<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:33:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714448" ref_strand="+" ref_description="SGN-E714448 [FB11BH08]">
      <seq>caggaataaagttttggtaaaaccagatgctacacagttgactgctgactctggaattgaaagtgcagctcctggactaataataaggaagcgcaagcaagttgagaagtctgatgttactgaagtcaaacattctcaagaatccactggagctgatttacaagcagaagatgcggtagctctgctgttgaaacattctcaaagataccatagtactgatgatgaagtggaatccagcggaggtgatgtatcacatgaaagtcaaacgaggaaggaaaagaaaaaaaagcaaaagaaggttcttggtccagacagaccatcatttctgaagagtgagaaggattacaattcttgggttcctcctgaagggcaatcaggtgacggacgcacctcactgaatgatcgtcttggttactgaatggtagagattttgatcgtttgacacataactaactatgggatggggtagctcggcttacagattgctgatggatcatgtaactaaatagcatttacagcttggtttgagatctcatcttgcgaaaatccttcacagggacatctgagcgagaacatttgttgtttgaagagaagaaaagaaatagaaaacgtgaagatacaagagctggattatgatcccattctcccactcttgctcctgtaccttctgttaacaagaacctgacaccttcctgattgaattgtatatagagattgactcggaaaggatagagataatgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="120" stop="1566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="420" g_stop="787" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="788" i_stop="888" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="889" g_stop="1265" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="745" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="757"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E714448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="420" e_stop="787"/>
          <exon e_start="889" e_stop="1265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAGGTATGCCACTTATTTGGTTCATGCCTACGCTTAGTTGCTTACTAATGGATGTTCAAGTTTTTTTTTGACAATTTTGCTGGTCTTTGTGAAACTTTTACCAGGGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAA</genome_strand>
        <mrna_strand>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG.....................................................................................................GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351839" ref_strand="+" ref_description="SGN-E351839 [cTOS-8-C22]">
      <seq>aggaataaagttttggtaaaaccagatgctacacagttgactgctgactctggaattgaaagtgcagctcctggactaataataaggaagcgcaagcaagttgagaagtctgatgttactgaagtcaaacattctcaagaatccactggagctgatttacaagcagaagatgcggtagctctgctgttgaaacattctcaaagataccatagtactgatgatgaagtggaatccagcggaggtgatgtatcacatgaaagtcaaacgaggaaggaaaagaaaaaaaagcaaaagaaggttcttggtccagacagaccatcatttctgaagagtgagaaggattacaattcttgggttcctcctgaagggcaatcaggtgacggacgcacctcactgaatgatcgtcttggttactgaatggtagagattttgatcgtttgacacataactaactatgggatggggtagctcggcttacagattgctgatggatcatgtaactaaatagcatttacagcttggtttgagatctcatcttgcgaaaatccttcacagggacatctgagcgagaacatttgttgtttgaagagaagaaagaaatagaaaacgtgaagatacaagagctggattatgatcccattctcccactcttgctcctgtaccttctgttaacaagaactgacaccttcctgattgaattgtatatagagattgactcggaaaggatagagnatatgagaaaatgtgcttgtaaatgcatgctttgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="121" stop="1593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="421" g_stop="787" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="788" i_stop="888" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="889" g_stop="1293" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="770" r_length="403" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E351839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="421" e_stop="787"/>
          <exon e_start="889" e_stop="1293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAGGTATGCCACTTATTTGGTTCATGCCTACGCTTAGTTGCTTACTAATGGATGTTCAAGTTTTTTTTTGACAATTTTGCTGGTCTTTGTGAAACTTTTACCAGGGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCC</genome_strand>
        <mrna_strand>AGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG.....................................................................................................GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAG-AAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAA-CTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGNATATGAGAAAATGTGCTTGTAAATGCATGCTTTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335319" ref_strand="+" ref_description="SGN-E335319 [cTOE-1-H22]">
      <seq>gtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaaccaacagagaaataacaactgtatggtgttagtgaggggaagacctccatcctcaagactgtcaaccaaaatgcaccgtacccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattgggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3400" stop="1824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3100" g_stop="3059" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="102" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="138" r_length="36" r_score="0.882"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2120" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="652" r_length="514" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E335319" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3100" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAA-CAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGA-GGGAAGA-CTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCA-CGTA-CCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATT-GGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCAATCTC</genome_strand>
        <mrna_strand>GTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACCAACAGAGAAATAA-CAACTG..........................................................................................TATGGTGTTAGTGAGGGGAAGACCTCCATCCTCAAG..............................................................................................................................ACTGTCAACCAAAATGCACCGTACCCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541062" ref_strand="+" ref_description="SGN-E541062 [TUS-61-K15](-)">
      <seq>gatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaagcaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3587" stop="1824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3287" g_stop="3059" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="289" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="323" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2125" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="829" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="830" polyA_stop="848"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E541062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3287" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCA</genome_strand>
        <mrna_strand>GATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716531" ref_strand="+" ref_description="SGN-E716531 [FB17BC06]">
      <seq>gggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3076" stop="1824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2776" g_stop="2757" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2630" g_stop="2128" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="523" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="544"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E716531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2776" e_stop="2757"/>
          <exon e_start="2630" e_stop="2128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</genome_strand>
        <mrna_strand>GGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223630" ref_strand="+" ref_description="SGN-E223630 [cLEL-14-N7](-)">
      <seq>ctgctggtacctatggcaataagcaaagttgcccttgctacaataactgaaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatnctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="2831" stop="1824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2531" g_stop="2128" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="421"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E223630" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2531" e_stop="2128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATT-AAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</genome_strand>
        <mrna_strand>CTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGAAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATNCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733584" ref_strand="+" ref_description="SGN-E733584 [LB10BF06]">
      <seq>cttatcttccacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagcttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3446" stop="1845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3146" g_stop="3059" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="181" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="669" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E733584" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3146" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>CTTATCTTC-CACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGC-TTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716891" ref_strand="+" ref_description="SGN-E716891 [FB18BD02]">
      <seq>aaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactannnnnnnnaaanaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3412" stop="1830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3112" g_stop="3059" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="114" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="148" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="637" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E716891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3112" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>AAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345354" ref_strand="-" ref_description="SGN-E345354 [cTOF-13-M11]">
      <seq>ttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatttaatccaaggccaacttggcgtttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3387" stop="1845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3087" g_stop="3059" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="89" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="123" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="612" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="637"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E345354" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3087" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>TTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATTTAATCCAAGGCCAACTTGGCGTTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623672" ref_strand="+" ref_description="SGN-E623672 [88767]">
      <seq>gcaaagttgcccttgctacaataactgggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtgatatttattggtgtaccataagaattatagcatgttcaagtcatctaattcaacgccaatttggcgtttgaatggttttttatactaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="2809" stop="1824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2509" g_stop="2142" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="396"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E623672" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2509" e_stop="2142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTTGCCCTTGCTACAATAACT-GGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>GCAAAGTTGCCCTTGCTACAATAACTGGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAGTATTAATTAA-T---CAACAC-T--TGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGCATGTTCAAGTCATCTAATTCAACGCCAATTTGGCGTTTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569319" ref_strand="+" ref_description="SGN-E569319 [13739]">
      <seq>cttagcttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcagaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgttttatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattagctagtagtgttaggccccaattatatagaagaagattgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttattttatattatgattatgattatatcttaagtgatatttattggtgtaccataagaattatagcatgttcaagtcaatctaattcaacggcaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3151" g_stop="3059" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="153" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="187" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2154" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="654" r_length="467" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E569319" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3151" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTC-ATCTAATCCAAGGCCAACTTG</genome_strand>
        <mrna_strand>CTTAGCTTCAAACAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAGAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGT-TT--TATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAGTGTTAGGCCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTATTTTATATTATGATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGCATGTTCAAGTCAATCTAATTCAACGGCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422693" ref_strand="-" ref_description="SGN-E422693 [STM-40-H14]">
      <seq>ttagcttcaaccaaaattatattactgcaatggctgggaaaatgagcattgtcttgttcgttcttttgggggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacagcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtgatatttattggtgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3059" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="186" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2187" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="618" r_length="432" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E422693" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422693" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAG</genome_strand>
        <mrna_strand>ATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTCGTTCTTTTGGGGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACAGCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGATATTTATTGGTGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448852" ref_strand="+" ref_description="SGN-E448852 [cSTS-4-L13]">
      <seq>ttagcttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacagcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtgatatttattggtgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3059" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="186" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2187" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="618" r_length="432" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E448852" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAG</genome_strand>
        <mrna_strand>ATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACAGCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGATATTTATTGGTGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345060" ref_strand="+" ref_description="SGN-E345060 [cTOF-22-N16]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagttaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttatttggtgtaccataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3447" stop="1895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3147" g_stop="3059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2195" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="610" r_length="427" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E345060" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3147" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTA-TTGGTGTACCATAAG</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAG----------TTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTTGGTGTACCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410046" ref_strand="+" ref_description="SGN-E410046 [PPI-15-L2]">
      <seq>ttagcttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcagaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgttttatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattagctagtagtgttaggccccaattatatagaagaagattgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttattttatattatgattatgaatatatcttaagtgatatttattggtgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3059" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="186" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2200" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="606" r_length="420" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E410046" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACC</genome_strand>
        <mrna_strand>ATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAGAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGT-TT--TATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAGTGTTAGGCCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTATTTTATATTATGATTATGAATATATCTTAAGTGATATTTATTGGTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434492" ref_strand="+" ref_description="SGN-E434492 [STM-60-C7]">
      <seq>ttagcttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcagaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgttttatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattagctagtagtgttaggccccaattatatagaagaagattgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttattttatattatgattatgattatatcttaagtgatatttattggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3059" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="186" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2203" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="603" r_length="417" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E434492" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGT</genome_strand>
        <mrna_strand>ATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAGAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGT-TT--TATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAGTGTTAGGCCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTATTTTATATTATGATTATGATTATATCTTAAGTGATATTTATTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734181" ref_strand="+" ref_description="SGN-E734181 [LB12AA04]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatnnnnnnnnnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3447" stop="1915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3147" g_stop="3059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2207" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="607" r_length="424" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E734181" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3147" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTG</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATNNNNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422692" ref_strand="+" ref_description="SGN-E422692 [STM-40-H14]">
      <seq>ttagcttcaaacaaaattatattactgcaatggctgggaaaatgatcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacagcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtgatatttattgggtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3059" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="186" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2207" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="598" r_length="412" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="617"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E422692" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTG</genome_strand>
        <mrna_strand>ATTACTGCAATGGCTGGGAAAATGATCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACAGCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGATATTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344888" ref_strand="+" ref_description="SGN-E344888 [cTOF-21-L7]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagncttttttgtgagacttattttatattattattatgattatatcttaagtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3447" stop="1913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3147" g_stop="3059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2213" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="601" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E344888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3147" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATAT</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGNCTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570517" ref_strand="+" ref_description="SGN-E570517 [15114]">
      <seq>ctgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacagcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtggccatgatcatccatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtgataaaaaaaaaacaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3426" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3126" g_stop="3059" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="128" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="162" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2215" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="566" r_length="404" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="588"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E570517" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3126" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGAT</genome_strand>
        <mrna_strand>CTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACAGCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGGCCATGATCATCCATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451701" ref_strand="+" ref_description="SGN-E451701 [cSTS-13-P24]">
      <seq>ttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacagcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactgtattatgtgactgcaaacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaactagtaatgttaggccccaattatatagaagaagttgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttaatttatattatgattatgattatatcttaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3145" g_stop="3059" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="181" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2216" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="584" r_length="403" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E451701" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3145" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGA</genome_strand>
        <mrna_strand>TTCAAACAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACAGCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTGTATT---ATGTGACTGCAAACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAACTAGTAATGTTAGGCCCCAATTATATAGAAGAAG-TTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTAATTTATATTATGATTATGATTATATCTTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344852" ref_strand="+" ref_description="SGN-E344852 [cTOF-21-M24]">
      <seq>ttacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattantatcttaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3440" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3139" g_stop="3059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="141" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="175" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2217" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="590" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E344852" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3139" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTA-TATCTTAAGTG</genome_strand>
        <mrna_strand>TTACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTANTATCTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577591" ref_strand="-" ref_description="SGN-E577591 [LE15AE01]">
      <seq>gggaaaatgagcactgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccacctgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3415" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3115" g_stop="3059" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="117" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="151" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2217" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="565" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="578"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E577591" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3115" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTG</genome_strand>
        <mrna_strand>GGGAAAATGAGCACTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCACCTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404173" ref_strand="+" ref_description="SGN-E404173 [PPC-12-L4]">
      <seq>cttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcagaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatccatactggtttatgtgactgcagacaccctacttctgtcaaatctaatagtattaattaatccacacttgtctcaagtggtgtattagctaataatggtaagccccaattatatagaagaagaatgggctaactaccagtactataacatggttataattatgcagcttttttatggtacttaatttatattatgaatatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3146" g_stop="3059" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="148" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="182" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2229" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="573" r_length="391" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E404173" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3146" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATT</genome_strand>
        <mrna_strand>CTTCAAACAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAGAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCCATACTG-GTT--TATGTGACTGCAGACACCCTACTTCTGTCAAATCTA--A-TAGT-ATTAATTAATCCACAC---TTGTCTCAAGTGGTGTATTAGCTAATAATGGTAAGCCCCAATTATATAGAAGAAGAATGGGCTAACTACCAGTACTATAACATGGTTATAATTATGCAGC-TTTTTTATGGTACTTAATTTATATTATGAATATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610226" ref_strand="-" ref_description="SGN-E610226 [57382]">
      <seq>tcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatctatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattagctagtaatattaggccccgattatatagaagaagattgggctagctacaagtactatagcatggttataattatgcagcttttttatgttacttattttatattatgattaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3144" g_stop="3059" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="146" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="180" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2235" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="565" r_length="385" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="584"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E610226" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3144" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATT</genome_strand>
        <mrna_strand>TCAAACAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCTATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAATATTAGGCCCCGATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGCAGC-TTTTTTATGTTACTTATTTTATATTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290333" ref_strand="+" ref_description="SGN-E290333 [cLES-20-I23]">
      <seq>tcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgttccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctatttttgtgagacttattttatattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3439" stop="1936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3139" g_stop="3059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="141" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="175" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2236" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="570" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E290333" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3139" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTAT</genome_strand>
        <mrna_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTTCCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTATTTTTGTGAGACTTATTTTATATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713502" ref_strand="+" ref_description="SGN-E713502 [FB08DC06]">
      <seq>cgtgtatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3219" stop="1950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2919" g_stop="2881" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="74" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2630" g_stop="2251" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="454" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E713502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2919" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTG-ATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTT</genome_strand>
        <mrna_strand>CGTGTATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578646" ref_strand="+" ref_description="SGN-E578646 [85765]">
      <seq>caaaattatattactgcaatggctgggaaaatgagcattgtcttgttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaagagaggtggcccaaagtgcccatgatcatctatactgtattatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaatcaacacttgtctcaagtggtgtattaggctagtaatattaggccccgattatatagaagaagattgggcttagctacaagtactatagcatggttataattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3139" g_stop="3059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="140" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="174" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2269" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="528" r_length="354" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E578646" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3139" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTA-GCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGC-TAGCTACAAGTACAATAGCATGGTTATGATTATGCA</genome_strand>
        <mrna_strand>CAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTG-TTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGCCCAAAGTGCCCATGATCATCTATACTGTATT---ATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAG---T-ATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGGCTAGTAATATTAGGCCCCGATTATATAGAAGAAGATTGGGCTTAGCTACAAGTACTATAGCATGGTTATAATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569308" ref_strand="+" ref_description="SGN-E569308 [13727]">
      <seq>ctcttagacttcaaacaaaattatattactgtcatggctgggaaaatgagcattgtcttgtctgttcttttggtggattttcctgactcagaatcagcgtttccagggccaacattatgcgtgatgagcagcaggcaacaacagagaaataaccaactgtatggtgttagtcagggcaagtctccatccgtcaacgattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaacgtgtctgtgtgttcctgctggtacctatggcagataagcgaaagttgcccttgctacaataactggaagaccaagagaggtggtccacaagtgcccatgatcatccatactgttttatgtgactgcagacaccctacttctgtcaaatctagtagtattaattaagtcaacacttgtctcaagtggtgtattagctagtactgttaggccccaagttatatagaagaagattggggtagctacaagtactatagcatggtgataattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3421" stop="1969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3122" g_stop="3059" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="98" r_length="66" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="159" r_length="61" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="196" r_length="37" r_score="0.765"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2269" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="554" r_length="358" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E569308" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3122" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGG-TTTTCCTGACTCAAAATCAG-GTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCA-GCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGG-AAGACTCCATCC-TCAA-GGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAA-GTGTTTGTGTGTTCCTGCTGGTACCTATGGCA-ATAAGC-AAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCA-AAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAA-TTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCA</genome_strand>
        <mrna_strand>CATGGCTGGGAAAATGAGCATTGTCTTGTCTGTTCTTTTGGTGGATTTTCCTGACTCAGAATCAGC......................................................................................................................GTTTCCAGGGCCAACATTATGCGTGATGAGCAGCAGGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGCAAGTCTCCATCCGTCAACG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAACGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAGATAAGCGAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGTGGTCCACAAGTGCCCATGATCATCCATACTGT-TT--TATGTGACTGCAGACACCCTACTTCTGTCAAATCTAGTAGTATTAATT-A--AGTCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTACTGTTAGGCCCCAAGTTATATAGAAGAAGATTGGGGTAGCTACAAGTACTATAGCATGGTGATAATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366904" ref_strand="+" ref_description="SGN-E366904 [cLPT-6-E19]">
      <seq>aaacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaagtcaggtttcaagggccaacactatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagtcttcatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcaaacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtactatagcatggttataattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="1970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3137" g_stop="3059" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="139" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="173" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2270" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="531" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E366904" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3137" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGC</genome_strand>
        <mrna_strand>AAACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAGTCAG......................................................................................................................GTTTCAAGGGCCAACACTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGTCTTCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAAACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279965" ref_strand="+" ref_description="SGN-E279965 [cLER-8-N13]">
      <seq>gggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3415" stop="2062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3115" g_stop="3059" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="117" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="151" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2362" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="420" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E279965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3115" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTC</genome_strand>
        <mrna_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548488" ref_strand="+" ref_description="SGN-E548488 [TUS-61-K15]">
      <seq>ttaatgtatactttttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagacccaaaagagtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3786" stop="2063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3486" g_stop="3059" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="488" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="522" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2363" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="790" r_length="268" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E548488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3486" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGA-CCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGT</genome_strand>
        <mrna_strand>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCCAAAAGA-GTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567265" ref_strand="+" ref_description="SGN-E567265 [11363]">
      <seq>cttagcttcaaacaaaattatattactgcaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtcagggaagtctccatcctcaagattgtcaaccaaaatgcacgtatcggtgttcaaagacatcgtataagaagccgtgtttgtttttctgccagaaatgctgtgcaaagtgtctgtgtgttcctgctggtacctatggcaataagcaaagttgccttgctacaataactggaagacaagagaggtggcccaaagtgcccatgatcatctatactgctattatgtgactgccaacaccctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3437" stop="2132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3151" g_stop="3059" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="153" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="187" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2407" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="407" r_length="220" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E567265" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3151" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTT</genome_strand>
        <mrna_strand>CTTAGCTTCAAACAAAATTATATTACTGCAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTCAGGGAAGTCTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTATCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTTTGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTCTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTG-CCTTGCTACAATAACTGGAAGA-CAAGAGAGGTGGCCCAAAGTGCCCATGATCATCTATACTG--CTATTATGTGACTGCCAACACCCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338166" ref_strand="+" ref_description="SGN-E338166 [cTOE-13-N19]">
      <seq>acaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3435" stop="2124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3135" g_stop="3059" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="171" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2424" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="378" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E338166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3135" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGA</genome_strand>
        <mrna_strand>ACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337246" ref_strand="+" ref_description="SGN-E337246 [cTOE-7-I14]">
      <seq>aattactacaatggctgggaaaatgagcgttgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3431" stop="2150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3131" g_stop="3059" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2940" g_stop="2881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="133" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2790" g_stop="2757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="167" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2630" g_stop="2450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="348" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E337246" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3131" e_stop="3059"/>
          <exon e_start="2940" e_stop="2881"/>
          <exon e_start="2790" e_stop="2757"/>
          <exon e_start="2630" e_stop="2450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATG</genome_strand>
        <mrna_strand>AATTACTACAATGGCTGGGAAAATGAGCGTTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294744" ref_strand="+" ref_description="SGN-E294744 [cLET-17-M11]">
      <seq>taatgtatactttttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="3785" stop="2801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3485" g_stop="3101" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E294744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3485" e_stop="3101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATT</genome_strand>
        <mrna_strand>TAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294745" ref_strand="+" ref_description="SGN-E294745 [cLET-17-M11](-)">
      <seq>aatgctcattttcccagccattgtagtaattttgtgtgaagctaagagaggaagtgaagtgtgtagagctttgagagaatcgacttctatttatagagagggatcttctcaagtggttaatctctttagcctagcacttgctgttgtcacactccaacagtatcccctatgcaaaattgaataaatctatacacagcatcgatagtttggtccaaaatctattaactgcatcaatatttttggaccaaactattaaccggagcattttatttcaatttcgcatagtgtaagaagttttttgccctttttgttcgtttcaagtcaatttttttctcatagttcagttcaaaagccatacatagcataatctaaaaagtatacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="2801" stop="3785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3101" g_stop="3485" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E294745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3101" e_stop="3485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</genome_strand>
        <mrna_strand>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284279" ref_strand="+" ref_description="SGN-E284279 [cLER-16-L5]">
      <seq>catcccaatgcaaacactgtttgtagataccacggcgaaccaaaatggtcttagcatgatagttatcacacgggatcctacaatttggatgaattgggttagtaacaaggaaaaagtggcggggtttctctcgttgggttatgtgattatatgacccattacaaaatgttcttttaaaagttttatggcccatttgacaggagatctatttattattttaacacataggagatacagtgctataaagtacaatagatctttgtggtcgttctttttaattcaaattgtaactggcaatttatatcatttcctctcccgtgcctgtaccaaattgcaaatgttatgcttcaataccctgaagttgtgttgcctgtactaccggaagggaaccgaatcttctattgtggcttcatgaggcatctaatcctgatgaaaccacccaggtttgagtttggttttggagtaatcatagttgtcatcttccctccttcgacactctttatcatatcgatctttctcctttattatgattctacacacttcggtggactagactagttcacaaaatatttacaaagtgtatgttgttgtggtatggagtaccataaaccaaccaatgaaaagaactactcaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="19126" stop="17889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18826" g_stop="18189" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E284279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18826" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</genome_strand>
        <mrna_strand>CATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285577" ref_strand="+" ref_description="SGN-E285577 [cLES-5-I13]">
      <seq>tcaactaaacatcccaatgcaaacactgtttgtagataccacggcgaaccaaaatggtcttagcatgatagttatcacacgggatcctacaatttggatgaattgggttagtaacaaggaaaaagtggcggggtttctctcgttgggttatgtgattatatgacccattacaaaatgttcttttaaaagttttatggcccatttgacaggagatctatttattattttaacacataggagatacagtgctataaagtacaatagatctttgtggtcgttctttttaattcaaattgtaactggcaatttatatcatttcctctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="19135" stop="18211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18835" g_stop="18510" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E285577" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18835" e_stop="18510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCC</genome_strand>
        <mrna_strand>TCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231947" ref_strand="+" ref_description="SGN-E231947 [cLED-7-P6]">
      <seq>ttgtagaccccggtcgagcacagatcagagggagaaatctaggctaagcacagagaagagagagcctagaataagcacagatcaaagagaaaaatccagagctagcatagaccgcaaggagaagtcgagcaagagtgtggatctctcagataaggcaaatgataatacagaacaacaagagaaagctagaaaaagcattgatcgctttggcaacatgatgagatctgccgtattgtgcaatattgattgcttcaagccagtgggagcaaatgtctgaatgtctgatgaagatagcagttttccaagaatgtacgtgctccggagctcaactaaacatcccaatgcaaacactggatgtagataccacggcgaaccaaaatggtcttagcatgatagatatcacacgggatcctacaatttggatgaatcgggttagtaacaaggaaaaagtggcggggtttctctcggtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="20572" stop="18389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20272" g_stop="20069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20068" i_stop="19936" i_length="133">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19935" g_stop="19850" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="290" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19849" i_stop="18871" i_length="979">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18870" g_stop="18689" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="472" r_length="182" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E231947" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20272" e_stop="20069"/>
          <exon e_start="19935" e_stop="19850"/>
          <exon e_start="18870" e_stop="18689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCGGTTAGGTTACTACTGTCTAAGAGTTCTTCACTTTATTTATTTTTGTCTCTTTTGCCGCTATGTTAATTCAGAATAGCCTTATCTTGTATAAAATGTGATAACTGTTATGACTGATAGATGTTATTGGTGGCAGCTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAGGTTAGTCTAAAAGGGTAGTCTTTACCACCTTCAGCTGTTGGACACTTAGTTGTTTATTTGGTTTTATCGGTTTCATCTTTAATTCTTACCTTGTCCATATGTTCCTTTAAAACTAGGGATTTTCCTTCTTTCTTATGATTGATTTGCTTCATCATTTTGGAGTCTTAATGTCTATTTCCTTGTACTACATGGTTAGCCATTTGGTCAATGTTTGAAGTCCTTGTGCAGGTTTATTCATCTCAAATAACTGTAAATACTCCTATTTGTAATCTGTGGCTCTCTGTCTGAGTTCTTGATTGCTTAATTAATTTATCATCAACAAAAGGAAATCTATGGATGTCCTGAATTCTGTGGAAACTTTTGCATGTAACTGAAATGCACGAGCGTATGTTGCATTTTTTTTGTTCTGGAAACAATTCCATATATTTGATACCCGAGTAGGTCATGTTTGTGTCGTCTGAAGCTTGGTGCCTGCTGCTGAAACCTCTAAAGAATCACTAAAATTAAGTTCAATTGAGGTTCTTGTAGTTGCTATGTGTTTCTTTCCAACATTGTACAGTATAATGTTAGCACAAAAGCTGTTTGTTTATCAGAAAAATTTCCAAAATACTTGTTGAAATAAGTCATCCAGATAAAACCTTTAGAGCTTCGAACCTCAGGAGTAATATCTAGAGATTAGACAATAAGCTGCAGAAACGGCTGAAAGGATCTACTTTGTTGTAAGTCATCCACTGCTTTTGCTGGAAGCGTTTCAAGGAGATCCGATGTCTACCTGTTTAATCTCCCTTATGATGAGCTGATGCGAATATAAAGTAAAACTATATTTTGGTTGATTGTAGAATGTAATGCTTAATTTTGCCTTCTATATTTTATTTTATTGGAGACGGTAATGATTTTCATTTCAAGTCTTTGACGGACCAGAAAAAACCTAAATGTTTTGTCGAACTCTTTACACTTACAGTTATACGATTGCTTTCAGATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGG</genome_strand>
        <mrna_strand>TTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCG.....................................................................................................................................CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGGATGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGATATCACACGGGATCCTACAATTTGGATGAATCGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242405" ref_strand="+" ref_description="SGN-E242405 [cLED-30-A14]">
      <seq>tgtagaccccggtcgagcacagatcagagggagaaatctaggctaagcacagagaagagagagcctagaataagcacagatcaaagagaaaaatccagagctagcatagaccgcaaggagaagtcgagcaagagtgtggatctctcagataaggcaaatgataatacagaacaacaagagaaagctagaaaaagcattgatcgctttggcaacatgatgagatctgccgtattgtgcaatattgattgcttcaagccagtgggagcaaatgtctgaatgtctgatgaagatagcagttttccaagaatgtacgtgctccggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="20571" stop="18536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20271" g_stop="20069" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20068" i_stop="19936" i_length="133">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19935" g_stop="19850" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="289" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19849" i_stop="18871" i_length="979">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18870" g_stop="18836" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="324" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E242405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20271" e_stop="20069"/>
          <exon e_start="19935" e_stop="19850"/>
          <exon e_start="18870" e_stop="18836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCGGTTAGGTTACTACTGTCTAAGAGTTCTTCACTTTATTTATTTTTGTCTCTTTTGCCGCTATGTTAATTCAGAATAGCCTTATCTTGTATAAAATGTGATAACTGTTATGACTGATAGATGTTATTGGTGGCAGCTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAGGTTAGTCTAAAAGGGTAGTCTTTACCACCTTCAGCTGTTGGACACTTAGTTGTTTATTTGGTTTTATCGGTTTCATCTTTAATTCTTACCTTGTCCATATGTTCCTTTAAAACTAGGGATTTTCCTTCTTTCTTATGATTGATTTGCTTCATCATTTTGGAGTCTTAATGTCTATTTCCTTGTACTACATGGTTAGCCATTTGGTCAATGTTTGAAGTCCTTGTGCAGGTTTATTCATCTCAAATAACTGTAAATACTCCTATTTGTAATCTGTGGCTCTCTGTCTGAGTTCTTGATTGCTTAATTAATTTATCATCAACAAAAGGAAATCTATGGATGTCCTGAATTCTGTGGAAACTTTTGCATGTAACTGAAATGCACGAGCGTATGTTGCATTTTTTTTGTTCTGGAAACAATTCCATATATTTGATACCCGAGTAGGTCATGTTTGTGTCGTCTGAAGCTTGGTGCCTGCTGCTGAAACCTCTAAAGAATCACTAAAATTAAGTTCAATTGAGGTTCTTGTAGTTGCTATGTGTTTCTTTCCAACATTGTACAGTATAATGTTAGCACAAAAGCTGTTTGTTTATCAGAAAAATTTCCAAAATACTTGTTGAAATAAGTCATCCAGATAAAACCTTTAGAGCTTCGAACCTCAGGAGTAATATCTAGAGATTAGACAATAAGCTGCAGAAACGGCTGAAAGGATCTACTTTGTTGTAAGTCATCCACTGCTTTTGCTGGAAGCGTTTCAAGGAGATCCGATGTCTACCTGTTTAATCTCCCTTATGATGAGCTGATGCGAATATAAAGTAAAACTATATTTTGGTTGATTGTAGAATGTAATGCTTAATTTTGCCTTCTATATTTTATTTTATTGGAGACGGTAATGATTTTCATTTCAAGTCTTTGACGGACCAGAAAAAACCTAAATGTTTTGTCGAACTCTTTACACTTACAGTTATACGATTGCTTTCAGATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGC</genome_strand>
        <mrna_strand>TGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCG.....................................................................................................................................CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429507" ref_strand="+" ref_description="SGN-E429507 [STM-52-M19]">
      <seq>ggcggcgatgctgactgtactttactcgcacggcaacgcggctgatctagggcagatgtacgagttgtttattgaactcagtcaccttctccgggtcaatttgatgggatatgactactcaggatatgggcggtccaccggcaagcctagtgagcagaatacttatgccgacatagaagctgcatatagatgtcttgaagagacatatggggtgaaagaggaagatgtcatactatatggacagtcagttggtagtggacccacactggatctggcatcgcgattgtcaagattgagggcagtggttcttcacagcccaatactctctggacttcgtgtgatgtatgcagtgaagcggacatattggtttgacatatataagaatattgacaaaataccattggttgaatgtcctgtcctcattattcacggcactgcagatgatgtagttgattgctcccatggcaaacaactttttgagctatctaagcagaaatatgagcctttgtgggtcaaaactggtaaccattgtgatttggagctcttcccggagtacataatacatctgaagaaattcatatcagctattgagaaatcaactagttttagaaatgtatctgcactttgcatgaaccaaatagataaacctcgaagcagtacagattgtagaccccggccaagcacagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="23623" stop="19946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23323" g_stop="23216" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="145" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21599" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="382" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21598" i_stop="21514" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21513" g_stop="21466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="430" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21465" i_stop="20506" i_length="960">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20505" g_stop="20246" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="690" r_length="260" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E429507" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23323" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21599"/>
          <exon e_start="21513" e_stop="21466"/>
          <exon e_start="20505" e_stop="20246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAGGTTAGCTTTATATTTCGAGCAGTTTGTGAAGTTGATTTGAAGGACTGGAGTTCATTGTGTAATTGGTTGCTTCTTTGTGGTGCAGAATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCACGTGAGTATTCATTTCTCTTTTCAATTGTCAACATTTACTAATACAGCTATAGTGATAAAACAGAGTGTTGCCAATAATTATAAAATAATTTACTGGTTAACTGTGATCTTTGGATATGAAATGGGGTCATTGGGATTATGCATATTGGGGTATATAAAATCCTTTTTGCCTGATTGTGTTTATGGAGGAACCAGAATAGAGGTTGGACTAAAATCTGATGTTCTTGGCAATTCTGCCTTCGGATTTCTCCAATTTAGCCTCCACTTACGACTCTCTACGAGTCTACTCCACCCCTGCCCCTGAAAATATTCACCACTTCTTTTTTTTCTTTTAGGATAAGTTTTGAGTTTTAGAATATTTATAATTTATTTCTTTTCTTAATAGAATTCTCTATCATAAGGTCTAGCCTTTCCATTTGTTGGGTTGTCGATACTCATTCCTCCATCCTATTTTGGTTGACCTTTCTATATTTAGTCTATCCCATCAATATGACCTCTTTTCCTTAAATTGCATAAGTCCACCACATTCAAATAGAATGTTACATCTTCCCTTTTTTTGTTAGTTTAATTGTATCTACATCTTTATTCCCTTTTTACATTTTCCAGCCATTTTGTTATAAGATGTCTTTGAAGACTCAAATGTAATATCTCAGCAAACCTTTTCCTCTAGAGATTTATGCAAGTCGATGCAAAATAGGACAGGGTAATAAGAGTAATTTGCCTTTCTAAGTCTTAAGATGATTCCGTACCTGTCATATTTTACAATCACAAATTCGCTGTTTGTAAACAAAAATACGAATACGGCGAAGATATATTGTTCTAGAGCACAGTATAGTATTTTTTTTCTGGATGTACCTTCTTTAGAGAGCAAACTATTCTTTTCTAGTGATATTATAATGGTAACTCTAGGATTCAGAAATGCTAGCTGGTATCTGATATGCATTTTTTCTGGGATTTCCAGGGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCTCTTAGCATAAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGTCGAGCACAGATCA</genome_strand>
        <mrna_strand>GGCGGCGATGCTGACTGTACTTTACTCGCACGGCAACGCGGCTGATCTAGGGCAGATGTACGAGTTGTTTATTGAACTCAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTACTCAGGATATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTATGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCAGTTGGTAGTGGACCCACACTGGATCTGGCATCGCGATTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCTGGACTTCGTGTGATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAG.....................................................................................AATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTCAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCGGAGTACATAATACATCTGAAGAAATTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCACTTTGCATGAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGCCAAGCACAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457400" ref_strand="+" ref_description="SGN-E457400 [cPRO-2-J9]">
      <seq>ggcggcgatgctgactgtactttactcgcacggcaacgcggctgatctagggcagatgtacgagttgtttattgaactcagtcaccttctccgggtcaatttgatgggatatgactactcaggatatgggcggtccaccggcaagcctagtgagcagaatacttatgccgacatagaagctgcatatagatgtcttgaagagacatatggggtgaaagaggaagatgtcatactatatggacagtcagttggtagtggacccacactggatctggcatcgcgattgtcaagattgagggcagtggttcttcacagcccaatactctctggacttcgtgtgatgtatgcagtgaagcggacatattggtttgacatatataagaatattgacaaaataccattggttgaatgtcctgtcctcattattcacggcactgcagatgatgtagttgattgctcccatggcaaacaactttttgagctatctaagcagaaatatgagcctttgtgggtcaaaactggtaaccattgtgatttggagctcttcccggagtacataatacatctgaagaaattcatatcagctattgagaaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="23623" stop="20035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23323" g_stop="23216" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="145" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21599" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="382" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21598" i_stop="21514" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21513" g_stop="21466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="430" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21465" i_stop="20506" i_length="960">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20505" g_stop="20335" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="601" r_length="171" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E457400" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23323" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21599"/>
          <exon e_start="21513" e_stop="21466"/>
          <exon e_start="20505" e_stop="20335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAGGTTAGCTTTATATTTCGAGCAGTTTGTGAAGTTGATTTGAAGGACTGGAGTTCATTGTGTAATTGGTTGCTTCTTTGTGGTGCAGAATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCACGTGAGTATTCATTTCTCTTTTCAATTGTCAACATTTACTAATACAGCTATAGTGATAAAACAGAGTGTTGCCAATAATTATAAAATAATTTACTGGTTAACTGTGATCTTTGGATATGAAATGGGGTCATTGGGATTATGCATATTGGGGTATATAAAATCCTTTTTGCCTGATTGTGTTTATGGAGGAACCAGAATAGAGGTTGGACTAAAATCTGATGTTCTTGGCAATTCTGCCTTCGGATTTCTCCAATTTAGCCTCCACTTACGACTCTCTACGAGTCTACTCCACCCCTGCCCCTGAAAATATTCACCACTTCTTTTTTTTCTTTTAGGATAAGTTTTGAGTTTTAGAATATTTATAATTTATTTCTTTTCTTAATAGAATTCTCTATCATAAGGTCTAGCCTTTCCATTTGTTGGGTTGTCGATACTCATTCCTCCATCCTATTTTGGTTGACCTTTCTATATTTAGTCTATCCCATCAATATGACCTCTTTTCCTTAAATTGCATAAGTCCACCACATTCAAATAGAATGTTACATCTTCCCTTTTTTTGTTAGTTTAATTGTATCTACATCTTTATTCCCTTTTTACATTTTCCAGCCATTTTGTTATAAGATGTCTTTGAAGACTCAAATGTAATATCTCAGCAAACCTTTTCCTCTAGAGATTTATGCAAGTCGATGCAAAATAGGACAGGGTAATAAGAGTAATTTGCCTTTCTAAGTCTTAAGATGATTCCGTACCTGTCATATTTTACAATCACAAATTCGCTGTTTGTAAACAAAAATACGAATACGGCGAAGATATATTGTTCTAGAGCACAGTATAGTATTTTTTTTCTGGATGTACCTTCTTTAGAGAGCAAACTATTCTTTTCTAGTGATATTATAATGGTAACTCTAGGATTCAGAAATGCTAGCTGGTATCTGATATGCATTTTTTCTGGGATTTCCAGGGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACT</genome_strand>
        <mrna_strand>GGCGGCGATGCTGACTGTACTTTACTCGCACGGCAACGCGGCTGATCTAGGGCAGATGTACGAGTTGTTTATTGAACTCAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTACTCAGGATATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTATGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCAGTTGGTAGTGGACCCACACTGGATCTGGCATCGCGATTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCTGGACTTCGTGTGATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAG.....................................................................................AATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTCAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCGGAGTACATAATACATCTGAAGAAATTCATATCAGCTATTGAGAAATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344078" ref_strand="+" ref_description="SGN-E344078 [cTOF-12-J14]">
      <seq>aaatctctacatttagccgtagaaatatacgtataattaatatattgattgccatttttcgccatcaacggattcgattcggaaccctagctagattttgggatcctacacttatacatagagagatatagtctactgttacttgtactctgtgtgtaaataattcatttctagattttggttcggaagccatgggagcggtgacatcgtccatggcagcaaagtttgcgttttttccgccgaatccgccgtcgtatggagtggtggtggaagaatcgacggggaaattgaagttgactgaagtggcggcgaaggaaaacgttgacgtattgaagctaccgacgaagaagggaacggagattgtcgcggtgtatattaggaatccggcggcgacgctgacggtgctttactcgcatggcaacgcggctgatctaggtcagatgtacgagttgtttgtcgaactaagtcaccttctccgggtcaatttgatgggatatgactattcagggtatgggcggtccaccggcaagcctagtgagcagaatacttacgccgacatagaagctgcatatagatgtcttgaagagacatatggggtgaaagaggaagatgtcatactatatggacagtcggttggtagtggacccacactggatctggggtcgcgggttgtcaagattgagggcagtgggtcttcacagcccaatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="24008" stop="21356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23708" g_stop="23216" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="530" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21656" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="711" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E344078" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23708" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGC-GGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTC</genome_strand>
        <mrna_strand>AAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGGGTCGCGGGTTGTCAAGATTGAGGGCAGTGGGTCTTCACAGCCCAATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314283" ref_strand="+" ref_description="SGN-E314283 [cTOA-21-E15]">
      <seq>tcttccttttcctttttctctcttcaaaccaaatctctacatttagccgtagaaatatacgtataattaatatattgattgccatttttcgccatcaacggattcgattcggaaccctagctagattttgggatcctacacttatacatagagagatatagtctactgttacttgtactctgtgtgtaaataattcatttctagattttggttcggaagccatgggagcggtgacatcgtccatggcagcaaagtttgcgttttttccgccgaatccgccgtcgtatggagtggtggtggaagaatcgacggggaaattgaagttgactgaagtggcggcgaaggaaaacgttgacgtattgaagctaccgacgaagaagggaacggagattgtcgcggtgtatattaggaatccggcggcgacgctgacggtgctttactcgcatggcaacgcggctgatctaggtcagatgtacgagttgtttgtcgaactaagtcaccttctccgggtcaatttgatgggatatgactattcagggtatgggcggtccaccggcaagcctagtgagcagaatacttacgccgacatagaagctgcatatagatgtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="24038" stop="21483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23738" g_stop="23216" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="560" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21783" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="613" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E314283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23738" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGA</genome_strand>
        <mrna_strand>TCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314225" ref_strand="+" ref_description="SGN-E314225 [cTOA-21-E14]">
      <seq>tcttccttttcctttttctctcttcaaaccaaatctctacatttagccgtagaaatatacgtataattaatatattgattgccatttttcgccatcaacggattcgattcggaaccctagctagattttgggatcctacacttatacatagagagatatagtctactgttacttgtactctgtgtgtaaataattcatttctagattttggttcggaagccatgggagcggtgacatcgtccatggcagcaaagtttgcgttttttccgccgaatccgccgtcgtatggagtggtggtggaagaatcgacggggaaattgaagttgactgaagtggcggcgaaggaaaacgttgacgtattgaagctaccgacgaagaagggaacggagattgtcgcggtgtatattaggaatccggcggcgacgctgacggtgctttactcgcatggcaacgcggctgatctaggtcagatgtacgagttgtttgtcgaactaagtcaccttctccgggtcaatttgatgggatatgactattcagggtatgggcggtccaccggcaagcctagtgagcagaatacttacgccgacatagaagctgcatatagatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="24038" stop="21486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23738" g_stop="23216" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="560" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21786" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="610" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E314225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23738" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCT</genome_strand>
        <mrna_strand>TCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728866" ref_strand="+" ref_description="SGN-E728866 [LA19AH02]">
      <seq>ctacatttagccgtagaaatatacgtataattaatatattgattgccatttttcgccatcaacggattcgattcggaaccctagctagattttgggatcctacacttatacatagagagatatagtctactgttacttgtactctgtgtgtaaataattcatttctagattttggttcggaagccatgggagcggtgacatcgtccatggcagcaaagtttgcgttttttccgccgaatccgccgtcgtatggagtggtggtggaagaatcgacggggaaattgaagttgactgaagtggcggcgaaggaaaacgttgacgtattgaagctaccgacgaagaagggaacggagattgtcgcggtgtatattaggaatccggcggcgacgctgacggtgctttactcgcatggcaacgcggctgatctaggtcagatgtacgagttgtttgtcgaactaagtcaccttctccgggtcaatttgatgggatatgactattcagggtatgggcggtccaccggcaagcctagtgagcagaatacttacgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="24002" stop="21510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23702" g_stop="23216" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21959" g_stop="21923" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="524" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21835" g_stop="21810" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="550" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E728866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23702" e_stop="23216"/>
          <exon e_start="21959" e_stop="21923"/>
          <exon e_start="21835" e_stop="21810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGGGTATATTTTCTCGTGCTTCTTGTACTAGTACTTTTTATTTAACTTTAATTATTTAAGTTTTTTTGCTTTTTCCTTTTTTTGGGTGAAAAGTATGTCTTGCTGTCGGATGAGAATGGTACAGTGGCTTTTTTGTTTCAATAGTAGAATCCAGTGTATACATCAAGGAGGGTTATTTTAGAAGATCTTTTTATATGTCTGGCACTTTTTTTTTGTTTTTGCTTGGCACGGAACTCTTGTTTCGAGTGAAAGGGAGAGCAGTGACCCTCACCACATTCACTGGTAAATTTCCCTCTACGGGGTGGGGTGTGGAATGCACTAAGTTAGTTGACTTCTCGACCAAAGGTGATCTAGCTCAACCTCCAAGTAGGAATAGATTCTAGGAATAGATTCTATTATTCGTGATCCAGTTAAGACGAGGGGCATTTCTAGCATTGAAATCATTCCTGCCAATTTCTGTTACAATTAAGCTTCCTTAAACCTAACATATACCGTTGATGCATCTTCAGATTCAGTGATAAAATAATGCTTGCATCGGAAACGTAGTAAGGTGATAGACCCATTGAGAGTTTCTGTTCTCACAGCATAATTGAAGTTGAAATACTCTCTGTTCCATCTTATGTGATTAGACTCTCAGATTAACACATGGCACGATGAAAAAGTTTGTCCTTGTGAGAAAAACTCCCACCAAAGTTTTACATTTGGAAGTTATTTTATTTCCTGAAAGTTGTAAGAGTTGTATGTGAATAAAATGGTATCAAATGGTTTGGGACAAAGGAGCATTATTCTTGATGCTTTTCTATATCTTCTTTCATATGAAGAGAAGACTAGTTGAGAAATTGTTTCCTGCGGCACAGCTGAAGTTGAAATGATACACTGATGAAAGCTAGGATTAATTTTCCAGTAAGATCTGGTGAAATGAGAAGTAAAGCTTGATTCTTTATGGTAAGAAATAAGCATTTCTTGCATCTGGACTACGCGGACTGTAGAAGTAACACTTATACCTTGCTCATGTATATTCTTGGAAATCCTTTCAGCTCTTTTTGGAACTGTTATGACCTCCAAAGAGTGAGATCTATGTAATTGCGATCTTGTGTTTGCGTCCTTTCATCCCCTTTTTATCCGGTTGCATAAATATTGTCTGAATGAACTTGGAGGAAAAGAGTACCCTGATTTGAGAAAAAGTCGCTTACTCTCGTCCTTTTGAACAGCTAGTGAATTTTTTTTTGATTTTGAACCCCGTTCCTTTCTTCTGGCAGATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAGGTACTAAAGATTTCTTTTGAAGATCAGTTAGGGTTGAGGTTTGTTGAGTTTGAAGTGTTAAACTCTTATATTCTTAATTTCCTATAGCCTAGTGAGCAGAATACTTACGCCGA</genome_strand>
        <mrna_strand>CTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG.......................................................................................CCTAGTGAGCAGAATACTTACGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365299" ref_strand="+" ref_description="SGN-E365299 [cLPT-2-C14]">
      <seq>gaggatactggtcaaaaatcaaaattagcaaaaactctttttcaaaaatcatataattttcattttttttttatatatttctgaaaattattactctgtagttcagtagtggaaaaaaaaacatggtaaccgcagttcacgaaagaggcaagaaccggagagatgataacctacaggatttggttttgaccggatagcgatatgccctgtaatttataccattgaggtaaccctttttctaccactttttatcatttttatcctcaaatctgtagtccctccaacaagattcgattttgttcgaatcggatctgtgaaacccagttggaaaaagattcgatccatacctcagatgatcctttttgttgttggtgttttcatcaatcaaaattgagcatttctaagttcaatggagaactgtttaccattgtaaattcaacctaattggagttttgccttgattgaagttcctttgggtttggtctggtgtgtgcagctcaattagaattggggttttgggggattaattgtacccaccttcataggttctagctaagtggggatttctgggatttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="28721" stop="29890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29021" g_stop="29590" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="580" r_length="562" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E365299" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29021" e_stop="29590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATGTAATTTTCATAATTTTTTTTTATATATTTCTGAAAATTATTACTACTACCTACTCTGTAGTTCAGTAGTGGAAAAAAAAAAACATGGTAA-CGCAATTCACGAAAGAGGCAAGAA-CGGAGAGATGATAACATACAGGATTTGGTTTTGA-CGGATAGCGATATGCGCTGTAATTTATA-CATTGAGGTAA-CCTTTTTCTACAACTTTTTATCATTTTTAGCCTCTAATCAGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAGATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCTATGAAGAACTGTTTA-CATTGTAAATTTAACCTAATTGGAGTTTTGCCTTGATTGAAGTTAGTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACATTCAGAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTC</genome_strand>
        <mrna_strand>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATATAATTTTCAT--TTTTTTTTTATATATTTCTG-AAA--A-T--TA-T---TACTCTGTAGTTCAGTAGTGGAAAAAA-AA-ACATGGTAACCGCAGTTCACGAAAGAGGCAAGAACCGGAGAGATGATAACCTACAGGATTTGGTTTTGACCGGATAGCGATATGCCCTGTAATTTATACCATTGAGGTAACCCTTTTTCTACCACTTTTTATCATTTTTATCCTCAAATCTGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAGATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCAATGGAGAACTGTTTACCATTGTAAATTCAACCTAATTGGAGTTTTGCCTTGATTGAAGTTCCTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACCTTCATAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248670" ref_strand="+" ref_description="SGN-E248670 [cLEF-58-K13]">
      <seq>cagttgcttatggttgttgatagaaaggataggtcatttaaagttattgccaccagcgatatttatggtgacaggtctttgccaacggaggtatatgattcaaagatcgacaaatggtcgcttcaccagacaatgcctgctgtaaacctttgttcctccaagatggcattttgtgattcaagactgtatttggaaactctctccccacttggtttgatgatgtatcggctggatacagggcagtgggaacacatccctgctaagtttccacgctcattgttggatgggtacctagttgctggaactcacaaacgcctatttttggttggaaggatagggctctatagtactcttcaaagtatgaggatatgggaactagatcactcaaaagtcgtctgggttgaaataagcaggatgcctccaagatattttcgtgcacttttaagactatctgctgaaagatttgaatgctttggacaggataacctaatatgcttcacgtcttggaaccaaggaaaaggccttctttatgatgtcgataagaaggtgtggtcttggattgcccggtgtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="29973" stop="31146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30273" g_stop="30846" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E248670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30273" e_stop="30846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCGGGTGTGCTC</genome_strand>
        <mrna_strand>CAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCCGGTGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248656" ref_strand="+" ref_description="SGN-E248656 [cLEF-58-E15]">
      <seq>cagttgcttatggttgttgatagaaaggataggtcatttaaagttattgccaccagcgatatttatggtgacaggtctttgccaacggaggtatatgattcaaagatcgacaaatggtcgcttcaccagacaatgcctgctgtaaacctttgttcctccaagatggcattttgtgattcaagactgtatttggaaactctctccccacttggtttgatgatgtatcggctggatacagggcagtgggaacacatccctgctaagtttccacgctcattgttggatgggtacctagttgctggaactcacaaacgcctatttttggttggaaggatagggctctatagtactcttcaaagtatgaggatatgggaactagatcactcaaaagtcgtctgggttgaaataagcaggatgcctccaagatattttcgtgcacttttaagactatctgctgaaagatttgaatgctttggacaggataacctaatatgcttcacgtcttggaaccaaggaaaaggccttctttatgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="29973" stop="31109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30273" g_stop="30809" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E248656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30273" e_stop="30809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTC</genome_strand>
        <mrna_strand>CAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484686" ref_strand="+" ref_description="SGN-E484686 [cSTE-14-I2]">
      <seq>cttttatacagtgaggagtacagcttgagttgggaagatcgggtgcaaatagcccttgatatttcacacggcgttgagtatctccacgatggggcagttcccccagtgatacaccgtgatttgaagactgccaatatattgctagatcaatctatgagagctaaggttgctgattttgggctgtcaaaggaggaggtatatgatggccgcaattcaggccttaaaggtacatatggctacatagatcctatgtatatatccacaagcaagtttacaacaaacagtgacatatatagctttggcattatcctttttgaactaatcaccgctattcatccacatcagaacttaatggaatatgtaaatcttgcggctatgagttcagatggggttgatgagatcctagacaagaagcttgttggaacatgcagtgtagaacaagtgaggagtcttgctgcaattgctcataaatgcatacatagaacacctangaagcgtccttccatgggcgaaatatcacatgcaatattgaaaataaaacagaggcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="44680" stop="46113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44987" g_stop="45069" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="93" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45070" i_stop="45151" i_length="82">
            <donor d_prob="0.585" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45152" g_stop="45223" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="165" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45224" i_stop="45338" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45339" g_stop="45542" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="369" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45543" i_stop="45631" i_length="89">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45632" g_stop="45813" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="551" r_length="182" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E484686" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44987" e_stop="45069"/>
          <exon e_start="45152" e_stop="45223"/>
          <exon e_start="45339" e_stop="45542"/>
          <exon e_start="45632" e_stop="45813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGAATACAGCCTGAGTTGGGAAGATCGGGTGCAAATAGCCCTTGATATTTCACATGGCATTGAGTATCTTCACGATGGGGTAGTCTGACTGACCAATTTACTTCTATTTGCCGTGCTCACAAGACTGGTTACTTATTCTTGGTTCACATTTCTTCCAACAGGCAGTTCCCCCAGTGATACACCGTGATTTGAAGACTGCCAATATATTGCTAGATCAATCTATGAGAGCTAAGGTCAGTGGAACTCCATACACTCAACTTTGCTGCTGTTGTTGTCTATTAAATTGCTTCCTTTGCATATTAGCCGAAGTTGTTACTTCCGAGTATTTACCTCTTTCTTTATGACTAGGTTGCTGATTTTGGGCTGTCAAAAGAGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTTCACAACGAAGAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACTAATCACCGCTATTCATCCACATCAGAACTTAATGGAATATGTAAATCTTGTAAGTTCCCAGATCATCCCATCCCATCCCATCACACTTCAAATGCAAATTTTACGTTGTCTTATTGTCTTGACCTGTTATGTACAAAGGCGGCAATGAGTTCTGATGGAGTTGATGAGATCCTAGACAAGAAGCTTGTTGGAACATGCAGTGTAGAACAAGTGAGGAGTCTTGCTGCAATTGCTCATAAATGCATACACAGAACACCTAGGAAGCGTCCTTCCATGGGCGAAATATCACATGCAATATTGAAAATAAAACAGAGGCGCCT</genome_strand>
        <mrna_strand>GTGAGGAGTACAGCTTGAGTTGGGAAGATCGGGTGCAAATAGCCCTTGATATTTCACACGGCGTTGAGTATCTCCACGATGGG..................................................................................GCAGTTCCCCCAGTGATACACCGTGATTTGAAGACTGCCAATATATTGCTAGATCAATCTATGAGAGCTAAG...................................................................................................................GTTGCTGATTTTGGGCTGTCAAAGGAGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTTTACAACAAACAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACTAATCACCGCTATTCATCCACATCAGAACTTAATGGAATATGTAAATCTT.........................................................................................GCGGCTATGAGTTCAGATGGGGTTGATGAGATCCTAGACAAGAAGCTTGTTGGAACATGCAGTGTAGAACAAGTGAGGAGTCTTGCTGCAATTGCTCATAAATGCATACATAGAACACCTANGAAGCGTCCTTCCATGGGCGAAATATCACATGCAATATTGAAAATAAAACAGAGGCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484670" ref_strand="+" ref_description="SGN-E484670 [cSTE-14-E4]">
      <seq>cttttatacagtgaggagtacagcttgagttgggaagatcgggtgcaaatagcccttgatatttcacacggcgttgagtatctccacgatggggcagttcccccagtgatacaccgtgatttgaagactgccaatatattgctagatcaatctatgagagctaaggttgctgattttgggctgtcaaaggaggaggtatatgatggccgcaattcaagccttaaaggtacatatggctacatagatcctatgtatatatccacaagcaagtctacaacaaacagtgacatatgtgggtgtggcattatcctttttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="44680" stop="45793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44987" g_stop="45069" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="93" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45070" i_stop="45151" i_length="82">
            <donor d_prob="0.585" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45152" g_stop="45223" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="165" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45224" i_stop="45338" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45339" g_stop="45493" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="320" r_length="155" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E484670" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44987" e_stop="45069"/>
          <exon e_start="45152" e_stop="45223"/>
          <exon e_start="45339" e_stop="45493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGAATACAGCCTGAGTTGGGAAGATCGGGTGCAAATAGCCCTTGATATTTCACATGGCATTGAGTATCTTCACGATGGGGTAGTCTGACTGACCAATTTACTTCTATTTGCCGTGCTCACAAGACTGGTTACTTATTCTTGGTTCACATTTCTTCCAACAGGCAGTTCCCCCAGTGATACACCGTGATTTGAAGACTGCCAATATATTGCTAGATCAATCTATGAGAGCTAAGGTCAGTGGAACTCCATACACTCAACTTTGCTGCTGTTGTTGTCTATTAAATTGCTTCCTTTGCATATTAGCCGAAGTTGTTACTTCCGAGTATTTACCTCTTTCTTTATGACTAGGTTGCTGATTTTGGGCTGTCAAAAGAGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTTCACAACGAAGAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACT</genome_strand>
        <mrna_strand>GTGAGGAGTACAGCTTGAGTTGGGAAGATCGGGTGCAAATAGCCCTTGATATTTCACACGGCGTTGAGTATCTCCACGATGGG..................................................................................GCAGTTCCCCCAGTGATACACCGTGATTTGAAGACTGCCAATATATTGCTAGATCAATCTATGAGAGCTAAG...................................................................................................................GTTGCTGATTTTGGGCTGTCAAAGGAGGAGGTATATGATGGCCGCAATTCAAGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTCTACAACAAACAGTGACATATGTGGGTGTGGCATTATCCTTTTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422616" ref_strand="-" ref_description="SGN-E422616 [STM-40-P13]">
      <seq>aaggttgctgattttgggctgtcaaagagggaggtatatgatggccgcaattcaggccttaaaggtacatatggctacatagatcntatgtatatatccacaagcaagtttacaacaaagagtgacatatatagctttggcattatcctttttgaactaatcaccgctattcatccacatcagaacttaatggaatatgtaaatcttgcggctatgagttcagatggggttgatgagatcctagacaagaagcttgttggaacatgcagtgtagaacaagtgaggagtcttgctgcaattgctcataaatgcatacatagaacacctaggaagcgtccttccatgggcgaaatatcacatgcaatattgaaaataaaacagaggcgccttgtcaaagaagataccatgtcatttacaggatatgacagttcaagaatggcaagaaggatagaacatcaacaggttgaattgagaaacatggccagcattaatgaaagagaagttgaatgacttttcattcacaaccatgaacactttgtttctattcttgagcttatttttgcagcataaaagatataggaaagacatcatgcagagtgttgaatcaacaaattggcatgaagttgtgtttttggatacaatttaagttatataaactaaccgtgtaaagaatttttatatgggaaaatttaatttgacaagttgtaacatgtatccttctttccacgtcttactaattcaagcttattaataccttgaatttttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="45037" stop="46496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45221" g_stop="45223" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45224" i_stop="45338" i_length="115">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45339" g_stop="45542" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="207" r_length="204" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45543" i_stop="45631" i_length="89">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45632" g_stop="46180" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="752" r_length="545" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="784"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E422616" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422616" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45221" e_stop="45223"/>
          <exon e_start="45339" e_stop="45542"/>
          <exon e_start="45632" e_stop="46180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCAGTGGAACTCCATACACTCAACTTTGCTGCTGTTGTTGTCTATTAAATTGCTTCCTTTGCATATTAGCCGAAGTTGTTACTTCCGAGTATTTACCTCTTTCTTTATGACTAGGTTGCTGATTTTGGGCTGTCAAAAGAGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTTCACAACGAAGAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACTAATCACCGCTATTCATCCACATCAGAACTTAATGGAATATGTAAATCTTGTAAGTTCCCAGATCATCCCATCCCATCCCATCACACTTCAAATGCAAATTTTACGTTGTCTTATTGTCTTGACCTGTTATGTACAAAGGCGGCAATGAGTTCTGATGGAGTTGATGAGATCCTAGACAAGAAGCTTGTTGGAACATGCAGTGTAGAACAAGTGAGGAGTCTTGCTGCAATTGCTCATAAATGCATACACAGAACACCTAGGAAGCGTCCTTCCATGGGCGAAATATCACATGCAATATTGAAAATAAAACAGAGGCGCCTTGTCAAAGAGGATACCATGTCATTTACAAGATATGACAGTTCAAGAATGGCTAGAAGGATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGCATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCAATTCTTGAGCTTATTTTTTGCAGCATAAAAGATATAGGAAAGACATCACGCTGAGTGTTGGATCAACAACTTGGCATGAAATTGGTGTTTTTGGATATGATTTAAGTTATATAAACTAACCATGTAAAGAATTTTTATATCGGAAAATTTAAGTTGACAAGATTTTAACATGTATCCTTTCTTTCCACCTCTTACTAATTCACGCTTATTAAT</genome_strand>
        <mrna_strand>AAG...................................................................................................................GTTGCTGATTTTGGGCTGTCAAAGAGGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCNTATGTATATATCCACAAGCAAGTTTACAACAAAGAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACTAATCACCGCTATTCATCCACATCAGAACTTAATGGAATATGTAAATCTT.........................................................................................GCGGCTATGAGTTCAGATGGGGTTGATGAGATCCTAGACAAGAAGCTTGTTGGAACATGCAGTGTAGAACAAGTGAGGAGTCTTGCTGCAATTGCTCATAAATGCATACATAGAACACCTAGGAAGCGTCCTTCCATGGGCGAAATATCACATGCAATATTGAAAATAAAACAGAGGCGCCTTGTCAAAGAAGATACCATGTCATTTACAGGATATGACAGTTCAAGAATGGCAAGAAGGATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGCATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCTATTCTTGAGCTTA-TTTTTGCAGCATAAAAGATATAGGAAAGACATCATGCAGAGTGTTGAATCAACAAATTGGCATGAAGTT-GTGTTTTTGGATACAATTTAAGTTATATAAACTAACCGTGTAAAGAATTTTTATATGGGAAAATTTAATTTGACAAG-TTGTAACATGTATCC-TTCTTTCCACGTCTTACTAATTCAAGCTTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722069" ref_strand="+" ref_description="SGN-E722069 [FC16AD11]">
      <seq>gctaccgattgaatactcttcttcttccttaggttaacctaattgtgtccccttcgccttacagagctcgaaatcggtagccatagtcaatcaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatggaagagagaaggaggtcacagagaaggtgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcaggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagaaatgaccgattctcttctagagaagctgtacaacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggatttcatcacttgggtagatacatctaagattaggagaaaggtcttggagtacaacgatcagctagacgattatgatgcaatgaattgatgactggtgacagatttatgaagcatttgagaattgattgaatgagagaaatggaacacattcttcttggccattgttggagttccctggcaggtttacctcctgctagtttgccttgtactacctcccctctacatttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46513" stop="49418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46812" g_stop="47040" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="337" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="412" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49118" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="788" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E722069" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46812" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACCGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCT</genome_strand>
        <mrna_strand>GCTACCGATTGAATACTCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725241" ref_strand="+" ref_description="SGN-E725241 [FC26CA09]">
      <seq>aatcggccgaattgaccgattgaataatcttcttcttccttaggttaacctaattgtgtccccttcgccttacagagctcgaaatcggtagccatagtcaatcaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatgggaagagagaaggaggtcacagagaaggtgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcaggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagaaatgaccgattctcttctagagaagctgtacaacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggatttcatcacttgggtagatacatctaagattaggagaaaggtcttggagtacaacgatcagctagacgattatgatgcaatgaattgatgactggtgacagatttatgaagcatttgagaattgattgaatgagagaaatggaacacattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46515" stop="49340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46817" g_stop="47040" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="241" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="349" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49040" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="722" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E725241" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46817" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAAT-GGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTC</genome_strand>
        <mrna_strand>CGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342533" ref_strand="+" ref_description="SGN-E342533 [cTOF-8-J18]">
      <seq>ttcttcttccttaggttaacctaattgtgtccccttcgccttacagagctcgaaatcggtagccatagtcaatcaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatggaagagagaaggaggtcacagagaaggtgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcaggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagaaatgaccgattctcttctagagaagctgtacaacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggatttcatcacttgggtagatacatctaagattaggagaaaagtctttggagtacaacgatcagctagacgattatgatgcaatgaattgatgaccgggtgacagatttatgaagcatttgagaattgattgaatgagagaaatggaacacattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46530" stop="49339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46830" g_stop="47040" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="319" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="394" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49039" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="693" r_length="299" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E342533" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46830" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTC-TTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGA-CTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTT</genome_strand>
        <mrna_strand>TTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAAGTCTTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACCGGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301888" ref_strand="+" ref_description="SGN-E301888 [cLEW-25-J15]">
      <seq>ttcttcttccttaggttaacctaattgggggcccttcgccttacagagctcgaaatcggtagccatagtcaatcaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatggaaaaaagaaggaggtcacagagaaggtgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcaggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagaaatgaccgattctcttctatagaagctgtacaacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatctaggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46530" stop="49189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46830" g_stop="47040" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="319" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="394" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="48889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="541" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E301888" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46830" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="48889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTT</genome_strand>
        <mrna_strand>TTCTTCTTCCTTAGGTTAACCTAATTGGGGGCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAAAAAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTATAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTAGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620516" ref_strand="+" ref_description="SGN-E620516 [71218]">
      <seq>gttcgaaatcggtagccattgtcaaccaggatgaggaagcttaaagctcatgaaaagaagcttctgaagaaggtgaacttccttgaatggaagagagaaggaggtcacagagaagctgatgtcatgcgtcgttaccacgtcactggcagagacgactacaaaaagtactcgggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagagatgaccgattctcttctagagaagctgtataacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaatcagtgacatatatagaacagggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgaccagaaatatggaggacttcatcacttgggtagatacatctaaggattaggagaaaggtcttggagtacaacgataagctagatgattatgatgcaatgaattgatgactggtgacggattcgtgaagcatttgagaattgcaatgagggaaatggaacacattcttcttggccattggtggagttccctggcaggtttaactccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46577" stop="49381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46877" g_stop="47040" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="272" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="347" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49081" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="684" r_length="337" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E620516" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46877" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAA-GATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCT</genome_strand>
        <mrna_strand>GTTCGAAATCGGTAGCCATTGTCAACCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA.............................................................................................GTACTCGGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAGATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAATCAGTGACATATATAGAACAGGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACCAGAAATATGGAGGACTTCATCACTTGGGTAGATACATCTAAGGATTAGGAGAAAGGTCTTGGAGTACAACGATAAGCTAGATGATTATGATGCAATGAATTGATGACTGGTGACGGATTCGTGAAGCATTTGAGAATTG---CAATGAGGGAAATGGAACACATTCTTCTTGGCCATTGGTGGAGTTCCCTGGCAGGTTTAACTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588377" ref_strand="-" ref_description="SGN-E588377 [41929]">
      <seq>atgcgtcgttaccacgtcactggcagagacgactaccaaaagtactcgggtttgtgcagaacagtgcagaagcttgtgaatatactgaagcagatggacccaagagatccatatagaatagagatgaccgattctcttctagagaagctgtataacatgggcgtaataactacaaggaaaagcttatccgtgtgtgagaacttatctgtgtcatccttctgcaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaatcagtgacatatatagaacagggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgaccagaaatatggaggacttcatcacttgggtagatacatctaagattaggagaaaggtcttggagtacaacgataagctagatgattatgatgcaatgaattgatgactggtgacggatttgtgaagcatttgagaattgaatgagggaaatggaacacattcttcttggccattgttggagttccctggcaggtttacctccttctaggttgccttgtaccaccacccctctacatttttgatcctgtagactgttgaaagatgtacacattatattcaacagtaaagtttgatagaaaatctttgaaatttctagcgaatgttagtaacttattcactgtccatttgtagtagacatcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="46700" stop="49485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47000" g_stop="47040" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="149" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48239" g_stop="48313" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48743" g_stop="49171" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="650" r_length="426" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E588377" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588377" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47000" e_stop="47040"/>
          <exon e_start="47134" e_stop="47241"/>
          <exon e_start="48239" e_stop="48313"/>
          <exon e_start="48743" e_stop="49171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAAGTATGTCTTTCCTATATCACATGTGAATGTTTCTGTTCTTACAGTCTTATTGGTGTATAAAGCTAATTTCTTGTTTGTTTTATCTCTATTTAGGTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCTGTGAGTGTTTTAGCCTAACTTATTATGTTGTTAATCCCATTTATTGTTATTATTACTCTCTTAGTATCTTGTTTCTTCGATTTTAGTATTACATGTTGTTTGCTTGCTTCAATTATTGTATTATTTGTTGTTGCTATTGTTCTTGTTTCCTTGTTTTCAGCATGTGTTTTTTCCTTAACTACCTGTCTGAGACTGCTTCACACCAACCTCACGGGATCTCACTTGTGGGATTACAGTGGGTATGTTGTTGCGATACTTATCAAGTTTGAGTGCCCTGATAATTTAAGTTCGTGAGAGATATTTTTCCAAGTGAAGTTGGGCAAAAATTTATGCTGTGTACTACAGTCTACAAGGTCAAAATTATCTTTTATATATATATATATAGTAGATGTTGGATTCCCTTGGCTTTTTATGTTTGTTTCTTTATATTTTGAAAATCCTTTCTCCGGATATCAACTTGTGACCTTCATTGTGTAGGCTAATTACTTAATGCCTACATTAATTTTTCAATAATATGTATATTTATTTAGTTTTTTTTGCTTAGTATATGTAGACAATAGCCAGTTAAGAAGATAATGGTGCAGGAGTGATAGACCTTAATCTGTTGTAGCTATATAATAACTCAGCTACAGAACTTCTGTTTTCAACAAGTGAGCATCAGATACTTGGTAACCATGTGATTCTTCTGAAACAGTTGATGACTGCATCCATCTCTGCCTGCCTCTGATATTCTGTTTGCTTGATTCGTATGCATTACTATATTTTGCGAACTTAATGCGAAGATGATCGATCATTAGCAGTGTAATATATGTGCATGAACATTTTCCTTCTTCCTCTTTTCTGGTTTGATAGATGTTATTATTGCTCTCATCCTTCCTTGTGCTGAAAATCTTTCCTCAATCATTTTCTCTATGAAAGCACATCCTCCTTATCTCTCCTTAGTATTTCCACAGATTTCATGAAATCACAAATTCTGATAGATTTCTCCTTAATTCAGGTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCTCCTGTAGACTGTTG-AAGATGTACACATTATATTCAACAGTAAAGTTTAATAGA</genome_strand>
        <mrna_strand>ATGCGTCGTTACCACGTCACTGGCAGAGACGACTACCAAAA.............................................................................................GTACTCGGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAGATGACCGATTCTCTTCTAGAGAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAATCAGTGACATATATAGAACAGGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACCAGAAATATGGAGGACTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATAAGCTAGATGATTATGATGCAATGAATTGATGACTGGTGACGGATTTGTGAAGCATTTGAG-A---ATTGAATGAGGGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTTCTAGGTTGCCTTGTACCACCACCCCTCTACATTTTTGATCCTGTAGACTGTTGAAAGATGTACACATTATATTCAACAGTAAAGTTTGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263399" ref_strand="+" ref_description="SGN-E263399 [cLEG-62-F14]">
      <seq>tgatgatgttgaaagttgatatatacgtgtctgtttggcttcgattcaaagtttttggaagtttgcaaagattagactctatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctagaaaaagtaacatcgatggtcttacctttcttagttttattgatatacttttactgtttcgtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatcctgtatttgaatcactgtttcattcaagatcattatgttcttctttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttgacacagcatgttctctccgggttgaatataatatggatgatttgtacatttatggagaaatcctcagcattctccaacaatgaatggaaggagcngaaaccacactggaccaggatcttttatgtanggatattctttagtggtcaggcaattaagttgagttacatataaactctacacatgggttaattcctgagactggtcattttcttttccttttacagtatccaatctcaatgactatcaattgagttcttaatttaagatcagaaattgtataaagcaatcaaaattgtggaatttctcagactcatttttttgaagggtaattttttcattctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51278" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51578" g_stop="52068" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52898" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="719" r_length="229" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="732"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E263399" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51578" e_stop="52068"/>
          <exon e_start="52670" e_stop="52898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTT</genome_strand>
        <mrna_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTC-AAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCNGAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTANGGATATTCTTTAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTTCTCAGACTCATTTTTTTGAAGGGTAATTTTTTCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375264" ref_strand="+" ref_description="SGN-E375264 [TUS-34-L1]">
      <seq>tgatgatgttgaaagttgatatatacgtgtctgtttggcttcgattcaaaagtttttggaagtttgcaaagattagactctatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctataaaaagtaacatcgatggtcttacctttcttagttttattgatatacttttactgtttcgtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatactgtatttgaatcactggttcattcaagatcattatgtacttctttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttgacacagcgtgttctctccgggttgaatataatatggatgatatgtacatttatggagaaatcctatgcattctccaacaatgaatggaatgagcgaaaaccacactggaccatgatcttttatgtagggatattcttaagtggtcaggcaattaagttgagttacatataaactctacacatgggttaattcctgagactggtcattttcttttccttttacagtatcctatctcaatgactatcaattgagttcttaatttaagatcagaaattgtataaagcaatcaaaattgtggaattctcaagactcatttttttgaaggttaattgttttatttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51278" stop="53199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51578" g_stop="52068" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52880" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="702" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="733"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E375264" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51578" e_stop="52068"/>
          <exon e_start="52670" e_stop="52880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAG</genome_strand>
        <mrna_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTATAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATACTGTATTTGAATCACTGGTTCATTCAAGATCATTATGTACTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCGTGTTCTCTCCGGGTTGAATATAATATGGATGATATGTACATTTATGGAGAAATCCTATGCATTCTCCAACAATGAATGGAATGAGCGAAAACCACACTGGACCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCTATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254513" ref_strand="+" ref_description="SGN-E254513 [cLEG-29-C8]">
      <seq>tgatgatgttgaaagttgatatatacgtgtctgtttggcttcgattcaaaagtttttgggagtttgcaaagattagactctatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctagaaaaagtaacatcgatggtcttacctttcttagttttattgatatacttttactgtttcgtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatcctgtatttgaatcactgtttcattcaagatcattatgttcttctttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttgacacagcatgttctctccgggttgaatataatatggatgatttgtacatttatggagaaatcctcagcattctccaacaatgaatggaaggagcgaaaaccacactggaccaggatcttttatgtacggatattcttaagtggtcatgcaattaagttgagttacatataaactctacacatgggttaattcctgagactggtcattttctttttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51278" stop="53075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51578" g_stop="52068" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52776" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="598" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E254513" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51578" e_stop="52068"/>
          <exon e_start="52670" e_stop="52776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTT</genome_strand>
        <mrna_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGGAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTACGGATATTCTTAAGTGGTCATGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257758" ref_strand="+" ref_description="SGN-E257758 [cLEG-39-H4]">
      <seq>tgatgatgttgaaagttgatatatacgtgtctgtgtggcttcaattcaaaagtttttggaagtttgcaaagattagactctatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctagaaaaagtaacatcgatggtcttacctttcttagttttattgatatacttttactgtttcgtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatcctgtatttgaatcactgtttcattcaagatcattatgttcttctttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttgacacagcatgttctctccgggttgaatataatatggatgatttgtacatttatggagaaatcctcagcattctccaacaatgaatggaaggagcgaaaaccacactggaccaggatcttttatgtagggatattcttaagtggtcaggcaattaaagtgagttacatataaactctacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51278" stop="53038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51578" g_stop="52068" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52738" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="560" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E257758" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51578" e_stop="52068"/>
          <exon e_start="52670" e_stop="52738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACAT</genome_strand>
        <mrna_strand>TGATGATGTTGAAAGTTGATATATACGTGTCTGTGTGGCTTCAATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAAGTGAGTTACATATAAACTCTACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375263" ref_strand="+" ref_description="SGN-E375263 [TUS-34-L1](-)">
      <seq>tgtctgtttggcttcgattcaaaagtttttggaagtttgcaaagattagactatatttgctagagtatattaaaaagttagcagttactgtgctttgcattaggagcttaaaaggatttagtttctttctagaaaaagtaacatcgatggtcttacctttcttagttttatagatatacttttactgtttagtagtgatgaatgttgaggttcaaaaataatgttattccttctctgtttatcctgtatttgaatcactgtttcattcaagatcattatgttcttatttgttgaaatgaatatacctttcctcattgaatttatttatcatgctattgtttaagttggttaacacagcatgttctttccgggttgaatataatatggatgatttggacatttatggagaaatcctcagcattctccaacaatgaatggaaggagcgaaaaccacactggaccaggatcttttatgtagggatattcttaagtggtcaggcaattaagttgagttacatataaactctacacatgggttaattcctgagactggtcattttcttttccttttgcagtatccaatttcaaagactatcaattgagtttttaatttaagatcagaatattgtataaagcaatcaaaattgtggaattctcaagactcatttttttgaaggttaattttttcattcttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51305" stop="53200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51605" g_stop="52068" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52900" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="696" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="709"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E375263" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51605" e_stop="52068"/>
          <exon e_start="52670" e_stop="52900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAA-ATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</genome_strand>
        <mrna_strand>TGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTATATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATAGATATACTTTTACTGTTTAGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTATTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTAACACAGCATGTTCTTTCCGGGTTGAATATAATATGGATGATTTGGACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTGCAGTATCCAATTTCAAAGACTATCAATTGAGTTTTTAATTTAAGATCAGAATATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392184" ref_strand="+" ref_description="SGN-E392184 [TUS-34-M3](-)">
      <seq>ttgaatcagtgtttcattcaagatcattttcttgttttttgttgaaatgaatatacctttcttcattgaatttatttatcatgttatctgtgtaagtgggttgacacagcatgttctctcccgggtagaatataatatgggtgatctgtacatttatggagaaatcctcagctttgtccaccaaggaatggaaggagcgaaaaccacactggaccaggattttttatgtagggatatttttaagtggtcaggcaattaagttgagttacatataaactatacacatgggttaattcctgagactggtcattttcttttccttttacagtatccaatttcaatgactatcaattgagtttttaatttaagatcagaaattgtataaagcaatcaaaattgtggaattctcaagaatcatttttttgaaggttaatcttttcatttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="51554" stop="53199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51854" g_stop="52068" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52670" g_stop="52880" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="428" r_length="211" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="462"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E392184" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51854" e_stop="52068"/>
          <exon e_start="52670" e_stop="52880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTAT-TGTTTAAGTTGGTTGACACAGCATGTTCTCT-CCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAGGTGAACTTTTCTTTTGATAAATGTATTACTGATAATCTCAAAAAGATATACACTCACTTAATCCTGAATAAAGATCTGTACATGCATCAATTATATTACTCACATTGGATTATCTCTTTATAGATGCAACTGTTGGTTGGTATTTTGTGAACAAATCATTTGTATTAGTTTCTATTTGGAAATAGTTGCTTGAAAATCCAAATAAAATTACTTCAAGTCATGGGGTTTGATTTTCTTGATTGCCTTCAGAAGCCCGTTCTTGATATTTTGTAGAGGCTTTTTGGATTTGACAAGAAAAAAGATTGTTTCCTTACTGGTTTTTATTACAATTGAAGTTTCCTGTTATTTAGTAGGACAACATCTTGCCTAAACTCGCATATATGGCTTTAGAGTAATTCTGTTGAACACTTGTTAAGTTCGATACATTTGAATTTCCTCTTGAATCTTGAGAATTATAACTTCAAATATTTTTAAAAAGAATTTGCAGATTTTTTTGCTGCTTGAATTCGAGTTGTAAACCTCAGAATTTCTCTTATTTATTGTTTACTTCCTAATGCTTATGGATGGTATAATGTTTGGTGTTAATTCGATTTTATTGCAGGATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAG</genome_strand>
        <mrna_strand>TTGAATCAGTGTTTCATTCAAGATCATTTTCTTGTTTTTTGTTGAAATGAATATACCTTTCTTCATTGAATTTATTTATCATGTTATCTGTGTAAGTGGGTTGACACAGCATGTTCTCTCCCGGGTAGAATATAATATGGGTGATCTGTACATTTATGGAGAAATCCTCAGCTTTGTCCACCAAGGAATGGAAGGAGCGAAAACCACACTGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTTATGTAGGGATATTTTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTATACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATTTCAATGACTATCAATTGAGTTTTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGAATCATTTTTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356693" ref_strand="+" ref_description="SGN-E356693 [cTOS-21-I23]">
      <seq>gcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtttacatctttctgtatcgaccataacttataaccagtaaaatagcccccactttgggcagcaaaaaatttaaatagttttgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54030" stop="52842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53730" g_stop="53133" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E356693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53730" e_stop="53133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTACTTGAGTAG</genome_strand>
        <mrna_strand>GCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTTTACATCTTTCTGTATCGACCATAACTTATAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711493" ref_strand="+" ref_description="SGN-E711493 [FB02AF06]">
      <seq>cctataagaacatctgcttctgaggctgggggatcaattgagcctttctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctaatgcgaccaccttgcgaacccaagggacttccaagaatgtggaatatgatgacgagggcacaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgatgattatgtacatggtgacgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgatcttttattcccttgatacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaatagtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54168" stop="52848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53870" g_stop="53147" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E711493" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53870" e_stop="53147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCG-TCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTT</genome_strand>
        <mrna_strand>CCTATAAGAACATCTGCTTCTGAGGCTGGGGGATCAATTGAGCCTTTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAATGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAATATGATGACGAGGGCACAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGATGATTATGTACATGGTGACGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGATCTTTTATTCCCTTGATACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735759" ref_strand="+" ref_description="SGN-E735759 [LC02DF04]">
      <seq>gagggcagcaatctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E735759" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGCAATCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735334" ref_strand="+" ref_description="SGN-E735334 [LC01AD09]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E735334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735454" ref_strand="+" ref_description="SGN-E735454 [LC01CF04]">
      <seq>gagggcagacagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E735454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGACAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735550" ref_strand="+" ref_description="SGN-E735550 [LC02AD09]">
      <seq>gagggcagacagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E735550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGACAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739563" ref_strand="+" ref_description="SGN-E739563 [LC17DG08]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E739563" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739617" ref_strand="+" ref_description="SGN-E739617 [LC18AG01]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E739617" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740040" ref_strand="+" ref_description="SGN-E740040 [LC19DD01]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E740040" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737947" ref_strand="+" ref_description="SGN-E737947 [LC11DC03]">
      <seq>ccgggctgcaggaattgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="555" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="568"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E737947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740126" ref_strand="+" ref_description="SGN-E740126 [LC20AH02]">
      <seq>gagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="53990" stop="52852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53152" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E740126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713285" ref_strand="+" ref_description="SGN-E713285 [FB08AH09]">
      <seq>gtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttannaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54169" stop="52978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53869" g_stop="53282" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="618"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E713285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53869" e_stop="53282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTT</genome_strand>
        <mrna_strand>GTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202921" ref_strand="+" ref_description="SGN-E202921 [cLEB-1-F12]">
      <seq>gcacgagcaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54012" stop="52993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53719" g_stop="53293" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E202921" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53719" e_stop="53293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCT</genome_strand>
        <mrna_strand>GCACGAGCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434404" ref_strand="+" ref_description="SGN-E434404 [STM-59-L2]">
      <seq>gtttgatagaacagctgcagcgcttcttcaaggtaaaaaaatcacctagtgcgaccaccttgcaaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggaggtagtcatgaaagagagactattaaatgttaaggaaatggtagatttctcgtctgaactgttatcatggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgttctttctgggttcagtcgatgtgaggattatgtacatgctgcaatcagtggtgggaaaaactgatctatcaaagctgtttttgtgatgtgctttctggggtccgtccatgtgaggattaatggccttgtttctgctcggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54091" stop="53098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53791" g_stop="53409" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E434404" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53791" e_stop="53409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATT</genome_strand>
        <mrna_strand>GTTTGATAGAACAGCTGCAGCGCTTCTTCAAGGTAAAAAAATCACCTAGTGCGACCACCTTGCAAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGGTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGTAGATTTCTCGTCTGAACTGTTATCATGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTTCTTTCTGGGTTCAGTCGATGTGAGGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCTATCAAAGCTGTTTTTGTGATGTGCTTTCTGGGGTCCGTCCATGTGAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213012" ref_strand="+" ref_description="SGN-E213012 [cLEC-72-M2]">
      <seq>aggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54539" stop="53181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54239" g_stop="53481" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E213012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54239" e_stop="53481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATC</genome_strand>
        <mrna_strand>AGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314985" ref_strand="+" ref_description="SGN-E314985 [cTOA-31-I6]">
      <seq>gcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgccccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54492" stop="53267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54192" g_stop="53567" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E314985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54192" e_stop="53567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATT</genome_strand>
        <mrna_strand>GCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGCCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243069" ref_strand="+" ref_description="SGN-E243069 [cLEF-1-L15]">
      <seq>acagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggctggatgacatgacttcagcaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54356" stop="53269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54056" g_stop="53569" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E243069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54056" e_stop="53569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGA</genome_strand>
        <mrna_strand>ACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTGGATGACATGACTTCAGCAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319307" ref_strand="+" ref_description="SGN-E319307 [cTOB-16-F18]">
      <seq>agtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaacgtaaaaaaatcatctagtgcgaccaccttgcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54521" stop="53424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54221" g_stop="53724" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E319307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54221" e_stop="53724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACC</genome_strand>
        <mrna_strand>AGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAACGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707015" ref_strand="+" ref_description="SGN-E707015 [FA31DC09]">
      <seq>ggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="55843" stop="53463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55543" g_stop="55494" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="53763" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="572" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E707015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55543" e_stop="55494"/>
          <exon e_start="54284" e_stop="53763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTT</genome_strand>
        <mrna_strand>GGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305180" ref_strand="+" ref_description="SGN-E305180 [cLEY-18-D20]">
      <seq>ttgggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttcttctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctatgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="55846" stop="53483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55546" g_stop="55494" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="53783" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="555" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E305180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55546" e_stop="55494"/>
          <exon e_start="54284" e_stop="53783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAG</genome_strand>
        <mrna_strand>TTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTTCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTATGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709315" ref_strand="+" ref_description="SGN-E709315 [FA51BF04]">
      <seq>tcttgatggttacctcacttctttcagaatcctatgagtcgtggctgccgaatcgcgcttcctttttacaacgaggcatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgccccccaatatgtctggggctttgaaaacagagtcgggaagtacaagcacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgcctacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="54337" stop="53493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54037" g_stop="53793" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E709315" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54037" e_stop="53793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACT</genome_strand>
        <mrna_strand>TCTTGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCCGAATCGCGCTTCCTTTTTACAACGAGGCATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGCCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGCACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGCCTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427015" ref_strand="+" ref_description="SGN-E427015 [STM-47-J19]">
      <seq>aagtaaacctaaaaaagaatgggatggagcagccctaagaaataatgagacactatgcaataatcttttcccactgagaggtccatcagtaccaataggccaatatatacgctatgttgaccaatactgggattacctgaatgctcttgggcgtgctgatgggagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggctcatcaccttcttgatcatgattcttctcagcagcatatcatgatcaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactaccgttggaactcagacttctgctggtacagaggagactgtccaattcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgctcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="55992" stop="53630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55692" g_stop="55494" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="53930" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="554" r_length="355" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E427015" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55692" e_stop="55494"/>
          <exon e_start="54284" e_stop="53930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATG</genome_strand>
        <mrna_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAATGAGACACTATGCAATAATCTTTTCCCACTGAGAGGTCCATCAGTACCAATAGGCCAATATATACGCTATGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGGAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCTCATCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATCAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCGTTGGAACTCAGACTTCTGCTGGTACAGAGGAGACTGTCCAATTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCTCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706168" ref_strand="+" ref_description="SGN-E706168 [FA29AH02]">
      <seq>gttgttgctcgacctatcttggaaggtttggaagatgttgaggatgaggaagaggaaggcttggcttgcatggtttgtcgtgaaggctaccgcttgcgccctacagacttgcttggtgtttacacttatagtaaacgggttaatcttggtgttggaagccctggaaatgctcgtggggactgtgtttacacaacggtcagccatttcaacatcatacattttcagtgccatcaggaggctaaacgagcagatgcggccttaagtaaacctaaaaaagaatgggatggagcagcccttagaaataacgagacactatgcaataatcttttccctctgagaggtccatcagtaccaatagggcaatatatacgctacgttgaccaatactgggattacctgaatgctcttgggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="56252" stop="53643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55952" g_stop="55494" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="53943" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="801" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E706168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55952" e_stop="55494"/>
          <exon e_start="54284" e_stop="53943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATC</genome_strand>
        <mrna_strand>GTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484760" ref_strand="+" ref_description="SGN-E484760 [cSTE-14-N12]">
      <seq>aagtaaacctaaaaaagaatgggatggagcagccctaagaaataacgagacactatgcaataatcttttcccactgagaggtccatcagtaccaataggccaatatatacgctatgttgaccaatactgggattacctgaatgctcttgggcgtgctgatgggagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggctcatcaccttcttgatcatgattcttctcagcagcatatcatgatcaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactaccgttggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="55992" stop="53771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55692" g_stop="55494" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="54071" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="413" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E484760" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55692" e_stop="55494"/>
          <exon e_start="54284" e_stop="54071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTC</genome_strand>
        <mrna_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAACGAGACACTATGCAATAATCTTTTCCCACTGAGAGGTCCATCAGTACCAATAGGCCAATATATACGCTATGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGGAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCTCATCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATCAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCGTTGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483289" ref_strand="+" ref_description="SGN-E483289 [cSTE-8-D12]">
      <seq>ctgcaatcagccatctgaaagaaaactttgctttcactggacaggttggtttcaaatcaactgtggagtgggcctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggcttgtcaatgggccatttggcaactcaagagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgccggtgaaaatgagattggagccagggctgaaaacttgttggacacgctgtctgacaaggagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggcgacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgttgttgctcaacctgtcttggaaggtttggaagatgttgaggatgaagaagaggaaggcttggcttgcatggtttgtcgtgaaggctaccgcttgcgccctacagacttgcttggtgtttacacttatagtaaacgggttaatctttggtgttggaagccctggaaatgctcgtggggactgtgtctacacaacggtcagccatttcaacatcatacattttcagtgccatcangaggctaaacgagcagatgcggccttaagtaaacctaaaaaagaatgggatggagcagccctaagaaataacgagacactatgcaataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="57399" stop="55328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57099" g_stop="56726" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56725" i_stop="56001" i_length="725">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56000" g_stop="55628" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="748" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E483289" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57099" e_stop="56726"/>
          <exon e_start="56000" e_stop="55628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATC-TTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATC</genome_strand>
        <mrna_strand>CTGCAATCAGCCATCTGAAAGAAAACTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGGCCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGCTTGTCAATGGGCCATTTGGCAACTCAAGAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCCGGTGAAAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACGCTGTCTGACAAGGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGCGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCAACCTGTCTTGGAAGGTTTGGAAGATGTTGAGGATGAAGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTCTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCANGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAACGAGACACTATGCAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701479" ref_strand="+" ref_description="SGN-E701479 [FA16AD05]">
      <seq>gattgtcccatccatctggacttagaaagtcaaataagcagcagaggaacactgagatggtcgcaagaatattgccttacttgacgtacggggaacctgcagcaatggaagctcttgtacagcattttgaaccttgtttacagaattggcgcgaatttgataggctgcaaaaactttacgaagacaatatgaatgatgaaacaattgcgcagcaagcttcaaagcaaaaatacaccctagagaattttgttagggtttcagaatccctcaagacaagttcttgtggagagaggttgaaagatattatactggaaaaagggattactggggctgcaatcagccatctaaaagaaacctttgctttcactggacaggttggtttcaaatcaactgtggagtggacctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggtttgtcgatgggccatttagcaactcaaaagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgctggtgagaatgagattggagccagggctgaaaacttgttggacacactgtctgacaaagagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggagacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgttgttgctcgacctatcttggaaggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="57729" stop="55623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57429" g_stop="56726" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56725" i_stop="56001" i_length="725">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56000" g_stop="55923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="782" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E701479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57429" e_stop="56726"/>
          <exon e_start="56000" e_stop="55923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTG</genome_strand>
        <mrna_strand>GATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426644" ref_strand="+" ref_description="SGN-E426644 [STM-46-N14]">
      <seq>ctgcaatcagccatctgaaagaaaactttgctttcactggacaggttggtttcaaatcaactgtggagtgggcctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggcttgtcaatgggccatttggcaactcaagagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgccggtgaaaatgagattggagccagggctgaaaacttgttggacacgctgtctgacaaggagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggcgacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgntgttgctcaacctgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="57399" stop="55632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57099" g_stop="56726" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56725" i_stop="56001" i_length="725">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56000" g_stop="55932" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="443" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E426644" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57099" e_stop="56726"/>
          <exon e_start="56000" e_stop="55932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTG</genome_strand>
        <mrna_strand>CTGCAATCAGCCATCTGAAAGAAAACTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGGCCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGCTTGTCAATGGGCCATTTGGCAACTCAAGAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCCGGTGAAAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACGCTGTCTGACAAGGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGCGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGNTGTTGCTCAACCTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366845" ref_strand="+" ref_description="SGN-E366845 [cLPT-6-B15]">
      <seq>tggaaccagctgagggtattcttttgattgtggagagcttaacactagaagcaaatgagagtgataacatcagcattacttctgatgtagatgtagtctccagtgatgaagcaggtgctggtgaacaggcaaagaaaattgtactacttttccttgaaagattgtcccatccatctggacttagaaagtcaaataagcagcagaggaacactgagatggtcgctagaatattgccttacttgacgtacggggaacctgcagcaatggaagctcttgtacagcattttgaaccttgtttacagaattggcgcgaatttgataggctgcaaaaacattacgaagaaaatatgaaagatgaaacaattgcgcagcaagcttcaaagcaaaaatacaccctagagaattttgttagggtttcagaatccctcaagacaagttcttgtggagagaggttgaaagatattatactggaaaaagggattactggggctgcaatcagccatctaaaagaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="57888" stop="56772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57588" g_stop="57072" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E366845" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57588" e_stop="57072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTT</genome_strand>
        <mrna_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCTAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACATTACGAAGAAAATATGAAAGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351478" ref_strand="+" ref_description="SGN-E351478 [cTOS-12-A3]">
      <seq>tggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcagcgactgtgtttatagaagataatggctattgctagtagatatttaacctttagtgttaaagaaaaattgtagacctgctggtattacatgtgtcaggaaccaaatacctatatatagtttctgaacttctgctcaacagaagagatgaattgaacgaattcttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83647" stop="82564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83347" g_stop="82864" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E351478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83347" e_stop="82864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</genome_strand>
        <mrna_strand>TGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352317" ref_strand="+" ref_description="SGN-E352317 [cTOS-9-O17]">
      <seq>cagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcgggttcatcttgtttcgntttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcagcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83972" stop="82727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83672" g_stop="83027" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E352317" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83672" e_stop="83027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACT</genome_strand>
        <mrna_strand>CAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGGTTCATCTTGTTTCGNTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374549" ref_strand="+" ref_description="SGN-E374549 [TUS-15-B11]">
      <seq>tcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83977" stop="82733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83677" g_stop="83033" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="660"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E374549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83677" e_stop="83033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379079" ref_strand="+" ref_description="SGN-E379079 [TUS-1-L19]">
      <seq>tcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaaaaaaaaaaactcaggggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83977" stop="82733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83677" g_stop="83033" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="670"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E379079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83677" e_stop="83033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374548" ref_strand="+" ref_description="SGN-E374548 [TUS-15-B11](-)">
      <seq>tcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83837" stop="82733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83537" g_stop="83033" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="520"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E374548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83537" e_stop="83033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201788" ref_strand="+" ref_description="SGN-E201788 [cLEC-11-H9]">
      <seq>tcaatcagaaactgcagctaatccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83977" stop="82734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83677" g_stop="83034" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E201788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83677" e_stop="83034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATC</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAATCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420591" ref_strand="+" ref_description="SGN-E420591 [STM-31-B1]">
      <seq>taccttttattgaagtagcttacatatcatacaatcacttgatttcctatctaatatgtctaacaaaacataacgaaacaagatgaaacagaggataaaaattaccaaggtaaacagaaatcaagaaacaaagaagggagttaaacaaagtggagtaggtttattggagaagtacagaggcataaggaaaaagaagttgccaagctatatggcaggtgtttgtgtaactgtatttttgactaaggagaggggtttttattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="82742" stop="83604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83042" g_stop="83305" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E420591" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83042" e_stop="83305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACAAAACGAAACAAGATGAAACCGAGGATAAAAATTATAAAGGTAAACAGAAATCAAGAAACAAAGAAGGTAGTAAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGACAGGTGTTTGTGTAACTGTATTCTTGACTAAGGAGAGGGGTTCTTCTTTTGT</genome_strand>
        <mrna_strand>TACCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACATAACGAAACAAGATGAAACAGAGGATAAAAATTACCAAGGTAAACAGAAATCAAGAAACAAAGAAGGGAGTTAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGGCAGGTGTTTGTGTAACTGTATTTTTGACTAAGGAGAGGGGTTTTTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379275" ref_strand="+" ref_description="SGN-E379275 [TUS-1-L19](-)">
      <seq>ctcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatatcagataggaaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="83978" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83678" g_stop="83079" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E379275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83678" e_stop="83079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAG</genome_strand>
        <mrna_strand>CTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATCAGATAGGAAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287740" ref_strand="+" ref_description="SGN-E287740 [cLES-9-L24]">
      <seq>caagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84111" stop="83104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83811" g_stop="83404" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E287740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83811" e_stop="83404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCT</genome_strand>
        <mrna_strand>CAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485596" ref_strand="+" ref_description="SGN-E485596 [cSTE-18-P9]">
      <seq>gtcgcagtagaatgtgcagactcagtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagcaaacatgtcaagaaaatcaagggatgttctgtgaagctgattaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttctcttcatctcaaatcgagaaaacaagggactcacatcttctctgctggtttcttcactttcaaacctctcaaccagccagatctctgtagccaaaagccaagcatccaaaattcaaaaaagaaactaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttacccaccaattcaagatccaccagcgcagggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaagctgcagctaagccaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84495" stop="83347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84195" g_stop="83647" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E485596" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84195" e_stop="83647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTT</genome_strand>
        <mrna_strand>GTCGCAGTAGAATGTGCAGACTCAGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGCAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATTAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCTCTTCATCTCAAATCGAGAAAACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAACCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAATTCAAAAAAGAAACTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCACCAATTCAAGATCCACCAGCGCAGGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAGCTGCAGCTAAGCCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371214" ref_strand="+" ref_description="SGN-E371214 [TUS-28-J9]">
      <seq>tttcgacttcacaggcagagaatactaggcataggcatcactcaaccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccctccaattcaagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaaactgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84721" stop="83361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84421" g_stop="84299" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84298" i_stop="84204" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84203" g_stop="83661" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="666" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E371214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84421" e_stop="84299"/>
          <exon e_start="84203" e_stop="83661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAG</genome_strand>
        <mrna_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427223" ref_strand="+" ref_description="SGN-E427223 [STM-48-C3]">
      <seq>gtcgcagtagaatgtgcagactcagtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagcaaacatgtcaagaaaatcaagggatgttctgtgaagctgattaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttctcttcatctcaaatcgagaaaacaagggactcacatcttctctgctggtttcttcactttcaaacctctcaaccagccagatctctgtagccaaaagccaagcatccaaaattcaaaaaagaaactaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttacccaccaattcaagatccaccagcgcagggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84495" stop="83377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84195" g_stop="83677" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E427223" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84195" e_stop="83677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCT</genome_strand>
        <mrna_strand>GTCGCAGTAGAATGTGCAGACTCAGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGCAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATTAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCTCTTCATCTCAAATCGAGAAAACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAACCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAATTCAAAAAAGAAACTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCACCAATTCAAGATCCACCAGCGCAGGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271922" ref_strand="+" ref_description="SGN-E271922 [cLEM-8-A15]">
      <seq>tttcgacttcacaggcagagaatgggaggcataggcatcactgggccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccctccaattcaagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84721" stop="83445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84421" g_stop="84299" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84298" i_stop="84204" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84203" g_stop="83745" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="582" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E271922" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84421" e_stop="84299"/>
          <exon e_start="84203" e_stop="83745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCC</genome_strand>
        <mrna_strand>TTTCGACTTCACAGGCAGAGAATGGGAGGCATAGGCATCACTGGGCCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202523" ref_strand="+" ref_description="SGN-E202523 [cLEC-6-L5]">
      <seq>acaggcagagaatactaggcataggcatcactcaaccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="84711" stop="83518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84411" g_stop="84299" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84298" i_stop="84204" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84203" g_stop="83818" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="499" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E202523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84411" e_stop="84299"/>
          <exon e_start="84203" e_stop="83818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCT</genome_strand>
        <mrna_strand>ACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244429" ref_strand="+" ref_description="SGN-E244429 [cLEF-3-A4]">
      <seq>aagaacatttttcattgcgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagtattgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgggaagattatgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcattattgtttcatagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93223" stop="95739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93523" g_stop="93635" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="452" r_length="339" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95439" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="476" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E244429" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93523" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGA</genome_strand>
        <mrna_strand>AAGAACATTTTTCATTGCGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTATTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGGGAAGATTATGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATTATTGTTTCATAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745998" ref_strand="+" ref_description="SGN-E745998 [GI|47105404]">
      <seq>gattgttcattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatttgtctgccaaaatcactggatctgatactattttatatctgttccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93229" stop="99294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93528" g_stop="93635" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="447" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="874" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96144" g_stop="96253" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="984" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98613" g_stop="98995" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1367" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1368" polyA_stop="1383"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E745998" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1367</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93528" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95842"/>
          <exon e_start="96144" e_stop="96253"/>
          <exon e_start="98613" e_stop="98995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAC</genome_strand>
        <mrna_strand>GATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243782" ref_strand="+" ref_description="SGN-E243782 [cLED-35-H23]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttaccaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagggacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93235" stop="95827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93535" g_stop="93635" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95527" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="552" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E243782" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93535" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACCAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGGACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243916" ref_strand="+" ref_description="SGN-E243916 [cLED-35-L13]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93235" stop="95827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93535" g_stop="93635" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95527" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="552" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E243916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93535" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233482" ref_strand="+" ref_description="SGN-E233482 [cLED-9-C11]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93235" stop="95797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93535" g_stop="93635" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95497" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="522" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E233482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93535" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCAT</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241647" ref_strand="+" ref_description="SGN-E241647 [cLED-36-P11]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93235" stop="94958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93535" g_stop="93635" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E241647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93535" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391521" ref_strand="+" ref_description="SGN-E391521 [TUS-16-E21]">
      <seq>atagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93245" stop="95900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93545" g_stop="93635" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="430" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95600" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="615" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E391521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93545" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTC</genome_strand>
        <mrna_strand>ATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203796" ref_strand="+" ref_description="SGN-E203796 [cLEC-17-P17]">
      <seq>tagaaaaaataaaaaagaaaccctgggacctctgaaatggtctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacaaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaagtacaacatctttgagctcctcagcatcccttgataactcactatctgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93246" stop="95823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93546" g_stop="93635" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="429" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95523" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="537" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E203796" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93546" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATG</genome_strand>
        <mrna_strand>TAGAAAAAATAAAAAAGAAACCCTGGGACCTCTGAAATGGTCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACAAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAAGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205236" ref_strand="+" ref_description="SGN-E205236 [cLEC-16-P24]">
      <seq>tagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaaatttttctgaaggtcttggtcatgaagggcatcaactcattcaaggtttcctgcagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93246" stop="94756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93546" g_stop="93635" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94456" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="235" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E205236" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93546" e_stop="93635"/>
          <exon e_start="94312" e_stop="94456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCT</genome_strand>
        <mrna_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAAATTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAAGGTTTCCTGCAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201837" ref_strand="+" ref_description="SGN-E201837 [cLEC-11-N14]">
      <seq>aattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93281" stop="95752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93581" g_stop="93635" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="394" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95452" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="431" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E201837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93581" e_stop="93635"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCA</genome_strand>
        <mrna_strand>AATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542546" ref_strand="+" ref_description="SGN-E542546 [TUS-63-O15](-)">
      <seq>attagatggttatggatgcaaaacttgtaagaatataacttacggaaaatgcaattgggcaccctctctcttcaggaaaccctgaatgagttgatgcccttcatgaccaagaccttcagaaaaaatttcaaaaactgttgtgtatcacctgtacaagtaaagaacaactatcatatatgcattgatggagaaatacatggatggtctacctcgagtgacacaagaaaattacagcttccgaagaatgaaataaataagcttacagtttaaatttgatatgtgagcaagcaaaatcacattaaattcaaatttataaacagcttctttggcataatccagctgcctaacactcaacaaattgcaataaaataaaaaaacataaatagatggacactataaatttgcagggaattattcttaattcctaatcttaaacaccacttgtgagaacttaattctcaaattgttatcatcatcttaatttctttaataagaagcaaagggaactctcatacaacagtgttaaagacacagctaaaccgaaaacaagaaaaaattaaaacaaaaaatgatcaacaaaacaacaccaacagtgatcaagaatcaagaaaatcaagatttctacaattcaaatcaagaaattgcattatcgatccctaaaaaacagaactttaccgtgaaaatctctgcatcaaccgattccgatgaaacccatttcagttcataacagtttacaatcgattaaagctccaatcagtaggagatagataaaagtgagcgtaaaatacagtgataaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94759" stop="93351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94459" g_stop="93658" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E542546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94459" e_stop="93658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</genome_strand>
        <mrna_strand>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703406" ref_strand="+" ref_description="SGN-E703406 [FA21BF06]">
      <seq>atcgattgtaaactgttatgaactgaaatgggtttcatcggaatcggttgatgcagagattttcacggtgatacacaacagtttttgaaatttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaaccaaaaataatgacaaaatgctctcaccacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="93418" stop="96493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93718" g_stop="93784" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93785" i_stop="94311" i_length="527">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94312" g_stop="94650" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="405" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="832" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96144" g_stop="96193" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="881" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E703406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93718" e_stop="93784"/>
          <exon e_start="94312" e_stop="94650"/>
          <exon e_start="95416" e_stop="95842"/>
          <exon e_start="96144" e_stop="96193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTC</genome_strand>
        <mrna_strand>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAA-TTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAA-CCAAAAATAATGACAAAATGCTCTCACCACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207320" ref_strand="+" ref_description="SGN-E207320 [cLEC-30-B18]">
      <seq>ttttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94005" stop="95899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94305" g_stop="94650" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95599" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="530" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E207320" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94305" e_stop="94650"/>
          <exon e_start="95416" e_stop="95599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCT</genome_strand>
        <mrna_strand>TTTTCAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613990" ref_strand="+" ref_description="SGN-E613990 [63771]">
      <seq>tttcaggtgacacacagcaattttaaaaagaatttattaaggtcttgatcatgaagggcatcaactcattcagagtgtcctgaagagagagggtgcccaattgcattttccgtagttcttactgtgacaagttttgcatccataaccatccaatcacaagaattgaggattgccaatgatagccttgaaaggtttttgagttcggacatttgattgaagacagcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcatatgccttcgatgttttgttcaaaacttcttgcacatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagttcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgccgatccaagatacttccgcttgcaacgcgatgggctagtctcaagaagggagaaaggctcaagtcactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggtaataaatggaaggagtctgtatgtgaagaaggatcaaaagaacataattccaagtcattgaaactctcaaacagtaaacaactactgaattactcaaatttgttattcttcagaagatgaagatgtcttgccctacatgtcttgaaagaaatatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94032" stop="96145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94306" g_stop="94650" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="770" r_length="426" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E613990" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94306" e_stop="94650"/>
          <exon e_start="95416" e_stop="95842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTC-AACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTC-TGCCCGACATGTCTTGAAG</genome_strand>
        <mrna_strand>TTTCAGGTGACACACAGCAATTTTAAAAAGAATTTATTAAGGTCTTGATCATGAAGGGCATCAACTCATTCAGAGTGTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAGTTCTTACTGTGACAAGTTTTGCATCCATAACCATCCAATCACAAGAATTGAGGATTGCCAATGATAGCCTTGAAAGGTTTTTGAGTT-CGGACATTTGATTGAAGACAGCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCATATGCCTTCGATGTTTTGTTCAAAACTTCTTGCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGTTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCCGATCCAAGATACTTCCGCTTGCAACGCGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGTAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAACATAATTCCAAGTCATTGAAACTCTCAAACAG-T-AAACAACTACTGA-ATTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTTGCCCTACATGTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689772" ref_strand="+" ref_description="SGN-E689772 [LH_Ea01M10]">
      <seq>ccatttatcactctttttctgaaggtcttggtcatgaaggccttcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgccaatgatagccgtggaaggtttttgagttacggacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgcgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcacatgtatgcatcattgtttcatacaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagccactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattcccagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94033" stop="96101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94323" g_stop="94650" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95801" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="714" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E689772" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94323" e_stop="94650"/>
          <exon e_start="95416" e_stop="95801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTA</genome_strand>
        <mrna_strand>CCATTTATCACTCTTTTTCTGAAGGTCTTGGTCATGAAGGCCTTCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGCCAATGATAGCCGTGGAAGGTTTTTGAGTTACGGACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGCGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATACAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGCCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCCAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261379" ref_strand="+" ref_description="SGN-E261379 [cLEG-57-G18]">
      <seq>agtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagatatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94024" stop="96145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94324" g_stop="94650" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="754" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E261379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94324" e_stop="94650"/>
          <exon e_start="95416" e_stop="95842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG</genome_strand>
        <mrna_strand>AGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337727" ref_strand="+" ref_description="SGN-E337727 [cTOE-17-L2]">
      <seq>gtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94025" stop="95984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94325" g_stop="94650" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95470" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="381" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95471" i_stop="95540" i_length="70">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95541" g_stop="95684" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="525" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E337727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94325" e_stop="94650"/>
          <exon e_start="95416" e_stop="95470"/>
          <exon e_start="95541" e_stop="95684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTT</genome_strand>
        <mrna_strand>GTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG......................................................................ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200244" ref_strand="+" ref_description="SGN-E200244 [cLEC-12-A23]">
      <seq>tcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="94071" stop="95754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94371" g_stop="94650" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95454" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="319" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E200244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94371" e_stop="94650"/>
          <exon e_start="95416" e_stop="95454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATT</genome_strand>
        <mrna_strand>TCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693612" ref_strand="+" ref_description="SGN-E693612 [LH_Ea01M10](-)">
      <seq>tgtatgcatcattgtttcatagaggagaacaacatgccattgtttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagccactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgccatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccactttcacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctctagtcgtggatgaaaccagaaggagataagggcaacaactaataacccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattattgttcaatgtaactctctgtttggaaaagtggagttcatattgatcatttgatgcaccggaaccctatatgaaagtnctttatgtaattttgtttgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="95115" stop="130748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95343" g_stop="95344" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95345" i_stop="95415" i_length="71">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95416" g_stop="95842" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="429" r_length="427" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96144" g_stop="96253" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="539" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98613" g_stop="98886" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="820" r_length="281" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98887" i_stop="99199" i_length="313">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.136" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99200" g_stop="99208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="829" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E693612" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95343" e_stop="95344"/>
          <exon e_start="95416" e_stop="95842"/>
          <exon e_start="96144" e_stop="96253"/>
          <exon e_start="98613" e_stop="98886"/>
          <exon e_start="99200" e_stop="99208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTA-----C--TGT-TCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAACGTCATAGGGTGCAATATCCTGAAATGCTTTTATTTTAAGTCTATTTTCTAATGATGATTGCATATATATAATGTTGTACCATGTAAAGATAATAACTCAAACAACTGATGCAATATAATGTACTATGAAAAACAACTATACGATGCAAATATCATTTCAATTATGTCACATAAATCTCTCAACCTTCAATGGAAATTAAAACAGAAGTAATTA</genome_strand>
        <mrna_strand>TG.......................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGTTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGCCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGCCATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTTCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTCTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAATAACCCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTATTGTTCAATGTAACTCTCTGTTTGGAAAAGTGGAGTTCATATTGATCATTTGATGCACCGGAACCCTATATGAAAGTNCTTTATGTAATTTTG-TTTGATTAAAAAA.........................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542549" ref_strand="-" ref_description="SGN-E542549 [TUS-63-O15]">
      <seq>tcaaggtacaacatctttgagctcttcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="95166" stop="99248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95466" g_stop="95842" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96144" g_stop="96253" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="487" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98613" g_stop="98948" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="823" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E542549" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95466" e_stop="95842"/>
          <exon e_start="96144" e_stop="96253"/>
          <exon e_start="98613" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTT</genome_strand>
        <mrna_strand>TCAAGGTACAACATCTTTGAGCTCTTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336850" ref_strand="+" ref_description="SGN-E336850 [cTOE-5-G19]">
      <seq>agatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaacccagaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="95266" stop="99032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95566" g_stop="95842" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96144" g_stop="96253" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="387" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98613" g_stop="98732" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="507" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E336850" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95566" e_stop="95842"/>
          <exon e_start="96144" e_stop="96253"/>
          <exon e_start="98613" e_stop="98732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCA</genome_strand>
        <mrna_strand>AGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCCAGAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301111" ref_strand="-" ref_description="SGN-E301111 [cLEW-22-C13]">
      <seq>gaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="95843" stop="99247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96143" g_stop="96253" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98613" g_stop="98947" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="446" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E301111" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301111" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96143" e_stop="96253"/>
          <exon e_start="98613" e_stop="98947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATT</genome_strand>
        <mrna_strand>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595917" ref_strand="+" ref_description="SGN-E595917 [39200]">
      <seq>tgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttactcataaaaagctctagtcgtggatgaaaccagcaggagataagggcaacaactaataaaccagaaaagctaatcaatgtaaagtcattgtgaatatctgtccagctaaatgtgtgaccatacatcagtaaaaatgaaatttttgttcaatgcaactttctgtttggaactttcgagttcatattgatcgtttgatgcaacagaaaacagtttcaaagcactttatgtaatcttgttttgatttgatgaatggtttctcccagtgtatagcacattgttcctactttcacaatttgaatgttggcacatttgtctgccaaaatcactatagtatttatacattgatctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="95871" stop="99270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96171" g_stop="96253" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98613" g_stop="98964" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="443" r_length="360" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E595917" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96171" e_stop="96253"/>
          <exon e_start="98613" e_stop="98964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTC--T----C--TCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</genome_strand>
        <mrna_strand>TGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTACTCATAAAAAGCTCTAGTCGTGGATGAAACCAGCAGGAGATAAGGGCAACAACTAATAAACCAGAAAAGCTAATCAATGTAAAGTCATTGTGAATATCTGTCCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTTTTGTTCAATGCAACTTTCTGTTTGGAACTTTCGAGTTCATATTGATCGTTTGATGCAACAGAAAACAGTTTCAAAGCACTTTATGTAATCTTGTTTTGATTTGATGAATGGTTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAATTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543265" ref_strand="+" ref_description="SGN-E543265 [TUS-64-P22](-)">
      <seq>ggaaaaagaacttcataaagctatagcgtaacccagtgatcagtatgatttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101279" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100979" g_stop="100924" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="174" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="218" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="344" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="429" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="486" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99132" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="792" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99131" i_stop="98986" i_length="146">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98985" g_stop="98979" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="799" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E543265" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100979" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99132"/>
          <exon e_start="98985" e_stop="98979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATATTGCATCAGTTGTTTGAGTTATTATCTTTACATGGTACAACATTATATATATGCAATCATCATTAGAAAATAGACTTAAAATAAAAGCATTTCAGGATATTGCACCCTATGACGTTGGAACAGATATAAA</genome_strand>
        <mrna_strand>GGAAAAAGAA-CTTCATAAAGCTATAGCGTAACCCAGTGATCAGTATGA-TTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA..................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714623" ref_strand="+" ref_description="SGN-E714623 [FB11DH07]">
      <seq>ggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggactaacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101372" stop="98809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101072" g_stop="100924" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="269" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="313" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="524" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="581" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99108" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="911" r_length="330" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E714623" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101072" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</genome_strand>
        <mrna_strand>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTAAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373684" ref_strand="+" ref_description="SGN-E373684 [TUS-33-G6](-)">
      <seq>tcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcatagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101154" stop="98809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100939" g_stop="100924" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="180" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="306" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="391" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="448" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99108" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="778" r_length="330" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E373684" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100939" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</genome_strand>
        <mrna_strand>TCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226938" ref_strand="+" ref_description="SGN-E226938 [cLEL-26-N11](-)">
      <seq>gtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="100347" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="100" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="157" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99437" g_stop="99132" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="463" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="477"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E226938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220778" ref_strand="+" ref_description="SGN-E220778 [cLEL-22-H21](-)">
      <seq>ttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="99873" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99573" g_stop="99530" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99437" g_stop="99132" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="350" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="364"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220778" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99573" e_stop="99530"/>
          <exon e_start="99437" e_stop="99132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>TTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221161" ref_strand="+" ref_description="SGN-E221161 [cLEL-22-H21](-)">
      <seq>tcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="99862" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99562" g_stop="99530" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99437" g_stop="99132" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="339" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="353"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E221161" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99562" e_stop="99530"/>
          <exon e_start="99437" e_stop="99132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>TCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226603" ref_strand="+" ref_description="SGN-E226603 [cLEL-26-N11](-)">
      <seq>gaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="100287" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99987" g_stop="99961" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99437" g_stop="99137" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="385" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="404"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E226603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99987" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATC</genome_strand>
        <mrna_strand>GAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257687" ref_strand="+" ref_description="SGN-E257687 [cLEG-39-G12]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101055" stop="98931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="100722" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99437" g_stop="99231" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="553" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E257687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCG</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546448" ref_strand="+" ref_description="SGN-E546448 [TUS-69-N3](-)">
      <seq>agaagtttatccgaattgatatcagttcggatactgtgtgcccctgtgctttgtggggaaaagaaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttgttgaagctgcaagaaaggttggtgtggaaggagcagctgacttccttgaagatcccaataatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatccaagcttttctagctgcttcaaatgtcacagcatagttcttctccaacttcatttaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaaatgaaatattctatcagtattataaatgcctgtactctagtttaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101336" stop="98937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101036" g_stop="100924" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="232" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="276" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="402" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="487" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="544" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99240" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="742" r_length="198" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="763" polyA_stop="773"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E546448" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101036" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATAT</genome_strand>
        <mrna_strand>AGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCT-GTGCTTTGTGGGGAAAAGAAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTGTTGAAGCTGCAAGAAAGGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAATAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATCCAAGCTTTTCTAGCTGCTTCAAATGTCACAGCATAGTTCTTCTCCAACTTCATTTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAATGAAATATTCTATCAGTATTATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342000" ref_strand="+" ref_description="SGN-E342000 [cTOF-10-G2]">
      <seq>agaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtatatttccacagcttctatccaatagccaactggagagtctgtcttctatttttcttgctcgtttcctttctcgcagaacattcactgaggggtgtgtgggtgtgggtgtaagtagtactgctggagaactgctaaagacagtagtaaagcagcccatctcaattatatctgtacttggcattatgactagtattttgtcctgctccttgatggacctagtcattcatatcacatgttacctaattttcagtacctcatgctcactactactactacttccccaatcccccctgcaggttggctcgtcagtaggatagatcacaattttataaatatttaaagtaaattttgttggttttgggtatgtgaaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="100345" stop="98943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100045" g_stop="99530" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99437" g_stop="99243" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="711" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E342000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100045" e_stop="99530"/>
          <exon e_start="99437" e_stop="99243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATA</genome_strand>
        <mrna_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245622" ref_strand="+" ref_description="SGN-E245622 [cLEF-43-N1]">
      <seq>ttttgagattaagtggcatccgtttcttctccacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatgggatacaacatgttaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101149" stop="98955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100930" g_stop="100924" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="127" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="171" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="297" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="382" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="439" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99255" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="622" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E245622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100930" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCG</genome_strand>
        <mrna_strand>TTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCCACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGGATACAACATGTTAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546407" ref_strand="+" ref_description="SGN-E546407 [TUS-69-M3]">
      <seq>cgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttgttgaagctgcaagaaaggttggtgtggaaggagcagctgacttccttgaagatcccaataatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatccaagcttttctagctgcttcaaatgtcacagcatagttcttctccaacttcattttagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101361" stop="98965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101061" g_stop="100924" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="258" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="302" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="428" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="513" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="570" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99437" g_stop="99265" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="743" r_length="173" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E546407" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101061" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGT</genome_strand>
        <mrna_strand>CGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTGTTGAAGCTGCAAGAAAGGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAATAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATCCAAGCTTTTCTAGCTGCTTCAAATGTCACAGCATAGTTCTTCTCCAACTTCATTTTAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276225" ref_strand="+" ref_description="SGN-E276225 [cLEN-21-H6]">
      <seq>aagaaagattactacagaaataagtttttatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101087" stop="99033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100787" g_stop="100722" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="110" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="236" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="321" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99437" g_stop="99333" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="483" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E276225" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100787" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</genome_strand>
        <mrna_strand>AAGAAAGATTACTACAGAAATAAGTTTTTATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255064" ref_strand="+" ref_description="SGN-E255064 [cLEG-31-K14]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101055" stop="99033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="100722" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99437" g_stop="99333" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="451" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E255064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619425" ref_strand="+" ref_description="SGN-E619425 [70114]">
      <seq>atttatatgctttcattgaatctccgaaaattcctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggctggaatacagcatgtcaggacttacgggaagtagtctggacagccacaggctactatattttgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttcttggctatttcacacagggaaggtatataggtgacagggaatttcttatcgaagctgcaagaaaggtcggtatagaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatccaatatatcaggcgtcccacattttgtgttacatggcaagtaccagttgagcggtggccaactccagagagcttcatccaagcttttcaagctgcttcaaatgtcacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102086" stop="99056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101786" g_stop="101740" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="195" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="359" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="485" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="570" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="627" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99437" g_stop="99357" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="707" r_length="80" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E619425" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101786" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</genome_strand>
        <mrna_strand>ATTTATATGCTTTCATTGAATCTCCGAAAATTCCTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGCTGGAATACAGCATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTTGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTTGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................GGAATTTCTTATCGAAGCTGCAAGAAAGGTCGGTATAGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCCAATATATCAGGCGTCCCACATTTTGTG............................................................................................TTACATGGCAAGTACCAGTTGAGCGGTGGCCAA-CTCCAGAGAGCTTCATCCAAGCTTTTCAAGCTGCTTCAAATGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257796" ref_strand="+" ref_description="SGN-E257796 [cLEG-39-G13]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtccgaggtttttaacggccttgggatggaatacaacatgtcaggacttactggaagtaatctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaagcgtcccacattttgtgctaaaaggcaagtaccagttgagcggtggccaacctccaaagagtttcatacgagcttttcaagctgcttcaaatgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101055" stop="99057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="100722" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99437" g_stop="99357" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E257796" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCCGAG....................................................................................................GTTTTTAACGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................TGGAAGTAATCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAAGCGTCCCACATTTTGTG............................................................................................CTAAAAGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAAAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543266" ref_strand="+" ref_description="SGN-E543266 [TUS-64-P22]">
      <seq>ctcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctnaatggcaagtaccagttgagcggtggccaacctcccagagagttcatancggagctttcagctgcttcaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102190" stop="99061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101890" g_stop="101740" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="299" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="419" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="463" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="589" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="674" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="731" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99437" g_stop="99361" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="808" r_length="77" r_score="0.844"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E543266" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101890" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCT-CCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGT</genome_strand>
        <mrna_strand>CTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTNAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCCAGAGAG-TTCATANCGGAGCTTTCAGCTGCTTCAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373685" ref_strand="+" ref_description="SGN-E373685 [TUS-33-G6]">
      <seq>tccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102064" stop="99073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101764" g_stop="101740" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="173" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="293" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="337" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="463" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="548" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="605" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99437" g_stop="99373" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="670" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E373685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101764" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
          <exon e_start="99437" e_stop="99373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGC</genome_strand>
        <mrna_strand>TCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252848" ref_strand="+" ref_description="SGN-E252848 [cLEG-16-I10]">
      <seq>atttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102157" stop="99230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101857" g_stop="101740" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="266" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="430" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="556" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="641" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99530" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="698" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E252848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101857" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG</genome_strand>
        <mrna_strand>ATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461699" ref_strand="+" ref_description="SGN-E461699 [cPRO-9-E22]">
      <seq>aaactaatcaagatttaagaagaataagaagaggcaaattctggttacggcccaaaagagtctttcctaatttatatgctttcattgaatctccgaaaaatcctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccatctgcacctaaagaagggattaacaagaaaaattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggtcttgggctggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatattttgcaggacaacaggggcctgacaagcaaaataatcttgctgaggagctttttcttggctatttcacacagggaaggtatataggtgacagggaatttcttatcgaagctgcaagaaaggtcggtatagaaggagcagctgacttccttgaagatccccaacatgggctaaaggaggtgaatgaagagcttcagcaacactcatccaatatatcaggcgtcccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102132" stop="99234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101828" g_stop="101740" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="116" r_length="88" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="264" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="384" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="428" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="554" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="639" r_length="85" r_score="0.894"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99586" g_stop="99534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="692" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E461699" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101828" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99961"/>
          <exon e_start="99586" e_stop="99534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTT</genome_strand>
        <mrna_strand>AAGAGGCAAATTCTGGTTACGG-CCCAAAAGAGTCTTTCCTAATTTATATGCTTTCATTGAATCTCCGAAAAATCCTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCATCTGCACCTAAAGAAGGGATTAACAAGAAAAATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGTCTTGGGCTGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTTGCAGGACAACAGGGGCCTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTTGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................GGAATTTCTTATCGAAGCTGCAAGAAAGGTCGGTATAGAAGGAGCAGCTGACTTCCTTGAAGATCCCCAACATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCCAATATATCAGGCGTCCCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205609" ref_strand="+" ref_description="SGN-E205609 [cLEC-21-F5]">
      <seq>tggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102115" stop="99669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101815" g_stop="101740" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="224" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="344" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="388" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="514" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="99969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="591" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E205609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101815" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="99969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGC</genome_strand>
        <mrna_strand>TGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337771" ref_strand="+" ref_description="SGN-E337771 [cTOE-17-H9]">
      <seq>ccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102175" stop="99703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101875" g_stop="101740" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="284" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="448" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="574" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="100003" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="617" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E337771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101875" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="100003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGA</genome_strand>
        <mrna_strand>CCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305525" ref_strand="+" ref_description="SGN-E305525 [cLEX-14-A1]">
      <seq>tccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102064" stop="99708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101764" g_stop="101740" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="173" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="293" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="337" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="463" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100045" g_stop="100008" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="501" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E305525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101764" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
          <exon e_start="100045" e_stop="100008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGG</genome_strand>
        <mrna_strand>TCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264845" ref_strand="+" ref_description="SGN-E264845 [cLEG-71-E22]">
      <seq>ttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattntgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaaataagtttggatctcgctctgaacaaatgatgtcaaaaatggtcggagggtttttaagggnccttgggatggaatacaacatgtcaggacttaacgggaagtagtctggacagccacaggctataatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctattnncacagggaaggtatataggtgacagagaatttcttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102222" stop="100067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101922" g_stop="101740" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="331" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="454" r_length="123" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="0.909"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="0.91"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100492" g_stop="100367" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="625" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E264845" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101922" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAG-AAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT-GTCGGA-GGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGG-CCTTGGGATGGAATACAACATGTCAGGACTT-ACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG</genome_strand>
        <mrna_strand>TTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTNTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAAAATGGTCGGAGG....................................................................................................GTTTTTAAGGGNCCTTGGGATGGAATACAACATGTCAGGACTTAAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTATAATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTA-TTNNCACAGGGAAGGTATATAGGTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358737" ref_strand="+" ref_description="SGN-E358737 [cLHT-24-G9]">
      <seq>gattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="101360" stop="100103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101060" g_stop="100924" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="257" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100621" g_stop="100578" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="301" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100492" g_stop="100403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="391" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E358737" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101060" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100578"/>
          <exon e_start="100492" e_stop="100403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCT</genome_strand>
        <mrna_strand>GATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560997" ref_strand="+" ref_description="SGN-E560997 [20737]">
      <seq>aagaggcaaattctggttacgggcccaaaagagtctttcctaatttatatgctttcattgaatctccgaaaattctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtggatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataaagtttgggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102128" stop="100415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101828" g_stop="101740" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100722" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100">
            <donor d_prob="0.932" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100621" g_stop="100610" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="371" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E560997" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101828" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100722"/>
          <exon e_start="100621" e_stop="100610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGT-GATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAAT-AAGTTT-GGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGC</genome_strand>
        <mrna_strand>AAGAGGCAAATTCTGGTTACGGGCCCAAAAGAGTCTTTCCTAATTTATATGCTTTCATTGAATCTCCGAAAATT-CTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAAGTTTGGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334809" ref_strand="+" ref_description="SGN-E334809 [cTOE-3-P18]">
      <seq>ttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102227" stop="100428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101927" g_stop="101740" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="336" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100728" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="450" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E334809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101927" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATG</genome_strand>
        <mrna_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303988" ref_strand="+" ref_description="SGN-E303988 [cLEX-4-P20]">
      <seq>tcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102189" stop="100429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101889" g_stop="101740" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="298" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100841" g_stop="100729" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E303988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101889" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
          <exon e_start="100841" e_stop="100729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT</genome_strand>
        <mrna_strand>TCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334921" ref_strand="+" ref_description="SGN-E334921 [cTOE-3-P6]">
      <seq>ttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="102227" stop="100624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101927" g_stop="101740" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101071" g_stop="100924" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="336" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E334921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101927" e_stop="101740"/>
          <exon e_start="101071" e_stop="100924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG</genome_strand>
        <mrna_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302656" ref_strand="+" ref_description="SGN-E302656 [cLEX-1-C20]">
      <seq>aggaattggcagtcctgtcctccctccatccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103277" stop="105742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103577" g_stop="103689" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="377" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="571" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="619" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105400" g_stop="105442" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="662" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E302656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103577" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTC</genome_strand>
        <mrna_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324745" ref_strand="+" ref_description="SGN-E324745 [cTOC-8-L20]">
      <seq>aggaattggcagtcctgtcctccctccatccaatttctgtggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103277" stop="105256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103577" g_stop="103689" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="377" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104956" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="538" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E324745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103577" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCA</genome_strand>
        <mrna_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTGTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315045" ref_strand="+" ref_description="SGN-E315045 [cTOB-4-O6]">
      <seq>gcagtcctgtcctccctccatcctatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattggttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggccaacgggtcggagagggaaagagaggagtttgaggatcccaaaacacctttctccacagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaaccaatttggtcaactgggtgacggaactgaaaatgctatgaagcacccctagaaagtgaaacaattgccatctgaatttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103285" stop="105187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103585" g_stop="103689" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="369" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104887" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="461" r_length="92" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E315045" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103585" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATT</genome_strand>
        <mrna_strand>GCAGTCCTGTCCTCCCTCCATCCTATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGGTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCCAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACACCTTTCTCCACAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACCAATTTGGTCAACTGGGTGACGGAACTGAAAATGCTATGAAGCACCCCTAGAAAGTGAAACAATTGCCATCTGAATTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549535" ref_strand="+" ref_description="SGN-E549535 [TUS-71-F1]">
      <seq>gtcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcaactcggagactttgggtttggggacagaaccaggggatcaattacccacgactcttttggggtgccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103288" stop="105412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="104071" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="507" r_length="478" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="701" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105075" g_stop="105112" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="739" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E549535" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-----AT-TGT--TTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTC</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAACTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGGATCAATTACCCACGACTCTTTTGGGGTGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361795" ref_strand="+" ref_description="SGN-E361795 [cLPP-12-O7]">
      <seq>tcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103289" stop="104293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="103993" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="428" r_length="400" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E361795" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="103993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-----AT-TGT--TTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGA</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543743" ref_strand="+" ref_description="SGN-E543743 [TUS-65-L12]">
      <seq>atttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaagccttcaaggcccttgtgtaattaatggatatgctagaattcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103309" stop="106139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="345" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="539" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="587" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="660" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105689" g_stop="105839" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="811" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E543743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</genome_strand>
        <mrna_strand>ATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAAGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGAATTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304310" ref_strand="+" ref_description="SGN-E304310 [cLEX-12-O1]">
      <seq>tttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103310" stop="105280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103610" g_stop="103689" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104980" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="529" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E304310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103610" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGA</genome_strand>
        <mrna_strand>TTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345846" ref_strand="+" ref_description="SGN-E345846 [cTOF-24-C19]">
      <seq>gatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103522" stop="106139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103822" g_stop="104071" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="444" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="492" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="565" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105689" g_stop="105839" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="716" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E345846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103822" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</genome_strand>
        <mrna_strand>GATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326651" ref_strand="+" ref_description="SGN-E326651 [cTOC-17-K4]">
      <seq>tgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgccttgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttgnnggtggangtcaggctgggcaatttgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="104575" stop="107959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104875" g_stop="104989" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="163" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="236" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105689" g_stop="105860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107377" g_stop="107659" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="694" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E326651" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104875" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105860"/>
          <exon e_start="107377" e_stop="107659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCC-TGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTG-GGGTGGAGGTCAGGCTGGGCAA-TTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTT</genome_strand>
        <mrna_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGNNGGTGGANGTCAGGCTGGGCAATTTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327219" ref_strand="+" ref_description="SGN-E327219 [cTOC-19-G21]">
      <seq>tgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="104575" stop="107945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104875" g_stop="104989" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="163" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="236" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105689" g_stop="105860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107377" g_stop="107645" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="677" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E327219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104875" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105860"/>
          <exon e_start="107377" e_stop="107645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATAC</genome_strand>
        <mrna_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548928" ref_strand="+" ref_description="SGN-E548928 [TUS-65-L12](-)">
      <seq>caaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgttccagatggtgtgcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107137" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107437" g_stop="107808" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="564" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108427" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="790" r_length="226" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E548928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107437" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAAT</genome_strand>
        <mrna_strand>CAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547434" ref_strand="+" ref_description="SGN-E547434 [TUS-71-F1](-)">
      <seq>ccattaaatggattcttttcttgcaagctcaatgaatctgagatgatgctccgaaatattccagtgttggttgttccagatggtgtgcaactcgttgcatgtgggcattcacacacacttatttctgctaaagacggacgaatacatggatggggttataactgctacggtcaagcggctaatgagaagtctacatatgcctggtatccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagttgtgtgaatttaggcttgcagaaacagtgaatccatccaacgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaatataccaaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgcagcaggagtgctgctgcatcattaagttaatacaaaacatctacttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107285" stop="108714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107585" g_stop="107808" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="416" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108370" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="586" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="648"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E547434" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107585" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACC-AATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTAT</genome_strand>
        <mrna_strand>CCATTAAATGGATTCTTTTCTTGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATTCCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGGCATTCACACACACTTATTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTACGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTATCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGTTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAACGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAATATACCAAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539819" ref_strand="+" ref_description="SGN-E539819 [TUS-59-M10]">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107372" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107672" g_stop="107808" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108428" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="556" r_length="227" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E539819" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107672" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539817" ref_strand="+" ref_description="SGN-E539817 [TUS-59-M10](-)">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattcaaattagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107372" stop="108719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107672" g_stop="107808" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108427" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="555" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E539817" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107672" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAAT</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTCAAATTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539810" ref_strand="+" ref_description="SGN-E539810 [TUS-59-M6](-)">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107372" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107672" g_stop="107808" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108413" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="541" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="564"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E539810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107672" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACA</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284801" ref_strand="+" ref_description="SGN-E284801 [cLES-3-N2]">
      <seq>aactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggcggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgacggagcattactacaatgatgatgagtttggtctgagaaatcattgatgggcgttaaatatgtaacataccaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107373" stop="108576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107673" g_stop="107808" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="328" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108276" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="403" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E284801" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107673" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAA</genome_strand>
        <mrna_strand>AACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGCGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAC...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGAGAAATCATTGATGGGCGTTAAATATGTAACATACCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284803" ref_strand="-" ref_description="SGN-E284803 [cLES-3-N20]">
      <seq>tgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgttttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaaaaaaaaaaatcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107655" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107955" g_stop="108086" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108202" g_stop="108419" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="350" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="SGN-E284803" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284803" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107955" e_stop="108086"/>
          <exon e_start="108202" e_stop="108419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</genome_strand>
        <mrna_strand>TGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGTTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747421" ref_strand="+" ref_description="SGN-E747421 [GI|47104541]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgtttccatcacattctcaccaccaacttcctaaccttacaattgggggggcttttggaggaatgaacagagatggatcgggtcaggctcatcactatccgggttcaaataacaataataataattcctcattgataccgccatggatgctccgccacgtcagcaacgaaggatgaaataatattccggagagtataattaattaattgtatatgttttgttccaaacaatattaatcaactttcctgtttgtgatgtataattagcttaagctaataaaacttttcatccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113602" stop="108192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113302" g_stop="113044" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109047" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108960" g_stop="108854" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="694" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108853" i_stop="108739" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108738" g_stop="108492" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="941" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="956"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E747421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113302" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109047"/>
          <exon e_start="108960" e_stop="108854"/>
          <exon e_start="108738" e_stop="108492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGGGTACGTACGAATAAATTTTACACTATCAGATTACCTAAAAAACATAATCATTGCGACATATAATTGCTTAACAACAAAATGTTTTCTGTATCCATATATTATATGTGTTGATCAGGGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG...................................................................................................................GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393942" ref_strand="+" ref_description="SGN-E393942 [TUS-39-M16]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaggctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113602" stop="108595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113302" g_stop="113044" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109047" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108960" g_stop="108895" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="653" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E393942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113302" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109047"/>
          <exon e_start="108960" e_stop="108895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTT</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAGG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394025" ref_strand="+" ref_description="SGN-E394025 [TUS-41-N15]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113602" stop="108738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113302" g_stop="113044" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109047" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108960" g_stop="108952" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="596" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E394025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113302" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109047"/>
          <exon e_start="108960" e_stop="108952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAA</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689189" ref_strand="+" ref_description="SGN-E689189 [t3_tus_80_H20]">
      <seq>ggaaagcaagatgatttttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctnagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtaaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttactggcttataattttttttttgtttattttttgattttagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="111297" stop="108759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110997" g_stop="110405" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="658" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="758" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="800" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109088" g_stop="109059" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="830" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E689189" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110997" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTG</genome_strand>
        <mrna_strand>GGAAAGCAAGATGATTTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTNAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305490" ref_strand="+" ref_description="SGN-E305490 [cLEX-15-F2]">
      <seq>ctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113601" stop="108761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113301" g_stop="113044" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="337" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="402" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="502" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="544" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109061" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="572" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E305490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113301" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACT</genome_strand>
        <mrna_strand>CTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324579" ref_strand="+" ref_description="SGN-E324579 [cTOC-9-N23]">
      <seq>gaaagcaagatgatgtttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctaagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtgaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="111296" stop="110222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110996" g_stop="110522" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E324579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110996" e_stop="110522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACT</genome_strand>
        <mrna_strand>GAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTGAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252375" ref_strand="-" ref_description="SGN-E252375 [cLEG-12-O9]">
      <seq>aaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctgtgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggttatcgttgtgaaccattttcttggcataaaaacaaacttgtttgcttgaaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="123208" stop="122334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122908" g_stop="122634" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="289"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E252375" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122908" e_stop="122634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</genome_strand>
        <mrna_strand>AAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTGTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTTATCGTTGTGAACCATTTTCTTGGCATAAAAACAAACTTGTTTGCTTGAAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553876" ref_strand="+" ref_description="SGN-E553876 [cTSC-2-I12]">
      <seq>caaacacattaggtccaccaggacacaaatgatgcttgaccagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="124179" stop="122339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123879" g_stop="123858" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="64" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="106" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="246" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122959" g_stop="122639" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="567" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E553876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123879" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>CAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGACCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554189" ref_strand="+" ref_description="SGN-E554189 [cTSC-3-I12]">
      <seq>acaaacacaattaagtccaaccaaagacacaaatgatagcttgaccaacatttctgatcttcaaacgtggggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="124085" stop="122339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="71" r_length="45" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.76"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="113" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="253" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122959" g_stop="122639" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="574" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E554189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATGAT-GCTTGATCAGC-TTTCTGATCTTCAAAC-TAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>ACACAAATGATAGCTTGACCAACATTTCTGATCTTCAAACGTGGG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219689" ref_strand="+" ref_description="SGN-E219689 [cLEL-24-E13](-)">
      <seq>ggcaccaggcaactcttccctgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="123260" stop="122338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123208" g_stop="123178" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.774"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122959" g_stop="122639" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="351" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E219689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123208" e_stop="123178"/>
          <exon e_start="122959" e_stop="122639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>GGCACCAG-GCAACTCTTCCCTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220025" ref_strand="+" ref_description="SGN-E220025 [cLEL-24-E13](-)">
      <seq>ggcaccaggcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="123502" stop="122338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123208" g_stop="123178" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122959" g_stop="122639" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="351" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123208" e_stop="123178"/>
          <exon e_start="122959" e_stop="122639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>GGCACCAG-GCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556026" ref_strand="+" ref_description="SGN-E556026 [cTSD-2-C6]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatataaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125508" stop="122366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122665" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="770" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E556026" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATAT</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552517" ref_strand="+" ref_description="SGN-E552517 [cTSB-4-C6]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatataaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125508" stop="122366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122666" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="769" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E552517" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746752" ref_strand="+" ref_description="SGN-E746752 [GI|24967142]">
      <seq>ctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctctgtgatgctgaagttgctctactcgttttctccaatcgtggaaaactctatgaattctgcagcacgagcaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctctattttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgatgatgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127267" stop="122366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126967" g_stop="126672" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="375" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="440" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="540" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="582" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="624" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="764" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122669" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="1055" r_length="291" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1056" polyA_stop="1081"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E746752" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1055</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126967" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>CTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTCTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCCAATCGTGGAAAACTCTATGAATTCTGCAGCACGAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTCTATTTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555046" ref_strand="+" ref_description="SGN-E555046 [cTSC-6-D9]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgannaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125508" stop="122369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122669" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="766" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="787"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E555046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557053" ref_strand="+" ref_description="SGN-E557053 [cTSD-3-D22]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125508" stop="122369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122669" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="766" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E557053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744728" ref_strand="+" ref_description="SGN-E744728 [GI|17432173]">
      <seq>ctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127447" stop="122384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127147" g_stop="126672" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="555" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="620" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="720" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="762" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="804" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="944" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122691" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1213" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1214" polyA_stop="1231"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E744728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127147" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAA</genome_strand>
        <mrna_strand>CTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708385" ref_strand="+" ref_description="SGN-E708385 [FA35CE03]">
      <seq>ccaatgatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaactttgttgctggaaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127179" stop="122403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126881" g_stop="126672" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="354" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="454" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="496" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="538" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="678" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122703" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="934" r_length="256" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E708385" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126881" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTT</genome_strand>
        <mrna_strand>CCAATGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTTGTTGC-TGGAAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253482" ref_strand="+" ref_description="SGN-E253482 [cLEG-24-C19]">
      <seq>cagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125181" stop="122429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124881" g_stop="124822" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="160" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="202" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="244" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123320" g_stop="123178" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="387" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122959" g_stop="122729" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="618" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E253482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124881" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123320" e_stop="123178"/>
          <exon e_start="122959" e_stop="122729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAA</genome_strand>
        <mrna_strand>CAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242786" ref_strand="+" ref_description="SGN-E242786 [cLED-31-D21]">
      <seq>aagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125453" stop="122500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125153" g_stop="125125" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="94" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="236" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="278" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="418" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122800" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="578" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E242786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125153" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAAC</genome_strand>
        <mrna_strand>AAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747498" ref_strand="+" ref_description="SGN-E747498 [GI|32478028]">
      <seq>catgaaatgtcgntgctgtgcgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127059" stop="122575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126760" g_stop="126672" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="168" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="233" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="333" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="375" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="417" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="557" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122875" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="642" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E747498" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126760" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTG</genome_strand>
        <mrna_strand>CATGAAATGTCGRTGCTGTGCGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697641" ref_strand="+" ref_description="SGN-E697641 [FA03CG02]">
      <seq>acgacgctagggtttgcatttctttccaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127286" stop="122588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126982" g_stop="126672" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="316" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="395" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="460" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="560" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="602" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123320" g_stop="123178" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="787" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122888" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="859" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E697641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126982" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123320" e_stop="123178"/>
          <exon e_start="122959" e_stop="122888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACC</genome_strand>
        <mrna_strand>CTAGGGTTTGCATTTCTTTC-CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705941" ref_strand="+" ref_description="SGN-E705941 [FA28CC07]">
      <seq>ttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctaaagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaccaaatgcccaaaacgtgaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127269" stop="122596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126969" g_stop="126672" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="377" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="442" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="542" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="584" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="626" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="766" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122896" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="830" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E705941" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126969" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGT</genome_strand>
        <mrna_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAAAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTACCAAATGCCCAAAACGTGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703495" ref_strand="+" ref_description="SGN-E703495 [FA21CF09]">
      <seq>aattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcaggntttcttccaacctctagaagtgcactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127354" stop="122611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127054" g_stop="126672" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="462" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="527" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="627" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="669" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="851" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122911" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="900" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E703495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127054" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAG-AGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCC</genome_strand>
        <mrna_strand>AATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGNTTTCTTCCAACCTCTAGAAGTGC-ACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262928" ref_strand="+" ref_description="SGN-E262928 [cLEG-59-F6]">
      <seq>aaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaaaagcatggggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127188" stop="122616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126888" g_stop="126672" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="361" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="461" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="503" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="686" r_length="141" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122915" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="731" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E262928" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126888" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCAT--GGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAA</genome_strand>
        <mrna_strand>AAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAA-AAGCATGGGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707488" ref_strand="+" ref_description="SGN-E707488 [FA33AF05]">
      <seq>ccctatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127387" stop="122637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127088" g_stop="126672" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="496" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="561" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="661" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="703" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="745" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="885" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122937" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="908" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E707488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127088" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAA</genome_strand>
        <mrna_strand>CCCTATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704409" ref_strand="+" ref_description="SGN-E704409 [FA24AH03]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttganagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctncattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtggcactcttccttgcaaattgggtacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127340" stop="122875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127040" g_stop="126672" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="448" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="513" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="613" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="655" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="697" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="837" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122959" g_stop="122953" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="844" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E704409" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127040" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGAT</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGANAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTNCATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGGCACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220254" ref_strand="+" ref_description="SGN-E220254 [cLEL-12-C17](-)">
      <seq>agcagcttagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttgagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtaaattctaccatattcattctatatatatcttaatttttaatttatcctatctattttacatctgcccattagttcacaagtgagattttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125183" stop="122766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124883" g_stop="124822" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="160" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="202" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="244" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123317" g_stop="123066" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="496" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220254" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124883" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</genome_strand>
        <mrna_strand>AGCAGCT-TAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTG-AGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220164" ref_strand="+" ref_description="SGN-E220164 [cLEL-12-C17](-)">
      <seq>aaagtctcaattatggtcagcagcaacatcctcaatcacagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtaaattctaccatattcattctatatatatcttaatttttaatttatcctatctattttacatctgcccattagttcacaagtgagattttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="123562" stop="122766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123262" g_stop="123066" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220164" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123262" e_stop="123066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</genome_strand>
        <mrna_strand>AAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCACAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707966" ref_strand="+" ref_description="SGN-E707966 [FA34BH04]">
      <seq>cccttgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127387" stop="122882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127087" g_stop="126672" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="495" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="560" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="660" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="702" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="744" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123182" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="880" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E707966" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127087" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAA</genome_strand>
        <mrna_strand>CCCTTGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708100" ref_strand="+" ref_description="SGN-E708100 [FA34DD09]">
      <seq>caataacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127395" stop="122915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127096" g_stop="126672" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="504" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="569" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="669" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="753" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123215" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="856" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E708100" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127096" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCT</genome_strand>
        <mrna_strand>CAATAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240971" ref_strand="+" ref_description="SGN-E240971 [cLED-24-F19]">
      <seq>aagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125453" stop="122924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125153" g_stop="125125" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="94" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="236" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="278" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123224" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="372" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E240971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125153" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTC</genome_strand>
        <mrna_strand>AAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708521" ref_strand="+" ref_description="SGN-E708521 [FA36AA06]">
      <seq>cagtagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127421" stop="122930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127122" g_stop="126672" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="595" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="695" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="737" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="779" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123320" g_stop="123230" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="870" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E708521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127122" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123320" e_stop="123230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTC</genome_strand>
        <mrna_strand>CAGTAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704566" ref_strand="+" ref_description="SGN-E704566 [FA24CF02]">
      <seq>gttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127329" stop="122951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127029" g_stop="126672" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="437" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="502" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="602" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="686" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123320" g_stop="123251" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="756" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E704566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127029" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123320" e_stop="123251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATT</genome_strand>
        <mrna_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256647" ref_strand="+" ref_description="SGN-E256647 [cLEG-40-E23]">
      <seq>agttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatgggggtggtgagtgagcaaaggtctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127142" stop="122952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126842" g_stop="126672" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="250" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="415" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="499" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123252" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="568" r_length="69" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E256647" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126842" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCAT-GGGGTGGTG-GTGAGCAAA-GTCTCAAT</genome_strand>
        <mrna_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGGTGGTGAGTGAGCAAAGGTCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706022" ref_strand="+" ref_description="SGN-E706022 [FA28DB09]">
      <seq>gttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaacggatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127329" stop="122963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127029" g_stop="126672" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="437" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="502" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="602" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.95"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="686" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123320" g_stop="123263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="744" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E706022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127029" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123320" e_stop="123263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGC</genome_strand>
        <mrna_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAACGGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710802" ref_strand="+" ref_description="SGN-E710802 [FA56DB05]">
      <seq>taaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgccaacaagcatggggtggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127396" stop="122966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127096" g_stop="126672" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="504" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="569" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="669" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="753" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123317" g_stop="123266" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="806" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E710802" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127096" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATG-CAACAAGCATGGGGTGGTGGTG</genome_strand>
        <mrna_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCCAACAAGCATGGGGTGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698426" ref_strand="+" ref_description="SGN-E698426 [FA06BA12]">
      <seq>cgatacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccangaacacaatgatgcttgatcagctttctgatcttncaactaaggagaaattgtggaatgaggctaaccaggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127393" stop="123328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127095" g_stop="126672" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="503" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="568" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="668" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="710" r_length="42" r_score="0.857"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123628" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="742" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E698426" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127095" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCT</genome_strand>
        <mrna_strand>CGATACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCANG..............................................................................AACACAATGATGCTTGATCAGCTTTCTGATCTTNCAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACCAGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578068" ref_strand="+" ref_description="SGN-E578068 [LE08DF03]">
      <seq>aaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacanatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127393" stop="123437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127093" g_stop="126672" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="501" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="566" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="666" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="708" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123638" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="730" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E578068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127093" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTA</genome_strand>
        <mrna_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACANATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263868" ref_strand="+" ref_description="SGN-E263868 [cLEG-73-A2]">
      <seq>agttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127142" stop="123437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126842" g_stop="126672" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="250" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="415" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123644" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="473" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E263868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126842" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATG</genome_strand>
        <mrna_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242467" ref_strand="+" ref_description="SGN-E242467 [cLED-30-C11]">
      <seq>tagccaagagaagaaattagtgagaaaataaagtctaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagatgatagaaaacatgataaatagacaagtgacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccataaagtgcatctatggaacattggaggtcaatcgatcaatcaaagataatgatcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagtgggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttacctctaacacattatgtccaccaggacacacatgatgcttgatcagctttctgatcttcaaactaaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127217" stop="123437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126917" g_stop="126672" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="326" r_length="80" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="391" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="491" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="533" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123659" g_stop="123653" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="540" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E242467" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126917" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCA-AAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAAT</genome_strand>
        <mrna_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTCTAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGATGATAGAAAACATGATAAATAGACAAGTGACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCATAAAGTGCATCTATGGAACATTGGAGGTCAATCGATCAATCAAAGATAATGAT..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTGGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTACCTCTAACACATTATGTCCACCAGG..............................................................................ACACACATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334238" ref_strand="+" ref_description="SGN-E334238 [cTOD-21-L20]">
      <seq>gcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127454" stop="123440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127154" g_stop="126672" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="562" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="627" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="727" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123740" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="766" r_length="39" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E334238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127154" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTA</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTC-AACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259474" ref_strand="+" ref_description="SGN-E259474 [cLEG-42-M1]">
      <seq>gttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaacctatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127269" stop="123449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126970" g_stop="126672" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="379" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="444" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="544" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123749" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="575" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E259474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126970" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAA-CTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATC</genome_strand>
        <mrna_strand>GTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACCTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255907" ref_strand="+" ref_description="SGN-E255907 [cLEG-35-H6]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127268" stop="123449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126968" g_stop="126672" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123749" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="572" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E255907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126968" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATC</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232028" ref_strand="+" ref_description="SGN-E232028 [cLED-7-K24]">
      <seq>caattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127261" stop="123454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126961" g_stop="126672" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="369" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="434" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="534" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123754" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="560" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E232028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126961" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTC</genome_strand>
        <mrna_strand>CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220117" ref_strand="-" ref_description="SGN-E220117 [cLEL-12-J22](-)">
      <seq>tggttgtttcagtttgttagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatactttcctcaaacacattaggtccaccaggacacaaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127255" stop="123549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126955" g_stop="126672" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="363" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="428" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="528" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123779" g_stop="123767" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="541" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220117" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="126955" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGC</genome_strand>
        <mrna_strand>TGGTTGTTTCAGTTTGTTAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTTCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256808" ref_strand="+" ref_description="SGN-E256808 [cLEG-40-K6]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatactttcctcaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127268" stop="123572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126968" g_stop="126672" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123872" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="527" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E256808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126968" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACA</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTTCCTCAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249855" ref_strand="+" ref_description="SGN-E249855 [cLEF-57-M18]">
      <seq>aaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127395" stop="123586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127095" g_stop="126672" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="503" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="568" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123886" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="640" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E249855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127095" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATAC</genome_strand>
        <mrna_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717846" ref_strand="+" ref_description="SGN-E717846 [FC02DF09]">
      <seq>gtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcataaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatggggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127288" stop="123591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126988" g_stop="126672" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="396" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="461" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123891" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E717846" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126988" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTA</genome_strand>
        <mrna_strand>GTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCATAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATGGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259037" ref_strand="+" ref_description="SGN-E259037 [cLEG-41-M1]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127268" stop="123605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126968" g_stop="126672" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123905" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="494" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E259037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126968" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATC</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231244" ref_strand="+" ref_description="SGN-E231244 [cLED-5-J21]">
      <seq>aaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127339" stop="123610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127039" g_stop="126672" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="447" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="512" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123910" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="560" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E231244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127039" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGA</genome_strand>
        <mrna_strand>AAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248546" ref_strand="+" ref_description="SGN-E248546 [cLEF-59-H6]">
      <seq>ggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127413" stop="123611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127113" g_stop="126672" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="586" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123911" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="633" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E248546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127113" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG</genome_strand>
        <mrna_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259917" ref_strand="+" ref_description="SGN-E259917 [cLEG-51-A2]">
      <seq>ttggttgtttcagtaggagagaaaagaggatctatgagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccacatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatacatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127256" stop="123613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126956" g_stop="126672" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="364" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="429" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123913" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="474" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E259917" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126956" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCT</genome_strand>
        <mrna_strand>TTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTATGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCACATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATACATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241612" ref_strand="+" ref_description="SGN-E241612 [cLED-36-O9]">
      <seq>agagaagaaattagtgagaaaataacgtggaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggatcgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127211" stop="123634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126911" g_stop="126672" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="319" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="384" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123934" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="408" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E241612" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126911" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGG</genome_strand>
        <mrna_strand>AGAGAAGAAATTAGTGAGAAAATAACGTGGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATCGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257028" ref_strand="+" ref_description="SGN-E257028 [cLEG-44-C20]">
      <seq>ggatcccccgggctgcaggttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127269" stop="123636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126978" g_stop="126672" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="317" r_length="308" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="396" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="461" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123957" g_stop="123936" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="483" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E257028" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126978" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGCA-TTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTG</genome_strand>
        <mrna_strand>GGGCTGCAGGTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249093" ref_strand="+" ref_description="SGN-E249093 [cLEF-49-L5]">
      <seq>actttttctctctctaaacattgaaattcaaccaaaacaaaaaggaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127378" stop="124522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127078" g_stop="126672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="486" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="551" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E249093" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127078" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</genome_strand>
        <mrna_strand>ACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAGGAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237974" ref_strand="+" ref_description="SGN-E237974 [cLED-18-F7]">
      <seq>aaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccatatatgagtcgctgcagcgatatcaaagacaccttcttggaaatgagttggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127345" stop="124522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127045" g_stop="126672" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="453" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="518" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E237974" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127045" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</genome_strand>
        <mrna_strand>AAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCATATATGAGTCGCTGCAGCGATATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326734" ref_strand="+" ref_description="SGN-E326734 [cTOC-25-E17]">
      <seq>taaagctctaaggtatctaaatttggagtacctaagcaaattctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaaactcaaagccaaatatgagtcgctgcagcgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127489" stop="124526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127189" g_stop="126672" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="597" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124826" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="659" r_length="62" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E326734" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127189" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTG-AAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</genome_strand>
        <mrna_strand>TAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATTCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272794" ref_strand="+" ref_description="SGN-E272794 [cLEM-21-L6]">
      <seq>aaaacaaaagttgattagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127338" stop="124526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127038" g_stop="126672" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="446" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124826" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="507" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E272794" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127038" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</genome_strand>
        <mrna_strand>AAAACAAAAGTTGATTAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329854" ref_strand="+" ref_description="SGN-E329854 [cTOD-3-P3]">
      <seq>aagaagataggaagaaatgccatagataaaaacaacccatgttgactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127422" stop="124527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127122" g_stop="126672" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124827" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="590" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E329854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127122" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATAT</genome_strand>
        <mrna_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTGACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310415" ref_strand="+" ref_description="SGN-E310415 [cTOA-10-A12]">
      <seq>ggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgcgctttgtgatgctgaagttgctctactcgttttctctaatcgcggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127413" stop="124553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127113" g_stop="126672" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125125" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124853" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="555" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E310415" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127113" e_stop="126672"/>
          <exon e_start="125203" e_stop="125125"/>
          <exon e_start="124886" e_stop="124853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAG</genome_strand>
        <mrna_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGCGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGCGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233741" ref_strand="+" ref_description="SGN-E233741 [cLED-14-K13]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127340" stop="124844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127040" g_stop="126672" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125144" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E233741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127040" e_stop="126672"/>
          <exon e_start="125203" e_stop="125144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCG</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239952" ref_strand="+" ref_description="SGN-E239952 [cLED-29-D23]">
      <seq>agagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127144" stop="124848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126844" g_stop="126672" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125148" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="229" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E239952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126844" e_stop="126672"/>
          <exon e_start="125203" e_stop="125148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCA</genome_strand>
        <mrna_strand>AGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319441" ref_strand="+" ref_description="SGN-E319441 [cTOB-15-F10]">
      <seq>caaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgcggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127453" stop="124867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127153" g_stop="126672" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125167" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="519" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E319441" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127153" e_stop="126672"/>
          <exon e_start="125203" e_stop="125167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGC</genome_strand>
        <mrna_strand>CAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGCGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220508" ref_strand="-" ref_description="SGN-E220508 [cLEL-12-J22](-)">
      <seq>tggttgtttcagtaggagagagaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127255" stop="124870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126955" g_stop="126672" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125170" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="318" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E220508" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="126955" e_stop="126672"/>
          <exon e_start="125203" e_stop="125170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGC</genome_strand>
        <mrna_strand>TGGTTGTTTCAGTAGGAGAGAGAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231068" ref_strand="+" ref_description="SGN-E231068 [cLED-5-B4]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127340" stop="124877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127040" g_stop="126672" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125177" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="396" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E231068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127040" e_stop="126672"/>
          <exon e_start="125203" e_stop="125177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCA</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231123" ref_strand="+" ref_description="SGN-E231123 [cLED-5-A17]">
      <seq>taggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127415" stop="124884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127115" g_stop="126672" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125184" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="463" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E231123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127115" e_stop="126672"/>
          <exon e_start="125203" e_stop="125184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATA</genome_strand>
        <mrna_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAG-AAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319419" ref_strand="+" ref_description="SGN-E319419 [cTOB-15-J23]">
      <seq>gcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaattatgctcaaaacacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127454" stop="124886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127154" g_stop="126672" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125186" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="502" r_length="19" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E319419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127154" e_stop="126672"/>
          <exon e_start="125203" e_stop="125186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAG-TATGCTCAAAACACTTGA</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCTCAAAACACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397746" ref_strand="+" ref_description="SGN-E397746 [TUS-46-M16]">
      <seq>ttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaagaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127269" stop="126400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126969" g_stop="126700" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E397746" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126969" e_stop="126700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAA</genome_strand>
        <mrna_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAGAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326298" ref_strand="+" ref_description="SGN-E326298 [cTOC-14-E4]">
      <seq>taaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaaccattgaaattcaaccaaaacaaaaaaccaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttttttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataagaaggagggatgggtagaggaagagcttagctgaacaggatagaaaaccagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgcgatgctgaagttgctctactcgatttctctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127424" stop="126406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127124" g_stop="126706" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E326298" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127124" e_stop="126706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAA-CATTGAAATTCAACCAAAACAAAAAA-CAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATC</genome_strand>
        <mrna_strand>TAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACCATTGAAATTCAACCAAAACAAAAAACCAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTTTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAAGAAGGAGGGATGGGTAGAGGAAGAGCTTAGCTGAACAGGATAGAAAACCAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGCGATGCTGAAGTTGCTCTACTCGATTTCTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378475" ref_strand="+" ref_description="SGN-E378475 [TUS-46-M16]">
      <seq>gtagaaaaagatcatcagaggaaggagggatgggtataggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcagagaggagaaatggattgctcnaaaaagcttatgaactatctgtgctttgtgatgctgaagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127185" stop="126426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126885" g_stop="126726" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E378475" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126885" e_stop="126726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGC</genome_strand>
        <mrna_strand>GTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTATAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAGAGAGGAGAAATGGATTGCTCNAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233327" ref_strand="+" ref_description="SGN-E233327 [cLED-9-G21]">
      <seq>gctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127485" stop="126433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127185" g_stop="126733" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E233327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127185" e_stop="126733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTG</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242119" ref_strand="+" ref_description="SGN-E242119 [cLED-37-G4]">
      <seq>gctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127485" stop="126440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127185" g_stop="126740" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E242119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127185" e_stop="126740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275494" ref_strand="+" ref_description="SGN-E275494 [cLEN-10-K15]">
      <seq>aaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127393" stop="126440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127093" g_stop="126740" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E275494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127093" e_stop="126740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</genome_strand>
        <mrna_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240115" ref_strand="+" ref_description="SGN-E240115 [cLED-32-M4]">
      <seq>taggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127415" stop="126451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127115" g_stop="126751" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E240115" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127115" e_stop="126751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTAT</genome_strand>
        <mrna_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAG-AAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319557" ref_strand="+" ref_description="SGN-E319557 [cTOB-15-J19]">
      <seq>gcaaatcctaaagttgaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127454" stop="126458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127154" g_stop="126758" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E319557" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127154" e_stop="126758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTAT</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTGAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238217" ref_strand="+" ref_description="SGN-E238217 [cLED-22-E12]">
      <seq>tagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgcagaggattgataacaagataaattgactagtcacttttgcatagaggagaaattggattgctcaaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127217" stop="126461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126917" g_stop="126761" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E238217" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126917" e_stop="126761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAA-TGGATTGCTCAAAAAAGCT</genome_strand>
        <mrna_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGCAGAGGATTGATAACAAGATAAATTGACTAGTCACTTTTGCATAGAGGAGAAATTGGATTGCTCAAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238239" ref_strand="+" ref_description="SGN-E238239 [cLED-22-M18]">
      <seq>ccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagggagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127386" stop="126543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127086" g_stop="126843" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E238239" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127086" e_stop="126843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAG</genome_strand>
        <mrna_strand>CCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGGGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390523" ref_strand="+" ref_description="SGN-E390523 [TUS-40-D21]">
      <seq>ctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttttttcacaattttggttgtttcagtaagagagaaaagaggatctaatagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcacaggaaggagggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127425" stop="126554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127125" g_stop="126854" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E390523" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127125" e_stop="126854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATG</genome_strand>
        <mrna_strand>CTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTTTTTCACAATTTTGGTTGTTTCAGTAAGAGAGAAAAGAGGATCTAATAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCACAGGAAGGAGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239829" ref_strand="+" ref_description="SGN-E239829 [cLED-29-F15]">
      <seq>aacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcacgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127392" stop="126564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127092" g_stop="126864" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E239829" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127092" e_stop="126864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCA-GAGGA</genome_strand>
        <mrna_strand>AACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCACGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321022" ref_strand="+" ref_description="SGN-E321022 [cTOB-13-P19]">
      <seq>gaggtaaagctcttaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagaataggaagaaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127489" stop="126572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127193" g_stop="126872" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E321022" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127193" e_stop="126872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAAGCTC-TAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAG-ATAGGAAGAA-ATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCA</genome_strand>
        <mrna_strand>GAGGTAAAGCTCTTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGAATAGGAAGAAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238315" ref_strand="+" ref_description="SGN-E238315 [cLED-17-I17]">
      <seq>gctctaaggtatctaaatttggagtacctaagcatatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127485" stop="126599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127185" g_stop="126899" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SGN-E238315" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127185" e_stop="126899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTA</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCATATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>258</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="420" PGL_stop="1293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="420" e_stop="787"/>
            <exon e_start="889" e_stop="1293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="420" e_stop="787" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="788" i_stop="888" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="889" e_stop="1293" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="420" stop="787"/>
              <exon start="889" stop="1265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="421" stop="787"/>
              <exon start="889" stop="1293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG : GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCC</gDNA_template>
            <first_frame> Q  E  *  S  F  G  K  T  R  C  Y  T  V  D  C  *  L  W  N  *  K  C  S  S  W  T  N  N  K  E  A  Q  A  S  *  E  V  *  C  Y  *  S  Q  T  F  S  R  I  H  W  S  *  F  T  S  R  R  C  G  S  S  A  V  E  T  F  S  K  I  P  *  Y  *  *  *  S  G  I  Q  R  R  *  C  I  T  *  K  S  N  E  E  G  K  E  K  K  A  K  E  G  S  W  S  R  Q  T  I  I  S  E  E  *  E  G  L  Q  F  L  G  S  S  *  R :   A  I  R  *  R  T  H  L  T  E  *  S  S  W  L  L  N  G  R  D  F  D  R  L  T  H  N  *  L  W  D  G  V  A  R  L  T  D  C  *  W  I  M  *  L  N  S  I  Y  S  L  V  *  D  L  I  L  R  K  S  F  T  G  T  S  E  R  E  H  L  L  F  E  E  K  K  R  N  R  K  R  E  D  T  R  A  G  L  *  S  H  S  P  T  L  A  P  V  P  S  V  N  K  N  L  T  P  S  *  L  N  C  I  *  R  L  T  R  K  G  *  R  *  *  E  N  V  L  V  M  Q  C  F  V   </first_frame>
            <second_frame>  R  N  K  V  L  V  K  P  D  A  T  Q  L  T  A  D  S  G  I  E  S  A  A  P  G  L  I  I  R  K  R  K  Q  V  E  K  S  D  V  T  E  V  K  H  S  Q  E  S  T  G  A  D  L  Q  A  E  D  A  V  A  L  L  L  K  H  S  Q  R  Y  H  S  T  D  D  E  V  E  S  S  G  G  D  V  S  H  E  S  Q  T  R  K  E  K  K  K  K  Q  K  K  V  L  G  P  D  R  P  S  F  L  K  S  E  K  D  Y  N  S  W  V  P  P  E   : G  Q  S  G  D  G  R  T  S  L  N  D  R  L  G  Y  *  M  V  E  I  L  I  V  *  H  I  T  N  Y  G  M  G  *  L  G  L  Q  I  A  D  G  S  C  N  *  I  A  F  T  A  W  F  E  I  S  S  C  E  N  P  S  Q  G  H  L  S  E  N  I  C  C  L  K  R  R  K  E  I  E  N  V  K  I  Q  E  L  D  Y  D  P  I  L  P  L  L  L  L  Y  L  L  L  T  R  T  *  H  L  P  D  *  I  V  Y  R  D  *  L  G  K  D  R  D  N  E  K  M  C  L  *  C  N  A  L  C  </second_frame>
            <third_frame>   G  I  K  F  W  *  N  Q  M  L  H  S  *  L  L  T  L  E  L  K  V  Q  L  L  D  *  *  *  G  S  A  S  K  L  R  S  L  M  L  L  K  S  N  I  L  K  N  P  L  E  L  I  Y  K  Q  K  M  R  *  L  C  C  *  N  I  L  K  D  T  I  V  L  M  M  K  W  N  P  A  E  V  M  Y  H  M  K  V  K  R  G  R  K  R  K  K  S  K  R  R  F  L  V  Q  T  D  H  H  F  *  R  V  R  R  I  T  I  L  G  F  L  L  K  :  G  N  Q  V  T  D  A  P  H  *  M  I  V  L  V  T  E  W  *  R  F  *  S  F  D  T  *  L  T  M  G  W  G  S  S  A  Y  R  L  L  M  D  H  V  T  K  *  H  L  Q  L  G  L  R  S  H  L  A  K  I  L  H  R  D  I  *  A  R  T  F  V  V  *  R  E  E  K  K  *  K  T  *  R  Y  K  S  W  I  M  I  P  F  S  H  S  C  S  C  T  F  C  *  Q  E  P  D  T  F  L  I  E  L  Y  I  E  I  D  S  E  R  I  E  I  M  R  K  C  A  C  N  A  M  L  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="421" stop="787"/>
                    <exon start="889" stop="938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKVLVKPDATQLTADSGIESAAPGLIIRKRKQVEKSDVTEVKHSQESTGADLQAEDAVALLLKHSQRYHSTDDEVESSGGDVSHESQTRKEKKKKQKKVLGPDRPSFLKSEKDYNSWVPPEGQSGDGRTSLNDRLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3486" PGL_stop="2120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3486" e_stop="3059"/>
            <exon e_start="2940" e_stop="2881"/>
            <exon e_start="2790" e_stop="2757"/>
            <exon e_start="2630" e_stop="2120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3486" e_stop="3059" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3058" i_stop="2941" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2940" e_stop="2881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2880" i_stop="2791" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2790" e_stop="2757" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2756" i_stop="2631" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2630" e_stop="2120" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3486" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3485" stop="3101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3287" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3151" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3151" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3147" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3147" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3147" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3146" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3146" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3145" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3144" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3139" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3139" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3139" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3137" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3135" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3131" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422693" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3126" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3122" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3115" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3115" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3112" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3100" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3087" stop="3059"/>
              <exon start="2940" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2919" stop="2881"/>
              <exon start="2790" stop="2757"/>
              <exon start="2630" stop="2251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2776" stop="2757"/>
              <exon start="2630" stop="2128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2531" stop="2128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2509" stop="2142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG : GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG : TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG : ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCAATCTC</gDNA_template>
            <first_frame> L  M  Y  T  F  *  I  M  L  C  M  A  F  E  L  N  Y  E  K  K  I  D  L  K  R  T  K  R  A  K  N  F  L  H  Y  A  K  L  K  *  N  A  P  V  N  S  L  V  Q  K  Y  *  C  S  *  *  I  L  D  Q  T  I  D  A  V  Y  R  F  I  Q  F  C  I  G  D  T  V  G  V  *  Q  Q  Q  V  L  G  *  R  D  *  P  L  E  K  I  P  L  Y  K  *  K  S  I  L  S  K  L  Y  T  L  H  F  L  S  *  L  H  T  K  L  L  Q  W  L  G  K  *  A  L  S  C  L  F  F  W  W  F  S  *  L  K  I  R :   F  Q  G  P  T  L  C  V  M  S  S  S  N  N  R  E  I  T  N  C :   M  V  L  V  R  E  D  S  I  L  K  :  I  V  N  Q  N  A  R  T  G  V  Q  R  H  R  I  R  S  R  V  C  F  S  A  R  N  A  V  Q  S  V  C  V  F  L  L  V  P  M  A  I  S  K  V  A  L  A  T  I  T  G  R  P  K  E  V  A  Q  S  A  H  D  H  P  Y  C  I  K  M  *  L  Q  T  P  N  F  C  Q  I  *  *  Y  *  L  I  N  Q  H  L  L  S  Q  V  V  Y  *  L  V  M  L  G  P  N  Y  I  E  E  D  W  A  S  Y  K  Y  N  S  M  V  M  I  M  Q  L  F  L  *  D  L  F  Y  I  I  I  M  I  I  S  *  V  I  F  I  G  V  P  *  E  L  *  N  V  Q  V  I  *  S  K  A  N  L  A  F  E  W  A  I  I  L  K  Q  S  </first_frame>
            <second_frame>  *  C  I  L  F  R  L  C  Y  V  W  L  L  N  *  T  M  R  K  K  L  T  *  N  E  Q  K  G  Q  K  T  S  Y  T  M  R  N  *  N  K  M  L  R  L  I  V  W  S  K  N  I  D  A  V  N  R  F  W  T  K  L  S  M  L  C  I  D  L  F  N  F  A  *  G  I  L  L  E  C  D  N  S  K  C  *  A  K  E  I  N  H  L  R  R  S  L  S  I  N  R  S  R  F  S  Q  S  S  T  H  F  T  S  S  L  S  F  T  Q  N  Y  Y  N  G  W  E  N  E  H  C  L  V  C  S  F  G  G  F  P  D  S  K  S   : G  F  K  G  Q  H  Y  A  *  *  A  A  A  T  T  E  K  *  P  T   : V  W  C  *  *  G  K  T  P  S  S  R :   L  S  T  K  M  H  V  P  V  F  K  D  I  V  *  E  A  V  Y  V  F  L  P  E  M  L  C  K  V  F  V  C  S  C  W  Y  L  W  Q  *  A  K  L  P  L  L  Q  *  L  E  D  Q  K  R  W  P  K  V  P  M  I  I  H  I  V  L  K  C  D  C  R  H  P  T  S  V  K  S  S  S  I  N  *  L  I  N  T  C  C  L  K  W  C  I  S  *  *  C  *  V  P  I  I  *  K  K  I  G  L  A  T  S  T  I  A  W  L  *  L  C  S  F  F  C  E  T  Y  F  I  L  L  L  *  L  Y  L  K  *  Y  L  L  V  Y  H  K  N  Y  R  M  F  K  S  S  N  P  R  P  T  W  R  L  N  G  L  L  Y  *  S  N  L </second_frame>
            <third_frame>   N  V  Y  F  L  D  Y  A  M  Y  G  F  *  T  E  L  *  E  K  N  *  L  E  T  N  K  K  G  K  K  L  L  T  L  C  E  I  E  I  K  C  S  G  *  *  F  G  P  K  I  L  M  Q  L  I  D  F  G  P  N  Y  R  C  C  V  *  I  Y  S  I  L  H  R  G  Y  C  W  S  V  T  T  A  S  A  R  L  K  R  L  T  T  *  E  D  P  S  L  *  I  E  V  D  S  L  K  A  L  H  T  S  L  P  L  L  A  S  H  K  I  T  T  M  A  G  K  M  S  I  V  L  F  V  L  L  V  V  F  L  T  Q  N  Q  :  V  S  R  A  N  I  M  R  D  E  Q  Q  Q  Q  Q  R  N  N  Q  L  :  Y  G  V  S  E  G  R  L  H  P  Q   : D  C  Q  P  K  C  T  Y  R  C  S  K  T  S  Y  K  K  P  C  M  F  F  C  Q  K  C  C  A  K  C  L  C  V  P  A  G  T  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  K  R  G  G  P  K  C  P  *  S  S  I  L  Y  *  N  V  T  A  D  T  Q  L  L  S  N  L  V  V  L  I  N  *  S  T  L  V  V  S  S  G  V  L  A  S  N  V  R  S  Q  L  Y  R  R  R  L  G  *  L  Q  V  Q  *  H  G  Y  D  Y  A  A  F  F  V  R  L  I  L  Y  Y  Y  Y  D  Y  I  L  S  D  I  Y  W  C  T  I  R  I  I  E  C  S  S  H  L  I  Q  G  Q  L  G  V  *  M  G  Y  Y  T  K  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3190" stop="3059"/>
                    <exon start="2940" stop="2881"/>
                    <exon start="2790" stop="2757"/>
                    <exon start="2630" stop="2449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVDSLKALHTSLPLLASHKITTMAGKMSIVLFVLLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="3101" PGL_stop="3485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3101" e_stop="3485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3101" e_stop="3485" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3101" stop="3485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</gDNA_template>
            <first_frame> N  A  H  F  P  S  H  C  S  N  F  V  *  S  *  E  R  K  *  S  V  *  S  F  E  R  I  D  F  Y  L  *  R  G  I  F  S  S  G  *  S  L  *  P  S  T  C  C  C  H  T  P  T  V  S  P  M  Q  N  *  I  N  L  Y  T  A  S  I  V  W  S  K  I  Y  *  L  H  Q  Y  F  W  T  K  L  L  T  G  A  F  Y  F  N  F  A  *  C  K  K  F  F  A  L  F  V  R  F  K  S  I  F  F  S  *  F  S  S  K  A  I  H  S  I  I  *  K  V  Y  I  </first_frame>
            <second_frame>  M  L  I  F  P  A  I  V  V  I  L  C  E  A  K  R  G  S  E  V  C  R  A  L  R  E  S  T  S  I  Y  R  E  G  S  S  Q  V  V  N  L  F  S  L  A  L  A  V  V  T  L  Q  Q  Y  P  L  C  K  I  E  *  I  Y  T  Q  H  R  *  F  G  P  K  S  I  N  C  I  N  I  F  G  P  N  Y  *  P  E  H  F  I  S  I  S  H  S  V  R  S  F  L  P  F  L  F  V  S  S  Q  F  F  S  H  S  S  V  Q  K  P  Y  I  A  *  S  K  K  Y  T  L </second_frame>
            <third_frame>   C  S  F  S  Q  P  L  *  *  F  C  V  K  L  R  E  E  V  K  C  V  E  L  *  E  N  R  L  L  F  I  E  R  D  L  L  K  W  L  I  S  L  A  *  H  L  L  L  S  H  S  N  S  I  P  Y  A  K  L  N  K  S  I  H  S  I  D  S  L  V  Q  N  L  L  T  A  S  I  F  L  D  Q  T  I  N  R  S  I  L  F  Q  F  R  I  V  *  E  V  F  C  P  F  C  S  F  Q  V  N  F  F  L  I  V  Q  F  K  S  H  T  *  H  N  L  K  S  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23738" PGL_stop="18189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23738" e_stop="23216"/>
            <exon e_start="21959" e_stop="21923"/>
            <exon e_start="21835" e_stop="21599"/>
            <exon e_start="21513" e_stop="21466"/>
            <exon e_start="20505" e_stop="20069"/>
            <exon e_start="19935" e_stop="19850"/>
            <exon e_start="18870" e_stop="18189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="0.975"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="0.969"/>
          <exon-intron don_prob="0.910" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23738" e_stop="23216" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="23215" i_stop="21960" i_length="1256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21959" e_stop="21923" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.962">
            <gDNA_intron_boundary i_start="21922" i_stop="21836" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="21835" e_stop="21599" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21598" i_stop="21514" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21513" e_stop="21466" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21465" i_stop="20506" i_length="960"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="20505" e_stop="20069" e_length="437"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="20068" i_stop="19936" i_length="133"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19935" e_stop="19850" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.906">
            <gDNA_intron_boundary i_start="19849" i_stop="18871" i_length="979"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18870" e_stop="18189" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23738" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23738" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23708" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23702" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23323" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21599"/>
              <exon start="21513" stop="21466"/>
              <exon start="20505" stop="20246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23323" stop="23216"/>
              <exon start="21959" stop="21923"/>
              <exon start="21835" stop="21599"/>
              <exon start="21513" stop="21466"/>
              <exon start="20505" stop="20335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20272" stop="20069"/>
              <exon start="19935" stop="19850"/>
              <exon start="18870" stop="18689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20271" stop="20069"/>
              <exon start="19935" stop="19850"/>
              <exon start="18870" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18835" stop="18510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18826" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCCTTTTCCTTTTTCTCTCTTCAAACCAAATCTCTACATTTAGCCGTAGAAATATACGTATAATTAATATATTGATTGCCATTTTTCGCCATCAACGGATTCGATTCGGAACCCTAGCTAGATTTTGGGATCCTACACTTATACATAGAGAGATATAGTCTACTGTTACTTGTACTCTGTGTGTAAATAATTCATTTCTAGATTTTGGTTCGGAAGCCATGGGAGCGGTGACATCGTCCATGGCAGCAAAGTTTGCGTTTTTTCCGCCGAATCCGCCGTCGTATGGAGTGGTGGTGGAAGAATCGACGGGGAAATTGAAGTTGACTGAAGTGGCGGCGAAGGAAAACGTTGACGTATTGAAGCTACCGACGAAGAAGGGAACGGAGATTGTCGCGGTGTATATTAGGAATCCGGCGGCGACGCTGACGGTGCTTTACTCGCATGGCAACGCGGCTGATCTAGGTCAGATGTACGAGTTGTTTGTCGAACTAAGTCACCTTCTCCGGGTCAATTTGATGGG : ATATGACTATTCAGGGTATGGGCGGTCCACCGGCAAG : CCTAGTGAGCAGAATACTTACGCCGACATAGAAGCTGCATATAGATGTCTTGAAGAGACATATGGGGTGAAAGAGGAAGATGTCATACTATATGGACAGTCGGTTGGTAGTGGACCCACACTGGATCTGGCGTCGCGGTTGTCAAGATTGAGGGCAGTGGTTCTTCACAGCCCAATACTCTCCGGACTTCGTGTAATGTATGCAGTGAAGCGGACATATTGGTTTGACATATATAAG : AATATTGACAAAATACCATTGGTTGAATGTCCTGTCCTCATTATTCAC : GGCACTGCAGATGATGTAGTTGATTGCTCCCATGGCAAACAACTTTTTGAGCTATCTAAGCAGAAATATGAGCCTTTGTGGGTTAAAACTGGTAACCATTGTGATTTGGAGCTCTTCCCAGAGTACATAATACATCTGAAGAAGTTCATATCAGCTATTGAGAAATCAACTAGTTTTAGAAATGTATCTGCTCTTAGCATAAACCAAATAGATAAACCTCGAAGCAGTACAGATTGTAGACCCCGGTCGAGCACAGATCAGAGGGAGAAATCTAGGCTAAGCACAGAGAAGAGAGAGCCTAGAATAAGCACAGATCAAAGAGAAAAATCCAGAGCTAGCATAGACCGCAAGGAGAAGTCGAGCAAGAGTGTGGATCTCTCAGATAAGGCAAATGATAATACAGAACAACAAGAGAAAGCTAGAAAAAGCATTGATCG : CTTTGGCAACATGATGAGATCTGCCGTATTGTGCAATATTGATTGCTTCAAGCCAGTGGGAGCAAATGTCTGAATGTCTGATGAAG : ATAGCAGTTTTCCAAGAATGTACGTGCTCCGGAGCTCAACTAAACATCCCAATGCAAACACTGTTTGTAGATACCACGGCGAACCAAAATGGTCTTAGCATGATAGTTATCACACGGGATCCTACAATTTGGATGAATTGGGTTAGTAACAAGGAAAAAGTGGCGGGGTTTCTCTCGTTGGGTTATGTGATTATATGACCCATTACAAAATGTTCTTTTAAAAGTTTTATGGCCCATTTGACAGGAGATCTATTTATTATTTTAACACATAGGAGATACAGTGCTATAAAGTACAATAGATCTTTGTGGTCGTTCTTTTTAATTCAAATTGTAACTGGCAATTTATATCATTTCCTCTCCCGTGCCTGTACCAAATTGCAAATGTTATGCTTCAATACCCTGAAGTTGTGTTGCCTGTACTACCGGAAGGGAACCGAATCTTCTATTGTGGCTTCATGAGGCATCTAATCCTGATGAAACCACCCAGGTTTGAGTTTGGTTTTGGAGTAATCATAGTTGTCATCTTCCCTCCTTCGACACTCTTTATCATATCGATCTTTCTCCTTTATTATGATTCTACACACTTCGGTGGACTAGACTAGTTCACAAAATATTTACAAAGTGTATGTTGTTGTGGTATGGAGTACCATAAACCAACCAATGAAAAGAACTACTCAAGATT</gDNA_template>
            <first_frame> S  S  F  S  F  F  S  L  Q  T  K  S  L  H  L  A  V  E  I  Y  V  *  L  I  Y  *  L  P  F  F  A  I  N  G  F  D  S  E  P  *  L  D  F  G  I  L  H  L  Y  I  E  R  Y  S  L  L  L  L  V  L  C  V  *  I  I  H  F  *  I  L  V  R  K  P  W  E  R  *  H  R  P  W  Q  Q  S  L  R  F  F  R  R  I  R  R  R  M  E  W  W  W  K  N  R  R  G  N  *  S  *  L  K  W  R  R  R  K  T  L  T  Y  *  S  Y  R  R  R  R  E  R  R  L  S  R  C  I  L  G  I  R  R  R  R  *  R  C  F  T  R  M  A  T  R  L  I  *  V  R  C  T  S  C  L  S  N  *  V  T  F  S  G  S  I  *  W   : D  M  T  I  Q  G  M  G  G  P  P  A  S :   L  V  S  R  I  L  T  P  T  *  K  L  H  I  D  V  L  K  R  H  M  G  *  K  R  K  M  S  Y  Y  M  D  S  R  L  V  V  D  P  H  W  I  W  R  R  G  C  Q  D  *  G  Q  W  F  F  T  A  Q  Y  S  P  D  F  V  *  C  M  Q  *  S  G  H  I  G  L  T  Y  I  R :   I  L  T  K  Y  H  W  L  N  V  L  S  S  L  F  T :   A  L  Q  M  M  *  L  I  A  P  M  A  N  N  F  L  S  Y  L  S  R  N  M  S  L  C  G  L  K  L  V  T  I  V  I  W  S  S  S  Q  S  T  *  Y  I  *  R  S  S  Y  Q  L  L  R  N  Q  L  V  L  E  M  Y  L  L  L  A  *  T  K  *  I  N  L  E  A  V  Q  I  V  D  P  G  R  A  Q  I  R  G  R  N  L  G  *  A  Q  R  R  E  S  L  E  *  A  Q  I  K  E  K  N  P  E  L  A  *  T  A  R  R  S  R  A  R  V  W  I  S  Q  I  R  Q  M  I  I  Q  N  N  K  R  K  L  E  K  A  L  I   : A  L  A  T  *  *  D  L  P  Y  C  A  I  L  I  A  S  S  Q  W  E  Q  M  S  E  C  L  M  K  :  I  A  V  F  Q  E  C  T  C  S  G  A  Q  L  N  I  P  M  Q  T  L  F  V  D  T  T  A  N  Q  N  G  L  S  M  I  V  I  T  R  D  P  T  I  W  M  N  W  V  S  N  K  E  K  V  A  G  F  L  S  L  G  Y  V  I  I  *  P  I  T  K  C  S  F  K  S  F  M  A  H  L  T  G  D  L  F  I  I  L  T  H  R  R  Y  S  A  I  K  Y  N  R  S  L  W  S  F  F  L  I  Q  I  V  T  G  N  L  Y  H  F  L  S  R  A  C  T  K  L  Q  M  L  C  F  N  T  L  K  L  C  C  L  Y  Y  R  K  G  T  E  S  S  I  V  A  S  *  G  I  *  S  *  *  N  H  P  G  L  S  L  V  L  E  *  S  *  L  S  S  S  L  L  R  H  S  L  S  Y  R  S  F  S  F  I  M  I  L  H  T  S  V  D  *  T  S  S  Q  N  I  Y  K  V  Y  V  V  V  V  W  S  T  I  N  Q  P  M  K  R  T  T  Q  D  </first_frame>
            <second_frame>  L  P  F  P  F  S  L  F  K  P  N  L  Y  I  *  P  *  K  Y  T  Y  N  *  Y  I  D  C  H  F  S  P  S  T  D  S  I  R  N  P  S  *  I  L  G  S  Y  T  Y  T  *  R  D  I  V  Y  C  Y  L  Y  S  V  C  K  *  F  I  S  R  F  W  F  G  S  H  G  S  G  D  I  V  H  G  S  K  V  C  V  F  S  A  E  S  A  V  V  W  S  G  G  G  R  I  D  G  E  I  E  V  D  *  S  G  G  E  G  K  R  *  R  I  E  A  T  D  E  E  G  N  G  D  C  R  G  V  Y  *  E  S  G  G  D  A  D  G  A  L  L  A  W  Q  R  G  *  S  R  S  D  V  R  V  V  C  R  T  K  S  P  S  P  G  Q  F  D  G  :  I  *  L  F  R  V  W  A  V  H  R  Q   : A  *  *  A  E  Y  L  R  R  H  R  S  C  I  *  M  S  *  R  D  I  W  G  E  R  G  R  C  H  T  I  W  T  V  G  W  *  W  T  H  T  G  S  G  V  A  V  V  K  I  E  G  S  G  S  S  Q  P  N  T  L  R  T  S  C  N  V  C  S  E  A  D  I  L  V  *  H  I  *   : E  Y  *  Q  N  T  I  G  *  M  S  C  P  H  Y  S   : R  H  C  R  *  C  S  *  L  L  P  W  Q  T  T  F  *  A  I  *  A  E  I  *  A  F  V  G  *  N  W  *  P  L  *  F  G  A  L  P  R  V  H  N  T  S  E  E  V  H  I  S  Y  *  E  I  N  *  F  *  K  C  I  C  S  *  H  K  P  N  R  *  T  S  K  Q  Y  R  L  *  T  P  V  E  H  R  S  E  G  E  I  *  A  K  H  R  E  E  R  A  *  N  K  H  R  S  K  R  K  I  Q  S  *  H  R  P  Q  G  E  V  E  Q  E  C  G  S  L  R  *  G  K  *  *  Y  R  T  T  R  E  S  *  K  K  H  *  S  :  L  W  Q  H  D  E  I  C  R  I  V  Q  Y  *  L  L  Q  A  S  G  S  K  C  L  N  V  *  *  R :   *  Q  F  S  K  N  V  R  A  P  E  L  N  *  T  S  Q  C  K  H  C  L  *  I  P  R  R  T  K  M  V  L  A  *  *  L  S  H  G  I  L  Q  F  G  *  I  G  L  V  T  R  K  K  W  R  G  F  S  R  W  V  M  *  L  Y  D  P  L  Q  N  V  L  L  K  V  L  W  P  I  *  Q  E  I  Y  L  L  F  *  H  I  G  D  T  V  L  *  S  T  I  D  L  C  G  R  S  F  *  F  K  L  *  L  A  I  Y  I  I  S  S  P  V  P  V  P  N  C  K  C  Y  A  S  I  P  *  S  C  V  A  C  T  T  G  R  E  P  N  L  L  L  W  L  H  E  A  S  N  P  D  E  T  T  Q  V  *  V  W  F  W  S  N  H  S  C  H  L  P  S  F  D  T  L  Y  H  I  D  L  S  P  L  L  *  F  Y  T  L  R  W  T  R  L  V  H  K  I  F  T  K  C  M  L  L  W  Y  G  V  P  *  T  N  Q  *  K  E  L  L  K  I </second_frame>
            <third_frame>   F  L  F  L  F  L  S  S  N  Q  I  S  T  F  S  R  R  N  I  R  I  I  N  I  L  I  A  I  F  R  H  Q  R  I  R  F  G  T  L  A  R  F  W  D  P  T  L  I  H  R  E  I  *  S  T  V  T  C  T  L  C  V  N  N  S  F  L  D  F  G  S  E  A  M  G  A  V  T  S  S  M  A  A  K  F  A  F  F  P  P  N  P  P  S  Y  G  V  V  V  E  E  S  T  G  K  L  K  L  T  E  V  A  A  K  E  N  V  D  V  L  K  L  P  T  K  K  G  T  E  I  V  A  V  Y  I  R  N  P  A  A  T  L  T  V  L  Y  S  H  G  N  A  A  D  L  G  Q  M  Y  E  L  F  V  E  L  S  H  L  L  R  V  N  L  M  G :   Y  D  Y  S  G  Y  G  R  S  T  G  K  :  P  S  E  Q  N  T  Y  A  D  I  E  A  A  Y  R  C  L  E  E  T  Y  G  V  K  E  E  D  V  I  L  Y  G  Q  S  V  G  S  G  P  T  L  D  L  A  S  R  L  S  R  L  R  A  V  V  L  H  S  P  I  L  S  G  L  R  V  M  Y  A  V  K  R  T  Y  W  F  D  I  Y  K  :  N  I  D  K  I  P  L  V  E  C  P  V  L  I  I  H  :  G  T  A  D  D  V  V  D  C  S  H  G  K  Q  L  F  E  L  S  K  Q  K  Y  E  P  L  W  V  K  T  G  N  H  C  D  L  E  L  F  P  E  Y  I  I  H  L  K  K  F  I  S  A  I  E  K  S  T  S  F  R  N  V  S  A  L  S  I  N  Q  I  D  K  P  R  S  S  T  D  C  R  P  R  S  S  T  D  Q  R  E  K  S  R  L  S  T  E  K  R  E  P  R  I  S  T  D  Q  R  E  K  S  R  A  S  I  D  R  K  E  K  S  S  K  S  V  D  L  S  D  K  A  N  D  N  T  E  Q  Q  E  K  A  R  K  S  I  D  R :   F  G  N  M  M  R  S  A  V  L  C  N  I  D  C  F  K  P  V  G  A  N  V  *  M  S  D  E   : D  S  S  F  P  R  M  Y  V  L  R  S  S  T  K  H  P  N  A  N  T  V  C  R  Y  H  G  E  P  K  W  S  *  H  D  S  Y  H  T  G  S  Y  N  L  D  E  L  G  *  *  Q  G  K  S  G  G  V  S  L  V  G  L  C  D  Y  M  T  H  Y  K  M  F  F  *  K  F  Y  G  P  F  D  R  R  S  I  Y  Y  F  N  T  *  E  I  Q  C  Y  K  V  Q  *  I  F  V  V  V  L  F  N  S  N  C  N  W  Q  F  I  S  F  P  L  P  C  L  Y  Q  I  A  N  V  M  L  Q  Y  P  E  V  V  L  P  V  L  P  E  G  N  R  I  F  Y  C  G  F  M  R  H  L  I  L  M  K  P  P  R  F  E  F  G  F  G  V  I  I  V  V  I  F  P  P  S  T  L  F  I  I  S  I  F  L  L  Y  Y  D  S  T  H  F  G  G  L  D  *  F  T  K  Y  L  Q  S  V  C  C  C  G  M  E  Y  H  K  P  T  N  E  K  N  Y  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23577" stop="23216"/>
                    <exon start="21959" stop="21923"/>
                    <exon start="21835" stop="21599"/>
                    <exon start="21513" stop="21466"/>
                    <exon start="20505" stop="20069"/>
                    <exon start="19935" stop="19863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STVTCTLCVNNSFLDFGSEAMGAVTSSMAAKFAFFPPNPPSYGVVVEESTGKLKLTEVAAKENVDVLKLPTKKGTEIVAVYIRNPAATLTVLYSHGNAADLGQMYELFVELSHLLRVNLMGYDYSGYGRSTGKPSEQNTYADIEAAYRCLEETYGVKEEDVILYGQSVGSGPTLDLASRLSRLRAVVLHSPILSGLRVMYAVKRTYWFDIYKNIDKIPLVECPVLIIHGTADDVVDCSHGKQLFELSKQKYEPLWVKTGNHCDLELFPEYIIHLKKFISAIEKSTSFRNVSALSINQIDKPRSSTDCRPRSSTDQREKSRLSTEKREPRISTDQREKSRASIDRKEKSSKSVDLSDKANDNTEQQEKARKSIDRFGNMMRSAVLCNIDCFKPVGANV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18571" stop="18269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVVVLFNSNCNWQFISFPLPCLYQIANVMLQYPEVVLPVLPEGNRIFYCGFMRHLILMKPPRFEFGFGVIIVVIFPPSTLFIISIFLLYYDSTHFGGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29021" PGL_stop="29590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29021" e_stop="29590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="29021" e_stop="29590" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29021" stop="29590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAATTAGCAAAAACTCTTTTTCAAAAATCATGTAATTTTCATAATTTTTTTTTATATATTTCTGAAAATTATTACTACTACCTACTCTGTAGTTCAGTAGTGGAAAAAAAAAAACATGGTAACGCAATTCACGAAAGAGGCAAGAACGGAGAGATGATAACATACAGGATTTGGTTTTGACGGATAGCGATATGCGCTGTAATTTATACATTGAGGTAACCTTTTTCTACAACTTTTTATCATTTTTAGCCTCTAATCAGTAGTCCCTCCAACAAGATTCGATTTTGTTCGAATCGGATCTGTGAAACCCAGTTGGAAAAAGATTCGATCCATACCTCAGATGATCCTTTTTGTTGTTGGTGTTTTCATCAATCAAAATTGAGCATTTCTAAGTTCTATGAAGAACTGTTTACATTGTAAATTTAACCTAATTGGAGTTTTGCCTTGATTGAAGTTAGTTTGGGTTTGGTCTGGTGTGTGCAGCTCAATTAGAATTGGGGTTTTGGGGGATTAATTGTACCCACATTCAGAGGTTCTAGCTAAGTGGGGATTTCTGGGATTTGATTC</gDNA_template>
            <first_frame> S  K  L  A  K  T  L  F  Q  K  S  C  N  F  H  N  F  F  L  Y  I  S  E  N  Y  Y  Y  Y  L  L  C  S  S  V  V  E  K  K  K  H  G  N  A  I  H  E  R  G  K  N  G  E  M  I  T  Y  R  I  W  F  *  R  I  A  I  C  A  V  I  Y  T  L  R  *  P  F  S  T  T  F  Y  H  F  *  P  L  I  S  S  P  S  N  K  I  R  F  C  S  N  R  I  C  E  T  Q  L  E  K  D  S  I  H  T  S  D  D  P  F  C  C  W  C  F  H  Q  S  K  L  S  I  S  K  F  Y  E  E  L  F  T  L  *  I  *  P  N  W  S  F  A  L  I  E  V  S  L  G  L  V  W  C  V  Q  L  N  *  N  W  G  F  G  G  L  I  V  P  T  F  R  G  S  S  *  V  G  I  S  G  I  *  F </first_frame>
            <second_frame>  Q  N  *  Q  K  L  F  F  K  N  H  V  I  F  I  I  F  F  Y  I  F  L  K  I  I  T  T  T  Y  S  V  V  Q  *  W  K  K  K  N  M  V  T  Q  F  T  K  E  A  R  T  E  R  *  *  H  T  G  F  G  F  D  G  *  R  Y  A  L  *  F  I  H  *  G  N  L  F  L  Q  L  F  I  I  F  S  L  *  S  V  V  P  P  T  R  F  D  F  V  R  I  G  S  V  K  P  S  W  K  K  I  R  S  I  P  Q  M  I  L  F  V  V  G  V  F  I  N  Q  N  *  A  F  L  S  S  M  K  N  C  L  H  C  K  F  N  L  I  G  V  L  P  *  L  K  L  V  W  V  W  S  G  V  C  S  S  I  R  I  G  V  L  G  D  *  L  Y  P  H  S  E  V  L  A  K  W  G  F  L  G  F  D   </second_frame>
            <third_frame>   K  I  S  K  N  S  F  S  K  I  M  *  F  S  *  F  F  F  I  Y  F  *  K  L  L  L  L  P  T  L  *  F  S  S  G  K  K  K  T  W  *  R  N  S  R  K  R  Q  E  R  R  D  D  N  I  Q  D  L  V  L  T  D  S  D  M  R  C  N  L  Y  I  E  V  T  F  F  Y  N  F  L  S  F  L  A  S  N  Q  *  S  L  Q  Q  D  S  I  L  F  E  S  D  L  *  N  P  V  G  K  R  F  D  P  Y  L  R  *  S  F  L  L  L  V  F  S  S  I  K  I  E  H  F  *  V  L  *  R  T  V  Y  I  V  N  L  T  *  L  E  F  C  L  D  *  S  *  F  G  F  G  L  V  C  A  A  Q  L  E  L  G  F  W  G  I  N  C  T  H  I  Q  R  F  *  L  S  G  D  F  W  D  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30273" PGL_stop="30846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30273" e_stop="30846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30273" e_stop="30846" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30273" stop="30846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30273" stop="30809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTGCTTATGGTTGTTGATAGAAAGGATAGGTCATTTAAAGTTATTGCCACCAGCGATATTTATGGTGACAGGTCTTTGCCAACGGAGGTATATGATTCAAAGATCGACAAATGGTCGCTTCACCAGACAATGCCTGCTGTAAACCTTTGTTCCTCCAAGATGGCATTTTGTGATTCAAGACTGTATTTGGAAACTCTCTCCCCACTTGGTTTGATGATGTATCGGCTGGATACAGGGCAGTGGGAACACATCCCTGCTAAGTTTCCACGCTCATTGTTGGATGGGTACCTAGTTGCTGGAACTCACAAACGCCTATTTTTGGTTGGAAGGATAGGGCTCTATAGTACTCTTCAAAGTATGAGGATATGGGAACTAGATCACTCAAAAGTCGTCTGGGTTGAAATAAGCAGGATGCCTCCAAGATATTTTCGTGCACTTTTAAGACTATCTGCTGAAAGATTTGAATGCTTTGGACAGGATAACCTAATATGCTTCACGTCTTGGAACCAAGGAAAAGGCCTTCTTTATGATGTCGATAAGAAGGTGTGGTCTTGGATTGCCGGGTGTGCTC</gDNA_template>
            <first_frame> Q  L  L  M  V  V  D  R  K  D  R  S  F  K  V  I  A  T  S  D  I  Y  G  D  R  S  L  P  T  E  V  Y  D  S  K  I  D  K  W  S  L  H  Q  T  M  P  A  V  N  L  C  S  S  K  M  A  F  C  D  S  R  L  Y  L  E  T  L  S  P  L  G  L  M  M  Y  R  L  D  T  G  Q  W  E  H  I  P  A  K  F  P  R  S  L  L  D  G  Y  L  V  A  G  T  H  K  R  L  F  L  V  G  R  I  G  L  Y  S  T  L  Q  S  M  R  I  W  E  L  D  H  S  K  V  V  W  V  E  I  S  R  M  P  P  R  Y  F  R  A  L  L  R  L  S  A  E  R  F  E  C  F  G  Q  D  N  L  I  C  F  T  S  W  N  Q  G  K  G  L  L  Y  D  V  D  K  K  V  W  S  W  I  A  G  C  A  </first_frame>
            <second_frame>  S  C  L  W  L  L  I  E  R  I  G  H  L  K  L  L  P  P  A  I  F  M  V  T  G  L  C  Q  R  R  Y  M  I  Q  R  S  T  N  G  R  F  T  R  Q  C  L  L  *  T  F  V  P  P  R  W  H  F  V  I  Q  D  C  I  W  K  L  S  P  H  L  V  *  *  C  I  G  W  I  Q  G  S  G  N  T  S  L  L  S  F  H  A  H  C  W  M  G  T  *  L  L  E  L  T  N  A  Y  F  W  L  E  G  *  G  S  I  V  L  F  K  V  *  G  Y  G  N  *  I  T  Q  K  S  S  G  L  K  *  A  G  C  L  Q  D  I  F  V  H  F  *  D  Y  L  L  K  D  L  N  A  L  D  R  I  T  *  Y  A  S  R  L  G  T  K  E  K  A  F  F  M  M  S  I  R  R  C  G  L  G  L  P  G  V  L </second_frame>
            <third_frame>   V  A  Y  G  C  *  *  K  G  *  V  I  *  S  Y  C  H  Q  R  Y  L  W  *  Q  V  F  A  N  G  G  I  *  F  K  D  R  Q  M  V  A  S  P  D  N  A  C  C  K  P  L  F  L  Q  D  G  I  L  *  F  K  T  V  F  G  N  S  L  P  T  W  F  D  D  V  S  A  G  Y  R  A  V  G  T  H  P  C  *  V  S  T  L  I  V  G  W  V  P  S  C  W  N  S  Q  T  P  I  F  G  W  K  D  R  A  L  *  Y  S  S  K  Y  E  D  M  G  T  R  S  L  K  S  R  L  G  *  N  K  Q  D  A  S  K  I  F  S  C  T  F  K  T  I  C  *  K  I  *  M  L  W  T  G  *  P  N  M  L  H  V  L  E  P  R  K  R  P  S  L  *  C  R  *  E  G  V  V  L  D  C  R  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30273" stop="30845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLMVVDRKDRSFKVIATSDIYGDRSLPTEVYDSKIDKWSLHQTMPAVNLCSSKMAFCDSRLYLETLSPLGLMMYRLDTGQWEHIPAKFPRSLLDGYLVAGTHKRLFLVGRIGLYSTLQSMRIWELDHSKVVWVEISRMPPRYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYDVDKKVWSWIAGCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="44987" PGL_stop="46180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44987" e_stop="45069"/>
            <exon e_start="45152" e_stop="45223"/>
            <exon e_start="45339" e_stop="45542"/>
            <exon e_start="45632" e_stop="46180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.585" acc_prob="0.965" e_score="0.940"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.847" acc_prob="0.997" e_score="0.980"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="44987" e_stop="45069" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.585" acc_prob="0.965">
            <gDNA_intron_boundary i_start="45070" i_stop="45151" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45152" e_stop="45223" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45224" i_stop="45338" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="45339" e_stop="45542" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.847" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45543" i_stop="45631" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.954">
            <gDNA_exon_boundary e_start="45632" e_stop="46180" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44987" stop="45069"/>
              <exon start="45152" stop="45223"/>
              <exon start="45339" stop="45542"/>
              <exon start="45632" stop="45813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44987" stop="45069"/>
              <exon start="45152" stop="45223"/>
              <exon start="45339" stop="45493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45221" stop="45223"/>
              <exon start="45339" stop="45542"/>
              <exon start="45632" stop="46180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422616" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAGGAATACAGCCTGAGTTGGGAAGATCGGGTGCAAATAGCCCTTGATATTTCACATGGCATTGAGTATCTTCACGATGGG : GCAGTTCCCCCAGTGATACACCGTGATTTGAAGACTGCCAATATATTGCTAGATCAATCTATGAGAGCTAAG : GTTGCTGATTTTGGGCTGTCAAAAGAGGAGGTATATGATGGCCGCAATTCAGGCCTTAAAGGTACATATGGCTACATAGATCCTATGTATATATCCACAAGCAAGTTCACAACGAAGAGTGACATATATAGCTTTGGCATTATCCTTTTTGAACTAATCACCGCTATTCATCCACATCAGAACTTAATGGAATATGTAAATCTT : GCGGCAATGAGTTCTGATGGAGTTGATGAGATCCTAGACAAGAAGCTTGTTGGAACATGCAGTGTAGAACAAGTGAGGAGTCTTGCTGCAATTGCTCATAAATGCATACACAGAACACCTAGGAAGCGTCCTTCCATGGGCGAAATATCACATGCAATATTGAAAATAAAACAGAGGCGCCTTGTCAAAGAGGATACCATGTCATTTACAAGATATGACAGTTCAAGAATGGCTAGAAGGATAGAACATCAACAGGTTGAATTGAGAAACATGGCCAGCATTAATGAAAGAGAAGTTGAATGACTTTTCATTCACAACCATGAACACTTTGTTTCAATTCTTGAGCTTATTTTTTGCAGCATAAAAGATATAGGAAAGACATCACGCTGAGTGTTGGATCAACAACTTGGCATGAAATTGGTGTTTTTGGATATGATTTAAGTTATATAAACTAACCATGTAAAGAATTTTTATATCGGAAAATTTAAGTTGACAAGATTTTAACATGTATCCTTTCTTTCCACCTCTTACTAATTCACGCTTATTAAT</gDNA_template>
            <first_frame> V  R  N  T  A  *  V  G  K  I  G  C  K  *  P  L  I  F  H  M  A  L  S  I  F  T  M  G :   Q  F  P  Q  *  Y  T  V  I  *  R  L  P  I  Y  C  *  I  N  L  *  E  L  R :   L  L  I  L  G  C  Q  K  R  R  Y  M  M  A  A  I  Q  A  L  K  V  H  M  A  T  *  I  L  C  I  Y  P  Q  A  S  S  Q  R  R  V  T  Y  I  A  L  A  L  S  F  L  N  *  S  P  L  F  I  H  I  R  T  *  W  N  M  *  I  L :   R  Q  *  V  L  M  E  L  M  R  S  *  T  R  S  L  L  E  H  A  V  *  N  K  *  G  V  L  L  Q  L  L  I  N  A  Y  T  E  H  L  G  S  V  L  P  W  A  K  Y  H  M  Q  Y  *  K  *  N  R  G  A  L  S  K  R  I  P  C  H  L  Q  D  M  T  V  Q  E  W  L  E  G  *  N  I  N  R  L  N  *  E  T  W  P  A  L  M  K  E  K  L  N  D  F  S  F  T  T  M  N  T  L  F  Q  F  L  S  L  F  F  A  A  *  K  I  *  E  R  H  H  A  E  C  W  I  N  N  L  A  *  N  W  C  F  W  I  *  F  K  L  Y  K  L  T  M  *  R  I  F  I  S  E  N  L  S  *  Q  D  F  N  M  Y  P  F  F  P  P  L  T  N  S  R  L  L   </first_frame>
            <second_frame>  *  G  I  Q  P  E  L  G  R  S  G  A  N  S  P  *  Y  F  T  W  H  *  V  S  S  R  W   : G  S  S  P  S  D  T  P  *  F  E  D  C  Q  Y  I  A  R  S  I  Y  E  S  *   : G  C  *  F  W  A  V  K  R  G  G  I  *  W  P  Q  F  R  P  *  R  Y  I  W  L  H  R  S  Y  V  Y  I  H  K  Q  V  H  N  E  E  *  H  I  *  L  W  H  Y  P  F  *  T  N  H  R  Y  S  S  T  S  E  L  N  G  I  C  K  S   : C  G  N  E  F  *  W  S  *  *  D  P  R  Q  E  A  C  W  N  M  Q  C  R  T  S  E  E  S  C  C  N  C  S  *  M  H  T  Q  N  T  *  E  A  S  F  H  G  R  N  I  T  C  N  I  E  N  K  T  E  A  P  C  Q  R  G  Y  H  V  I  Y  K  I  *  Q  F  K  N  G  *  K  D  R  T  S  T  G  *  I  E  K  H  G  Q  H  *  *  K  R  S  *  M  T  F  H  S  Q  P  *  T  L  C  F  N  S  *  A  Y  F  L  Q  H  K  R  Y  R  K  D  I  T  L  S  V  G  S  T  T  W  H  E  I  G  V  F  G  Y  D  L  S  Y  I  N  *  P  C  K  E  F  L  Y  R  K  I  *  V  D  K  I  L  T  C  I  L  S  F  H  L  L  L  I  H  A  Y  *  </second_frame>
            <third_frame>   E  E  Y  S  L  S  W  E  D  R  V  Q  I  A  L  D  I  S  H  G  I  E  Y  L  H  D  G  :  A  V  P  P  V  I  H  R  D  L  K  T  A  N  I  L  L  D  Q  S  M  R  A  K  :  V  A  D  F  G  L  S  K  E  E  V  Y  D  G  R  N  S  G  L  K  G  T  Y  G  Y  I  D  P  M  Y  I  S  T  S  K  F  T  T  K  S  D  I  Y  S  F  G  I  I  L  F  E  L  I  T  A  I  H  P  H  Q  N  L  M  E  Y  V  N  L  :  A  A  M  S  S  D  G  V  D  E  I  L  D  K  K  L  V  G  T  C  S  V  E  Q  V  R  S  L  A  A  I  A  H  K  C  I  H  R  T  P  R  K  R  P  S  M  G  E  I  S  H  A  I  L  K  I  K  Q  R  R  L  V  K  E  D  T  M  S  F  T  R  Y  D  S  S  R  M  A  R  R  I  E  H  Q  Q  V  E  L  R  N  M  A  S  I  N  E  R  E  V  E  *  L  F  I  H  N  H  E  H  F  V  S  I  L  E  L  I  F  C  S  I  K  D  I  G  K  T  S  R  *  V  L  D  Q  Q  L  G  M  K  L  V  F  L  D  M  I  *  V  I  *  T  N  H  V  K  N  F  Y  I  G  K  F  K  L  T  R  F  *  H  V  S  F  L  S  T  S  Y  *  F  T  L  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44989" stop="45069"/>
                    <exon start="45152" stop="45223"/>
                    <exon start="45339" stop="45542"/>
                    <exon start="45632" stop="45934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEYSLSWEDRVQIALDISHGIEYLHDGAVPPVIHRDLKTANILLDQSMRAKVADFGLSKEEVYDGRNSGLKGTYGYIDPMYISTSKFTTKSDIYSFGIILFELITAIHPHQNLMEYVNLAAMSSDGVDEILDKKLVGTCSVEQVRSLAAIAHKCIHRTPRKRPSMGEISHAILKIKQRRLVKEDTMSFTRYDSSRMARRIEHQQVELRNMASINEREVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46812" PGL_stop="49171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46812" e_stop="47040"/>
            <exon e_start="47134" e_stop="47241"/>
            <exon e_start="48239" e_stop="48313"/>
            <exon e_start="48743" e_stop="49171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46812" e_stop="47040" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47041" i_stop="47133" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47134" e_stop="47241" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.969">
            <gDNA_intron_boundary i_start="47242" i_stop="48238" i_length="997"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48239" e_stop="48313" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.877">
            <gDNA_intron_boundary i_start="48314" i_stop="48742" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="48743" e_stop="49171" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46812" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46817" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46830" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46830" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="48889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46877" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47000" stop="47040"/>
              <exon start="47134" stop="47241"/>
              <exon start="48239" stop="48313"/>
              <exon start="48743" stop="49171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588377" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTACCGATTGAATAATCTTCTTCTTCCTTAGGTTAACCTAATTGTGTCCCCTTCGCCTTACAGAGCTCGAAATCGGTAGCCATAGTCAATCAGGATGAGGAAGCTTAAAGCTCATGAAAAGAAGCTTCTGAAGAAGGTGAACTTCCTTGAATGGAAGAGAGAAGGAGGTCACAGAGAAGGTGATGTCATGCGTCGTTACCACGTCACTGGCAGAGACGACTACAAAAA : GTACTCAGGTTTGTGCAGAACAGTGCAGAAGCTTGTGAATATACTGAAGCAGATGGACCCAAGAGATCCATATAGAATAGAAATGACCGATTCTCTTCTAGAGAAGCT : GTACAACATGGGCGTAATAACTACAAGGAAAAGCTTATCCGTGTGTGAGAACTTATCTGTGTCATCCTTCTGCAG : GCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATGATGCAATGAATTGATGACTGGTGACAGATTTATGAAGCATTTGAGAATTGATTGAATGAGAGAAATGGAACACATTCTTCTTGGCCATTGTTGGAGTTCCCTGGCAGGTTTACCTCCTGCTAGTTTGCCTTGTACTACCTCCCCTCTACATTTTTGCTCCTGTAGACTGTTGAAGATGTACACATTATATTCAACAGTAAAGTTTAATAGA</gDNA_template>
            <first_frame> P  T  D  *  I  I  F  F  F  L  R  L  T  *  L  C  P  L  R  L  T  E  L  E  I  G  S  H  S  Q  S  G  *  G  S  L  K  L  M  K  R  S  F  *  R  R  *  T  S  L  N  G  R  E  K  E  V  T  E  K  V  M  S  C  V  V  T  T  S  L  A  E  T  T  T  K   : S  T  Q  V  C  A  E  Q  C  R  S  L  *  I  Y  *  S  R  W  T  Q  E  I  H  I  E  *  K  *  P  I  L  F  *  R  S   : C  T  T  W  A  *  *  L  Q  G  K  A  Y  P  C  V  R  T  Y  L  C  H  P  S  A   : G  V  G  C  P  L  S  W  *  G  *  S  L  L  N  T  *  R  K  Q  *  H  T  *  N  K  V  I  F  E  L  D  P  I  Q  L  L  T  Q  H  F  S  *  R  E  I  W  R  I  S  S  L  G  *  I  H  L  R  L  G  E  R  S  W  S  T  T  I  S  *  T  I  M  M  Q  *  I  D  D  W  *  Q  I  Y  E  A  F  E  N  *  L  N  E  R  N  G  T  H  S  S  W  P  L  L  E  F  P  G  R  F  T  S  C  *  F  A  L  Y  Y  L  P  S  T  F  L  L  L  *  T  V  E  D  V  H  I  I  F  N  S  K  V  *  *  </first_frame>
            <second_frame>  L  P  I  E  *  S  S  S  S  L  G  *  P  N  C  V  P  F  A  L  Q  S  S  K  S  V  A  I  V  N  Q  D  E  E  A  *  S  S  *  K  E  A  S  E  E  G  E  L  P  *  M  E  E  R  R  R  S  Q  R  R  *  C  H  A  S  L  P  R  H  W  Q  R  R  L  Q  K  :  V  L  R  F  V  Q  N  S  A  E  A  C  E  Y  T  E  A  D  G  P  K  R  S  I  *  N  R  N  D  R  F  S  S  R  E  A  :  V  Q  H  G  R  N  N  Y  K  E  K  L  I  R  V  *  E  L  I  C  V  I  L  L  Q  :  A  *  V  V  H  Y  L  G  E  A  E  V  C  *  T  H  E  G  S  S  D  I  H  R  T  R  S  Y  S  S  W  T  R  Y  S  C  *  P  S  I  S  R  D  E  K  Y  G  G  F  H  H  L  G  R  Y  I  *  D  *  E  K  G  L  G  V  Q  R  S  A  R  R  L  *  C  N  E  L  M  T  G  D  R  F  M  K  H  L  R  I  D  *  M  R  E  M  E  H  I  L  L  G  H  C  W  S  S  L  A  G  L  P  P  A  S  L  P  C  T  T  S  P  L  H  F  C  S  C  R  L  L  K  M  Y  T  L  Y  S  T  V  K  F  N  R </second_frame>
            <third_frame>   Y  R  L  N  N  L  L  L  P  *  V  N  L  I  V  S  P  S  P  Y  R  A  R  N  R  *  P  *  S  I  R  M  R  K  L  K  A  H  E  K  K  L  L  K  K  V  N  F  L  E  W  K  R  E  G  G  H  R  E  G  D  V  M  R  R  Y  H  V  T  G  R  D  D  Y  K  K :   Y  S  G  L  C  R  T  V  Q  K  L  V  N  I  L  K  Q  M  D  P  R  D  P  Y  R  I  E  M  T  D  S  L  L  E  K  L :   Y  N  M  G  V  I  T  T  R  K  S  L  S  V  C  E  N  L  S  V  S  S  F  C  R :   R  R  L  S  T  I  L  V  R  L  K  F  A  E  H  M  K  E  A  V  T  Y  I  E  Q  G  H  I  R  V  G  P  D  T  V  V  D  P  A  F  L  V  T  R  N  M  E  D  F  I  T  W  V  D  T  S  K  I  R  R  K  V  L  E  Y  N  D  Q  L  D  D  Y  D  A  M  N  *  *  L  V  T  D  L  *  S  I  *  E  L  I  E  *  E  K  W  N  T  F  F  L  A  I  V  G  V  P  W  Q  V  Y  L  L  L  V  C  L  V  L  P  P  L  Y  I  F  A  P  V  D  C  *  R  C  T  H  Y  I  Q  Q  *  S  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46898" stop="47040"/>
                    <exon start="47134" stop="47241"/>
                    <exon start="48239" stop="48313"/>
                    <exon start="48743" stop="48974"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRMRKLKAHEKKLLKKVNFLEWKREGGHREGDVMRRYHVTGRDDYKKYSGLCRTVQKLVNILKQMDPRDPYRIEMTDSLLEKLYNMGVITTRKSLSVCENLSVSSFCRRRLSTILVRLKFAEHMKEAVTYIEQGHIRVGPDTVVDPAFLVTRNMEDFITWVDTSKIRRKVLEYNDQLDDYDAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51578" PGL_stop="52900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51578" e_stop="52068"/>
            <exon e_start="52670" e_stop="52900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.998"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51578" e_stop="52068" e_length="491"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52069" i_stop="52669" i_length="601"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="52670" e_stop="52900" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51578" stop="52068"/>
              <exon start="52670" stop="52898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51578" stop="52068"/>
              <exon start="52670" stop="52880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51578" stop="52068"/>
              <exon start="52670" stop="52776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51578" stop="52068"/>
              <exon start="52670" stop="52738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51605" stop="52068"/>
              <exon start="52670" stop="52900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51854" stop="52068"/>
              <exon start="52670" stop="52880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGATGTTGAAAGTTGATATATACGTGTCTGTTTGGCTTCGATTCAAAAGTTTTTGGAAGTTTGCAAAGATTAGACTCTATTTGCTAGAGTATATTAAAAAGTTAGCAGTTACTGTGCTTTGCATTAGGAGCTTAAAAGGATTTAGTTTCTTTCTAGAAAAAGTAACATCGATGGTCTTACCTTTCTTAGTTTTATTGATATACTTTTACTGTTTCGTAGTGATGAATGTTGAGGTTCAAAAATAATGTTATTCCTTCTCTGTTTATCCTGTATTTGAATCACTGTTTCATTCAAGATCATTATGTTCTTCTTTGTTGAAATGAATATACCTTTCCTCATTGAATTTATTTATCATGCTATTGTTTAAGTTGGTTGACACAGCATGTTCTCTCCGGGTTGAATATAATATGGATGATTTGTACATTTATGGAGAAATCCTCAGCATTCTCCAACAATGAATGGAAGGAGCGAAAACCACACTGGACCAG : GATCTTTTATGTAGGGATATTCTTAAGTGGTCAGGCAATTAAGTTGAGTTACATATAAACTCTACACATGGGTTAATTCCTGAGACTGGTCATTTTCTTTTCCTTTTACAGTATCCAATCTCAATGACTATCAATTGAGTTCTTAATTTAAGATCAGAAATTGTATAAAGCAATCAAAATTGTGGAATTCTCAAGACTCATTTTTTTGAAGGTTAATTTTTTCATTCTTAT</gDNA_template>
            <first_frame> *  *  C  *  K  L  I  Y  T  C  L  F  G  F  D  S  K  V  F  G  S  L  Q  R  L  D  S  I  C  *  S  I  L  K  S  *  Q  L  L  C  F  A  L  G  A  *  K  D  L  V  S  F  *  K  K  *  H  R  W  S  Y  L  S  *  F  Y  *  Y  T  F  T  V  S  *  *  *  M  L  R  F  K  N  N  V  I  P  S  L  F  I  L  Y  L  N  H  C  F  I  Q  D  H  Y  V  L  L  C  *  N  E  Y  T  F  P  H  *  I  Y  L  S  C  Y  C  L  S  W  L  T  Q  H  V  L  S  G  L  N  I  I  W  M  I  C  T  F  M  E  K  S  S  A  F  S  N  N  E  W  K  E  R  K  P  H  W  T  R :   I  F  Y  V  G  I  F  L  S  G  Q  A  I  K  L  S  Y  I  *  T  L  H  M  G  *  F  L  R  L  V  I  F  F  S  F  Y  S  I  Q  S  Q  *  L  S  I  E  F  L  I  *  D  Q  K  L  Y  K  A  I  K  I  V  E  F  S  R  L  I  F  L  K  V  N  F  F  I  L   </first_frame>
            <second_frame>  D  D  V  E  S  *  Y  I  R  V  C  L  A  S  I  Q  K  F  L  E  V  C  K  D  *  T  L  F  A  R  V  Y  *  K  V  S  S  Y  C  A  L  H  *  E  L  K  R  I  *  F  L  S  R  K  S  N  I  D  G  L  T  F  L  S  F  I  D  I  L  L  L  F  R  S  D  E  C  *  G  S  K  I  M  L  F  L  L  C  L  S  C  I  *  I  T  V  S  F  K  I  I  M  F  F  F  V  E  M  N  I  P  F  L  I  E  F  I  Y  H  A  I  V  *  V  G  *  H  S  M  F  S  P  G  *  I  *  Y  G  *  F  V  H  L  W  R  N  P  Q  H  S  P  T  M  N  G  R  S  E  N  H  T  G  P   : G  S  F  M  *  G  Y  S  *  V  V  R  Q  L  S  *  V  T  Y  K  L  Y  T  W  V  N  S  *  D  W  S  F  S  F  P  F  T  V  S  N  L  N  D  Y  Q  L  S  S  *  F  K  I  R  N  C  I  K  Q  S  K  L  W  N  S  Q  D  S  F  F  *  R  L  I  F  S  F  L  </second_frame>
            <third_frame>   M  M  L  K  V  D  I  Y  V  S  V  W  L  R  F  K  S  F  W  K  F  A  K  I  R  L  Y  L  L  E  Y  I  K  K  L  A  V  T  V  L  C  I  R  S  L  K  G  F  S  F  F  L  E  K  V  T  S  M  V  L  P  F  L  V  L  L  I  Y  F  Y  C  F  V  V  M  N  V  E  V  Q  K  *  C  Y  S  F  S  V  Y  P  V  F  E  S  L  F  H  S  R  S  L  C  S  S  L  L  K  *  I  Y  L  S  S  L  N  L  F  I  M  L  L  F  K  L  V  D  T  A  C  S  L  R  V  E  Y  N  M  D  D  L  Y  I  Y  G  E  I  L  S  I  L  Q  Q  *  M  E  G  A  K  T  T  L  D  Q  :  D  L  L  C  R  D  I  L  K  W  S  G  N  *  V  E  L  H  I  N  S  T  H  G  L  I  P  E  T  G  H  F  L  F  L  L  Q  Y  P  I  S  M  T  I  N  *  V  L  N  L  R  S  E  I  V  *  S  N  Q  N  C  G  I  L  K  T  H  F  F  E  G  *  F  F  H  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51580" stop="51825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMLKVDIYVSVWLRFKSFWKFAKIRLYLLEYIKKLAVTVLCIRSLKGFSFFLEKVTSMVLPFLVLLIYFYCFVVMNVEVQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51923" stop="52068"/>
                    <exon start="52670" stop="52727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLSCYCLSWLTQHVLSGLNIIWMICTFMEKSSAFSNNEWKERKPHWTRIFYVGIFLSGQAIKLSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="57588" PGL_stop="53133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57588" e_stop="56726"/>
            <exon e_start="56000" e_stop="55494"/>
            <exon e_start="54284" e_stop="53133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57588" e_stop="56726" e_length="863"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56725" i_stop="56001" i_length="725"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56000" e_stop="55494" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55493" i_stop="54285" i_length="1209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54284" e_stop="53133" e_length="1152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57588" stop="57072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57429" stop="56726"/>
              <exon start="56000" stop="55923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57099" stop="56726"/>
              <exon start="56000" stop="55628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57099" stop="56726"/>
              <exon start="56000" stop="55932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55952" stop="55494"/>
              <exon start="54284" stop="53943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="55494"/>
              <exon start="54284" stop="53930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="55494"/>
              <exon start="54284" stop="54071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55546" stop="55494"/>
              <exon start="54284" stop="53783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55543" stop="55494"/>
              <exon start="54284" stop="53763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54239" stop="53481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54221" stop="53724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54192" stop="53567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54056" stop="53569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54037" stop="53793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53870" stop="53147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53869" stop="53282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53791" stop="53409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53730" stop="53133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53719" stop="53293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG : GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG : ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTACTTGAGTAG</gDNA_template>
            <first_frame> W  N  Q  L  R  V  F  F  *  L  W  R  A  *  H  *  K  Q  M  R  V  I  T  S  A  L  L  L  M  *  M  *  S  P  V  M  K  Q  V  L  V  N  R  Q  R  K  L  Y  Y  F  S  L  K  D  C  P  I  H  L  D  L  E  S  Q  I  S  S  R  G  T  L  R  W  S  Q  E  Y  C  L  T  *  R  T  G  N  L  Q  Q  W  K  L  L  Y  S  I  L  N  L  V  Y  R  I  G  A  N  L  I  G  C  K  N  F  T  K  T  I  *  M  M  K  Q  L  R  S  K  L  Q  S  K  N  T  P  *  R  I  L  L  G  F  Q  N  P  S  R  Q  V  L  V  E  R  G  *  K  I  L  Y  W  K  K  G  L  L  G  L  Q  S  A  I  *  K  K  P  L  L  S  L  D  R  L  V  S  N  Q  L  W  S  G  P  R  V  *  S  F  H  L  F  L  L  F  Y  P  C  *  G  V  C  R  W  A  I  *  Q  L  K  S  A  *  M  K  E  E  S  C  H  C  F  M  L  *  R  V  S  L  V  R  M  R  L  E  P  G  L  K  T  C  W  T  H  C  L  T  K  R  E  K  V  M  G  S  *  L  R  K  F  T  N  Y  V  M  R  Q  R  M  R  *  G  D  E  H  *  G  R  E  Q  N  Y  C  R :   D  L  V  C  T  K  N  C  P  Q  M  V  V  N  V  L  L  L  L  D  L  S  W  K  V  W  K  M  L  R  M  R  K  R  K  A  W  L  A  W  F  V  V  K  A  T  A  C  A  L  Q  T  C  L  V  F  T  L  I  V  N  G  L  I  L  V  L  E  A  L  E  M  L  V  G  T  V  F  T  Q  R  S  A  I  S  T  S  Y  I  F  S  A  I  R  R  L  N  E  Q  M  R  P  *  V  N  L  K  K  N  G  M  E  Q  P  L  E  I  T  R  H  Y  A  I  I  F  S  L  *  E  V  H  Q  Y  Q  *  G  N  I  Y  A  T  L  T  N  T  G  I  T  *  M  L  L  G  V  L  M  E  V  G  S  G  C  *  L  T  T  L  F  * :   C  L  L  D  L  P  L  V  L  H  L  V  Q  I  A  G  V  V  E  K  T  V  M  L  D  F  C  L  S  *  C  K  W  R  V  T  F  L  I  M  I  L  L  S  S  I  S  *  L  S  L  S  Q  P  I  *  V  L  L  H  Q  N  P  E  P  P  L  P  L  E  L  R  L  P  L  V  Q  R  R  L  S  S  S  *  W  L  P  H  F  F  Q  N  P  M  S  R  G  C  R  I  A  L  P  F  Y  N  E  V  Y  T  M  R  I  S  S  G  L  M  V  G  L  C  L  A  R  P  P  I  C  L  G  L  *  K  Q  S  R  E  V  Q  V  H  L  L  L  R  L  G  D  Q  L  S  Y  S  Q  L  F  N  Q  C  L  S  T  L  V  *  *  N  N  C  S  A  S  L  R  *  K  N  H  L  V  R  P  P  C  E  P  K  G  L  P  R  M  W  K  M  M  T  R  A  E  S  *  K  A  G  S  *  S  *  K  R  D  Y  *  M  L  R  K  W  Q  I  S  R  L  N  C  Y  R  G  L  M  T  *  L  Q  Q  R  I  S  R  R  H  L  M  F  L  V  F  *  V  M  C  F  L  G  S  V  D  V  K  I  M  Y  M  L  Q  S  V  V  G  K  T  D  P  S  K  V  F  L  *  H  A  F  W  V  Q  S  M  *  G  L  C  T  W  W  R  A  K  Q  R  I  C  R  R  L  T  S  V  K  Y  C  I  P  *  S  S  Y  F  D  I  C  G  I  F  F  C  R  C  V  F  Y  S  L  V  T  R  I  A  S  E  P  S  E  F  C  F  S  M  *  S  K  C  T  S  F  C  I  D  H  N  L  K  P  V  K  *  P  P  L  W  A  A  K  N  L  N  S  F  V  Y  L  S   </first_frame>
            <second_frame>  G  T  S  *  G  Y  S  F  D  C  G  E  L  N  T  R  S  K  *  E  *  *  H  Q  H  Y  F  *  C  R  C  S  L  Q  *  *  S  R  C  W  *  T  G  K  E  N  C  T  T  F  P  *  K  I  V  P  S  I  W  T  *  K  V  K  *  A  A  E  E  H  *  D  G  R  K  N  I  A  L  L  D  V  R  G  T  C  S  N  G  S  S  C  T  A  F  *  T  L  F  T  E  L  A  R  I  *  *  A  A  K  T  L  R  R  Q  Y  E  *  *  N  N  C  A  A  S  F  K  A  K  I  H  P  R  E  F  C  *  G  F  R  I  P  Q  D  K  F  L  W  R  E  V  E  R  Y  Y  T  G  K  R  D  Y  W  G  C  N  Q  P  S  K  R  N  L  C  F  H  W  T  G  W  F  Q  I  N  C  G  V  D  L  G  F  K  A  S  I  Y  S  S  Y  F  I  H  A  E  G  F  V  D  G  P  F  S  N  S  K  V  H  R  *  R  R  N  L  A  I  A  S  C  F  R  G  C  R  W  *  E  *  D  W  S  Q  G  *  K  L  V  G  H  T  V  *  Q  R  G  K  R  *  W  V  L  S  S  E  S  S  P  T  T  S  C  D  K  G  *  D  E  E  T  S  I  E  E  E  S  R  I  T  A   : G  T  W  Y  A  P  R  T  V  L  R  W  W  *  T  Y  C  C  C  S  T  Y  L  G  R  F  G  R  C  *  G  *  G  R  G  R  L  G  L  H  G  L  S  *  R  L  P  L  A  P  Y  R  L  A  W  C  L  H  L  *  *  T  G  *  S  W  C  W  K  P  W  K  C  S  W  G  L  C  L  H  N  G  Q  P  F  Q  H  H  T  F  S  V  P  S  G  G  *  T  S  R  C  G  L  K  *  T  *  K  R  M  G  W  S  S  P  *  K  *  R  D  T  M  Q  *  S  F  P  S  E  R  S  I  S  T  N  R  A  I  Y  T  L  R  *  P  I  L  G  L  P  E  C  S  W  A  C  *  W  K  S  A  P  V  V  N  L  R  H  C  F   : D  A  C  S  I  C  H  W  C  F  I  *  C  R  L  Q  G  W  W  K  R  Q  *  C  S  I  F  A  F  H  D  A  N  G  A  S  P  S  *  S  *  F  F  S  A  A  Y  H  D  *  V  Y  L  N  L  F  K  F  S  C  I  R  I  Q  S  L  H  Y  L  W  N  S  D  F  R  W  Y  R  G  D  C  P  V  H  D  G  Y  L  T  S  F  R  I  L  *  V  V  A  A  E  S  R  F  L  F  T  T  R  Y  I  P  C  V  Y  P  A  D  S  W  *  A  C  A  S  L  V  P  Q  Y  V  W  G  F  E  N  R  V  G  K  Y  K  Y  I  C  F  *  G  W  G  I  N  *  V  I  L  N  Y  S  T  N  A  C  L  H  W  F  D  R  T  T  A  A  L  L  *  G  K  K  I  I  *  C  D  H  L  A  N  P  R  D  F  Q  E  C  G  R  *  *  R  G  Q  K  A  R  R  L  G  V  S  H  E  R  E  T  I  K  C  *  G  N  G  R  F  L  V  *  T  V  I  V  A  *  *  H  D  F  S  N  G  F  P  G  G  I  *  C  S  W  C  F  E  *  C  A  F  W  V  Q  S  M  *  R  L  C  T  C  C  N  Q  W  W  E  K  L  I  H  Q  R  C  F  C  D  M  L  S  G  F  S  Q  C  E  D  Y  V  H  G  G  G  P  N  R  E  F  V  E  G  S  L  R  L  S  I  V  F  P  S  L  L  T  S  I  Y  V  E  Y  S  F  V  G  A  S  F  I  P  L  L  H  E  L  R  V  S  L  L  S  F  V  S  Q  C  S  R  S  V  H  L  S  V  S  T  I  T  *  N  Q  *  N  S  P  H  F  G  Q  Q  K  I  *  I  V  L  S  T  *  V  </second_frame>
            <third_frame>   E  P  A  E  G  I  L  L  I  V  E  S  L  T  L  E  A  N  E  S  D  N  I  S  I  T  S  D  V  D  V  V  S  S  D  E  A  G  A  G  E  Q  A  K  K  I  V  L  L  F  L  E  R  L  S  H  P  S  G  L  R  K  S  N  K  Q  Q  R  N  T  E  M  V  A  R  I  L  P  Y  L  T  Y  G  E  P  A  A  M  E  A  L  V  Q  H  F  E  P  C  L  Q  N  W  R  E  F  D  R  L  Q  K  L  Y  E  D  N  M  N  D  E  T  I  A  Q  Q  A  S  K  Q  K  Y  T  L  E  N  F  V  R  V  S  E  S  L  K  T  S  S  C  G  E  R  L  K  D  I  I  L  E  K  G  I  T  G  A  A  I  S  H  L  K  E  T  F  A  F  T  G  Q  V  G  F  K  S  T  V  E  W  T  S  G  L  K  L  P  S  I  P  L  I  L  S  M  L  R  G  L  S  M  G  H  L  A  T  Q  K  C  I  D  E  G  G  I  L  P  L  L  H  A  L  E  G  V  A  G  E  N  E  I  G  A  R  A  E  N  L  L  D  T  L  S  D  K  E  G  K  G  D  G  F  L  A  Q  K  V  H  Q  L  R  H  A  T  K  D  E  M  R  R  R  A  L  R  K  R  A  E  L  L  Q  :  G  L  G  M  H  Q  E  L  S  S  D  G  G  E  R  I  V  V  A  R  P  I  L  E  G  L  E  D  V  E  D  E  E  E  E  G  L  A  C  M  V  C  R  E  G  Y  R  L  R  P  T  D  L  L  G  V  Y  T  Y  S  K  R  V  N  L  G  V  G  S  P  G  N  A  R  G  D  C  V  Y  T  T  V  S  H  F  N  I  I  H  F  Q  C  H  Q  E  A  K  R  A  D  A  A  L  S  K  P  K  K  E  W  D  G  A  A  L  R  N  N  E  T  L  C  N  N  L  F  P  L  R  G  P  S  V  P  I  G  Q  Y  I  R  Y  V  D  Q  Y  W  D  Y  L  N  A  L  G  R  A  D  G  S  R  L  R  L  L  T  Y  D  I  V  L  :  M  L  A  R  F  A  T  G  A  S  F  S  A  D  C  R  G  G  G  K  D  S  N  A  R  F  L  P  F  M  M  Q  M  A  R  H  L  L  D  H  D  S  S  Q  Q  H  I  M  I  K  S  I  S  T  Y  L  S  S  P  A  S  E  S  R  A  S  T  T  S  G  T  Q  T  S  A  G  T  E  E  T  V  Q  F  M  M  V  T  S  L  L  S  E  S  Y  E  S  W  L  Q  N  R  A  S  F  L  Q  R  G  I  Y  H  A  Y  I  Q  R  T  H  G  R  P  V  P  R  S  S  P  N  M  S  G  A  L  K  T  E  S  G  S  T  S  T  S  A  S  E  A  G  G  S  I  E  L  F  S  T  I  Q  P  M  L  V  Y  T  G  L  I  E  Q  L  Q  R  F  F  K  V  K  K  S  S  S  A  T  T  L  R  T  Q  G  T  S  K  N  V  E  D  D  D  E  G  R  K  L  E  G  W  E  L  V  M  K  E  R  L  L  N  V  K  E  M  A  D  F  S  S  E  L  L  S  W  L  D  D  M  T  S  A  T  D  F  Q  E  A  F  D  V  L  G  V  L  S  D  V  L  S  G  F  S  R  C  E  D  Y  V  H  A  A  I  S  G  G  K  N  *  S  I  K  G  V  S  V  T  C  F  L  G  S  V  N  V  R  I  M  Y  M  V  A  G  Q  T  E  N  L  S  K  A  H  F  G  *  V  L  Y  S  L  V  F  L  L  R  Y  M  W  N  I  L  L  *  V  R  L  L  F  P  C  Y  T  N  C  E  *  A  F  *  V  L  F  L  N  V  V  E  V  Y  I  F  L  Y  R  P  *  L  K  T  S  K  I  A  P  T  L  G  S  K  K  F  K  *  F  C  L  L  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57586" stop="56726"/>
                    <exon start="56000" stop="55494"/>
                    <exon start="54284" stop="53463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2187</number_coding_nucleotides>
                  <number_encoded_amino_acids>729</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAEGILLIVESLTLEANESDNISITSDVDVVSSDEAGAGEQAKKIVLLFLERLSHPSGLRKSNKQQRNTEMVARILPYLTYGEPAAMEALVQHFEPCLQNWREFDRLQKLYEDNMNDETIAQQASKQKYTLENFVRVSESLKTSSCGERLKDIILEKGITGAAISHLKETFAFTGQVGFKSTVEWTSGLKLPSIPLILSMLRGLSMGHLATQKCIDEGGILPLLHALEGVAGENEIGARAENLLDTLSDKEGKGDGFLAQKVHQLRHATKDEMRRRALRKRAELLQGLGMHQELSSDGGERIVVARPILEGLEDVEDEEEEGLACMVCREGYRLRPTDLLGVYTYSKRVNLGVGSPGNARGDCVYTTVSHFNIIHFQCHQEAKRADAALSKPKKEWDGAALRNNETLCNNLFPLRGPSVPIGQYIRYVDQYWDYLNALGRADGSRLRLLTYDIVLMLARFATGASFSADCRGGGKDSNARFLPFMMQMARHLLDHDSSQQHIMIKSISTYLSSPASESRASTTSGTQTSAGTEETVQFMMVTSLLSESYESWLQNRASFLQRGIYHAYIQRTHGRPVPRSSPNMSGALKTESGSTSTSASEAGGSIELFSTIQPMLVYTGLIEQLQRFFKVKKSSSATTLRTQGTSKNVEDDDEGRKLEGWELVMKERLLNVKEMADFSSELLSWLDDMTSATDFQEAFDVLGVLSDVLSGFSRCEDYVHAAISGGKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="84421" PGL_stop="82864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84421" e_stop="84299"/>
            <exon e_start="84203" e_stop="82864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84421" e_stop="84299" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.890">
            <gDNA_intron_boundary i_start="84298" i_stop="84204" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84203" e_stop="82864" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84421" stop="84299"/>
              <exon start="84203" stop="83661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84421" stop="84299"/>
              <exon start="84203" stop="83745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84411" stop="84299"/>
              <exon start="84203" stop="83818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84195" stop="83647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84195" stop="83677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83811" stop="83404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83678" stop="83079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83677" stop="83033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83677" stop="83033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83677" stop="83034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83672" stop="83027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83537" stop="83033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83347" stop="82864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG : GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</gDNA_template>
            <first_frame> F  R  L  H  R  Q  R  I  L  G  I  G  I  T  Q  P  Q  L  L  R  E  L  F  S  V  I  P  A  S  S  N  T  S  Q  G  L  V  T  S  F  Q  :  V  L  L  S  L  *  N  V  Q  T  R  S  E  D  Q  V  F  T  R  R  *  K  P  M  S  M  G  N  S  V  *  T  F  L  F  L  *  V  N  M  S  R  K  S  R  D  V  L  *  S  *  S  R  A  A  S  H  I  V  L  W  R  R  Q  Q  L  H  L  P  F  I  S  S  Q  E  H  K  G  L  T  S  S  L  L  V  S  S  L  S  S  L  S  T  S  Q  I  S  V  A  K  S  Q  A  S  K  S  Q  K  R  N  *  Q  I  L  K  S  L  L  F  Q  I  P  M  I  L  H  F  T  L  Q  F  K  I  H  Q  R  Q  V  L  Y  F  H  L  F  L  G  Y  L  L  Y  H  C  S  L  L  C  Q  I  F  Q  D  F  Q  Y  H  Q  C  L  K  T  L  A  N  T  T  L  N  Q  K  L  Q  L  S  Q  I  F  S  I  Q  *  E  D  F  P  C  L  Q  I  H  F  F  H  H  L  Q  S  F  L  Q  T  H  F  Y  L  H  L  L  L  F  L  L  S  S  H  L  L  L  L  P  Y  F  L  P  Y  S  L  L  L  H  L  Q  Y  F  L  H  *  F  L  H  L  H  V  L  H  L  H  Y  S  L  R  L  S  H  R  S  Y  L  V  *  L  H  L  P  H  H  R  P  L  H  S  S  H  Q  S  Y  L  V  F  L  V  F  L  Q  L  P  L  L  H  L  Y  K  R  R  T  P  L  L  S  Q  E  Y  S  Y  T  N  T  C  H  I  A  W  Q  L  L  F  P  Y  A  S  V  L  L  Q  *  T  Y  S  T  L  F  Y  Y  L  L  C  F  L  I  S  V  Y  L  Y  N  F  Y  P  R  F  H  L  V  S  F  C  F  V  R  H  I  R  *  E  I  K  *  L  Y  D  M  *  A  T  S  I  K  A  K  L  I  S  D  C  V  Y  R  R  *  W  L  L  L  V  D  I  *  P  L  V  L  K  K  N  C  R  P  A  G  I  T  C  V  R  N  Q  I  P  I  Y  S  F  *  T  S  A  Q  Q  K  R  *  I  E  R  I  L  G   </first_frame>
            <second_frame>  F  D  F  T  G  R  E  Y  *  A  *  A  S  L  N  R  S  Y  *  G  N  C  F  L  *  Y  L  L  P  A  T  L  L  R  G  *  S  L  H  F  R :   C  Y  C  R  C  R  M  C  R  L  G  Q  K  I  K  F  L  Q  G  G  E  N  Q  *  A  W  E  I  Q  C  R  P  S  Y  F  C  K  *  T  C  Q  E  N  Q  G  M  F  C  E  A  D  Q  E  Q  R  A  I  L  C  C  G  V  D  S  N  F  I  F  P  S  S  Q  V  K  N  T  R  D  S  H  L  L  C  W  F  L  H  F  Q  A  S  Q  P  A  R  S  L  *  P  K  A  K  H  P  K  V  K  K  E  I  N  R  S  S  K  V  C  Y  F  K  S  Q  *  S  Y  I  L  P  S  N  S  R  S  T  S  A  R  Y  F  T  S  T  S  S  *  A  T  S  F  T  I  A  P  S  F  A  R  S  S  R  T  S  N  I  T  S  A  *  R  L  *  Q  I  L  L  S  I  R  N  C  S  *  A  K  F  F  Q  S  N  R  R  T  S  P  A  S  K  S  T  S  S  T  T  F  N  P  S  S  K  P  I  S  T  S  T  F  Y  Y  S  S  Y  H  P  I  S  S  S  F  H  I  S  S  L  I  P  F  S  S  T  F  N  I  S  S  I  N  S  F  T  S  T  F  S  T  F  I  I  P  S  A  Y  P  T  V  H  T  W  F  N  S  I  S  P  T  T  A  P  F  T  L  P  T  N  H  T  W  F  S  W  C  S  S  S  F  H  F  F  I  S  T  K  E  E  P  L  S  L  V  K  N  T  V  T  Q  T  P  V  I  *  L  G  N  F  F  F  L  M  P  L  Y  F  S  N  K  P  T  P  L  C  F  T  T  F  F  V  S  *  F  L  F  T  F  I  I  F  I  L  G  F  I  L  F  R  F  V  L  L  D  I  L  D  R  K  S  S  D  C  M  I  C  K  L  L  Q  *  K  L  N  L  S  A  T  V  F  I  E  D  N  G  Y  C  *  *  I  F  N  L  *  C  *  R  K  I  V  D  L  L  V  L  H  V  S  G  T  K  Y  L  Y  I  V  S  E  L  L  L  N  R  R  D  E  L  N  E  F  L  D  </second_frame>
            <third_frame>   S  T  S  Q  A  E  N  T  R  H  R  H  H  S  T  A  V  I  E  G  T  V  F  C  D  T  C  F  Q  Q  H  F  S  G  A  S  H  F  I  S   : G  A  T  V  A  V  E  C  A  D  S  V  R  R  S  S  F  Y  K  E  V  K  T  N  E  H  G  K  F  S  V  D  L  P  I  S  V  S  K  H  V  K  K  I  K  G  C  S  V  K  L  I  K  S  S  E  P  Y  C  A  V  A  S  T  A  T  S  S  S  L  H  L  K  S  R  T  Q  G  T  H  I  F  S  A  G  F  F  T  F  K  P  L  N  Q  P  D  L  C  S  Q  K  P  S  I  Q  K  S  K  K  K  L  T  D  P  Q  K  S  A  I  S  N  P  N  D  P  T  F  Y  P  P  I  Q  D  P  P  A  P  G  T  L  L  P  P  L  P  R  L  P  P  L  P  L  L  P  P  L  P  D  L  P  G  L  P  I  S  P  V  P  K  D  S  S  K  Y  Y  S  Q  S  E  T  A  A  K  P  N  F  F  N  P  I  G  G  L  P  L  P  P  N  P  L  L  P  P  P  S  I  L  P  P  N  P  F  L  P  P  P  S  I  I  P  P  I  I  P  S  P  P  P  S  I  F  P  P  L  F  P  S  P  P  P  S  I  F  P  P  L  I  P  S  P  P  R  S  P  P  S  L  F  P  P  L  I  P  P  F  I  P  G  L  T  P  S  P  P  P  P  P  P  S  L  F  P  P  I  I  P  G  F  P  G  V  P  P  A  S  T  S  S  S  L  Q  K  K  N  P  S  P  *  S  R  I  Q  L  H  K  H  L  S  Y  S  L  A  T  S  F  S  L  C  L  C  T  S  P  I  N  L  L  H  F  V  L  L  P  S  L  F  L  D  F  C  L  P  L  *  F  L  S  S  V  S  S  C  F  V  L  F  C  *  T  Y  *  I  G  N  Q  V  I  V  *  Y  V  S  Y  F  N  K  S  *  T  Y  Q  R  L  C  L  *  K  I  M  A  I  A  S  R  Y  L  T  F  S  V  K  E  K  L  *  T  C  W  Y  Y  M  C  Q  E  P  N  T  Y  I  *  F  L  N  F  C  S  T  E  E  M  N  *  T  N  S  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84419" stop="84299"/>
                    <exon start="84203" stop="83281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STSQAENTRHRHHSTAVIEGTVFCDTCFQQHFSGASHFISGATVAVECADSVRRSSFYKEVKTNEHGKFSVDLPISVSKHVKKIKGCSVKLIKSSEPYCAVASTATSSSLHLKSRTQGTHIFSAGFFTFKPLNQPDLCSQKPSIQKSKKKLTDPQKSAISNPNDPTFYPPIQDPPAPGTLLPPLPRLPPLPLLPPLPDLPGLPISPVPKDSSKYYSQSETAAKPNFFNPIGGLPLPPNPLLPPPSILPPNPFLPPPSIIPPIIPSPPPSIFPPLFPSPPPSIFPPLIPSPPRSPPSLFPPLIPPFIPGLTPSPPPPPPSLFPPIIPGFPGVPPASTSSSLQKKNPSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83042" PGL_stop="83305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83042" e_stop="83305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="83042" e_stop="83305" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83042" stop="83305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACAAAACGAAACAAGATGAAACCGAGGATAAAAATTATAAAGGTAAACAGAAATCAAGAAACAAAGAAGGTAGTAAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGACAGGTGTTTGTGTAACTGTATTCTTGACTAAGGAGAGGGGTTCTTCTTTTGT</gDNA_template>
            <first_frame> *  L  L  L  K  *  L  T  Y  H  T  I  T  *  F  P  I  *  Y  V  *  Q  N  K  T  K  Q  D  E  T  E  D  K  N  Y  K  G  K  Q  K  S  R  N  K  E  G  S  K  T  K  W  S  R  F  I  G  E  V  Q  R  H  K  E  K  E  V  A  K  L  Y  D  R  C  L  C  N  C  I  L  D  *  G  E  G  F  F  F  C </first_frame>
            <second_frame>  S  F  Y  *  S  S  L  H  I  I  Q  S  L  D  F  L  S  N  M  S  N  K  T  K  R  N  K  M  K  P  R  I  K  I  I  K  V  N  R  N  Q  E  T  K  K  V  V  K  Q  S  G  V  G  L  L  E  K  Y  R  G  I  R  K  K  K  L  P  S  Y  M  T  G  V  C  V  T  V  F  L  T  K  E  R  G  S  S  F   </second_frame>
            <third_frame>   A  F  I  E  V  A  Y  I  S  Y  N  H  L  I  S  Y  L  I  C  L  T  K  Q  N  E  T  R  *  N  R  G  *  K  L  *  R  *  T  E  I  K  K  Q  R  R  *  *  N  K  V  E  *  V  Y  W  R  S  T  E  A  *  G  K  R  S  C  Q  A  I  *  Q  V  F  V  *  L  Y  S  *  L  R  R  G  V  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83055" stop="83303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLHIIQSLDFLSNMSNKTKRNKMKPRIKIIKVNRNQETKKVVKQSGVGLLEKYRGIRKKKLPSYMTGVCVTVFLTKERGSSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="93523" PGL_stop="99208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93523" e_stop="93635"/>
            <exon e_start="94312" e_stop="94650"/>
            <exon e_start="95416" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93523" e_stop="93635" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94312" e_stop="94650" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95842" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="98613" e_stop="98995" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93523" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93528" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93535" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93535" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93535" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93535" stop="93635"/>
              <exon start="94312" stop="94650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93545" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93546" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93546" stop="93635"/>
              <exon start="94312" stop="94456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93581" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94323" stop="94650"/>
              <exon start="95416" stop="95801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94324" stop="94650"/>
              <exon start="95416" stop="95842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94371" stop="94650"/>
              <exon start="95416" stop="95454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95466" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95566" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96171" stop="96253"/>
              <exon start="98613" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAC</gDNA_template>
            <first_frame> K  N  I  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T  G  S  D  T  I  L  Y  L  F  Q  </first_frame>
            <second_frame>  R  T  L  F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S  L  D  L  I  L  F  Y  I  C  S  N </second_frame>
            <third_frame>   E  H  C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  W  I  *  Y  Y  F  I  S  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94459" stop="94650"/>
                    <exon start="95416" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93523" e_stop="93635"/>
            <exon e_start="94312" e_stop="94650"/>
            <exon e_start="95416" e_stop="95470"/>
            <exon e_start="95541" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93523" e_stop="93635" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93636" i_stop="94311" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94312" e_stop="94650" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95470" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95471" i_stop="95540" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95541" e_stop="95842" e_length="302"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="6" e_score="0.909">
            <gDNA_exon_boundary e_start="98613" e_stop="98964" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93523" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93535" stop="93635"/>
              <exon start="94312" stop="94650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93546" stop="93635"/>
              <exon start="94312" stop="94456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93581" stop="93635"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94325" stop="94650"/>
              <exon start="95416" stop="95470"/>
              <exon start="95541" stop="95684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94371" stop="94650"/>
              <exon start="95416" stop="95454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95566" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96171" stop="96253"/>
              <exon start="98613" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG : ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> K  N  I  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  :  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  R  T  L  F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R :   P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   E  H  C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q   : D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95436" stop="95470"/>
                    <exon start="95541" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTTCHCFIHSRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94305" e_stop="94650"/>
            <exon e_start="95416" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94305" e_stop="94650" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95842" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98613" e_stop="98964" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94305" stop="94650"/>
              <exon start="95416" stop="95599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94306" stop="94650"/>
              <exon start="95416" stop="95842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94323" stop="94650"/>
              <exon start="95416" stop="95801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94324" stop="94650"/>
              <exon start="95416" stop="95842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94371" stop="94650"/>
              <exon start="95416" stop="95454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95466" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95566" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96171" stop="96253"/>
              <exon start="98613" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> C  T  G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  V  Q  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   Y  R  *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94459" stop="94650"/>
                    <exon start="95416" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93718" e_stop="93784"/>
            <exon e_start="94312" e_stop="94650"/>
            <exon e_start="95416" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93718" e_stop="93784" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93785" i_stop="94311" i_length="527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94312" e_stop="94650" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94651" i_stop="95415" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95416" e_stop="95842" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98613" e_stop="98964" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93718" stop="93784"/>
              <exon start="94312" stop="94650"/>
              <exon start="95416" stop="95842"/>
              <exon start="96144" stop="96193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94323" stop="94650"/>
              <exon start="95416" stop="95801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94324" stop="94650"/>
              <exon start="95416" stop="95842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94371" stop="94650"/>
              <exon start="95416" stop="95454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95466" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95566" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96171" stop="96253"/>
              <exon start="98613" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> I  D  C  K  L  L  *  T  E  M  G  F  I  G  I  G  *  C  R  D  F  H   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  S  I  V  N  C  Y  E  L  K  W  V  S  S  E  S  V  D  A  E  I  F  T  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   R  L  *  T  V  M  N  *  N  G  F  H  R  N  R  L  M  Q  R  F  S  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94459" stop="94650"/>
                    <exon start="95416" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="96143" e_stop="96253"/>
            <exon e_start="98613" e_stop="98964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96143" e_stop="96253" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98613" e_stop="98964" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96143" stop="96253"/>
              <exon start="98613" stop="98947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301111" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96171" stop="96253"/>
              <exon start="98613" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </first_frame>
            <second_frame>  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </second_frame>
            <third_frame>   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="95343" e_stop="95344"/>
            <exon e_start="95416" e_stop="95842"/>
            <exon e_start="96144" e_stop="96253"/>
            <exon e_start="98613" e_stop="98886"/>
            <exon e_start="99200" e_stop="99208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.136" e_score="0.850"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95343" e_stop="95344" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="95345" i_stop="95415" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="95416" e_stop="95842" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="95843" i_stop="96143" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96144" e_stop="96253" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96254" i_stop="98612" i_length="2359"/>
          </intron>
          <exon e_serial="4" e_score="0.850">
            <gDNA_exon_boundary e_start="98613" e_stop="98886" e_length="274"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.136">
            <gDNA_intron_boundary i_start="98887" i_stop="99199" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="99200" e_stop="99208" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95343" stop="95344"/>
              <exon start="95416" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98886"/>
              <exon start="99200" stop="99208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95566" stop="95842"/>
              <exon start="96144" stop="96253"/>
              <exon start="98613" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGA : AAGTAATTA</gDNA_template>
            <first_frame> C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  :  K  *  L </first_frame>
            <second_frame>   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E :   S  N   </second_frame>
            <third_frame>   :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M   : K  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95416" stop="95842"/>
                    <exon start="96144" stop="96253"/>
                    <exon start="98613" stop="98639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="94459" PGL_stop="93658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94459" e_stop="93658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94459" e_stop="93658" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94459" stop="93658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</gDNA_template>
            <first_frame> I  R  W  L  W  M  Q  N  L  *  E  Y  N  L  R  K  M  Q  L  G  T  L  S  L  Q  E  T  L  N  E  L  M  P  F  M  T  K  T  F  R  K  N  F  K  N  C  C  V  S  P  V  Q  V  K  N  N  Y  H  I  C  I  D  G  E  I  H  G  W  S  T  S  S  D  T  R  K  L  Q  L  P  K  N  E  I  N  K  L  T  V  *  I  *  Y  V  S  K  Q  N  H  I  K  F  K  F  I  N  S  F  F  G  I  I  Q  L  P  N  T  Q  Q  I  A  I  K  *  K  N  I  N  R  W  T  L  *  I  C  R  E  L  F  L  I  P  N  L  K  H  H  L  *  E  L  N  S  Q  I  V  I  I  I  L  I  S  L  I  R  S  K  G  N  S  H  T  T  V  L  K  T  Q  L  N  R  K  Q  E  K  I  K  T  K  N  D  Q  Q  N  N  T  N  S  D  Q  E  S  R  K  S  R  F  L  Q  F  K  S  R  N  C  I  I  D  P  *  K  T  E  L  Y  R  E  N  L  C  I  N  R  F  R  *  N  P  F  Q  F  I  T  V  Y  N  R  L  K  L  Q  S  V  G  D  R  *  K  *  A  *  N  T  V  I  K  K  </first_frame>
            <second_frame>  L  D  G  Y  G  C  K  T  C  K  N  I  T  Y  G  K  C  N  W  A  P  S  L  F  R  K  P  *  M  S  *  C  P  S  *  P  R  P  S  E  K  I  S  K  T  V  V  Y  H  L  Y  K  *  R  T  T  I  I  Y  A  L  M  E  K  Y  M  D  G  L  P  R  V  T  Q  E  N  Y  S  F  R  R  M  K  *  I  S  L  Q  F  K  F  D  M  *  A  S  K  I  T  L  N  S  N  L  *  T  A  S  L  A  *  S  S  C  L  T  L  N  K  L  Q  *  N  K  K  T  *  I  D  G  H  Y  K  F  A  G  N  Y  S  *  F  L  I  L  N  T  T  C  E  N  L  I  L  K  L  L  S  S  S  *  F  L  *  *  E  A  K  G  T  L  I  Q  Q  C  *  R  H  S  *  T  E  N  K  K  K  L  K  Q  K  M  I  N  K  T  T  P  T  V  I  K  N  Q  E  N  Q  D  F  Y  N  S  N  Q  E  I  A  L  S  I  P  K  K  Q  N  F  T  V  K  I  S  A  S  T  D  S  D  E  T  H  F  S  S  *  Q  F  T  I  D  *  S  S  N  Q  *  E  I  D  K  S  E  R  K  I  Q  *  *  K  K </second_frame>
            <third_frame>   *  M  V  M  D  A  K  L  V  R  I  *  L  T  E  N  A  I  G  H  P  L  S  S  G  N  P  E  *  V  D  A  L  H  D  Q  D  L  Q  K  K  F  Q  K  L  L  C  I  T  C  T  S  K  E  Q  L  S  Y  M  H  *  W  R  N  T  W  M  V  Y  L  E  *  H  K  K  I  T  A  S  E  E  *  N  K  *  A  Y  S  L  N  L  I  C  E  Q  A  K  S  H  *  I  Q  I  Y  K  Q  L  L  W  H  N  P  A  A  *  H  S  T  N  C  N  K  I  K  K  H  K  *  M  D  T  I  N  L  Q  G  I  I  L  N  S  *  S  *  T  P  L  V  R  T  *  F  S  N  C  Y  H  H  L  N  F  F  N  K  K  Q  R  E  L  S  Y  N  S  V  K  D  T  A  K  P  K  T  R  K  N  *  N  K  K  *  S  T  K  Q  H  Q  Q  *  S  R  I  K  K  I  K  I  S  T  I  Q  I  K  K  L  H  Y  R  S  L  K  N  R  T  L  P  *  K  S  L  H  Q  P  I  P  M  K  P  I  S  V  H  N  S  L  Q  S  I  K  A  P  I  S  R  R  *  I  K  V  S  V  K  Y  S  D  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94429" stop="94190"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYNLRKMQLGTLSLQETLNELMPFMTKTFRKNFKNCCVSPVQVKNNYHICIDGEIHGWSTSSDTRKLQLPKNEINKLTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94012" stop="93800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELNSQIVIIILISLIRSKGNSHTTVLKTQLNRKQEKIKTKNDQQNNTNSDQESRKSRFLQFKSRNCIIDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="101927" PGL_stop="98979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101927" e_stop="101740"/>
            <exon e_start="101071" e_stop="100924"/>
            <exon e_start="100841" e_stop="100722"/>
            <exon e_start="100621" e_stop="100578"/>
            <exon e_start="100492" e_stop="100367"/>
            <exon e_start="100045" e_stop="99961"/>
            <exon e_start="99586" e_stop="99530"/>
            <exon e_start="99437" e_stop="99132"/>
            <exon e_start="98985" e_stop="98979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101740" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101071" e_stop="100924" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="100722" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100621" e_stop="100578" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100492" e_stop="100367" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99961" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99586" e_stop="99530" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99132" e_length="306"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="99131" i_stop="98986" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="0.714">
            <gDNA_exon_boundary e_start="98985" e_stop="98979" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101922" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101890" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101889" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101875" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101857" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101828" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101828" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101815" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101786" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101764" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101764" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101061" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101036" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100979" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99132"/>
              <exon start="98985" stop="98979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100930" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100787" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99987" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99562" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA : ATATAAA</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  :  I  *  </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  * :   Y  K </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y   : N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101834" stop="101740"/>
                    <exon start="101071" stop="100924"/>
                    <exon start="100841" stop="100722"/>
                    <exon start="100621" stop="100578"/>
                    <exon start="100492" stop="100367"/>
                    <exon start="100045" stop="99961"/>
                    <exon start="99586" stop="99530"/>
                    <exon start="99437" stop="99351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101927" e_stop="101740"/>
            <exon e_start="101071" e_stop="100924"/>
            <exon e_start="100841" e_stop="100722"/>
            <exon e_start="100621" e_stop="100578"/>
            <exon e_start="100492" e_stop="100367"/>
            <exon e_start="100045" e_stop="99961"/>
            <exon e_start="99586" e_stop="99530"/>
            <exon e_start="99437" e_stop="99108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101740" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101071" e_stop="100924" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="100722" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100621" e_stop="100578" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100492" e_stop="100367" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99961" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99586" e_stop="99530" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99108" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101922" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101890" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101889" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101875" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101857" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101828" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101828" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101815" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101786" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101764" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101764" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101061" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101036" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100939" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100930" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100787" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99987" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99562" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S  T  L  Y </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I  V  H  Y   </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  Y  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101834" stop="101740"/>
                    <exon start="101071" stop="100924"/>
                    <exon start="100841" stop="100722"/>
                    <exon start="100621" stop="100578"/>
                    <exon start="100492" stop="100367"/>
                    <exon start="100045" stop="99961"/>
                    <exon start="99586" stop="99530"/>
                    <exon start="99437" stop="99351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101072" e_stop="100924"/>
            <exon e_start="100841" e_stop="100722"/>
            <exon e_start="100621" e_stop="100578"/>
            <exon e_start="100492" e_stop="100367"/>
            <exon e_start="100045" e_stop="99961"/>
            <exon e_start="99586" e_stop="99530"/>
            <exon e_start="99437" e_stop="99108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101072" e_stop="100924" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="100722" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100621" e_stop="100578" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100492" e_stop="100367" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99961" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99960" i_stop="99587" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99586" e_stop="99530" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99108" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101072" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101061" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101036" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100939" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100930" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100787" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99987" stop="99961"/>
              <exon start="99586" stop="99530"/>
              <exon start="99437" stop="99137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99562" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</gDNA_template>
            <first_frame> G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I  V  H  Y   </first_frame>
            <second_frame>  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  Y  I  I  </second_frame>
            <third_frame>   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S  T  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101070" stop="100924"/>
                    <exon start="100841" stop="100722"/>
                    <exon start="100621" stop="100578"/>
                    <exon start="100492" stop="100367"/>
                    <exon start="100045" stop="99961"/>
                    <exon start="99586" stop="99530"/>
                    <exon start="99437" stop="99351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="101927" e_stop="101740"/>
            <exon e_start="101071" e_stop="100924"/>
            <exon e_start="100841" e_stop="100722"/>
            <exon e_start="100621" e_stop="100578"/>
            <exon e_start="100492" e_stop="100367"/>
            <exon e_start="100045" e_stop="99530"/>
            <exon e_start="99437" e_stop="99132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101740" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="101739" i_stop="101072" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101071" e_stop="100924" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100923" i_stop="100842" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="100722" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="100721" i_stop="100622" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100621" e_stop="100578" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100577" i_stop="100493" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100492" e_stop="100367" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="100366" i_stop="100046" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99530" e_length="516"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="99529" i_stop="99438" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="99437" e_stop="99132" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101927" stop="101740"/>
              <exon start="101071" stop="100924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101922" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101889" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101875" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101828" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101815" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="99969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101764" stop="101740"/>
              <exon start="101071" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100367"/>
              <exon start="100045" stop="100008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101060" stop="100924"/>
              <exon start="100841" stop="100722"/>
              <exon start="100621" stop="100578"/>
              <exon start="100492" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100045" stop="99530"/>
              <exon start="99437" stop="99243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99562" stop="99530"/>
              <exon start="99437" stop="99132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  V  Y  F  H  S  F  Y  P  I  A  N  W  R  V  C  L  L  F  F  L  L  V  S  F  L  A  E  H  S  L  R  G  V  W  V  W  V  *  V  V  L  L  E  N  C  *  R  Q  *  *  S  S  P  S  Q  L  Y  L  Y  L  A  L  *  L  V  F  C  P  A  P  *  W  T  *  S  F  I  S  H  V  T  *  F  S  V  P  H  A  H  Y  Y  Y  Y  F  P  N  P  P  C  R  L  A  R  Q  *  D  R  S  Q  F  Y  K  Y  L  K  *  I  L  L  V  L  G  M  *  R  *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V   </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R  Y  I  S  T  A  S  I  Q  *  P  T  G  E  S  V  F  Y  F  S  C  S  F  P  F  S  Q  N  I  H  *  G  V  C  G  C  G  C  K  *  Y  C  W  R  T  A  K  D  S  S  K  A  A  H  L  N  Y  I  C  T  W  H  Y  D  *  Y  F  V  L  L  L  D  G  P  S  H  S  Y  H  M  L  P  N  F  Q  Y  L  M  L  T  T  T  T  T  S  P  I  P  P  A  G  W  L  V  S  R  I  D  H  N  F  I  N  I  *  S  K  F  C  W  F  W  V  C  E  G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G  G  I  F  P  Q  L  L  S  N  S  Q  L  E  S  L  S  S  I  F  L  A  R  F  L  S  R  R  T  F  T  E  G  C  V  G  V  G  V  S  S  T  A  G  E  L  L  K  T  V  V  K  Q  P  I  S  I  I  S  V  L  G  I  M  T  S  I  L  S  C  S  L  M  D  L  V  I  H  I  T  C  Y  L  I  F  S  T  S  C  S  L  L  L  L  L  P  Q  S  P  L  Q  V  G  S  S  V  G  *  I  T  I  L  *  I  F  K  V  N  F  V  G  F  G  Y  V  K  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101834" stop="101740"/>
                    <exon start="101071" stop="100924"/>
                    <exon start="100841" stop="100722"/>
                    <exon start="100621" stop="100578"/>
                    <exon start="100492" stop="100367"/>
                    <exon start="100045" stop="99847"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVYFHSFYPIANWRVCLLFFLLVSFLAEHSLRGVWVWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99578" stop="99530"/>
                    <exon start="99437" stop="99268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASATLIKYIRRPTFCAKWQVPVERWPTSREFHTSFSSCFKCHSIVHLQLHLRVFLPLVKLYAHWIDTGDSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="103577" PGL_stop="108428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103577" e_stop="103689"/>
            <exon e_start="103808" e_stop="104071"/>
            <exon e_start="104796" e_stop="104989"/>
            <exon e_start="105075" e_stop="105122"/>
            <exon e_start="105400" e_stop="105472"/>
            <exon e_start="105689" e_stop="105860"/>
            <exon e_start="107377" e_stop="107808"/>
            <exon e_start="107895" e_stop="108086"/>
            <exon e_start="108202" e_stop="108428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103577" e_stop="103689" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.978">
            <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104071" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104796" e_stop="104989" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105075" e_stop="105122" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105400" e_stop="105472" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105689" e_stop="105860" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107377" e_stop="107808" e_length="432"/>
          </exon>
          <intron i_serial="7" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107895" e_stop="108086" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="108202" e_stop="108428" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103577" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103577" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103585" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103609" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103610" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103822" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104875" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104875" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107437" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107585" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107673" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107955" stop="108086"/>
              <exon start="108202" stop="108419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284803" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC : TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</gDNA_template>
            <first_frame> R  N  W  Q  S  C  P  P  S  I  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S :   E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  *   </first_frame>
            <second_frame>  G  I  G  S  P  V  L  P  P  S  N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H   : L  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I  N  </second_frame>
            <third_frame>   E  L  A  V  L  S  S  L  H  P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  :  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103578" stop="103689"/>
                    <exon start="103808" stop="104071"/>
                    <exon start="104796" stop="104989"/>
                    <exon start="105075" stop="105122"/>
                    <exon start="105400" stop="105472"/>
                    <exon start="105689" stop="105860"/>
                    <exon start="107377" stop="107808"/>
                    <exon start="107895" stop="108086"/>
                    <exon start="108202" stop="108238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIGSPVLPPSNFFGAQTATLDSSNFPDKITSIVSRFHLRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103606" e_stop="104071"/>
            <exon e_start="104796" e_stop="104989"/>
            <exon e_start="105075" e_stop="105122"/>
            <exon e_start="105400" e_stop="105472"/>
            <exon e_start="105689" e_stop="105860"/>
            <exon e_start="107377" e_stop="107808"/>
            <exon e_start="107895" e_stop="108086"/>
            <exon e_start="108202" e_stop="108428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.938"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="103606" e_stop="104071" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104796" e_stop="104989" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105075" e_stop="105122" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105400" e_stop="105472" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105689" e_stop="105860" e_length="172"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107377" e_stop="107808" e_length="432"/>
          </exon>
          <intron i_serial="6" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107895" e_stop="108086" e_length="192"/>
          </exon>
          <intron i_serial="7" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108202" e_stop="108428" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103606" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103606" stop="103993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103822" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104875" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104875" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107437" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107585" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107672" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107673" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107955" stop="108086"/>
              <exon start="108202" stop="108419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284803" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</gDNA_template>
            <first_frame> P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  V  S  F  S  L  L  T  F  I  F  *  S  Q  S  *  G  L  G  F  K  N  S  S  *  R  S  *  F  F  F  V  I  Y  G  S  F  L  L  I  V  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I  N  </first_frame>
            <second_frame>  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S  *  V  F  H  C  L  H  L  F  F  R  V  K  V  R  D  L  G  S  K  T  V  V  K  D  H  S  F  F  L  *  F  M  V  H  F  C  *  *  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  I </second_frame>
            <third_frame>   N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H  R  K  F  F  T  A  Y  I  Y  F  L  E  S  K  L  G  T  W  V  Q  K  Q  *  L  K  I  I  V  F  F  C  N  L  W  F  I  F  V  D  S  E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103771" stop="104071"/>
                    <exon start="104796" stop="104989"/>
                    <exon start="105075" stop="105122"/>
                    <exon start="105400" stop="105472"/>
                    <exon start="105689" stop="105860"/>
                    <exon start="107377" stop="107808"/>
                    <exon start="107895" stop="108086"/>
                    <exon start="108202" stop="108238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVIYGSFLLIVRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="113302" PGL_stop="108492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113302" e_stop="113044"/>
            <exon e_start="110483" e_stop="110405"/>
            <exon e_start="109665" e_stop="109601"/>
            <exon e_start="109437" e_stop="109338"/>
            <exon e_start="109258" e_stop="109217"/>
            <exon e_start="109088" e_stop="109047"/>
            <exon e_start="108960" e_stop="108854"/>
            <exon e_start="108738" e_stop="108492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113302" e_stop="113044" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.971">
            <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110483" e_stop="110405" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109665" e_stop="109601" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109437" e_stop="109338" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109258" e_stop="109217" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109088" e_stop="109047" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="109046" i_stop="108961" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108960" e_stop="108854" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108853" i_stop="108739" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108738" e_stop="108492" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113302" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109047"/>
              <exon start="108960" stop="108854"/>
              <exon start="108738" stop="108492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113302" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109047"/>
              <exon start="108960" stop="108895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113302" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109047"/>
              <exon start="108960" stop="108952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113301" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG : TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG : CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG : GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</gDNA_template>
            <first_frame> S  L  S  M  L  G  S  L  Y  D  L  I  V  R  L  I  *  I  R  I  K  D  R  G  W  E  E  V  G  *  S  *  N  G  S  R  T  K  *  A  D  K  *  H  S  Q  R  D  D  L  D  Y  *  R  K  L  M  R  S  Q  Y  Y  V  M  L  M  L  H  *  L  C  F  L  P  K  A  N  F  S  S  I  P  Q  M  T  Q   : V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T  *  L  L  R  S :   *  K  K  M  R  R  H  N  P  T  H  Q  A  K  T  Q  Q  Q  F  M  C  F  H  H  I  L  T  T  N  F  L  T  L  Q  L   : G  G  L  L  E  E  *  T  E  M  D  R  V  R  L  I  T  I  R  V  Q  I  T  I  I  I  I  P  H  *  Y  R  H  G  C  S  A  T  S  A  T  K  D  E  I  I  F  R  R  V  *  L  I  N  C  I  C  F  V  P  N  N  I  N  Q  L  S  C  L  *  C  I  I  S  L  S  *  *  N  F  S  S   </first_frame>
            <second_frame>  L  Y  L  C  *  V  A  Y  M  I  *  *  F  D  *  F  K  Y  A  L  K  I  E  D  G  K  R  *  G  R  V  E  T  D  R  E  Q  N  K  Q  T  S  N  I  L  K  E  T  I  W  I  I  E  E  S  *  *  D  L  S  I  M  *  C  *  C  C  I  D  C  V  F  Y  Q  R  Q  T  F  R  V  F  L  K  *  L  K  :  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  D  Y  *  E   : A  K  R  K  *  E  D  T  T  Q  L  I  R  P  K  L  S  N  S  S  C  V  S  I  T  F  S  P  P  T  S  *  P  Y  N  W  :  G  G  F  W  R  N  E  Q  R  W  I  G  S  G  S  S  L  S  G  F  K  *  Q  *  *  *  F  L  I  D  T  A  M  D  A  P  P  R  Q  Q  R  R  M  K  *  Y  S  G  E  Y  N  *  L  I  V  Y  V  L  F  Q  T  I  L  I  N  F  P  V  C  D  V  *  L  A  *  A  N  K  T  F  H  P  </second_frame>
            <third_frame>   S  I  Y  A  R  *  L  I  *  F  N  S  S  I  N  L  N  T  H  *  R  *  R  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  S  R  Q  V  T  F  S  K  R  R  S  G  L  L  K  K  A  N  E  I  S  V  L  C  D  A  D  V  A  L  I  V  F  S  T  K  G  K  L  F  E  Y  S  S  N  D  S  S :   M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L  I  T  K  K  :  L  K  E  N  E  K  T  Q  P  N  S  S  G  Q  N  S  A  T  V  H  V  F  P  S  H  S  H  H  Q  L  P  N  L  T  I  G :   G  A  F  G  G  M  N  R  D  G  S  G  Q  A  H  H  Y  P  G  S  N  N  N  N  N  N  S  S  L  I  P  P  W  M  L  R  H  V  S  N  E  G  *  N  N  I  P  E  S  I  I  N  *  L  Y  M  F  C  S  K  Q  Y  *  S  T  F  L  F  V  M  Y  N  *  L  K  L  I  K  L  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113234" stop="113044"/>
                    <exon start="110483" stop="110405"/>
                    <exon start="109665" stop="109601"/>
                    <exon start="109437" stop="109338"/>
                    <exon start="109258" stop="109217"/>
                    <exon start="109088" stop="109047"/>
                    <exon start="108960" stop="108854"/>
                    <exon start="108738" stop="108609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGRGRVELKRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSSNDSSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNLITKKLKENEKTQPNSSGQNSATVHVFPSHSHHQLPNLTIGGAFGGMNRDGSGQAHHYPGSNNNNNNSSLIPPWMLRHVSNEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110997" e_stop="110405"/>
            <exon e_start="109665" e_stop="109601"/>
            <exon e_start="109437" e_stop="109338"/>
            <exon e_start="109258" e_stop="109217"/>
            <exon e_start="109088" e_stop="109059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.997"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="110997" e_stop="110405" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109665" e_stop="109601" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109437" e_stop="109338" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109258" e_stop="109217" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109088" e_stop="109059" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110997" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110996" stop="110522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTG</gDNA_template>
            <first_frame> G  K  Q  D  D  V  *  L  R  T  Y  L  Q  P  F  T  T  I  S  I  S  S  Y  L  R  S  Y  S  V  N  S  C  M  C  V  *  L  I  T  L  I  Q  Y  F  F  S  L  P  L  P  L  F  K  P  T  I  V  D  F  S  H  V  L  T  W  A  F  A  H  L  Y  V  T  D  S  I  I  S  A  S  L  L  S  S  *  P  P  W  M  P  L  *  *  I  D  L  S  L  S  F  *  I  D  I  P  D  L  I  K  M  Q  K  T  S  H  S  K  I  T  *  L  E  S  Y  L  S  N  I  V  Y  Q  W  K  N  Y  Q  L  *  M  K  K  *  N  K  I  L  Y  Y  *  V  M  *  L  S  S  I  C  L  L  A  Y  N  F  F  F  V  Y  F  L  I  L  V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T   </first_frame>
            <second_frame>  E  S  K  M  M  F  N  Y  V  L  T  F  N  P  L  P  R  S  R  Y  P  P  I  *  D  H  I  P  *  I  H  A  C  V  S  N  *  S  P  L  S  N  I  F  L  V  Y  L  Y  P  S  L  N  P  P  L  S  I  S  H  T  F  S  L  G  H  L  H  I  S  T  S  Q  T  Q  S  S  Q  L  R  F  S  H  L  S  H  H  G  C  H  S  N  K  *  I  Y  L  F  H  F  E  L  I  Y  L  T  *  L  K  C  K  K  L  L  I  L  K  *  P  S  *  N  P  I  *  V  I  L  Y  I  N  G  K  I  T  N  C  K  *  K  N  K  I  K  F  Y  T  I  R  S  C  S  *  V  Q  Y  A  Y  W  L  I  I  F  F  L  F  I  F  *  F  *  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  </second_frame>
            <third_frame>   K  A  R  *  C  L  T  T  Y  L  P  S  T  L  Y  H  D  L  D  I  L  L  S  K  I  I  F  R  K  F  M  H  V  C  L  I  N  H  P  Y  P  I  F  F  *  S  T  S  T  P  L  *  T  H  H  C  R  F  L  T  R  S  H  L  G  I  C  T  S  L  R  H  R  L  N  H  L  S  F  A  S  L  I  L  A  T  M  D  A  T  L  I  N  R  S  I  S  F  I  L  N  *  Y  T  *  P  D  *  N  A  K  N  F  S  F  *  N  N  L  V  R  I  L  F  K  *  Y  C  I  S  M  E  K  L  P  T  V  N  E  K  I  K  *  N  F  I  L  L  G  H  V  V  K  F  N  M  L  T  G  L  *  F  F  F  C  L  F  F  D  F  S  M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110512" stop="110405"/>
                    <exon start="109665" stop="109601"/>
                    <exon start="109437" stop="109338"/>
                    <exon start="109258" stop="109217"/>
                    <exon start="109088" stop="109059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFCLFFDFSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="127193" PGL_stop="122634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127193" e_stop="126672"/>
            <exon e_start="125203" e_stop="125125"/>
            <exon e_start="124886" e_stop="124822"/>
            <exon e_start="123957" e_stop="123858"/>
            <exon e_start="123779" e_stop="123738"/>
            <exon e_start="123659" e_stop="123618"/>
            <exon e_start="123317" e_stop="123178"/>
            <exon e_start="122959" e_stop="122634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="127193" e_stop="126672" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125203" e_stop="125125" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124822" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123957" e_stop="123858" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123779" e_stop="123738" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123659" e_stop="123618" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300"/>
          </intron>
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              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125153" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125153" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123879" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123208" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123208" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122908" stop="122634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I   </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F  </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126886" stop="126672"/>
                    <exon start="125203" stop="125125"/>
                    <exon start="124886" stop="124822"/>
                    <exon start="123957" stop="123858"/>
                    <exon start="123779" stop="123738"/>
                    <exon start="123659" stop="123618"/>
                    <exon start="123317" stop="123178"/>
                    <exon start="122959" stop="122872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127193" e_stop="126672"/>
            <exon e_start="125203" e_stop="125125"/>
            <exon e_start="124886" e_stop="124822"/>
            <exon e_start="123957" e_stop="123858"/>
            <exon e_start="123779" e_stop="123738"/>
            <exon e_start="123659" e_stop="123618"/>
            <exon e_start="123320" e_stop="123178"/>
            <exon e_start="122959" e_stop="122634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="127193" e_stop="126672" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125203" e_stop="125125" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124822" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123957" e_stop="123858" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123779" e_stop="123738" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123659" e_stop="123618" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.885">
            <gDNA_intron_boundary i_start="123617" i_stop="123321" i_length="297"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123320" e_stop="123178" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122959" e_stop="122634" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127193" stop="126872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127189" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126672"/>
              <exon start="125203" stop="125186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127153" stop="126672"/>
              <exon start="125203" stop="125167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127125" stop="126854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127124" stop="126706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127122" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123320" stop="123230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127122" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127115" stop="126672"/>
              <exon start="125203" stop="125184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127115" stop="126751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127113" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127113" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127095" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127095" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127093" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127093" stop="126740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127092" stop="126864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127086" stop="126843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127078" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127045" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127040" stop="126672"/>
              <exon start="125203" stop="125144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127040" stop="126672"/>
              <exon start="125203" stop="125177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127039" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127038" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127029" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123320" stop="123251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127029" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123320" stop="123263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126988" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126982" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123320" stop="123178"/>
              <exon start="122959" stop="122888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126978" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126970" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126969" stop="126700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126961" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126956" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126955" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126955" stop="126672"/>
              <exon start="125203" stop="125170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126917" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126917" stop="126761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126911" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126885" stop="126726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126844" stop="126672"/>
              <exon start="125203" stop="125148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126842" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124881" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123320" stop="123178"/>
              <exon start="122959" stop="122729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123208" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123208" stop="123178"/>
              <exon start="122959" stop="122639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122908" stop="122634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : A  D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I   </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  Q  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F  </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  S :   R  W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126886" stop="126672"/>
                    <exon start="125203" stop="125125"/>
                    <exon start="124886" stop="124822"/>
                    <exon start="123957" stop="123858"/>
                    <exon start="123779" stop="123738"/>
                    <exon start="123659" stop="123618"/>
                    <exon start="123320" stop="123178"/>
                    <exon start="122959" stop="122872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKQMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="127193" e_stop="126672"/>
            <exon e_start="125203" e_stop="125125"/>
            <exon e_start="124886" e_stop="124822"/>
            <exon e_start="123957" e_stop="123858"/>
            <exon e_start="123779" e_stop="123738"/>
            <exon e_start="123659" e_stop="123618"/>
            <exon e_start="123317" e_stop="123066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="127193" e_stop="126672" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125203" e_stop="125125" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124822" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123957" e_stop="123858" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123779" e_stop="123738" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123659" e_stop="123618" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="123317" e_stop="123066" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127193" stop="126872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127189" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127185" stop="126899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126672"/>
              <exon start="125203" stop="125186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127154" stop="126758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127153" stop="126672"/>
              <exon start="125203" stop="125167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127125" stop="126854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127124" stop="126706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127122" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127115" stop="126672"/>
              <exon start="125203" stop="125184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127115" stop="126751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127113" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127113" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127096" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127096" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127095" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127095" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127093" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127093" stop="126740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127092" stop="126864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127087" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127086" stop="126843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127078" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127045" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127040" stop="126672"/>
              <exon start="125203" stop="125144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127040" stop="126672"/>
              <exon start="125203" stop="125177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127039" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127038" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126988" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126978" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126970" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126969" stop="126700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126968" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126961" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126956" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126955" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126955" stop="126672"/>
              <exon start="125203" stop="125170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126917" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126917" stop="126761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126911" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126885" stop="126726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126844" stop="126672"/>
              <exon start="125203" stop="125148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126842" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126842" stop="126672"/>
              <exon start="125203" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125153" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124883" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123262" stop="123066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  V  N  S  T  I  F  I  L  Y  I  S  *  F  L  I  Y  P  I  Y  F  T  S  A  H  *  F  T  S  E  I  F  *  K  K  K  G  R  </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G  *  I  L  P  Y  S  F  Y  I  Y  L  N  F  *  F  I  L  S  I  L  H  L  P  I  S  S  Q  V  R  F  F  E  K  K  K  E  E </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L  G  K  F  Y  H  I  H  S  I  Y  I  L  I  F  N  L  S  Y  L  F  Y  I  C  P  L  V  H  K  *  D  F  L  K  K  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126886" stop="126672"/>
                    <exon start="125203" stop="125125"/>
                    <exon start="124886" stop="124822"/>
                    <exon start="123957" stop="123858"/>
                    <exon start="123779" stop="123738"/>
                    <exon start="123659" stop="123618"/>
                    <exon start="123317" stop="123174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 337 chains have been computed
$ 
$ memory statistics:
$ 597120 bytes spliced alignments in total
$ 258 spliced alignments have been stored
$ 2314 bytes was the average size of a spliced alignment
$ 33552 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1864 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 362 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:36:22
-->
