species | chr5:5141194-5142861 FORWARD | Aliases: F14F8.130, F14F8_130; (*SWP) sp|P32899|IMP3_YEAST (e_value=7e-49) U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3; ">
      <seq>aattgtgtcccctaccgattgaataatcttcttcttccttaggttaacctaattgtgtccccttcgccttacagagctcgaaatcggtagccatagtcaatcaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatggaagagagaaggaggtcacagagaaggtgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcaggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagaaatgaccgattctcttctagagaagctgtacaacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggatttcatcacttgggtagatacatctaagattaggagaaaggtcttggagtacaacgatcagctagacgattatgatgcaatgaattgatgactggtgacagatttatgaagcatttgagaattgattgaatgagagaaatggaacacattcttcttggccattgttggagttccctggcaggtttacctcctgctagtttgccttgtactacctcccctctacatttttgctcctgtagactgttgaaaatgtacacattatattcaacagtaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46502" stop="49465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46802" g_stop="47040" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="347" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49165" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="845" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U570239" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46802" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGTCCCCTACCGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCTCCTGTAGACTGTTGAAGATGTACACATTATATTCAACAGTAAAGTTT</genome_strand>
        <mrna_strand>AATTGTGTCCCCTACCGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCTCCTGTAGACTGTTGAAAATGTACACATTATATTCAACAGTAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580344" ref_strand="+" ref_description="SGN-U580344 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>cgatttttgatgatgttgaaagttgatatatacgtgtctgtttggcttcgattcaaaagtttttggaagtttgcaaagattagactctatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctagaaaaagtaacatcgatggtcttacctttcttagttttattgatatacttttactgtttcgtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatcctgtatttgaatcactgtttcattcaagatcattatgttcttctttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttgacacagcatgttctctccgggttgaatataatatggatgatttgtacatttatggagaaatcctcagcattctccaacaatgaatggaaggagcgaaaaccacactggaccaggatcttttatgtagggatattcttaagtggtcaggcaattaagttgagttacatataaactctacacatgggttaattcctgagactggtcattttcttttccttttgcagtatccaatttcaaagactatcaattgagtttttaatttaagatcagaatattgtataaagcaatcaaaattgtggaattctcaagactcatttttttgaaggttaattttttcattcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51272" stop="53200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51571" g_stop="52068" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52900" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="730" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U580344" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51571" e_stop="52068"/>
          <exon e_start="52670" e_stop="52900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAA-ATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</genome_strand>
        <mrna_strand>CGATTTTTGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTGCAGTATCCAATTTCAAAGACTATCAATTGAGTTTTTAATTTAAGATCAGAATATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592826" ref_strand="-" ref_description="SGN-U592826 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atcagtgtttcattcaagatcattttcttgttttttgttgaaatgaatatacctttcttcattgaatttatttatcatgttatctgtgtaagtgggttgacacagcatgttctctcccgggtagaatataatatgggtgatctgtacatttatggagaaatcctcagctttgtccaccaaggaatggaaggagcgaaaaccacactggaccaggattttttatgtagggatatttttaagtggtcaggcaattaagttgagttacatataaactatacacatgggttaattcctgagactggtcattttcttttccttttacagtatccaatttcaatgactatcaattgagtttttaatttaagatcagaaattgtataaagcaatcaaaattgtggaattctcaagaatcatttttttgaaggttaatcttttcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51558" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51858" g_stop="52068" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52898" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="442" r_length="229" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U592826" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592826" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51858" e_stop="52068"/>
          <exon e_start="52670" e_stop="52898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTAT-TGTTTAAGTTGGTTGACACAGCATGTTCTCT-CCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTT</genome_strand>
        <mrna_strand>ATCAGTGTTTCATTCAAGATCATTTTCTTGTTTTTTGTTGAAATGAATATACCTTTCTTCATTGAATTTATTTATCATGTTATCTGTGTAAGTGGGTTGACACAGCATGTTCTCTCCCGGGTAGAATATAATATGGGTGATCTGTACATTTATGGAGAAATCCTCAGCTTTGTCCACCAAGGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTTATGTAGGGATATTTTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTATACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATTTCAATGACTATCAATTGAGTTTTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGAATCATTTTTTTGAAGGTTAATCTTTTCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576741" ref_strand="+" ref_description="SGN-U576741 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157341307|emb|CAO49214.1| (e_value=2e-81) unnamed; (*ATH) AT3G02290.1 (e_value=4e-68) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains zinc finger motif, C3HC4 type (RING finger) | chr3:458443-461026 FORWARD | Aliases: F14P3.6, F14P3_6; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=4e-67) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; ">
      <seq>cagtcattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatttgtctgccaaaatcactggatctgatactattttatatctgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93234" stop="99292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93531" g_stop="93635" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="444" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="871" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96144" g_stop="96253" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="981" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98613" g_stop="98992" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1361" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U576741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93531" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95842"/>
          <exon e_start="96144" e_stop="96253"/>
          <exon e_start="98613" e_stop="98992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</genome_strand>
        <mrna_strand>CAGTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576742" ref_strand="+" ref_description="SGN-U576742 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341307|emb|CAO49214.1| (e_value=3e-35) unnamed; (*ATH) AT5G15790.2 (e_value=2e-28) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:5148765-5151412 FORWARD | Aliases: None; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-27) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; ">
      <seq>atcactgtattttacgctcacttttatctatctcctactgattggagctttaatcgattgtaaactgttatgaactgaaatgggtttcatcggaatcggttgatgcagagattttcacggtaaagttctgttttttagggatcgataatgcaatttcttgatttgaattgtagaaatcttgattttcttgattcttgatcactgttggtgttgttttgttgatcattttttgttttaattttttcttgttttcggtttagctgtgtctttaacactgttgtatgagagttccctttgcttcttattaaagaaattaagatgatgataacaatttgagaattaagttctcacaagtggtgtttaagattaggaattaagaataattccctgcaaatttatagtgtccatctatttatgtttttttattttattgcaatttgttgagtgttaggcagctggattatgccaaagaagctgtttataaatttgaatttaatgtgattttgcttgctcacatatcaaatttaaactgtaagcttatttatttcattcttcggaagctgtaattttcttgtgtcactcgaggtagaccatccatgtatttctccatcaatgcatatatgatacgcaatctccacatgtacaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93366" stop="95990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93666" g_stop="94650" g_length="985"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="985" r_length="985" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95470" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1040" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95471" i_stop="95540" i_length="70">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95541" g_stop="95690" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1190" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U576742" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93666" e_stop="94650"/>
          <exon e_start="95416" e_stop="95470"/>
          <exon e_start="95541" e_stop="95690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</genome_strand>
        <mrna_strand>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATACGCAATCTCCACATGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG......................................................................ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564793" ref_strand="+" ref_description="SGN-U564793 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|157341306|emb|CAO49213.1| (e_value=3e-87) unnamed; (*ATH) AT5G38900.1 (e_value=3e-76) | Symbol: None | DSBA oxidoreductase family protein, contains Pfam profile: PF01323 DSBA-like thioredoxin domain | chr5:15590735-15592848 REVERSE | Aliases: K15E6.80, K15E6_80; ">
      <seq>acatggtgtatattttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102241" stop="98817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101941" g_stop="101740" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="350" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="470" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="514" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="640" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="725" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="782" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99437" g_stop="99117" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1103" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U564793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1103</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101941" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</genome_strand>
        <mrna_strand>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596988" ref_strand="+" ref_description="SGN-U596988 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtatatttccacagcttctatccaatagccaactggagagtctgtcttctatttttcttgctcgtttcctttctcgcagaacattcactgaggggtgtgtgggtgtgggtgtaagtagtactgctggagaactgctaaagacagtagtaaagcagcccatctcaattatatctgtacttggcattatgactagtattttgtcctgctccttgatggacctagtcattcatatcacatgttacctaattttcagtacctcatgctcactactactactacttccccaatcccccctgcaggttggctcgtcagtaggatagatcacaattttataaatatttaaagtaaattttgttggttttgggtatgtgaaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="100346" stop="98911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100047" g_stop="99530" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99437" g_stop="99211" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="745" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U596988" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100047" e_stop="99530"/>
          <exon e_start="99437" e_stop="99211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</genome_strand>
        <mrna_strand>GGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565340" ref_strand="+" ref_description="SGN-U565340 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341305|emb|CAO49212.1| (e_value=4e-64) unnamed; (*ATH) AT3G02300.1 (e_value=3e-64)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q9VR91|HERC2_DROME (e_value=2e-12) Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2; ">
      <seq>tnacggccggggganaantattagtaacaaaatttggacattagagtattttaaggtctcaaagaatcagttgaggtaaaacggtcggccaggaattggcagtcctgtcctccctccatccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatcgtaagtttttcactgcttacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcatagtttttttttgtaatttatggttcatttttgttgatagtgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaaganaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcanaaccacgtgaaaacgatggtagcatgtcagctcggagactttggggtttggggacagaaccagggatcnaattacccacgactcnttnnggggngncttttnnnnctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103199" stop="105290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103502" g_stop="104071" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="585" r_length="570" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="780" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105075" g_stop="105102" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="808" r_length="28" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U565340" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103502" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTT-GGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGG</genome_strand>
        <mrna_strand>AANTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGANAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCANAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGGTTTGGGGACAGAACCAG.....................................................................................GGATCNAATTACCCACGACTCNTTNNGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565339" ref_strand="+" ref_description="SGN-U565339 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341305|emb|CAO49212.1| (e_value=1e-91) unnamed; (*ATH) AT3G02300.1 (e_value=3e-86)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q6P798|RCBT2_RAT (e_value=5e-16) RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2; ">
      <seq>ggtcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaagaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcaactcggagactttgggtttggggacagaaccagggaaccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctattcagaaagaaggggtntactacaaagcttgggggctataatgaatatggtcagcttggcagangtgtnacatcagaangcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103288" stop="106037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="104071" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="508" r_length="478" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="702" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="750" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="828" r_length="78" r_score="0.863"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="0.78"/>
            <acceptor a_prob="0.961" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105689" g_stop="105737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="878" r_length="50" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U565339" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-------AT-TGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTA-TCAG-AAGAA-GGGT-TACTAC-AAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAG-GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCT</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAAGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAACTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGAACCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATTCAGAAAGAAGGGGTNTACTACAAAGCTTGGG........................................................................................................................................................................................................................GGCTATAATGAATATGGTCAGCTTGGCAGANGTGTNACATCAGAANGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565338" ref_strand="+" ref_description="SGN-U565338 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147791382|emb|CAN65617.1| (e_value=1e-142) hypothetical; (*ATH) AT3G02300.1 (e_value=7e-137)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q15034|HERC3_HUMAN (e_value=5e-29) Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3; ">
      <seq>gatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgccttgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttgggttgtccagatggtgtgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103309" stop="107976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103608" g_stop="103689" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="346" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="540" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="588" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="661" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105689" g_stop="105860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="833" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107377" g_stop="107676" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="1134" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U565338" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1133</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103608" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105860"/>
          <exon e_start="107377" e_stop="107676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCC-TGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACT</genome_strand>
        <mrna_strand>GATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGGTTGTCCAGATGGTGTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565337" ref_strand="-" ref_description="SGN-U565337 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147791382|emb|CAN65617.1| (e_value=3e-86) hypothetical; (*ATH) AT3G02300.1 (e_value=1e-74)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; ">
      <seq>attctgatgagccctnactngtnagattanncanggtcatgcgngagtaccatactgcagctatatcagagaagggcgagntctatacgngggantggggagcgtgnnacnacttgncnattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgttccagatggcaggcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattcaaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="105500" stop="108719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105772" g_stop="105860" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107377" g_stop="107808" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="513" r_length="431" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="705" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108202" g_stop="108426" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="928" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-U565337" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105772" e_stop="105860"/>
          <exon e_start="107377" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAA</genome_strand>
        <mrna_strand>ATTC-TGATG-AG-CCCT-NACTNGT-NAGATTANNCANG-GTCATGC-GNGAGTACCATACTGCAGCTATATCAGAGAAGGGCGAGNT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACG-NGGGANTGGGGAGCGTGNNACNACTTGNCNATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGCAGGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTCAA--ATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583377" ref_strand="+" ref_description="SGN-U583377 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=1e-96) MADS-box; (*ATH) AT1G69120.1 (e_value=1e-68) | Symbol: None | floral homeotic protein APETALA1 (AP1) / agamous-like MADS box protein (AGL7), identical to SP:P35631 Floral homeotic protein APETALA1 (AGL7 protein) {Arabidopsis thaliana} | chr1:25985999-25989919 REVERSE | Aliases: F4N2.9, F4N2_9; (*SWP) sp|Q41276|AP1_SINAL (e_value=3e-68) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1; ">
      <seq>gtctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgtttccatcacattctcaccaccaacttcctaaccttacaattgggggggcttttggaggaatgaacagagatggatcgggtcaggctcatcactatccgggttcaaataacaataataataattcctcattgataccgccatggatgctccgccacgtcagcaacgaaggatgaaataatattccggagagtataattaattaattgtatatgttttgttccaaacaatattaatcaactttcctgtttgtgatgtataattagcttaagctaataaaacttttcatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113602" stop="108192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113303" g_stop="113044" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="339" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="404" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="546" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109047" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="588" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108960" g_stop="108854" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="695" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108853" i_stop="108739" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108738" g_stop="108492" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="942" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U583377" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113303" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109047"/>
          <exon e_start="108960" e_stop="108854"/>
          <exon e_start="108738" e_stop="108492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGGGTACGTACGAATAAATTTTACACTATCAGATTACCTAAAAAACATAATCATTGCGACATATAATTGCTTAACAACAAAATGTTTTCTGTATCCATATATTATATGTGTTGATCAGGGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</genome_strand>
        <mrna_strand>GTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG...................................................................................................................GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583379" ref_strand="+" ref_description="SGN-U583379 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=2e-48) MADS-box; (*ATH) AT1G69120.1 (e_value=1e-35) | Symbol: None | floral homeotic protein APETALA1 (AP1) / agamous-like MADS box protein (AGL7), identical to SP:P35631 Floral homeotic protein APETALA1 (AGL7 protein) {Arabidopsis thaliana} | chr1:25985999-25989919 REVERSE | Aliases: F4N2.9, F4N2_9; (*SWP) sp|Q41276|AP1_SINAL (e_value=4e-35) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1; ">
      <seq>ggaaagcaagatgatgtttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctaagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtaaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttactggcttataattttttttttgtttattttttgattttagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="111297" stop="108759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110997" g_stop="110405" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="658" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="758" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="800" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109088" g_stop="109059" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="830" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U583379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110997" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTG</genome_strand>
        <mrna_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581481" ref_strand="+" ref_description="SGN-U581481 Tomato 200607#2 [89 ESTs aligned] (*GB) gi|17432174|emb|CAC83066.1| (e_value=6e-123) MADS-box protein [Lycopersicon esculentum]; (*ATH) AT5G15800.1 (e_value=8e-77)  Symbol: None | developmental protein SEPALLATA1 / floral homeotic protein (AGL2) (SEP1), identical to developmental protein SEPALLATA1 / floral homeotic protein (AGL2 / SEP1) SP:P29382 from (Arabidopsis thaliana) | chr5:5151080-5154156 REVERSE | Ali... ; (*SWP) sp|P29382|SEP1_ARATH (e_value=7e-76) Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1; ">
      <seq>tcccggcacgaggctaaagctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127499" stop="122335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127191" g_stop="126672" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="532" r_length="520" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="611" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="776" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="818" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="860" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1000" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122635" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1001" r_stop="1325" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-U581481" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1313</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127191" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</genome_strand>
        <mrna_strand>GCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3472" PGL_stop="2126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3472" e_stop="3059"/>
            <exon e_start="2940" e_stop="2881"/>
            <exon e_start="2790" e_stop="2757"/>
            <exon e_start="2630" e_stop="2126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3472" e_stop="3059" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2940" e_stop="2881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2790" e_stop="2757" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2630" e_stop="2126" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG : GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG : TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG : ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</gDNA_template>
            <first_frame> L  D  Y  A  M  Y  G  F  *  T  E  L  *  E  K  N  *  L  E  T  N  K  K  G  K  K  L  L  T  L  C  E  I  E  I  K  C  S  G  *  *  F  G  P  K  I  L  M  Q  L  I  D  F  G  P  N  Y  R  C  C  V  *  I  Y  S  I  L  H  R  G  Y  C  W  S  V  T  T  A  S  A  R  L  K  R  L  T  T  *  E  D  P  S  L  *  I  E  V  D  S  L  K  A  L  H  T  S  L  P  L  L  A  S  H  K  I  T  T  M  A  G  K  M  S  I  V  L  F  V  L  L  V  V  F  L  T  Q  N  Q  :  V  S  R  A  N  I  M  R  D  E  Q  Q  Q  Q  Q  R  N  N  Q  L  :  Y  G  V  S  E  G  R  L  H  P  Q   : D  C  Q  P  K  C  T  Y  R  C  S  K  T  S  Y  K  K  P  C  M  F  F  C  Q  K  C  C  A  K  C  L  C  V  P  A  G  T  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  K  R  G  G  P  K  C  P  *  S  S  I  L  Y  *  N  V  T  A  D  T  Q  L  L  S  N  L  V  V  L  I  N  *  S  T  L  V  V  S  S  G  V  L  A  S  N  V  R  S  Q  L  Y  R  R  R  L  G  *  L  Q  V  Q  *  H  G  Y  D  Y  A  A  F  F  V  R  L  I  L  Y  Y  Y  Y  D  Y  I  L  S  D  I  Y  W  C  T  I  R  I  I  E  C  S  S  H  L  I  Q  G  Q  L  G  V  *  M  G  Y  Y  T  K   </first_frame>
            <second_frame>  *  I  M  L  C  M  A  F  E  L  N  Y  E  K  K  I  D  L  K  R  T  K  R  A  K  N  F  L  H  Y  A  K  L  K  *  N  A  P  V  N  S  L  V  Q  K  Y  *  C  S  *  *  I  L  D  Q  T  I  D  A  V  Y  R  F  I  Q  F  C  I  G  D  T  V  G  V  *  Q  Q  Q  V  L  G  *  R  D  *  P  L  E  K  I  P  L  Y  K  *  K  S  I  L  S  K  L  Y  T  L  H  F  L  S  *  L  H  T  K  L  L  Q  W  L  G  K  *  A  L  S  C  L  F  F  W  W  F  S  *  L  K  I  R :   F  Q  G  P  T  L  C  V  M  S  S  S  N  N  R  E  I  T  N  C :   M  V  L  V  R  E  D  S  I  L  K  :  I  V  N  Q  N  A  R  T  G  V  Q  R  H  R  I  R  S  R  V  C  F  S  A  R  N  A  V  Q  S  V  C  V  F  L  L  V  P  M  A  I  S  K  V  A  L  A  T  I  T  G  R  P  K  E  V  A  Q  S  A  H  D  H  P  Y  C  I  K  M  *  L  Q  T  P  N  F  C  Q  I  *  *  Y  *  L  I  N  Q  H  L  L  S  Q  V  V  Y  *  L  V  M  L  G  P  N  Y  I  E  E  D  W  A  S  Y  K  Y  N  S  M  V  M  I  M  Q  L  F  L  *  D  L  F  Y  I  I  I  M  I  I  S  *  V  I  F  I  G  V  P  *  E  L  *  N  V  Q  V  I  *  S  K  A  N  L  A  F  E  W  A  I  I  L  K  </second_frame>
            <third_frame>   R  L  C  Y  V  W  L  L  N  *  T  M  R  K  K  L  T  *  N  E  Q  K  G  Q  K  T  S  Y  T  M  R  N  *  N  K  M  L  R  L  I  V  W  S  K  N  I  D  A  V  N  R  F  W  T  K  L  S  M  L  C  I  D  L  F  N  F  A  *  G  I  L  L  E  C  D  N  S  K  C  *  A  K  E  I  N  H  L  R  R  S  L  S  I  N  R  S  R  F  S  Q  S  S  T  H  F  T  S  S  L  S  F  T  Q  N  Y  Y  N  G  W  E  N  E  H  C  L  V  C  S  F  G  G  F  P  D  S  K  S   : G  F  K  G  Q  H  Y  A  *  *  A  A  A  T  T  E  K  *  P  T   : V  W  C  *  *  G  K  T  P  S  S  R :   L  S  T  K  M  H  V  P  V  F  K  D  I  V  *  E  A  V  Y  V  F  L  P  E  M  L  C  K  V  F  V  C  S  C  W  Y  L  W  Q  *  A  K  L  P  L  L  Q  *  L  E  D  Q  K  R  W  P  K  V  P  M  I  I  H  I  V  L  K  C  D  C  R  H  P  T  S  V  K  S  S  S  I  N  *  L  I  N  T  C  C  L  K  W  C  I  S  *  *  C  *  V  P  I  I  *  K  K  I  G  L  A  T  S  T  I  A  W  L  *  L  C  S  F  F  C  E  T  Y  F  I  L  L  L  *  L  Y  L  K  *  Y  L  L  V  Y  H  K  N  Y  R  M  F  K  S  S  N  P  R  P  T  W  R  L  N  G  L  L  Y  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3190" stop="3059"/>
                    <exon start="2940" stop="2881"/>
                    <exon start="2790" stop="2757"/>
                    <exon start="2630" stop="2449"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVDSLKALHTSLPLLASHKITTMAGKMSIVLFVLLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23740" PGL_stop="18189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23740" e_stop="23216"/>
            <exon e_start="21959" e_stop="21923"/>
            <exon e_start="21835" e_stop="21599"/>
            <exon e_start="21513" e_stop="21466"/>
            <exon e_start="20505" e_stop="20064"/>
            <exon e_start="19935" e_stop="19893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="0.998"/>
          <exon-intron don_prob="0.948" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.976" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="23740" e_stop="23216" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21959" e_stop="21923" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.962">
            <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21835" e_stop="21599" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21598" i_stop="21514" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21513" e_stop="21466" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21465" i_stop="20506" i_length="960"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="20505" e_stop="20064" e_length="442"/>
          </exon>
          <intron i_serial="5" don_prob="0.813" acc_prob="0.976">
            <gDNA_intron_boundary i_start="20063" i_stop="19936" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19935" e_stop="19893" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23740" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21710" stop="21599"/>
              <exon start="21513" stop="21466"/>
              <exon start="20505" stop="20064"/>
              <exon start="19935" stop="19893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG : ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG : CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAG : AATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCAC : GGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCTCTTAGCATAAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCGGTTAG : CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGAT</gDNA_template>
            <first_frame> P  L  P  F  P  F  S  L  F  K  P  N  L  Y  I  *  P  *  K  Y  T  Y  N  *  Y  I  D  C  H  F  S  P  S  T  D  S  I  R  N  P  S  *  I  L  G  S  Y  T  Y  T  *  R  D  I  V  Y  C  Y  L  Y  S  V  C  K  *  F  I  S  R  F  W  F  G  S  H  G  S  G  D  I  V  H  G  S  K  V  C  V  F  S  A  E  S  A  V  V  W  S  G  G  G  R  I  D  G  E  I  E  V  D  *  S  G  G  E  G  K  R  *  R  I  E  A  T  D  E  E  G  N  G  D  C  R  G  V  Y  *  E  S  G  G  D  A  D  G  A  L  L  A  W  Q  R  G  *  S  R  S  D  V  R  V  V  C  R  T  K  S  P  S  P  G  Q  F  D  G  :  I  *  L  F  R  V  W  A  V  H  R  Q   : A  *  *  A  E  Y  L  R  R  H  R  S  C  I  *  M  S  *  R  D  I  W  G  E  R  G  R  C  H  T  I  W  T  V  G  W  *  W  T  H  T  G  S  G  V  A  V  V  K  I  E  G  S  G  S  S  Q  P  N  T  L  R  T  S  C  N  V  C  S  E  A  D  I  L  V  *  H  I  *   : E  Y  *  Q  N  T  I  G  *  M  S  C  P  H  Y  S   : R  H  C  R  *  C  S  *  L  L  P  W  Q  T  T  F  *  A  I  *  A  E  I  *  A  F  V  G  *  N  W  *  P  L  *  F  G  A  L  P  R  V  H  N  T  S  E  E  V  H  I  S  Y  *  E  I  N  *  F  *  K  C  I  C  S  *  H  K  P  N  R  *  T  S  K  Q  Y  R  L  *  T  P  V  E  H  R  S  E  G  E  I  *  A  K  H  R  E  E  R  A  *  N  K  H  R  S  K  R  K  I  Q  S  *  H  R  P  Q  G  E  V  E  Q  E  C  G  S  L  R  *  G  K  *  *  Y  R  T  T  R  E  S  *  K  K  H  *  S  V  S :   F  G  N  M  M  R  S  A  V  L  C  N  I  D </first_frame>
            <second_frame>  L  F  L  F  L  F  L  S  S  N  Q  I  S  T  F  S  R  R  N  I  R  I  I  N  I  L  I  A  I  F  R  H  Q  R  I  R  F  G  T  L  A  R  F  W  D  P  T  L  I  H  R  E  I  *  S  T  V  T  C  T  L  C  V  N  N  S  F  L  D  F  G  S  E  A  M  G  A  V  T  S  S  M  A  A  K  F  A  F  F  P  P  N  P  P  S  Y  G  V  V  V  E  E  S  T  G  K  L  K  L  T  E  V  A  A  K  E  N  V  D  V  L  K  L  P  T  K  K  G  T  E  I  V  A  V  Y  I  R  N  P  A  A  T  L  T  V  L  Y  S  H  G  N  A  A  D  L  G  Q  M  Y  E  L  F  V  E  L  S  H  L  L  R  V  N  L  M  G :   Y  D  Y  S  G  Y  G  R  S  T  G  K  :  P  S  E  Q  N  T  Y  A  D  I  E  A  A  Y  R  C  L  E  E  T  Y  G  V  K  E  E  D  V  I  L  Y  G  Q  S  V  G  S  G  P  T  L  D  L  A  S  R  L  S  R  L  R  A  V  V  L  H  S  P  I  L  S  G  L  R  V  M  Y  A  V  K  R  T  Y  W  F  D  I  Y  K  :  N  I  D  K  I  P  L  V  E  C  P  V  L  I  I  H  :  G  T  A  D  D  V  V  D  C  S  H  G  K  Q  L  F  E  L  S  K  Q  K  Y  E  P  L  W  V  K  T  G  N  H  C  D  L  E  L  F  P  E  Y  I  I  H  L  K  K  F  I  S  A  I  E  K  S  T  S  F  R  N  V  S  A  L  S  I  N  Q  I  D  K  P  R  S  S  T  D  C  R  P  R  S  S  T  D  Q  R  E  K  S  R  L  S  T  E  K  R  E  P  R  I  S  T  D  Q  R  E  K  S  R  A  S  I  D  R  K  E  K  S  S  K  S  V  D  L  S  D  K  A  N  D  N  T  E  Q  Q  E  K  A  R  K  S  I  D  R  L   : A  L  A  T  *  *  D  L  P  Y  C  A  I  L   </second_frame>
            <third_frame>   S  S  F  S  F  F  S  L  Q  T  K  S  L  H  L  A  V  E  I  Y  V  *  L  I  Y  *  L  P  F  F  A  I  N  G  F  D  S  E  P  *  L  D  F  G  I  L  H  L  Y  I  E  R  Y  S  L  L  L  L  V  L  C  V  *  I  I  H  F  *  I  L  V  R  K  P  W  E  R  *  H  R  P  W  Q  Q  S  L  R  F  F  R  R  I  R  R  R  M  E  W  W  W  K  N  R  R  G  N  *  S  *  L  K  W  R  R  R  K  T  L  T  Y  *  S  Y  R  R  R  R  E  R  R  L  S  R  C  I  L  G  I  R  R  R  R  *  R  C  F  T  R  M  A  T  R  L  I  *  V  R  C  T  S  C  L  S  N  *  V  T  F  S  G  S  I  *  W   : D  M  T  I  Q  G  M  G  G  P  P  A  S :   L  V  S  R  I  L  T  P  T  *  K  L  H  I  D  V  L  K  R  H  M  G  *  K  R  K  M  S  Y  Y  M  D  S  R  L  V  V  D  P  H  W  I  W  R  R  G  C  Q  D  *  G  Q  W  F  F  T  A  Q  Y  S  P  D  F  V  *  C  M  Q  *  S  G  H  I  G  L  T  Y  I  R :   I  L  T  K  Y  H  W  L  N  V  L  S  S  L  F  T :   A  L  Q  M  M  *  L  I  A  P  M  A  N  N  F  L  S  Y  L  S  R  N  M  S  L  C  G  L  K  L  V  T  I  V  I  W  S  S  S  Q  S  T  *  Y  I  *  R  S  S  Y  Q  L  L  R  N  Q  L  V  L  E  M  Y  L  L  L  A  *  T  K  *  I  N  L  E  A  V  Q  I  V  D  P  G  R  A  Q  I  R  G  R  N  L  G  *  A  Q  R  R  E  S  L  E  *  A  Q  I  K  E  K  N  P  E  L  A  *  T  A  R  R  S  R  A  R  V  W  I  S  Q  I  R  Q  M  I  I  Q  N  N  K  R  K  L  E  K  A  L  I  G  *  :  L  W  Q  H  D  E  I  C  R  I  V  Q  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23577" stop="23216"/>
                    <exon start="21959" stop="21923"/>
                    <exon start="21835" stop="21599"/>
                    <exon start="21513" stop="21466"/>
                    <exon start="20505" stop="20064"/>
                    <exon start="19935" stop="19922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STVTCTLCVNNSFLDFGSEAMGAVTSSMAAKFAFFPPNPPSYGVVVEESTGKLKLTEVAAKENVDVLKLPTKKGTEIVAVYIRNPAATLTVLYSHGNAADLGQMYELFVELSHLLRVNLMGYDYSGYGRSTGKPSEQNTYADIEAAYRCLEETYGVKEEDVILYGQSVGSGPTLDLASRLSRLRAVVLHSPILSGLRVMYAVKRTYWFDIYKNIDKIPLVECPVLIIHGTADDVVDCSHGKQLFELSKQKYEPLWVKTGNHCDLELFPEYIIHLKKFISAIEKSTSFRNVSALSINQIDKPRSSTDCRPRSSTDQREKSRLSTEKREPRISTDQREKSRASIDRKEKSSKSVDLSDKANDNTEQQEKARKSIDRLALAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20276" e_stop="20069"/>
            <exon e_start="19935" e_stop="19850"/>
            <exon e_start="18870" e_stop="18189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="0.995"/>
          <exon-intron don_prob="0.910" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="20276" e_stop="20069" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="20068" i_stop="19936" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19935" e_stop="19850" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.906">
            <gDNA_intron_boundary i_start="19849" i_stop="18871" i_length="979"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18870" e_stop="18189" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20276" stop="20069"/>
              <exon start="19935" stop="19850"/>
              <exon start="18870" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCG : CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAG : ATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</gDNA_template>
            <first_frame> Q  I  V  D  P  G  R  A  Q  I  R  G  R  N  L  G  *  A  Q  R  R  E  S  L  E  *  A  Q  I  K  E  K  N  P  E  L  A  *  T  A  R  R  S  R  A  R  V  W  I  S  Q  I  R  Q  M  I  I  Q  N  N  K  R  K  L  E  K  A  L  I   : A  L  A  T  *  *  D  L  P  Y  C  A  I  L  I  A  S  S  Q  W  E  Q  M  S  E  C  L  M  K  :  I  A  V  F  Q  E  C  T  C  S  G  A  Q  L  N  I  P  M  Q  T  L  F  V  D  T  T  A  N  Q  N  G  L  S  M  I  V  I  T  R  D  P  T  I  W  M  N  W  V  S  N  K  E  K  V  A  G  F  L  S  L  G  Y  V  I  I  *  P  I  T  K  C  S  F  K  S  F  M  A  H  L  T  G  D  L  F  I  I  L  T  H  R  R  Y  S  A  I  K  Y  N  R  S  L  W  S  F  F  L  I  Q  I  V  T  G  N  L  Y  H  F  L  S  R  A  C  T  K  L  Q  M  L  C  F  N  T  L  K  L  C  C  L  Y  Y  R  K  G  T  E  S  S  I  V  A  S  *  G  I  *  S  *  *  N  H  P  G  L  S  L  V  L  E  *  S  *  L  S  S  S  L  L  R  H  S  L  S  Y  R  S  F  S  F  I  M  I  L  H  T  S  V  D  *  T  S  S  Q  N  I  Y  K  V  Y  V  V  V  V  W  S  T  I  N  Q  P  M  K  R  T  T  Q  D  </first_frame>
            <second_frame>  R  L  *  T  P  V  E  H  R  S  E  G  E  I  *  A  K  H  R  E  E  R  A  *  N  K  H  R  S  K  R  K  I  Q  S  *  H  R  P  Q  G  E  V  E  Q  E  C  G  S  L  R  *  G  K  *  *  Y  R  T  T  R  E  S  *  K  K  H  *  S  :  L  W  Q  H  D  E  I  C  R  I  V  Q  Y  *  L  L  Q  A  S  G  S  K  C  L  N  V  *  *  R :   *  Q  F  S  K  N  V  R  A  P  E  L  N  *  T  S  Q  C  K  H  C  L  *  I  P  R  R  T  K  M  V  L  A  *  *  L  S  H  G  I  L  Q  F  G  *  I  G  L  V  T  R  K  K  W  R  G  F  S  R  W  V  M  *  L  Y  D  P  L  Q  N  V  L  L  K  V  L  W  P  I  *  Q  E  I  Y  L  L  F  *  H  I  G  D  T  V  L  *  S  T  I  D  L  C  G  R  S  F  *  F  K  L  *  L  A  I  Y  I  I  S  S  P  V  P  V  P  N  C  K  C  Y  A  S  I  P  *  S  C  V  A  C  T  T  G  R  E  P  N  L  L  L  W  L  H  E  A  S  N  P  D  E  T  T  Q  V  *  V  W  F  W  S  N  H  S  C  H  L  P  S  F  D  T  L  Y  H  I  D  L  S  P  L  L  *  F  Y  T  L  R  W  T  R  L  V  H  K  I  F  T  K  C  M  L  L  W  Y  G  V  P  *  T  N  Q  *  K  E  L  L  K  I </second_frame>
            <third_frame>   D  C  R  P  R  S  S  T  D  Q  R  E  K  S  R  L  S  T  E  K  R  E  P  R  I  S  T  D  Q  R  E  K  S  R  A  S  I  D  R  K  E  K  S  S  K  S  V  D  L  S  D  K  A  N  D  N  T  E  Q  Q  E  K  A  R  K  S  I  D  R :   F  G  N  M  M  R  S  A  V  L  C  N  I  D  C  F  K  P  V  G  A  N  V  *  M  S  D  E   : D  S  S  F  P  R  M  Y  V  L  R  S  S  T  K  H  P  N  A  N  T  V  C  R  Y  H  G  E  P  K  W  S  *  H  D  S  Y  H  T  G  S  Y  N  L  D  E  L  G  *  *  Q  G  K  S  G  G  V  S  L  V  G  L  C  D  Y  M  T  H  Y  K  M  F  F  *  K  F  Y  G  P  F  D  R  R  S  I  Y  Y  F  N  T  *  E  I  Q  C  Y  K  V  Q  *  I  F  V  V  V  L  F  N  S  N  C  N  W  Q  F  I  S  F  P  L  P  C  L  Y  Q  I  A  N  V  M  L  Q  Y  P  E  V  V  L  P  V  L  P  E  G  N  R  I  F  Y  C  G  F  M  R  H  L  I  L  M  K  P  P  R  F  E  F  G  F  G  V  I  I  V  V  I  F  P  P  S  T  L  F  I  I  S  I  F  L  L  Y  Y  D  S  T  H  F  G  G  L  D  *  F  T  K  Y  L  Q  S  V  C  C  C  G  M  E  Y  H  K  P  T  N  E  K  N  Y  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18571" stop="18269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVVVLFNSNCNWQFISFPLPCLYQIANVMLQYPEVVLPVLPEGNRIFYCGFMRHLILMKPPRFEFGFGVIIVVIFPPSTLFIISIFLLYYDSTHFGGLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20274" stop="20069"/>
                    <exon start="19935" stop="19863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCRPRSSTDQREKSRLSTEKREPRISTDQREKSRASIDRKEKSSKSVDLSDKANDNTEQQEKARKSIDRFGNMMRSAVLCNIDCFKPVGANV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19918" stop="19850"/>
                    <exon start="18870" stop="18673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLPYCAILIASSQWEQMSECLMKIAVFQECTCSGAQLNIPMQTLFVDTTANQNGLSMIVITRDPTIWMNWVSNKEKVAGFLSLGYVII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18672" stop="18412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PITKCSFKSFMAHLTGDLFIILTHRRYSAIKYNRSLWSFFLIQIVTGNLYHFLSRACTKLQMLCFNTLKLCCLYYRKGTESSIVAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29021" PGL_stop="29591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29021" e_stop="29591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="29021" e_stop="29591" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29021" stop="29591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATGTAATTTTCATAATTTTTTTTTATATATTTCTGAAAATTATTACTACTACCTACTCTGTAGTTCAGTAGTGGAAAAAAAAAAACATGGTAACGCAATTCACGAAAGAGGCAAGAACGGAGAGATGATAACATACAGGATTTGGTTTTGACGGATAGCGATATGCGCTGTAATTTATACATTGAGGTAACCTTTTTCTACAACTTTTTATCATTTTTAGCCTCTAATCAGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAGATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCTATGAAGAACTGTTTACATTGTAAATTTAACCTAATTGGAGTTTTGCCTTGATTGAAGTTAGTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACATTCAGAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTCA</gDNA_template>
            <first_frame> S  K  L  A  K  T  L  F  Q  K  S  C  N  F  H  N  F  F  L  Y  I  S  E  N  Y  Y  Y  Y  L  L  C  S  S  V  V  E  K  K  K  H  G  N  A  I  H  E  R  G  K  N  G  E  M  I  T  Y  R  I  W  F  *  R  I  A  I  C  A  V  I  Y  T  L  R  *  P  F  S  T  T  F  Y  H  F  *  P  L  I  S  S  P  S  N  K  I  R  F  C  S  N  R  I  C  E  T  Q  L  E  K  D  S  I  H  T  S  D  D  P  F  C  C  W  C  F  H  Q  S  K  L  S  I  S  K  F  Y  E  E  L  F  T  L  *  I  *  P  N  W  S  F  A  L  I  E  V  S  L  G  L  V  W  C  V  Q  L  N  *  N  W  G  F  G  G  L  I  V  P  T  F  R  G  S  S  *  V  G  I  S  G  I  *  F  </first_frame>
            <second_frame>  Q  N  *  Q  K  L  F  F  K  N  H  V  I  F  I  I  F  F  Y  I  F  L  K  I  I  T  T  T  Y  S  V  V  Q  *  W  K  K  K  N  M  V  T  Q  F  T  K  E  A  R  T  E  R  *  *  H  T  G  F  G  F  D  G  *  R  Y  A  L  *  F  I  H  *  G  N  L  F  L  Q  L  F  I  I  F  S  L  *  S  V  V  P  P  T  R  F  D  F  V  R  I  G  S  V  K  P  S  W  K  K  I  R  S  I  P  Q  M  I  L  F  V  V  G  V  F  I  N  Q  N  *  A  F  L  S  S  M  K  N  C  L  H  C  K  F  N  L  I  G  V  L  P  *  L  K  L  V  W  V  W  S  G  V  C  S  S  I  R  I  G  V  L  G  D  *  L  Y  P  H  S  E  V  L  A  K  W  G  F  L  G  F  D  S </second_frame>
            <third_frame>   K  I  S  K  N  S  F  S  K  I  M  *  F  S  *  F  F  F  I  Y  F  *  K  L  L  L  L  P  T  L  *  F  S  S  G  K  K  K  T  W  *  R  N  S  R  K  R  Q  E  R  R  D  D  N  I  Q  D  L  V  L  T  D  S  D  M  R  C  N  L  Y  I  E  V  T  F  F  Y  N  F  L  S  F  L  A  S  N  Q  *  S  L  Q  Q  D  S  I  L  F  E  S  D  L  *  N  P  V  G  K  R  F  D  P  Y  L  R  *  S  F  L  L  L  V  F  S  S  I  K  I  E  H  F  *  V  L  *  R  T  V  Y  I  V  N  L  T  *  L  E  F  C  L  D  *  S  *  F  G  F  G  L  V  C  A  A  Q  L  E  L  G  F  W  G  I  N  C  T  H  I  Q  R  F  *  L  S  G  D  F  W  D  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29594" PGL_stop="29771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29594" e_stop="29771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="29594" e_stop="29771" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29594" stop="29771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGAAATAGCGGAATCTTCGGAATCTGGGTCTGGGTTGTTGAACTCGACACAGGTAAAAAGTGGGTCTTTGCCAGAAGAGGACAGTATTCACAGGCAAGTTAGCAGCTTTGGAAGTAGTGGCTCCAGGAATACAAGCCCATTAGGGCGTATAGGATCAAGAAATACAAGCCCTTCA</gDNA_template>
            <first_frame> G  *  N  S  G  I  F  G  I  W  V  W  V  V  E  L  D  T  G  K  K  W  V  F  A  R  R  G  Q  Y  S  Q  A  S  *  Q  L  W  K  *  W  L  Q  E  Y  K  P  I  R  A  Y  R  I  K  K  Y  K  P  F  </first_frame>
            <second_frame>  V  E  I  A  E  S  S  E  S  G  S  G  L  L  N  S  T  Q  V  K  S  G  S  L  P  E  E  D  S  I  H  R  Q  V  S  S  F  G  S  S  G  S  R  N  T  S  P  L  G  R  I  G  S  R  N  T  S  P  S </second_frame>
            <third_frame>   L  K  *  R  N  L  R  N  L  G  L  G  C  *  T  R  H  R  *  K  V  G  L  C  Q  K  R  T  V  F  T  G  K  L  A  A  L  E  V  V  A  P  G  I  Q  A  H  *  G  V  *  D  Q  E  I  Q  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30271" PGL_stop="30846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30271" e_stop="30846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30271" e_stop="30846" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30271" stop="30846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCGGGTGTGCTC</gDNA_template>
            <first_frame> G  S  C  L  W  L  L  I  E  R  I  G  H  L  K  L  L  P  P  A  I  F  M  V  T  G  L  C  Q  R  R  Y  M  I  Q  R  S  T  N  G  R  F  T  R  Q  C  L  L  *  T  F  V  P  P  R  W  H  F  V  I  Q  D  C  I  W  K  L  S  P  H  L  V  *  *  C  I  G  W  I  Q  G  S  G  N  T  S  L  L  S  F  H  A  H  C  W  M  G  T  *  L  L  E  L  T  N  A  Y  F  W  L  E  G  *  G  S  I  V  L  F  K  V  *  G  Y  G  N  *  I  T  Q  K  S  S  G  L  K  *  A  G  C  L  Q  D  I  F  V  H  F  *  D  Y  L  L  K  D  L  N  A  L  D  R  I  T  *  Y  A  S  R  L  G  T  K  E  K  A  F  F  M  M  S  I  R  R  C  G  L  G  L  P  G  V  L </first_frame>
            <second_frame>  A  V  A  Y  G  C  *  *  K  G  *  V  I  *  S  Y  C  H  Q  R  Y  L  W  *  Q  V  F  A  N  G  G  I  *  F  K  D  R  Q  M  V  A  S  P  D  N  A  C  C  K  P  L  F  L  Q  D  G  I  L  *  F  K  T  V  F  G  N  S  L  P  T  W  F  D  D  V  S  A  G  Y  R  A  V  G  T  H  P  C  *  V  S  T  L  I  V  G  W  V  P  S  C  W  N  S  Q  T  P  I  F  G  W  K  D  R  A  L  *  Y  S  S  K  Y  E  D  M  G  T  R  S  L  K  S  R  L  G  *  N  K  Q  D  A  S  K  I  F  S  C  T  F  K  T  I  C  *  K  I  *  M  L  W  T  G  *  P  N  M  L  H  V  L  E  P  R  K  R  P  S  L  *  C  R  *  E  G  V  V  L  D  C  R  V  C   </second_frame>
            <third_frame>   Q  L  L  M  V  V  D  R  K  D  R  S  F  K  V  I  A  T  S  D  I  Y  G  D  R  S  L  P  T  E  V  Y  D  S  K  I  D  K  W  S  L  H  Q  T  M  P  A  V  N  L  C  S  S  K  M  A  F  C  D  S  R  L  Y  L  E  T  L  S  P  L  G  L  M  M  Y  R  L  D  T  G  Q  W  E  H  I  P  A  K  F  P  R  S  L  L  D  G  Y  L  V  A  G  T  H  K  R  L  F  L  V  G  R  I  G  L  Y  S  T  L  Q  S  M  R  I  W  E  L  D  H  S  K  V  V  W  V  E  I  S  R  M  P  P  R  Y  F  R  A  L  L  R  L  S  A  E  R  F  E  C  F  G  Q  D  N  L  I  C  F  T  S  W  N  Q  G  K  G  L  L  Y  D  V  D  K  K  V  W  S  W  I  A  G  C  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30273" stop="30845"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLMVVDRKDRSFKVIATSDIYGDRSLPTEVYDSKIDKWSLHQTMPAVNLCSSKMAFCDSRLYLETLSPLGLMMYRLDTGQWEHIPAKFPRSLLDGYLVAGTHKRLFLVGRIGLYSTLQSMRIWELDHSKVVWVEISRMPPRYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYDVDKKVWSWIAGCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40988" PGL_stop="44387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40988" e_stop="41162"/>
            <exon e_start="42210" e_stop="42597"/>
            <exon e_start="43172" e_stop="43325"/>
            <exon e_start="44299" e_stop="44387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.149" acc_prob="0.002" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40988" e_stop="41162" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41163" i_stop="42209" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42210" e_stop="42597" e_length="388"/>
          </exon>
          <intron i_serial="2" don_prob="0.149" acc_prob="0.002">
            <gDNA_intron_boundary i_start="42598" i_stop="43171" i_length="574"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43172" e_stop="43325" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="43326" i_stop="44298" i_length="973"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44299" e_stop="44387" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40988" stop="41162"/>
              <exon start="42210" stop="42597"/>
              <exon start="43172" stop="43325"/>
              <exon start="44299" stop="44387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGGGCTCTGCTTTTCTACTACTAATAAAAACCAAAAGTAAACCGCGTGCATTGGCTTTTTACCCATTATTCATTCTACTGCGCCATTTCCACAATTGATAGCACACCCTTTTACGGTTTTTTTTCTCTTTTTCTTGGTTTTGATGGAAACCCAATGAGATTCCCCTCTGAAG : ATAAGCTCCATCCTAGTCTCACAACATGGTCAAGTTTCTTTGTTTTGGGAAAAGATTGAAGAATGGTTCATAAAGCTGATTTAGTTATTATTGGCATCTGTGTCGGTGTGGCTTTTGGAATTCTCATTGCATCACTTGTTTTCTTTGGAATTCGGTGGTACAAAAGGCGTGTTCATCTTCAGCACCATCCAAATGAGAGATCTCTAGCAACTCTTCCAATACGGACAAATGGACTTGGAACAAGCGTTGATTTTAGTGCATCTCTGTCAAATTCTGTAGCTATTAAGACATCAGGATTTCCTGCCACAAAACCACTGCACAGTTGGTGGAGTCACCCTTCTAAAGATCAATTTGCTTCAGCATCTGGATTACCAAGATATTTTTATAA : GGACATTCAAAAAGCTACCCAAAACTTTACAACCATTCTGGGACAGGGCTCTTTTGGTCCAGTGTACAAAGCTACAATGCCTGCTGGTGGAGTAGTTGCGGTGAAAGTTCTTGCTACTGACTCAAAACAAGGAGAGAAGGAGTTCTTTACTGAG : GTAACACTTCTAGGTAGGCTTCATCATCGGAATTTAGTAAATTTGGTGGGTTATTGTGTTGATAAAGGACATCGCATGTTAATATATGA</gDNA_template>
            <first_frame> S  R  A  L  L  F  Y  Y  *  *  K  P  K  V  N  R  V  H  W  L  F  T  H  Y  S  F  Y  C  A  I  S  T  I  D  S  T  P  F  Y  G  F  F  S  L  F  L  G  F  D  G  N  P  M  R  F  P  S  E   : D  K  L  H  P  S  L  T  T  W  S  S  F  F  V  L  G  K  D  *  R  M  V  H  K  A  D  L  V  I  I  G  I  C  V  G  V  A  F  G  I  L  I  A  S  L  V  F  F  G  I  R  W  Y  K  R  R  V  H  L  Q  H  H  P  N  E  R  S  L  A  T  L  P  I  R  T  N  G  L  G  T  S  V  D  F  S  A  S  L  S  N  S  V  A  I  K  T  S  G  F  P  A  T  K  P  L  H  S  W  W  S  H  P  S  K  D  Q  F  A  S  A  S  G  L  P  R  Y  F  Y  K :   D  I  Q  K  A  T  Q  N  F  T  T  I  L  G  Q  G  S  F  G  P  V  Y  K  A  T  M  P  A  G  G  V  V  A  V  K  V  L  A  T  D  S  K  Q  G  E  K  E  F  F  T  E  :  V  T  L  L  G  R  L  H  H  R  N  L  V  N  L  V  G  Y  C  V  D  K  G  H  R  M  L  I  Y   </first_frame>
            <second_frame>  V  G  L  C  F  S  T  T  N  K  N  Q  K  *  T  A  C  I  G  F  L  P  I  I  H  S  T  A  P  F  P  Q  L  I  A  H  P  F  T  V  F  F  L  F  F  L  V  L  M  E  T  Q  *  D  S  P  L  K  :  I  S  S  I  L  V  S  Q  H  G  Q  V  S  L  F  W  E  K  I  E  E  W  F  I  K  L  I  *  L  L  L  A  S  V  S  V  W  L  L  E  F  S  L  H  H  L  F  S  L  E  F  G  G  T  K  G  V  F  I  F  S  T  I  Q  M  R  D  L  *  Q  L  F  Q  Y  G  Q  M  D  L  E  Q  A  L  I  L  V  H  L  C  Q  I  L  *  L  L  R  H  Q  D  F  L  P  Q  N  H  C  T  V  G  G  V  T  L  L  K  I  N  L  L  Q  H  L  D  Y  Q  D  I  F  I   : R  T  F  K  K  L  P  K  T  L  Q  P  F  W  D  R  A  L  L  V  Q  C  T  K  L  Q  C  L  L  V  E  *  L  R  *  K  F  L  L  L  T  Q  N  K  E  R  R  S  S  L  L  R :   *  H  F  *  V  G  F  I  I  G  I  *  *  I  W  W  V  I  V  L  I  K  D  I  A  C  *  Y  M  </second_frame>
            <third_frame>   *  G  S  A  F  L  L  L  I  K  T  K  S  K  P  R  A  L  A  F  Y  P  L  F  I  L  L  R  H  F  H  N  *  *  H  T  L  L  R  F  F  F  S  F  S  W  F  *  W  K  P  N  E  I  P  L  *  R :   *  A  P  S  *  S  H  N  M  V  K  F  L  C  F  G  K  R  L  K  N  G  S  *  S  *  F  S  Y  Y  W  H  L  C  R  C  G  F  W  N  S  H  C  I  T  C  F  L  W  N  S  V  V  Q  K  A  C  S  S  S  A  P  S  K  *  E  I  S  S  N  S  S  N  T  D  K  W  T  W  N  K  R  *  F  *  C  I  S  V  K  F  C  S  Y  *  D  I  R  I  S  C  H  K  T  T  A  Q  L  V  E  S  P  F  *  R  S  I  C  F  S  I  W  I  T  K  I  F  L  *  :  G  H  S  K  S  Y  P  K  L  Y  N  H  S  G  T  G  L  F  W  S  S  V  Q  S  Y  N  A  C  W  W  S  S  C  G  E  S  S  C  Y  *  L  K  T  R  R  E  G  V  L  Y  *   : G  N  T  S  R  *  A  S  S  S  E  F  S  K  F  G  G  L  L  C  *  *  R  T  S  H  V  N  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42269" stop="42597"/>
                    <exon start="43172" stop="43325"/>
                    <exon start="44299" stop="44385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMVHKADLVIIGICVGVAFGILIASLVFFGIRWYKRRVHLQHHPNERSLATLPIRTNGLGTSVDFSASLSNSVAIKTSGFPATKPLHSWWSHPSKDQFASASGLPRYFYKDIQKATQNFTTILGQGSFGPVYKATMPAGGVVAVKVLATDSKQGEKEFFTEVTLLGRLHHRNLVNLVGYCVDKGHRMLIY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41018" stop="41162"/>
                    <exon start="42210" stop="42268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPKVNRVHWLFTHYSFYCAISTIDSTPFYGFFSLFLGFDGNPMRFPSEDKLHPSLTTWSSFFVLGKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45871" PGL_stop="46133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45871" e_stop="46133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="45871" e_stop="46133" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45871" stop="46133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGCATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCAATTCTTGAGCTTATTTTTTGCAGCATAAAAGATATAGGAAAGACATCACGCTGAGTGTTGGATCAACAACTTGGCATGAAATTGGTGTTTTTGGATATGATTTAAGTTATATAAACTAACCATGTAAAGAATTTTTATATCGGAAAATTTAAGTTGACAAGATTTT</gDNA_template>
            <first_frame> D  R  T  S  T  G  *  I  E  K  H  G  Q  H  *  *  K  R  S  *  M  T  F  H  S  Q  P  *  T  L  C  F  N  S  *  A  Y  F  L  Q  H  K  R  Y  R  K  D  I  T  L  S  V  G  S  T  T  W  H  E  I  G  V  F  G  Y  D  L  S  Y  I  N  *  P  C  K  E  F  L  Y  R  K  I  *  V  D  K  I   </first_frame>
            <second_frame>  I  E  H  Q  Q  V  E  L  R  N  M  A  S  I  N  E  R  E  V  E  *  L  F  I  H  N  H  E  H  F  V  S  I  L  E  L  I  F  C  S  I  K  D  I  G  K  T  S  R  *  V  L  D  Q  Q  L  G  M  K  L  V  F  L  D  M  I  *  V  I  *  T  N  H  V  K  N  F  Y  I  G  K  F  K  L  T  R  F  </second_frame>
            <third_frame>   *  N  I  N  R  L  N  *  E  T  W  P  A  L  M  K  E  K  L  N  D  F  S  F  T  T  M  N  T  L  F  Q  F  L  S  L  F  F  A  A  *  K  I  *  E  R  H  H  A  E  C  W  I  N  N  L  A  *  N  W  C  F  W  I  *  F  K  L  Y  K  L  T  M  *  R  I  F  I  S  E  N  L  S  *  Q  D  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46802" PGL_stop="49165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46802" e_stop="47040"/>
            <exon e_start="47134" e_stop="47241"/>
            <exon e_start="48239" e_stop="48313"/>
            <exon e_start="48743" e_stop="49165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46802" e_stop="47040" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47134" e_stop="47241" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.969">
            <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48239" e_stop="48313" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.877">
            <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="48743" e_stop="49165" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46802" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTGTCCCCTACCGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA : GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT : GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG : GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCTCCTGTAGACTGTTGAAGATGTACACATTATATTCAACAGTAAAGTTT</gDNA_template>
            <first_frame> N  C  V  P  Y  R  L  N  N  L  L  L  P  *  V  N  L  I  V  S  P  S  P  Y  R  A  R  N  R  *  P  *  S  I  R  M  R  K  L  K  A  H  E  K  K  L  L  K  K  V  N  F  L  E  W  K  R  E  G  G  H  R  E  G  D  V  M  R  R  Y  H  V  T  G  R  D  D  Y  K  K :   Y  S  G  L  C  R  T  V  Q  K  L  V  N  I  L  K  Q  M  D  P  R  D  P  Y  R  I  E  M  T  D  S  L  L  E  K  L :   Y  N  M  G  V  I  T  T  R  K  S  L  S  V  C  E  N  L  S  V  S  S  F  C  R :   R  R  L  S  T  I  L  V  R  L  K  F  A  E  H  M  K  E  A  V  T  Y  I  E  Q  G  H  I  R  V  G  P  D  T  V  V  D  P  A  F  L  V  T  R  N  M  E  D  F  I  T  W  V  D  T  S  K  I  R  R  K  V  L  E  Y  N  D  Q  L  D  D  Y  D  A  M  N  *  *  L  V  T  D  L  *  S  I  *  E  L  I  E  *  E  K  W  N  T  F  F  L  A  I  V  G  V  P  W  Q  V  Y  L  L  L  V  C  L  V  L  P  P  L  Y  I  F  A  P  V  D  C  *  R  C  T  H  Y  I  Q  Q  *  S   </first_frame>
            <second_frame>  I  V  S  P  T  D  *  I  I  F  F  F  L  R  L  T  *  L  C  P  L  R  L  T  E  L  E  I  G  S  H  S  Q  S  G  *  G  S  L  K  L  M  K  R  S  F  *  R  R  *  T  S  L  N  G  R  E  K  E  V  T  E  K  V  M  S  C  V  V  T  T  S  L  A  E  T  T  T  K   : S  T  Q  V  C  A  E  Q  C  R  S  L  *  I  Y  *  S  R  W  T  Q  E  I  H  I  E  *  K  *  P  I  L  F  *  R  S   : C  T  T  W  A  *  *  L  Q  G  K  A  Y  P  C  V  R  T  Y  L  C  H  P  S  A   : G  V  G  C  P  L  S  W  *  G  *  S  L  L  N  T  *  R  K  Q  *  H  T  *  N  K  V  I  F  E  L  D  P  I  Q  L  L  T  Q  H  F  S  *  R  E  I  W  R  I  S  S  L  G  *  I  H  L  R  L  G  E  R  S  W  S  T  T  I  S  *  T  I  M  M  Q  *  I  D  D  W  *  Q  I  Y  E  A  F  E  N  *  L  N  E  R  N  G  T  H  S  S  W  P  L  L  E  F  P  G  R  F  T  S  C  *  F  A  L  Y  Y  L  P  S  T  F  L  L  L  *  T  V  E  D  V  H  I  I  F  N  S  K  V  </second_frame>
            <third_frame>   L  C  P  L  P  I  E  *  S  S  S  S  L  G  *  P  N  C  V  P  F  A  L  Q  S  S  K  S  V  A  I  V  N  Q  D  E  E  A  *  S  S  *  K  E  A  S  E  E  G  E  L  P  *  M  E  E  R  R  R  S  Q  R  R  *  C  H  A  S  L  P  R  H  W  Q  R  R  L  Q  K  :  V  L  R  F  V  Q  N  S  A  E  A  C  E  Y  T  E  A  D  G  P  K  R  S  I  *  N  R  N  D  R  F  S  S  R  E  A  :  V  Q  H  G  R  N  N  Y  K  E  K  L  I  R  V  *  E  L  I  C  V  I  L  L  Q  :  A  *  V  V  H  Y  L  G  E  A  E  V  C  *  T  H  E  G  S  S  D  I  H  R  T  R  S  Y  S  S  W  T  R  Y  S  C  *  P  S  I  S  R  D  E  K  Y  G  G  F  H  H  L  G  R  Y  I  *  D  *  E  K  G  L  G  V  Q  R  S  A  R  R  L  *  C  N  E  L  M  T  G  D  R  F  M  K  H  L  R  I  D  *  M  R  E  M  E  H  I  L  L  G  H  C  W  S  S  L  A  G  L  P  P  A  S  L  P  C  T  T  S  P  L  H  F  C  S  C  R  L  L  K  M  Y  T  L  Y  S  T  V  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46898" stop="47040"/>
                    <exon start="47134" stop="47241"/>
                    <exon start="48239" stop="48313"/>
                    <exon start="48743" stop="48974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRMRKLKAHEKKLLKKVNFLEWKREGGHREGDVMRRYHVTGRDDYKKYSGLCRTVQKLVNILKQMDPRDPYRIEMTDSLLEKLYNMGVITTRKSLSVCENLSVSSFCRRRLSTILVRLKFAEHMKEAVTYIEQGHIRVGPDTVVDPAFLVTRNMEDFITWVDTSKIRRKVLEYNDQLDDYDAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51571" PGL_stop="52900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51571" e_stop="52068"/>
            <exon e_start="52670" e_stop="52900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.998"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51571" e_stop="52068" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="52670" e_stop="52900" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51571" stop="52068"/>
              <exon start="52670" stop="52900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51858" stop="52068"/>
              <exon start="52670" stop="52898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592826" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTTGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG : GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</gDNA_template>
            <first_frame> *  F  L  M  M  L  K  V  D  I  Y  V  S  V  W  L  R  F  K  S  F  W  K  F  A  K  I  R  L  Y  L  L  E  Y  I  K  K  L  A  V  T  V  L  C  I  R  S  L  K  G  F  S  F  F  L  E  K  V  T  S  M  V  L  P  F  L  V  L  L  I  Y  F  Y  C  F  V  V  M  N  V  E  V  Q  K  *  C  Y  S  F  S  V  Y  P  V  F  E  S  L  F  H  S  R  S  L  C  S  S  L  L  K  *  I  Y  L  S  S  L  N  L  F  I  M  L  L  F  K  L  V  D  T  A  C  S  L  R  V  E  Y  N  M  D  D  L  Y  I  Y  G  E  I  L  S  I  L  Q  Q  *  M  E  G  A  K  T  T  L  D  Q  :  D  L  L  C  R  D  I  L  K  W  S  G  N  *  V  E  L  H  I  N  S  T  H  G  L  I  P  E  T  G  H  F  L  F  L  L  Q  Y  P  I  S  M  T  I  N  *  V  L  N  L  R  S  E  I  V  *  S  N  Q  N  C  G  I  L  K  T  H  F  F  E  G  *  F  F  H  S  Y </first_frame>
            <second_frame>  D  F  *  *  C  *  K  L  I  Y  T  C  L  F  G  F  D  S  K  V  F  G  S  L  Q  R  L  D  S  I  C  *  S  I  L  K  S  *  Q  L  L  C  F  A  L  G  A  *  K  D  L  V  S  F  *  K  K  *  H  R  W  S  Y  L  S  *  F  Y  *  Y  T  F  T  V  S  *  *  *  M  L  R  F  K  N  N  V  I  P  S  L  F  I  L  Y  L  N  H  C  F  I  Q  D  H  Y  V  L  L  C  *  N  E  Y  T  F  P  H  *  I  Y  L  S  C  Y  C  L  S  W  L  T  Q  H  V  L  S  G  L  N  I  I  W  M  I  C  T  F  M  E  K  S  S  A  F  S  N  N  E  W  K  E  R  K  P  H  W  T  R :   I  F  Y  V  G  I  F  L  S  G  Q  A  I  K  L  S  Y  I  *  T  L  H  M  G  *  F  L  R  L  V  I  F  F  S  F  Y  S  I  Q  S  Q  *  L  S  I  E  F  L  I  *  D  Q  K  L  Y  K  A  I  K  I  V  E  F  S  R  L  I  F  L  K  V  N  F  F  I  L   </second_frame>
            <third_frame>   I  F  D  D  V  E  S  *  Y  I  R  V  C  L  A  S  I  Q  K  F  L  E  V  C  K  D  *  T  L  F  A  R  V  Y  *  K  V  S  S  Y  C  A  L  H  *  E  L  K  R  I  *  F  L  S  R  K  S  N  I  D  G  L  T  F  L  S  F  I  D  I  L  L  L  F  R  S  D  E  C  *  G  S  K  I  M  L  F  L  L  C  L  S  C  I  *  I  T  V  S  F  K  I  I  M  F  F  F  V  E  M  N  I  P  F  L  I  E  F  I  Y  H  A  I  V  *  V  G  *  H  S  M  F  S  P  G  *  I  *  Y  G  *  F  V  H  L  W  R  N  P  Q  H  S  P  T  M  N  G  R  S  E  N  H  T  G  P   : G  S  F  M  *  G  Y  S  *  V  V  R  Q  L  S  *  V  T  Y  K  L  Y  T  W  V  N  S  *  D  W  S  F  S  F  P  F  T  V  S  N  L  N  D  Y  Q  L  S  S  *  F  K  I  R  N  C  I  K  Q  S  K  L  W  N  S  Q  D  S  F  F  *  R  L  I  F  S  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51574" stop="51825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMMLKVDIYVSVWLRFKSFWKFAKIRLYLLEYIKKLAVTVLCIRSLKGFSFFLEKVTSMVLPFLVLLIYFYCFVVMNVEVQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51923" stop="52068"/>
                    <exon start="52670" stop="52727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLSCYCLSWLTQHVLSGLNIIWMICTFMEKSSAFSNNEWKERKPHWTRIFYVGIFLSGQAIKLSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="93531" PGL_stop="98992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93531" e_stop="93635"/>
            <exon e_start="94312" e_stop="94650"/>
            <exon e_start="95416" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.971"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="93531" e_stop="93635" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94312" e_stop="94650" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95842" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98613" e_stop="98992" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93531" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</gDNA_template>
            <first_frame> C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  W  I  *  Y  Y  F  I  S  V   </first_frame>
            <second_frame>  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T  G  S  D  T  I  L  Y  L  F  </second_frame>
            <third_frame>   F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S  L  D  L  I  L  F  Y  I  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94459" stop="94650"/>
                    <exon start="95416" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93666" e_stop="94650"/>
            <exon e_start="95416" e_stop="95470"/>
            <exon e_start="95541" e_stop="95690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="93666" e_stop="94650" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95470" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95471" i_stop="95540" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95541" e_stop="95690" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93666" stop="94650"/>
              <exon start="95416" stop="95470"/>
              <exon start="95541" stop="95690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG : ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</gDNA_template>
            <first_frame> I  T  V  F  Y  A  H  F  Y  L  S  P  T  D  W  S  F  N  R  L  *  T  V  M  N  *  N  G  F  H  R  N  R  L  M  Q  R  F  S  R  *  S  S  V  F  *  G  S  I  M  Q  F  L  D  L  N  C  R  N  L  D  F  L  D  S  *  S  L  L  V  L  F  C  *  S  F  F  V  L  I  F  S  C  F  R  F  S  C  V  F  N  T  V  V  *  E  F  P  L  L  L  I  K  E  I  K  M  M  I  T  I  *  E  L  S  S  H  K  W  C  L  R  L  G  I  K  N  N  S  L  Q  I  Y  S  V  H  L  F  M  F  F  Y  F  I  A  I  C  *  V  L  G  S  W  I  M  P  K  K  L  F  I  N  L  N  L  M  *  F  C  L  L  T  Y  Q  I  *  T  V  S  L  F  I  S  F  F  G  S  C  N  F  L  V  S  L  E  V  D  H  P  C  I  S  P  S  M  H  I  *  *  L  F  F  T  C  T  G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R :   P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G   </first_frame>
            <second_frame>  S  L  Y  F  T  L  T  F  I  Y  L  L  L  I  G  A  L  I  D  C  K  L  L  *  T  E  M  G  F  I  G  I  G  *  C  R  D  F  H  G  K  V  L  F  F  R  D  R  *  C  N  F  L  I  *  I  V  E  I  L  I  F  L  I  L  D  H  C  W  C  C  F  V  D  H  F  L  F  *  F  F  L  V  F  G  L  A  V  S  L  T  L  L  Y  E  S  S  L  C  F  L  L  K  K  L  R  *  *  *  Q  F  E  N  *  V  L  T  S  G  V  *  D  *  E  L  R  I  I  P  C  K  F  I  V  S  I  Y  L  C  F  F  I  L  L  Q  F  V  E  C  *  A  A  G  L  C  Q  R  S  C  L  *  I  *  I  *  C  D  F  A  C  S  H  I  K  F  K  L  *  A  Y  L  F  H  S  S  E  A  V  I  F  L  C  H  S  R  *  T  I  H  V  F  L  H  Q  C  I  Y  D  S  C  S  L  L  V  Q  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q   : D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  </second_frame>
            <third_frame>   H  C  I  L  R  S  L  L  S  I  S  Y  *  L  E  L  *  S  I  V  N  C  Y  E  L  K  W  V  S  S  E  S  V  D  A  E  I  F  T  V  K  F  C  F  L  G  I  D  N  A  I  S  *  F  E  L  *  K  S  *  F  S  *  F  L  I  T  V  G  V  V  L  L  I  I  F  C  F  N  F  F  L  F  S  V  *  L  C  L  *  H  C  C  M  R  V  P  F  A  S  Y  *  R  N  *  D  D  D  N  N  L  R  I  K  F  S  Q  V  V  F  K  I  R  N  *  E  *  F  P  A  N  L  *  C  P  S  I  Y  V  F  L  F  Y  C  N  L  L  S  V  R  Q  L  D  Y  A  K  E  A  V  Y  K  F  E  F  N  V  I  L  L  A  H  I  S  N  L  N  C  K  L  I  Y  F  I  L  R  K  L  *  F  S  C  V  T  R  G  R  P  S  M  Y  F  S  I  N  A  Y  M  I  V  V  L  Y  L  Y  R  *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  :  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94459" stop="94650"/>
                    <exon start="95416" stop="95470"/>
                    <exon start="95541" stop="95596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQDHFLTMLIQDTSACNVMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94505" stop="94650"/>
                    <exon start="95416" stop="95470"/>
                    <exon start="95541" stop="95561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNIYLKTSSWVQFVAACEMNVKILPIQTAQYIGTAYAFDVLFKTSCICMHHCFIEENNMPLLHPLKTTSLRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101941" PGL_stop="99117"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101941" e_stop="101740"/>
            <exon e_start="101071" e_stop="100924"/>
            <exon e_start="100841" e_stop="100722"/>
            <exon e_start="100621" e_stop="100578"/>
            <exon e_start="100492" e_stop="100367"/>
            <exon e_start="100045" e_stop="99961"/>
            <exon e_start="99586" e_stop="99530"/>
            <exon e_start="99437" e_stop="99117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101941" e_stop="101740" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101071" e_stop="100924" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="100722" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100621" e_stop="100578" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100492" e_stop="100367" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99961" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99586" e_stop="99530" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99117" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101941" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</gDNA_template>
            <first_frame> T  W  C  I  F  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I   </first_frame>
            <second_frame>  H  G  V  Y  F  K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  </second_frame>
            <third_frame>   M  V  Y  I  L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101834" stop="101740"/>
                    <exon start="101071" stop="100924"/>
                    <exon start="100841" stop="100722"/>
                    <exon start="100621" stop="100578"/>
                    <exon start="100492" stop="100367"/>
                    <exon start="100045" stop="99961"/>
                    <exon start="99586" stop="99530"/>
                    <exon start="99437" stop="99351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100047" e_stop="99530"/>
            <exon e_start="99437" e_stop="99211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="100047" e_stop="99530" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99211" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100047" stop="99530"/>
              <exon start="99437" stop="99211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</gDNA_template>
            <first_frame> R  E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  V  Y  F  H  S  F  Y  P  I  A  N  W  R  V  C  L  L  F  F  L  L  V  S  F  L  A  E  H  S  L  R  G  V  W  V  W  V  *  V  V  L  L  E  N  C  *  R  Q  *  *  S  S  P  S  Q  L  Y  L  Y  L  A  L  *  L  V  F  C  P  A  P  *  W  T  *  S  F  I  S  H  V  T  *  F  S  V  P  H  A  H  Y  Y  Y  Y  F  P  N  P  P  C  R  L  A  R  Q  *  D  R  S  Q  F  Y  K  Y  L  K  *  I  L  L  V  L  G  M  *  R  *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  </first_frame>
            <second_frame>  E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R  Y  I  S  T  A  S  I  Q  *  P  T  G  E  S  V  F  Y  F  S  C  S  F  P  F  S  Q  N  I  H  *  G  V  C  G  C  G  C  K  *  Y  C  W  R  T  A  K  D  S  S  K  A  A  H  L  N  Y  I  C  T  W  H  Y  D  *  Y  F  V  L  L  L  D  G  P  S  H  S  Y  H  M  L  P  N  F  Q  Y  L  M  L  T  T  T  T  T  S  P  I  P  P  A  G  W  L  V  S  R  I  D  H  N  F  I  N  I  *  S  K  F  C  W  F  W  V  C  E  G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C </second_frame>
            <third_frame>   R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G  G  I  F  P  Q  L  L  S  N  S  Q  L  E  S  L  S  S  I  F  L  A  R  F  L  S  R  R  T  F  T  E  G  C  V  G  V  G  V  S  S  T  A  G  E  L  L  K  T  V  V  K  Q  P  I  S  I  I  S  V  L  G  I  M  T  S  I  L  S  C  S  L  M  D  L  V  I  H  I  T  C  Y  L  I  F  S  T  S  C  S  L  L  L  L  L  P  Q  S  P  L  Q  V  G  S  S  V  G  *  I  T  I  L  *  I  F  K  V  N  F  V  G  F  G  Y  V  K  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99985" stop="99641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQQWAKGGIFPQLLSNSQLESLSSIFLARFLSRRTFTEGCVGVGVSSTAGELLKTVVKQPISIISVLGIMTSILSCSLMDLVIHITCYLIFSTSCSLLLLLPQSPLQVGSSVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99578" stop="99530"/>
                    <exon start="99437" stop="99268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASATLIKYIRRPTFCAKWQVPVERWPTSREFHTSFSSCFKCHSIVHLQLHLRVFLPLVKLYAHWIDTGDSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="103502" PGL_stop="108426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103502" e_stop="104071"/>
            <exon e_start="104796" e_stop="104989"/>
            <exon e_start="105075" e_stop="105122"/>
            <exon e_start="105400" e_stop="105472"/>
            <exon e_start="105689" e_stop="105737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.996"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="0.863"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="103502" e_stop="104071" e_length="570"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="104796" e_stop="104989" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="105075" e_stop="105122" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="0.863">
            <gDNA_exon_boundary e_start="105400" e_stop="105472" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="0.898">
            <gDNA_exon_boundary e_start="105689" e_stop="105737" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103502" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103606" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCT</gDNA_template>
            <first_frame> K  Y  *  *  Q  N  L  D  I  R  V  F  *  G  L  K  E  S  V  E  V  K  R  S  A  R  N  W  Q  S  C  P  P  S  I  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S  *  V  F  H  C  L  H  L  F  F  R  V  K  V  R  D  L  G  S  K  T  V  V  K  D  H  S  F  F  L  *  F  M  V  H  F  C  *  *  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  </first_frame>
            <second_frame>  S  I  S  N  K  I  W  T  L  E  Y  F  K  V  S  K  N  Q  L  R  *  N  G  R  P  G  I  G  S  P  V  L  P  P  S  N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H  R  K  F  F  T  A  Y  I  Y  F  L  E  S  K  L  G  T  W  V  Q  K  Q  *  L  K  I  I  V  F  F  C  N  L  W  F  I  F  V  D  S  E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P </second_frame>
            <third_frame>   V  L  V  T  K  F  G  H  *  S  I  L  R  S  Q  R  I  S  *  G  K  T  V  G  Q  E  L  A  V  L  S  S  L  H  P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  V  S  F  S  L  L  T  F  I  F  *  S  Q  S  *  G  L  G  F  K  N  S  S  *  R  S  *  F  F  F  V  I  Y  G  S  F  L  L  I  V  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103771" stop="104071"/>
                    <exon start="104796" stop="104989"/>
                    <exon start="105075" stop="105122"/>
                    <exon start="105400" stop="105472"/>
                    <exon start="105689" stop="105735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVIYGSFLLIVRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103608" e_stop="103689"/>
            <exon e_start="103808" e_stop="104071"/>
            <exon e_start="104796" e_stop="104989"/>
            <exon e_start="105075" e_stop="105122"/>
            <exon e_start="105400" e_stop="105472"/>
            <exon e_start="105689" e_stop="105860"/>
            <exon e_start="107377" e_stop="107808"/>
            <exon e_start="107895" e_stop="108086"/>
            <exon e_start="108202" e_stop="108426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.978" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="0.975"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="103608" e_stop="103689" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.978">
            <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104071" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104796" e_stop="104989" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105075" e_stop="105122" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105400" e_stop="105472" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105689" e_stop="105860" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="107377" e_stop="107808" e_length="432"/>
          </exon>
          <intron i_serial="7" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107895" e_stop="108086" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="108202" e_stop="108426" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103608" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105772" stop="105860"/>
              <exon start="107377" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565337" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC : TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAA</gDNA_template>
            <first_frame> N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H   : L  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I   </first_frame>
            <second_frame>  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  :  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  </second_frame>
            <third_frame>   F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S :   E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103608" stop="103689"/>
                    <exon start="103808" stop="104071"/>
                    <exon start="104796" stop="104989"/>
                    <exon start="105075" stop="105122"/>
                    <exon start="105400" stop="105472"/>
                    <exon start="105689" stop="105860"/>
                    <exon start="107377" stop="107808"/>
                    <exon start="107895" stop="108086"/>
                    <exon start="108202" stop="108238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFGAQTATLDSSNFPDKITSIVSRFHLRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="113303" PGL_stop="108492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113303" e_stop="113044"/>
            <exon e_start="110483" e_stop="110405"/>
            <exon e_start="109665" e_stop="109601"/>
            <exon e_start="109437" e_stop="109338"/>
            <exon e_start="109258" e_stop="109217"/>
            <exon e_start="109088" e_stop="109047"/>
            <exon e_start="108960" e_stop="108854"/>
            <exon e_start="108738" e_stop="108492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.971" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113303" e_stop="113044" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.971">
            <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110483" e_stop="110405" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109665" e_stop="109601" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109437" e_stop="109338" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109258" e_stop="109217" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109088" e_stop="109047" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108960" e_stop="108854" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108853" i_stop="108739" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108738" e_stop="108492" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113303" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109047"/>
              <exon start="108960" stop="108854"/>
              <exon start="108738" stop="108492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG : TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG : CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG : GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</gDNA_template>
            <first_frame> L  S  I  Y  A  R  *  L  I  *  F  N  S  S  I  N  L  N  T  H  *  R  *  R  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  S  R  Q  V  T  F  S  K  R  R  S  G  L  L  K  K  A  N  E  I  S  V  L  C  D  A  D  V  A  L  I  V  F  S  T  K  G  K  L  F  E  Y  S  S  N  D  S  S :   M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L  I  T  K  K  :  L  K  E  N  E  K  T  Q  P  N  S  S  G  Q  N  S  A  T  V  H  V  F  P  S  H  S  H  H  Q  L  P  N  L  T  I  G :   G  A  F  G  G  M  N  R  D  G  S  G  Q  A  H  H  Y  P  G  S  N  N  N  N  N  N  S  S  L  I  P  P  W  M  L  R  H  V  S  N  E  G  *  N  N  I  P  E  S  I  I  N  *  L  Y  M  F  C  S  K  Q  Y  *  S  T  F  L  F  V  M  Y  N  *  L  K  L  I  K  L  F  I  L </first_frame>
            <second_frame>  S  L  S  M  L  G  S  L  Y  D  L  I  V  R  L  I  *  I  R  I  K  D  R  G  W  E  E  V  G  *  S  *  N  G  S  R  T  K  *  A  D  K  *  H  S  Q  R  D  D  L  D  Y  *  R  K  L  M  R  S  Q  Y  Y  V  M  L  M  L  H  *  L  C  F  L  P  K  A  N  F  S  S  I  P  Q  M  T  Q   : V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T  *  L  L  R  S :   *  K  K  M  R  R  H  N  P  T  H  Q  A  K  T  Q  Q  Q  F  M  C  F  H  H  I  L  T  T  N  F  L  T  L  Q  L   : G  G  L  L  E  E  *  T  E  M  D  R  V  R  L  I  T  I  R  V  Q  I  T  I  I  I  I  P  H  *  Y  R  H  G  C  S  A  T  S  A  T  K  D  E  I  I  F  R  R  V  *  L  I  N  C  I  C  F  V  P  N  N  I  N  Q  L  S  C  L  *  C  I  I  S  L  S  *  *  N  F  S  S   </second_frame>
            <third_frame>   L  Y  L  C  *  V  A  Y  M  I  *  *  F  D  *  F  K  Y  A  L  K  I  E  D  G  K  R  *  G  R  V  E  T  D  R  E  Q  N  K  Q  T  S  N  I  L  K  E  T  I  W  I  I  E  E  S  *  *  D  L  S  I  M  *  C  *  C  C  I  D  C  V  F  Y  Q  R  Q  T  F  R  V  F  L  K  *  L  K  :  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  D  Y  *  E   : A  K  R  K  *  E  D  T  T  Q  L  I  R  P  K  L  S  N  S  S  C  V  S  I  T  F  S  P  P  T  S  *  P  Y  N  W  :  G  G  F  W  R  N  E  Q  R  W  I  G  S  G  S  S  L  S  G  F  K  *  Q  *  *  *  F  L  I  D  T  A  M  D  A  P  P  R  Q  Q  R  R  M  K  *  Y  S  G  E  Y  N  *  L  I  V  Y  V  L  F  Q  T  I  L  I  N  F  P  V  C  D  V  *  L  A  *  A  N  K  T  F  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113234" stop="113044"/>
                    <exon start="110483" stop="110405"/>
                    <exon start="109665" stop="109601"/>
                    <exon start="109437" stop="109338"/>
                    <exon start="109258" stop="109217"/>
                    <exon start="109088" stop="109047"/>
                    <exon start="108960" stop="108854"/>
                    <exon start="108738" stop="108609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGRGRVELKRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSSNDSSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNLITKKLKENEKTQPNSSGQNSATVHVFPSHSHHQLPNLTIGGAFGGMNRDGSGQAHHYPGSNNNNNNSSLIPPWMLRHVSNEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110997" e_stop="110405"/>
            <exon e_start="109665" e_stop="109601"/>
            <exon e_start="109437" e_stop="109338"/>
            <exon e_start="109258" e_stop="109217"/>
            <exon e_start="109088" e_stop="109059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110997" e_stop="110405" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109665" e_stop="109601" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109437" e_stop="109338" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109258" e_stop="109217" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109088" e_stop="109059" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110997" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTG</gDNA_template>
            <first_frame> G  K  Q  D  D  V  *  L  R  T  Y  L  Q  P  F  T  T  I  S  I  S  S  Y  L  R  S  Y  S  V  N  S  C  M  C  V  *  L  I  T  L  I  Q  Y  F  F  S  L  P  L  P  L  F  K  P  T  I  V  D  F  S  H  V  L  T  W  A  F  A  H  L  Y  V  T  D  S  I  I  S  A  S  L  L  S  S  *  P  P  W  M  P  L  *  *  I  D  L  S  L  S  F  *  I  D  I  P  D  L  I  K  M  Q  K  T  S  H  S  K  I  T  *  L  E  S  Y  L  S  N  I  V  Y  Q  W  K  N  Y  Q  L  *  M  K  K  *  N  K  I  L  Y  Y  *  V  M  *  L  S  S  I  C  L  L  A  Y  N  F  F  F  V  Y  F  L  I  L  V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T   </first_frame>
            <second_frame>  E  S  K  M  M  F  N  Y  V  L  T  F  N  P  L  P  R  S  R  Y  P  P  I  *  D  H  I  P  *  I  H  A  C  V  S  N  *  S  P  L  S  N  I  F  L  V  Y  L  Y  P  S  L  N  P  P  L  S  I  S  H  T  F  S  L  G  H  L  H  I  S  T  S  Q  T  Q  S  S  Q  L  R  F  S  H  L  S  H  H  G  C  H  S  N  K  *  I  Y  L  F  H  F  E  L  I  Y  L  T  *  L  K  C  K  K  L  L  I  L  K  *  P  S  *  N  P  I  *  V  I  L  Y  I  N  G  K  I  T  N  C  K  *  K  N  K  I  K  F  Y  T  I  R  S  C  S  *  V  Q  Y  A  Y  W  L  I  I  F  F  L  F  I  F  *  F  *  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  </second_frame>
            <third_frame>   K  A  R  *  C  L  T  T  Y  L  P  S  T  L  Y  H  D  L  D  I  L  L  S  K  I  I  F  R  K  F  M  H  V  C  L  I  N  H  P  Y  P  I  F  F  *  S  T  S  T  P  L  *  T  H  H  C  R  F  L  T  R  S  H  L  G  I  C  T  S  L  R  H  R  L  N  H  L  S  F  A  S  L  I  L  A  T  M  D  A  T  L  I  N  R  S  I  S  F  I  L  N  *  Y  T  *  P  D  *  N  A  K  N  F  S  F  *  N  N  L  V  R  I  L  F  K  *  Y  C  I  S  M  E  K  L  P  T  V  N  E  K  I  K  *  N  F  I  L  L  G  H  V  V  K  F  N  M  L  T  G  L  *  F  F  F  C  L  F  F  D  F  S  M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110512" stop="110405"/>
                    <exon start="109665" stop="109601"/>
                    <exon start="109437" stop="109338"/>
                    <exon start="109258" stop="109217"/>
                    <exon start="109088" stop="109059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFCLFFDFSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="127191" PGL_stop="122635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127191" e_stop="126672"/>
            <exon e_start="125203" e_stop="125125"/>
            <exon e_start="124886" e_stop="124822"/>
            <exon e_start="123957" e_stop="123858"/>
            <exon e_start="123779" e_stop="123738"/>
            <exon e_start="123659" e_stop="123618"/>
            <exon e_start="123317" e_stop="123178"/>
            <exon e_start="122959" e_stop="122635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="127191" e_stop="126672" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125203" e_stop="125125" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124822" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123957" e_stop="123858" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123779" e_stop="123738" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123659" e_stop="123618" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123317" e_stop="123178" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122959" e_stop="122635" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127191" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</gDNA_template>
            <first_frame> P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N   </first_frame>
            <second_frame>  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I  </second_frame>
            <third_frame>   *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126886" stop="126672"/>
                    <exon start="125203" stop="125125"/>
                    <exon start="124886" stop="124822"/>
                    <exon start="123957" stop="123858"/>
                    <exon start="123779" stop="123738"/>
                    <exon start="123659" stop="123618"/>
                    <exon start="123317" stop="123178"/>
                    <exon start="122959" stop="122872"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 48920 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2126 bytes was the average size of a spliced alignment
$ 23208 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1657 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:37:15
-->
