<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:36:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="47400" stop="46476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47101" g_stop="46776" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47101" e_stop="46776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCTAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTCCAACTATCACAGTCTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="+" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="46498" stop="47737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46798" g_stop="47437" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46798" e_stop="47437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGACTGTGATAGTTGGAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTACATATTATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACGCCTCAGAGATTATACTACTCAAGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAAACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGTCTGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585381" ref_strand="+" ref_description="SGN-U585381 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|15234491|ref|NP_195385.1| (e_value=4e-54) mannitol transporter, putative [Arabidopsis thaliana]; (*ATH) AT4G36670.1 (e_value=3e-56)  Symbol: None | mannitol transporter, putative, similar to mannitol transporter (Apium graveolens var. dulce) GI:12004316; contains Pfam profile PF00083: major facilitator superfamily protein | chr4:17287503-17289594 REVERSE | Aliases: AP22.86, AP22_... ; (*SWP) sp|Q8GXR2|PLT6_ARATH (e_value=3e-55) Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6; ">
      <seq>gcccataagcaccaaatcctttgctacagttggtgtgggattaactaagctcacattcatactgttatcgactatcttgattgacagagttggcaggagaaagctcttgttgacgagtttaagtggtatggttgtgacgttaacaggacttggggttttcttgactttggcagagcactccggtggcaaactcatatgggctttggttcttagcataattacaacttatggagttgtgatgtttttcaacattgggcttggtcctgttacttgggtatataccgctgagattttccctcttaagtttaggggtttaggagttggaattggtgtcgcggttaacaggttgatgaatgcaacagtttctatgagttttctgtcaatttctgcagcaattacgactggtggtgctttcttcatgtttgctgggatatcagtcatcgctttgatctttttctactttttcttgcctgagactaaaggaaagtctttggaagaaatggaagctcttttcactagaggaggcacatgttctaaccatgttagcaaacaagtggagattgcaaaatattgattcttgatcaacttttgtgtagaaaaatatgccctttttactgttgagataaatttttgtaatcaatccagttatgtattattagttataaacattaaattacaccttcttgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="60575" stop="59286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60275" g_stop="59591" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U585381" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60275" e_stop="59591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATAAGCACCAAATCC-TTGCTACAGTTGGTGTTGGATTAACTAAGCTCACATTCATACTGTTATCGACTATCTTGATTGACAGAGTTGGCAGGAGAAAGCTCTTGTTGACGAGTTTAAGTGGTATGGTTGTGACGTTAACAGGACTTGGGGTTTTCTTGACTTTGGCAGAGCACTCCGGTGGCAAACTCATATGGGCTTTGGTTCTTAGCATAATTACAACTTATGGAGTTGTGATGTTTTTCAACATTGGGCTTGGTCCTGTTACTTGGGTATATACCGCTGAGATTTTCCCTCTTAAGTTTAGGGGTTTAGGAGTTGGAATTGGTGTCGCGGTTAACAGGTTGATGAATGCAACAGTTTCTATGAGTTTTCTGTCAATTTCTGCAGCAATTACGACTGGTGGTGCTTTCTTCATGTTTGCTGGGATATCAGTCATCGCTTTGATCTTTTTCTACTTTTTCTTGCCTGAGACTAAAGGAAAGTCTTTGGAAGAAATGGAAGCTCTTTTCACTAGAGGAGGCACATGTTCTAACCATGTTAGCAAACAAGTGGAGATTGCAAAATATTGATTCTTGATCAACTTTTGTGTAGAAAAATATGCCCTTTTTACTGTTGAGATAAATTTTTGTAATCAATCCAGTTATGTATTATTAGTTATAAACATTAAATTACACCTTCTTG</genome_strand>
        <mrna_strand>GCCCATAAGCACCAAATCCTTTGCTACAGTTGGTGTGGGATTAACTAAGCTCACATTCATACTGTTATCGACTATCTTGATTGACAGAGTTGGCAGGAGAAAGCTCTTGTTGACGAGTTTAAGTGGTATGGTTGTGACGTTAACAGGACTTGGGGTTTTCTTGACTTTGGCAGAGCACTCCGGTGGCAAACTCATATGGGCTTTGGTTCTTAGCATAATTACAACTTATGGAGTTGTGATGTTTTTCAACATTGGGCTTGGTCCTGTTACTTGGGTATATACCGCTGAGATTTTCCCTCTTAAGTTTAGGGGTTTAGGAGTTGGAATTGGTGTCGCGGTTAACAGGTTGATGAATGCAACAGTTTCTATGAGTTTTCTGTCAATTTCTGCAGCAATTACGACTGGTGGTGCTTTCTTCATGTTTGCTGGGATATCAGTCATCGCTTTGATCTTTTTCTACTTTTTCTTGCCTGAGACTAAAGGAAAGTCTTTGGAAGAAATGGAAGCTCTTTTCACTAGAGGAGGCACATGTTCTAACCATGTTAGCAAACAAGTGGAGATTGCAAAATATTGATTCTTGATCAACTTTTGTGTAGAAAAATATGCCCTTTTTACTGTTGAGATAAATTTTTGTAATCAATCCAGTTATGTATTATTAGTTATAAACATTAAATTACACCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586228" ref_strand="+" ref_description="SGN-U586228 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggattcgtaagtgtagtgcatgctctaaactagaaattatcacaaattaatttagtttactactaaaaatatacatacattgttcatacaattgaattatggagaaggctactgctggaaaaaatcgaacaaggattaataaatatgcctgtgcttgtgctattgttgcttccatgatatctatcatcttcggttatggtaagttttttacttctaaaattcttctgtttcttttccttttattatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatacagatatcgaagtcatcatgtagcccgattaatctatcatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatatagatattgaagtcatcatgtagcccgattaatctatcatcgcatttgcttttcttaaatagactgattaatctatcatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatacagatatcgaagtcatcaggtagcccgattaatctatcatcacatttgcttttcttaaatagcgcgattaatctatcatcgcatttgcttttcttaaatagactaatgataattttatgtttgaattcagataccggagtgatgagtggagcgatgatttttgtgaaaaaggaattcaaaatcagtgatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="62206" stop="60740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61907" g_stop="61591" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61590" i_stop="61425" i_length="166">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61424" g_stop="61040" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="702" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U586228" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61907" e_stop="61591"/>
          <exon e_start="61424" e_stop="61040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTAAGTGTAGTGCATGCTCTAAACTAGAAATTATCACAAATTAATTTAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAGCCCGATTAATCTATCATTGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGGATATAGATATTGAAGTCATCATGTAGCCCTATTAATCTATCATCGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTGAATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTTGTGAAAAAGGAATTCAAAATCAGTGATGCAA</genome_strand>
        <mrna_strand>GGATTCGTAAGTGTAGTGCATGCTCTAAACTAGAAATTATCACAAATTAATTTAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAG......................................................................................................................................................................CCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTGAATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTTGTGAAAAAGGAATTCAAAATCAGTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586229" ref_strand="+" ref_description="SGN-U586229 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gagtttactactaaaaatatacatacattgttcatacaattgaattatggagaaggctactgctggaaaaaatcgaacaaggattaataaatatgcctgtgcttgtgctattgttgcttccatgatatctatcatcttcggttatggtaagttttttacttctaaaattcttctgtttcttttccttttattatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatacagatatcgaagtcatcatgtagcccgattaatctatcattgcatttgcttttcttaaatagcccgattaatctatcatcgcatttgcttttcttaaatagactaatgagaagtttatgtttggatatagatattgaagtcatcatgtagccctattaatctatcatcgcatttgcttttcttaaatagcccgattaatctatcatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatatagatattgaagtcatcatgtagcccgattaatctatcatcacatttgcttttcttaaatagactgattaatctatcatcgcatttgcttttcttaaatagactaatgagaagtttatgtttgaatacagatatcgaagtcatcaggtagcccgattaatctatcatcacatttgcttttcttaaatagcgcgattaatctatcatcgcatttgcttttcttaaatagactaatgataattttatgtttgattcagataccggagtgatgagtggagcgatgattttttgtgaaaaggattcaaatcagtgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="62154" stop="60741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61855" g_stop="61041" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U586229" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61855" e_stop="61041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAGCCCGATTAATCTATCATTGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGGATATAGATATTGAAGTCATCATGTAGCCCTATTAATCTATCATCGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTGAATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTTGTGAAAAAGGAATTCAAAATCAGTGATGCA</genome_strand>
        <mrna_strand>GAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAGCCCGATTAATCTATCATTGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGGATATAGATATTGAAGTCATCATGTAGCCCTATTAATCTATCATCGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTG-ATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTT-TGTGAAAAGGATTC-AAATCAGTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581900" ref_strand="+" ref_description="SGN-U581900 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|156070779|gb|ABU45192.1| (e_value=3e-158) unknown; (*ATH) AT4G36680.1 (e_value=4e-120)  Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to fertility restorer (Petunia x hybrida) GI:22128587; contains Pfam profile PF01535: PPR repeat; identical to cDNA membrane-associated salt-inducible protein like GI:2... ; (*SWP) sp|Q8LE47|PPR87_ARATH (e_value=5e-44) Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336; ">
      <seq>acccaattaagtggatttgtaacaaagagaaaaatttgaaaaaagatattacttattttttaactcactctaaatgcttcaagattctcattttctcataataaaccccagcaaccttccgccgtcctaaaacctttcactgtttacccaaaaccggctaaaaccctaatgtcttcttccatttccctgcgcctggcgcgccacctctcaacctcggccgccgccgccgccaccaccgccaccgccgctgcttcttcaatagccggcgcgaccatctctatctccaaagcaaaatccaagctaaagtctgagcacgatccagacaaagcactaaagatttactcctctgtttctaaccattacacttcccctttatcctcccgttatgcacaagaatacacagtcaaacgcctcgctaaatcccatcgtttctccgacatcgaagcctttctcgagtctcacaaggatgacaaaaaaattacccaggaacccttcctttcctctattattcgttcgtacggattagctggaatgtttgatcaggcgcttaaaacttatcttcaaatggacgatttaggtacccctagatcagcagtttcgttcaacgtgcttctttcagcttgtgtgaactccaaattttatgatcgcgttccccagctgtttgatgaaatgccaaagaagcatggattcttacctgacaaagtttcatatggtgtattgatcaggtcttactgtgaaatggggaagcctgaattggcaatggagaaacttaaggaaatggaagagaaaggtgttgaaattacagctgttactttcacaaccatattgaactcattgtacaagggaggaaggtgtgatgaggctgaaaaggtttggaatgagatggcgaagagaagttgcgggcccgatgttggtgcttacaatgtaaagattatgaactttcagggtggtgatcctgaaggagtgaaggttttgattgaggaaatgagcaatgtaggcttaaaacccgacacgatcagttacaattacttgatgtcttgttactgtaggaatgggatgatggatgaagctgagaaagtttatgaggatttggagacaaaggggtgcaatccaaatgcttcaacttttagaactttgatattctatttgtgtaagaatgaacagttcgagacggggtataaagtgttcagagaaagtgtgagagcaaacaagattccggatgtcaatacactcaagtacttggttcatggtttggcgaagagttcaaaggcgaaagaagcaaaagaaatgatcaggacaatgaagaagaagttccctgctaatgtggtgaaagtttggaccaagatagaggaggagcttggtttggctaaagtcgaactcggtgatatcaagtctaatgagagtaatgttgcgcagtaatgattttgttcgagatatagctgctgtaagcaatctagccagctttataactgttgaggaagattgaatttttttgtttgtcataaagatgtgagttagcacttggcgctaacatttgttgtgccatttatttttgaaagctaatatagatcgtttacttggaagttttgtagtgctttttgaagatctgcaaatgttcaattctacgggataaatattttgttgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="73952" stop="71708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73652" g_stop="72009" g_length="1644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1649" r_length="1649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U581900" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1644</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73652" e_stop="72009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTAAGTGGATTTGTAACAAAGAGAAAAATTTGAAAAAAGATATTACTTATTTTTTAACTCACTCTAAATGCTTCAAGATTCTCATTTTCTC---ATAAA-CCCAGCAACCTTCCGCCGTCCTAAAACCTTTCATTGTTTACCCAAAACCGGCTAAAACCCTAATGTCTTCTTCCATTTCCCTGCGCCTGGCGCGCCACCTCTCAACCTCGGCCGACGCCGCCGCCACCACCGCCACCGCCGCTGCTTCTTCAATAGCCGGCGCGACCATCTCTATCTCCAAAGCAAAATCCAAGCTAAAGTCTGAGCACGATCCAGACAAAGCACTAAAGATTTACTCCTCTGTTTCTAACCATTACACTTCCCCTTTATCCTCCCGTTATGCACAAGAATACACAGTCAAACGCCTCGCTAAATCCCATCGTTTCTCCGACATCGAAGCCTTTCTCGAGTCTCACAAGGATGACAAAAAAATTACCCAGGAACCCTTCCTTTCCTCTATTATTCGTTCGTACGGATTAGCTGGAATGTTTGATCAGGCGCTTAAAACTTATCTTCAAATGGACGATTTAGGTACCCCTAGATCAGCAGTTTCGTTCAACGTGCTTCTTTCAGCTTGTGTGAACTCCAAATTTTATGATCGCGTTCCCCAGCTGTTTGATGAAATGCCAAAGAAGCATGGATTCTTACCTGACAAAGTTTCATATGGTGTATTGATCAGGTCTTACTGTGAAATGGGGAAGCCTGAATTGGCAATGGAGAAACTTAAGGAAATGGAAGAGAAAGGTGTTGAAATTACAGCTGTTACTTTCACAACCATATTGAACTCATTGTACAAGGGAGGAAGGTGTGATGAGGCTGAGAAGGTTTGGAATGAGATGGCGAAGAGAGGTTGCGGTCCGGATGTTGGTGCTTACAATGTAAAGATTATGAACTTTCAGGGTGGTGATCCTGAAGGAGTGAAGGTTTTGATTGAGGAAATGAGCAATGTAGGCTTAAAACCCGACACGATCAGTTACAATTACTTGATGTCTTGTTACTGTAGGAATGGGATGATGGATGAAGCTGAGAAAGTTTATGAGGATTTGGAGACAAAGGGGTGCAATCCAAATGCTTCAACTTTTAGAACTTTGATATTCTATTTGTGTAAGAATGAACAGTTCGAGACGGGGTATAAAGTGTTCAGAGAAAGTGTGAGAGCAAACAAGATTCCGGATGTCAATACACTCAAGTACTTGGTTCATGGTTTGGCGAAGAGTTCAAAGGCGAAAGAAGCAAAAGAAATGATCAGGACAATGAAGAAGAAGTTCCCTGCTAATGTGGTGAAAGTTTGGACCAAGATAGAGGAGGAGCTTGGTTTGGCTAAAGTCGAACTCGGTGATATCAAGTCTAATGAGAGTAATGTTGCGCAGTAATGATTTTGTTCGAGATATAGCTGCTGTAAGCAATCTAGCCAGCTTTATAACTGTTGAGGAAGATTGAATTTTTTTGTTTGTCATAAAGATGTGAGTTAGCACTTGGCGCTAACATTTGTTGTGCCATTTATTTTTGAAAGCTAATATAGATCGTTTACTTGGAAGTTTTGTAGTGC-TTTTGAAGATCTGCAAATGTTCAATTCTACGGGATAAATATTTTGTTGCTTCA</genome_strand>
        <mrna_strand>ACCCAATTAAGTGGATTTGTAACAAAGAGAAAAATTTGAAAAAAGATATTACTTATTTTTTAACTCACTCTAAATGCTTCAAGATTCTCATTTTCTCATAATAAACCCCAGCAACCTTCCGCCGTCCTAAAACCTTTCACTGTTTACCCAAAACCGGCTAAAACCCTAATGTCTTCTTCCATTTCCCTGCGCCTGGCGCGCCACCTCTCAACCTCGGCCGCCGCCGCCGCCACCACCGCCACCGCCGCTGCTTCTTCAATAGCCGGCGCGACCATCTCTATCTCCAAAGCAAAATCCAAGCTAAAGTCTGAGCACGATCCAGACAAAGCACTAAAGATTTACTCCTCTGTTTCTAACCATTACACTTCCCCTTTATCCTCCCGTTATGCACAAGAATACACAGTCAAACGCCTCGCTAAATCCCATCGTTTCTCCGACATCGAAGCCTTTCTCGAGTCTCACAAGGATGACAAAAAAATTACCCAGGAACCCTTCCTTTCCTCTATTATTCGTTCGTACGGATTAGCTGGAATGTTTGATCAGGCGCTTAAAACTTATCTTCAAATGGACGATTTAGGTACCCCTAGATCAGCAGTTTCGTTCAACGTGCTTCTTTCAGCTTGTGTGAACTCCAAATTTTATGATCGCGTTCCCCAGCTGTTTGATGAAATGCCAAAGAAGCATGGATTCTTACCTGACAAAGTTTCATATGGTGTATTGATCAGGTCTTACTGTGAAATGGGGAAGCCTGAATTGGCAATGGAGAAACTTAAGGAAATGGAAGAGAAAGGTGTTGAAATTACAGCTGTTACTTTCACAACCATATTGAACTCATTGTACAAGGGAGGAAGGTGTGATGAGGCTGAAAAGGTTTGGAATGAGATGGCGAAGAGAAGTTGCGGGCCCGATGTTGGTGCTTACAATGTAAAGATTATGAACTTTCAGGGTGGTGATCCTGAAGGAGTGAAGGTTTTGATTGAGGAAATGAGCAATGTAGGCTTAAAACCCGACACGATCAGTTACAATTACTTGATGTCTTGTTACTGTAGGAATGGGATGATGGATGAAGCTGAGAAAGTTTATGAGGATTTGGAGACAAAGGGGTGCAATCCAAATGCTTCAACTTTTAGAACTTTGATATTCTATTTGTGTAAGAATGAACAGTTCGAGACGGGGTATAAAGTGTTCAGAGAAAGTGTGAGAGCAAACAAGATTCCGGATGTCAATACACTCAAGTACTTGGTTCATGGTTTGGCGAAGAGTTCAAAGGCGAAAGAAGCAAAAGAAATGATCAGGACAATGAAGAAGAAGTTCCCTGCTAATGTGGTGAAAGTTTGGACCAAGATAGAGGAGGAGCTTGGTTTGGCTAAAGTCGAACTCGGTGATATCAAGTCTAATGAGAGTAATGTTGCGCAGTAATGATTTTGTTCGAGATATAGCTGCTGTAAGCAATCTAGCCAGCTTTATAACTGTTGAGGAAGATTGAATTTTTTTGTTTGTCATAAAGATGTGAGTTAGCACTTGGCGCTAACATTTGTTGTGCCATTTATTTTTGAAAGCTAATATAGATCGTTTACTTGGAAGTTTTGTAGTGCTTTTTGAAGATCTGCAAATGTTCAATTCTACGGGATAAATATTTTGTTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="-" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="78557" stop="77319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78257" g_stop="77618" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="-" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78257" e_stop="77618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCTAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCATGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCTTTCCCGATAGTGAACCAACAACCTACTCCGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTATAATCAGGAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCCGGTACTATCACTCGCCGTGCGCAACAATTGGCTCATTAATCAGTTGGATGTTTCCAATGCTTTTCTCCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGTTATGTTGATATCCC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567083" ref_strand="+" ref_description="SGN-U567083 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|75338884|sp|Q9ZR40|U2A2B_NICPL (e_value=0) RecName:; (*ATH) AT4G36690.1 (e_value=0) | Symbol: ATU2AF65A | U2 snRNP auxiliary factor large subunit, putative, similar to U2 snRNP auxiliary factor, large subunit (Nicotiana plumbaginifolia) GI:3850823 | chr4:17294019-17297725 REVERSE | Aliases: AP22.29, AP22_29, ATU2AF65A; (*SWP) sp|P26369|U2AF2_MOUSE (e_value=1e-73) Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2; ">
      <seq>aattaaaaaaataaaatttagttacgtttgtactaaacaatctctctcacccaacttggagccctagtttatgtgttctgaactccgaactccatcaacaacgcagaggatcgaacaaggcgaagcaaagcacaattcagtagaaagctatcttcactgagagttacagaagccctagccatgccggactatgaagccaatggagaagacatagacaattccggctcttctccccttcccaaatccagaagtagccatggcggcactaatcccgataatttcaccgactccaagcctcagcatagttctcgtgaatatgaaaaagataagagctcgtcaagaagcagggaaaaggatagggagaaagggcgtgatagggaccgtgacaggggcagggaaagagacaaagacagggacagagagagggacaaggaccgtgatcgtcatcacagagatcgtcatagggatcggagtgacagaagggagagggagaggaccagagatagagatgatgatgaacgtcatcgaactcgagattatgacaagcaaagagatcatgacaaagatagagagagtcggcatagacacaggtctcgttcaaggggtagatctgagcataaatcaaggtctcgatctcgttctcgatccaagagcaaaaggattagtggttttgatatggcacctcctaccactgcaatgttacctggtgctacagctgctgcaggtcaagtgcccgggaccagcccaggaattcctggaatgttgcccaacatgtttcctttaacatcgggcccgtttggagctcttcctgttatgccgatccaggcaatgacacaacaggctacaaggcatgcccggcgagtttatgtcggtggacttcctgctacttcaaatgaacagtctgttgcgaccttctttagtcatgttatgtctgcaattggaggaaatacagctggtccaggtgatgctgttgtcaatgtctatataaactatgagaagaagtttgcttttgttgaaatgagatctgtagaggaagctagtaatgccatggcattggatggcatcatatttgagggtgcaccttgtaaggtcagaagacccagtgattacaacccttctctggctgctactcttggtcctagccaaccaaacccaaacctcaacctggcagctgttggattgtcaccaggttctgcaggagggcttgaaggccctgatcgtatttttgttggtggtttgccctactatttcacagaagcacagattagggagctgttagagtcttttggtgcacttagaggattcgatttggtcaaagatagagaaacagggaactcaaaaggctatgccttttgtgtctatcaggatgtttccgttactgatattgcttgtgcagctctcaatgggattaagatgggtgataaaacccttactgttaggcgtgctaaccagggtacaacacaacctaagcctgagcaagagagtgtattgttgcatgcacaacagcagatagctttgcagagacttatgttacaacctggtgcattagccacaaaggttttgtgtttaacacaagttgttgaggtagatgagctcagtaatgacgaggactatcaagatattttagaagacatgagaactgaatgtggaaaatttggtccactggtgaatgtagtaattccacgtccaagtcctgatggtgagcatgcaccaggggttggaaaggtatttttggagtatggagatgtggagagtgccagcaaagctcggcaaagtttgaatggaagaaaatttggtggcaaccaagttatagctgtcttctatccagaaaacaagttctatgaaggggactatgatggttagttgtatcgtatcctctttgagttgtcagaagtgctcagcaagtcttgtgttcttttatggcttataggaatcaccgcgttggactagtgctagatgtaaaactcgtttctgctttccttttcggagcattgtttgttttattctgaattatatccacctatttaggtttgatttttgtgttgctggtggtagatagtttttgatagccttaaatatgaagactttggggtgcttgtcaacagtgtgacaattgatgcaaatacagacccaagtcttcatactattttatttctacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="+" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="84376" stop="94422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84676" g_stop="84975" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84976" i_stop="86444" i_length="1469">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86445" g_stop="86689" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="545" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86690" i_stop="86886" i_length="197">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86887" g_stop="86994" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="653" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86995" i_stop="88180" i_length="1186">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88181" g_stop="88251" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="724" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88252" i_stop="88855" i_length="604">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88856" g_stop="88926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="795" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88927" i_stop="89017" i_length="91">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89018" g_stop="89062" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="840" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89063" i_stop="89141" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89142" g_stop="89201" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="900" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89202" i_stop="91863" i_length="2662">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91864" g_stop="91924" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="961" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91925" i_stop="92010" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92011" g_stop="92123" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="962" r_stop="1074" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92124" i_stop="92535" i_length="412">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92536" g_stop="92982" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1521" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="92983" i_stop="93094" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93095" g_stop="93230" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1522" r_stop="1657" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="93231" i_stop="93324" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93325" g_stop="93392" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1658" r_stop="1725" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="93393" i_stop="93684" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="93685" g_stop="94122" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1726" r_stop="2163" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="+" ref_id="SGN-U567083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84676" e_stop="84975"/>
          <exon e_start="86445" e_stop="86689"/>
          <exon e_start="86887" e_stop="86994"/>
          <exon e_start="88181" e_stop="88251"/>
          <exon e_start="88856" e_stop="88926"/>
          <exon e_start="89018" e_stop="89062"/>
          <exon e_start="89142" e_stop="89201"/>
          <exon e_start="91864" e_stop="91924"/>
          <exon e_start="92011" e_stop="92123"/>
          <exon e_start="92536" e_stop="92982"/>
          <exon e_start="93095" e_stop="93230"/>
          <exon e_start="93325" e_stop="93392"/>
          <exon e_start="93685" e_stop="94122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAATAAAATTTAGTTACGTTTGTACTAAACAATCTCTCTCACCCAACTTGGAGCCCTAGTTTATGTGTTCTGAACTCCGAACTCCATCAACAACGCAGAGGATCGAACAAGGCGAAGCAAAGCACAATTCAGTAGAAAGCTACCTTCACTGAGAGTTACAGAAGCCCTAGCCATGCCGGACTATGAAGCCAATGGAGAAGACATAGACAATTCCGGCTCTTCTCCCCTTCCCAAATCCAGAAGTAGCCATGGCGGCACTAATCCCGATAATTTCACCGACTCCAAGCCTCAGGTTCTAAAATTCTCTCTCTCGCTCGCTCTTTGACCATCCTTTTTTCATTCATACCTAACATGTGGGTTTTCGCCTTTCTTTTTTGAATCGAGTAATGTAAGAGATAAATTGTCTGAGGCTTAGGAAAAGCAATCTGGAGATTTCAGGATTCACTGAAACAGTCGAAATGAGCCTATCTGCAGCAGGTTTTTTCCGATGACGAAGTGCTTGAGGTGTAGGCAAAACCTGTAGATATCAGGCTTTAATCTCCACTTCAAACACTCAGTAGTGCCTAGTGTACCTAAATAACCTAACTCTTTTGAGAACGATAGAAAGCTTTAGTCTATTTCTAGTAAGACAGAATCAAGGGAAATTTTTCCCAATTCACGTGTTTATGGGCAGTAGCAAGTAGGTTAGTGGAGGCAAGCTTGATTGGGGGCTTGGGGCAAGTTTCCTATAGTTGTGCTTGTGGATGAAAGCAGGTTGCTAGTAGATTAGTTGAGGCAAGCTGTTTATACAAAAAGGGGAGAACAAGAGATTGTATCTGAAAGGTCGGATTTGTGGAGGAAGGTGTTATGATGGAATGGAACAAATGATTTTGTTTAGGTATTCCATTTAAGGTCAGTTGTGAGTATTGCTCCTTGAACTGTGTGAATCATTCTAATGGTGAGCATTCAAATATTCTAGGCTATTACTGTGTAGGTGCTATCTGCTTGCACATCTCTTAAACTCTCAGAAAACTTCTCTATCCCTGCAGGGGTAAAATTTCAGGATGACCCTGCATATGTAGTTCTGATATGTGAAAACTGAGCACCTCTTGGGTTTTGAACATTTGCCTATAGTAGGTTGCTTTTCTTAGTAGTATTAATTCTAGTGCTATAGTCTTTTGCCACCTTTCATCTGTTCAGTTTCAATCTCAACTGTAATGATTTGACCCTCAATATAATTCCTTTCCCATCTATCTCCAAAAAAAAAAAAAATCCTTTTTCCATCCTTAGTTTTGTATTCATATGTCTTCTAGTTTCCTTCATCTGTTTTTTTTTTTGTGATACAAGGGAAACCCGCAGCCGCTACCCTTTTTGGGTCCTTAGTTTTGTATTCATATGTCTTCTAGTTTCCTTCCTCTGTTTTTTTTTTGTGATACAAGGGAAACCCGCAGCCGCTACCCTTTTTGGGTGTGCACAATGTAAAATCCTGCTCCTAAGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCAAAGGGTTCCGTCATCCGCTTATTAATATAATTCCTTTCCATCTATCTCCAAAAAAATATAAATTCCTTTTCCATCCTTAGTTTTGTATTCATGTCTTCTAGTTTCCTTCACTTGCTTATTTTTTTTCTTACTTGTGTGTCTCTTCCAGCATAGTTCTCGTGAATATGAAAAAGATAAGAGCTCGTCAAGAAGCAGGGAAAAGGATAGGGAGAAAGGGCGTGATAGGGACCGTGACAGGGGCAGGGAAAGAGACAAAGACAGGGACAGAGAGAGGGACAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGACAGAAGGGAGAGGGAGAGGACCAGAGATAGAGATGATGATGAACGTCATCGAACTCGAGATTATGACAAGTAAGAGCTATAACACTTTTTGATGTTAGTATTTATATTGCTTTTGTGATTTCACTTTGGCTTTATGTTACTGTTGTGAGTCGGATTCAGACTTGGGGATCATGTTTTTATGATCTTTAAATTTCAAGTTGTTGTTGAGTGGTGGTGGAAGCATGCTTCATTTTGAGTTTGTGATATATTTAATTATTTTGCTAAAGGCAAAGAGATCATGACAAAGATAGAGAGAGTCGGCATAGACACAGGTCTCGTTCAAGGGGTAGATCTGAGCATAAATCAAGGTCTCGATCTCGTTCTCGATCCAAGAGGTTAGTTTTCTGATCATATATATTCTCACTGGAGCTTTTCCATGTTATATTCTCTTTTTAATTCCTAATGTTCACTTAAGACAGGATTTTTCTGTTTGAACTTCAGTTTATAGTTGGCTTTACCTTGTAAATACTCATTTACTGTAAATATGTTGAACTTATTTAAAGACTCTTTGATCTGTCAGGCTGGAACGGAATGACCAATATCCAATCTTTACATAGAAGTGCACTAAAATGTTACATGGAGATTTTCTTATGTGACTTAATATTTGATTAAGCATTAGATTTGTTAATTACAAAAACTTAAATTGATCTGAGATTCTTCCACTATTACTGGAGATGAATTGGCCCAGAGGTTTCTTTTTGTCCTTTGGTTTTTAGTTACACTTGGTTGAACGATTCTTATGTTTAGTGTTTTTGAGATCACACTGGACAATTTATGTGGCCTTGGCTTGCTTTATTCATTGTATAAATAGTCTGTTTTTGCTGATTTTTGTTTCTTAGAATATTGGATATTACTGTCAACTGTCATACATCTCACTGAGGACTTGTAATGTTTGAAAGAGTTGCACATTCAGGTAACAATATTTGGTTAAGCTGGTGATGGTTATAGCATATATCAGGGGGACTTGCATGAGAAAAATTGCCCGATCAGTTCTCTTGTAAAATAGTTAGATTCTTATTCTCACAGCCTGCATTGATTGATCTCTTGAATTTTTCTTTAGGTCAAATGACATGCTTTGCTTCTGGAACATATTTGCAACTTCTCTGTGTCTTGTTATTCGGACTGCTATTTCTGAAACTTCAATAGAACACAACGGGTCAAATTTTATTGTAAATGGTCATCTTGAAAACAGTGATTCTTTTTCCTTTCCGTGGAGCGAAGTACTTTCCCTTGTTCTTGTCCTGTCATGCCTACGGTCCACATTAAAATGGTGGGATTTTGTGGTATTTATCTACTGAAACACAAGAAACCTAGTCATACATTTTCCTTGTTGTCTCATTGGCCCTGTTAAAGAACTGGCAAATTTAACCTTCTGTTGTACTGTTTACTTAAAAAATATATATTCTTTTATGTATGCCCCAAGAACAAATTGAGTGGCTAATGTTATATGGATCATTAATTGTTAAATTAATAGCCGAGTTTTAGTCACTTCATTACTGTTACTAATTTGTATTTTTTCAGCAAAAGGATTAGTGGTTTTGATATGGCACCTCCTACCACTGCAATGTTACCTGGTGCTACAGCTGCTGCAGGTACTTGTTTCATTGTTAAGATTACAGCTGAAATTTTATTGATAACTGCCACATTTTTCTTTGACTTGGTGTAGAAAGTTCATATCAAAATACATGGTTACGTTTTGGTAAGCTATTGTTTCTTTAACTTCAACCTATATTGGTATTGAGTCATGGAATAGATCGGCTGTTTTGTTTTCTTTATCATTTACTTGGTGAAGTAATTCCGAAACTGAGGGTTTTTGGTTTCTTGTTTTGTTTGGTGTTTGTTTGTTTGTTTTGTATGTCTTATCTTATGTTCTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGTGTGAACCGACTTCTGTAGCTTTTATGTACAAGGAAGAACCAATACAGGTCTTGTTCATCTTCATCCAGGAATTGCCTGTTTGGTAGTTACAAATATTTTCTGAATACACTGTAAAATTTCCTCTCCTCGTACTGTTTTAACTAGATCTCTGAGTACAAGATTCATTCATTCTTTCAAAATCATTTTAAAAAGGGAACTGTTCATGTAAATTCTCACTCCATACTGCTTAAAATATGTCATGATGTCATTTTCAACTGTATCTTGGTCATCTCTGCAGGTCAAGTGCCCGGGACCAGCCCAGGAATTCCTGGAATGTTGCCCAACATGTTTCCTTTAACATCGGGCCCGGTATTGTCAACACTCCCTTTTTAGTTGCAAGGATTCAATGCTATTTCCAAGATTCTTATATATTTGTTCTCTTCTGATGGGGTTTTGGCAGTTTGGAGCTCTTCCTGTTATGCCGATCCAGGCAATGACACAACAGGTTTGTAATCTGTTAGTAAGCTAATGGGGCACATGAGTTCCTCTTCTTACCTAAAGTATTCCCTAACTTGTGTTATCAGGCTACAAGGCATGCCCGGCGAGTTTATGTCGGTGGACTTCCTGCTACTTCAAATGAACAGGTATTAAACCACGCCCCACCAATCTCATGAAGTAGTTGGTCTCTTTGACATTTCCATATAATGTTTATTTTTTGAACAAGGAACCTCTCCTGTAATTTTTTGCATAGTAATTTCATCTGTTTCTGATATTTTCATCTTTCTTCCCCTTCAAATATGAGAGGTACTATTTCTTTTTCTGCATACACTCCGTCAAAAAAAAAGTTATGCAATTTGGTGTGTTGAAATTCGGCCGACACAGTACTCCAATTTTCTGTAACTATGATATTTTATAGGACTTCTAATCATATGAATAGTATGAAGTATAATAGAAGTTTACGTTATTAGAAGTATATTAATCTTTGTGGATATCAAGTAAATCTTAAATAATATTACTTATCTATAAAAAAAAAATCAAAAAAATTTAATTTTTAAGGGTATAAAAGTCTGTCAACATTGATGATTGCTCCGTAAGCGTTCTAAGTGCCCATTTGGATAAACTTAAAAGTCAAAAGTCATACCATACTTTTGGCTTTGGACTTATTTTAGAAGTTTTTTTAACCTAAAGGTGTGTGCTTCCTGCTTAATAGCACTTCTCAATATCCCAAACACTTCCAATAATTTAAAGTGCTTAAAAGTCAAAAACACCTACAAATTATATTAATCCAAACACCCTCTGTTATTGGTGCTTTTATACATTGTGAATTGAACACAAAATTCATTAATAAAGGCATCTGAAAAATAAATTTATCATCATGAGATAAAGCACTAAGAAAGAAGCCGTAAGTCAACAATCACATATTAAATATCAATAAAGAACATCACCAAATTAGAAGCAAACAAAGCTAATTTTGAACCCAAGATGTAAACAGGTACACGTGATATGCAAATGATTAGATGGTTTTGTTTAGAATCCATCTATGTAATTAACTTGTAACCTAGAGGTTAGATGGATAAACATAATTAGACCTCTATGCATATCATATGATGTAGAAAAGATATGAACTTTAACATGATCTAGCGGCAATGGTAATCGATAAATATGCCAACGAAATTCTATATAAGTGGGTGGTTCAAGGAGTTCTTTTTCATTTCAAATTCATAGAATGACTGGTAAAGAATTCAAGGATAGGTGAGACACAATCAGGCGGACCTACATGGTTTCCAGGACCTGAACCCCCTCGACAGAAAATTACGTTGTATATAGGGTGGATTTTCTATATTTCTATTCATATACTAATTTTTAACCACCTAAATCAAAGAAGAAAGCTTAGTGACACAGGACTGCGCAACTTGGCCGCGAATACTATCCCCAGTTTGCAGATTCGATTCCTACTGTGTGCGCAAGCTGCGTAATTTTTTTTAAAATTTAATTCACTCTTGTTGACATATTTTTTTTTTTCGAACTCCTTGAGTGAAATATCCTGGATCCCCCCACTGGACACAAGAATCAAATAGCTAAAAGATTGAACTTAGAAGTAATAGCGTTCTTTTACACTTTGTTTGGATCATTGTTACCCATTGTTTCATAATGTATTGTACTCTATTGTACTGTATTGTTTGGAAGATACAACGTTTCGTTAGATTGTATTGTTTGTTGTTGTTTAGTAACATTTTAATTGTTTGGTTTGATTGTATCGTATTGTATTGTAATTTATAAATTTACTTGAATATCCTTAATTATTCTAGGGTGGGAGGTTTGACTAGATTTAAATAATTAAGGTAAATGGTATAATAGTATTTTAAAATATTATGTAAAGATATAATTGGAAAAAGAAATTAAGTAACAATGGAAACACACCAAATTGGTTGTTCCATAAAATAGGGGTTTTCATTGGTATGTAAAAACGAAATTTAACAATACAGTACAATATATTTTAAGTAACAATCAAAACAAACAATTGTAGGTATAATAACGATACAATACAATACAATGGATAACAATGATCCAAACATAGTGTTAGGTTTTAAAAGTACTTTTTATAAGGAAATAGGATTAGCATCTATTAAGGGTATAACATTCGTTTAATATTTGATGGATATTTAAGTCAACCGACACTTGCATTCTAAAAATTAGGTAAAATATAAGATTAGAGTTCATTAAGGGTATAAAAGTTATTCAATATTTGAAGGATAATTTGGTCAACCAACTTTTATATTCATGCCTTTATTAAAATATAGATATTCTCTATGTAAAAATAGTAAGTGGTGATTTTATGAATGGTGCTTAAACACTTTGATTTCTACATCTAAAGAGTTACTATTTTGAATTTTAATAATGTCCTAGCAAAATGTCATAGAACCAACCTCATTTCATATCCCATCGGTATTATTTCTAGTGTTATTTCTTTTCTTGTGTGATATTTTTAGCATTTTTTTGTCAACAGGTTTCAACTTTCTATCCCTTTTTTGACTCTAGCTTCAGTTATGTATATAGAGGCCAAAGTTTTGCTTAATAGAAATACATATAAGTTTCTCAAATGAAGCTCATCTTCCTGTGGTCTGAAGATGATAATATGTTGGTCATTACTCGTGATAATTCTGATAGTTATAACTTTTGTGTGATCGCATGTTATCAAAAATATTACTATACTAACATGTTATCTTCCCTGTCAGAGTTGATTTTCTATGACCCATCTCTGAAATTGCTCTTATACATATGTCTTGACACATTGATTCTCTACAGTCTGTTGCGACCTTCTTTAGTCATGTTATGTCTGCAATTGGAGGAAATACAGCTGGTCCAGGTTAGTTTAAAATTTGATCACCTTTTTCATACAATTACAACTTAATTTACCTTTCAGATGCTCTAGAGTATTGTTGGAATTTTCAGGTGATGCTGTTGTCAATGTCTATATAAACTATGAGAAGAAGTTTGCTTTTGTTGAAATGAGATCTGTAGAGGAAGCTAGTAATGCCATGGCATTGGATGGCATCATATTTGAGGTACCTGAATGTGTTATAGCTGATCAAGTAATTTTGAAGTCGTAAAGAAGCTTTACTTTTTACCTCTTATAGTCGTAGGTGGTTTATCCACTTGGGAGAAAGCACGGATGTAGAAAATTTTAGTTTTAGGTGTATGCAACTATTCTTGTCCCTTGGGCCTTGTTTAGTCCCAGAACATTTTGGGTGCACACCTTCTATCCCCTTCCCATTATAATAACTGAATATCCTCAGACATGTTTCTTCTCTTTTGTATTTTTGTTTTTCATTATTATTATTACTGTAACTTATCGGATGTTATTGGACAATTGATTATCGAAGTATCATTTTTTTCCTGTTGCATCAATATCAAGTATTTGTCCCTACTTTCAACTGACTGCTCTGTGCTTCTCTGTCCGTGGTGTTTTTTGTGCAGGGTGCACCTTGTAAGGTCAGAAGACCCAGTGATTACAACCCTTCTCTGGCTGCTACTCTTGGTCCTAGCCAACCAAACCCAAACCTCAACCTGGCAGCTGTTGGATTGTCACCAGGTTCTGCAGGAGGGCTTGAAGGCCCTGATCGTATTTTTGTTGGTGGTTTGCCCTACTATTTCACAGAAGCACAGATTAGGGAGCTGTTAGAGTCTTTTGGTGCACTTAGAGGATTCGATTTGGTCAAAGATAGAGAAACAGGGAACTCAAAAGGCTATGCCTTTTGTGTCTATCAGGATGTTTCCGTTACTGATATTGCTTGTGCAGCTCTCAATGGGATTAAGATGGGTGATAAAACCCTTACTGTTAGGCGTGCTAACCAGGGTACAACACAACCTAAGCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAGGTGAGACATTTATGTGCACACTTATATAACTTTCAATTCCTTAGGAATTGATCTCCTAGCAACTATTTGGCTGCTCACCCCTTAATGCGTGTCTTTTTTTTATTTTTTGCAGAGACTTATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGTTTAACACAAGTTGTTGAGGTAGATGAGCTCAGTAATGACGAGGACTATCAAGATATTTTAGAAGACATGAGAACTGAATGTGGAAAATTTGGTGGGTAGTTAGATAAGATCTTTTTTCCCCTTGTTGTGCTAAGCATATGGCTTGTTTACTTAAAAGATCATCCACTTTGATATATATTCTTCAGGTCCACTGGTGAATGTAGTAATTCCACGTCCAAGTCCTGATGGTGAGCATGCACCAGGGGTTGGAAAGGTAAAAATACGTCTTCAGTTTTCTAGTCTGGGCCATTTAAAGTTTATAAGTTGTTAGCAGTGATCTTGTATATTTTACAAGGGAAGCGACACAACTTGGATCTGAAGTTCTTTGCAATGGCCTCCTAAAAACTGCTAGCAACTTTTATGAAGAAGCTTTTCAGTACGATTAGTTATAACTATCTCAAATGACGTTGAAAGAAAGGGTCCAATCTGTTGGATTGGTTCTTTGTCGATGGCTTGGTTTTCACTTGTAAAATGTGGAACTGCTAAATCATTTGTGTACCTTTCAGGTATTTTTGGAGTATGGAGATGTGGAGAGTGCCAGCAAAGCTCGGCAAAGTTTGAATGGAAGAAAATTTGGTGGCAACCAAGTTATAGCTGTCTTCTATCCAGAAAACAAGTTCTATGAAGGGGACTATGATGGTTAGTTGTATCGTATCCTCTTTGAGTTGTCAGAAGTGCTCAGCAAGTCTTGTGTTCTTTTATGGCTTATAGGAATCACCGCGTTGGACTAGTGCTAGATGTAAAACTCGTTTCTGCTTTCCTTTTCGGAGCATTGTTTGTTTTATTCTGAATTATATCCACCTATTTAGGTTTGATTTTTGTGTTGCTGGTGGTAGATAGTTTTTGATAGCCTTAAATATGAAGACTTTGGGGTGCTTGTCAACAGTGTGACAATTGATGCAAATACAGACCCAAGTCTTCATACTATTTTATTTCTACTTCTG</genome_strand>
        <mrna_strand>AATTAAAAAAATAAAATTTAGTTACGTTTGTACTAAACAATCTCTCTCACCCAACTTGGAGCCCTAGTTTATGTGTTCTGAACTCCGAACTCCATCAACAACGCAGAGGATCGAACAAGGCGAAGCAAAGCACAATTCAGTAGAAAGCTATCTTCACTGAGAGTTACAGAAGCCCTAGCCATGCCGGACTATGAAGCCAATGGAGAAGACATAGACAATTCCGGCTCTTCTCCCCTTCCCAAATCCAGAAGTAGCCATGGCGGCACTAATCCCGATAATTTCACCGACTCCAAGCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTTCTCGTGAATATGAAAAAGATAAGAGCTCGTCAAGAAGCAGGGAAAAGGATAGGGAGAAAGGGCGTGATAGGGACCGTGACAGGGGCAGGGAAAGAGACAAAGACAGGGACAGAGAGAGGGACAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGACAGAAGGGAGAGGGAGAGGACCAGAGATAGAGATGATGATGAACGTCATCGAACTCGAGATTATGACAA.....................................................................................................................................................................................................GCAAAGAGATCATGACAAAGATAGAGAGAGTCGGCATAGACACAGGTCTCGTTCAAGGGGTAGATCTGAGCATAAATCAAGGTCTCGATCTCGTTCTCGATCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGATTAGTGGTTTTGATATGGCACCTCCTACCACTGCAATGTTACCTGGTGCTACAGCTGCTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTGCCCGGGACCAGCCCAGGAATTCCTGGAATGTTGCCCAACATGTTTCCTTTAACATCGGGCCCG...........................................................................................TTTGGAGCTCTTCCTGTTATGCCGATCCAGGCAATGACACAACAG...............................................................................GCTACAAGGCATGCCCGGCGAGTTTATGTCGGTGGACTTCCTGCTACTTCAAATGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTGCGACCTTCTTTAGTCATGTTATGTCTGCAATTGGAGGAAATACAGCTGGTCCAG......................................................................................GTGATGCTGTTGTCAATGTCTATATAAACTATGAGAAGAAGTTTGCTTTTGTTGAAATGAGATCTGTAGAGGAAGCTAGTAATGCCATGGCATTGGATGGCATCATATTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACCTTGTAAGGTCAGAAGACCCAGTGATTACAACCCTTCTCTGGCTGCTACTCTTGGTCCTAGCCAACCAAACCCAAACCTCAACCTGGCAGCTGTTGGATTGTCACCAGGTTCTGCAGGAGGGCTTGAAGGCCCTGATCGTATTTTTGTTGGTGGTTTGCCCTACTATTTCACAGAAGCACAGATTAGGGAGCTGTTAGAGTCTTTTGGTGCACTTAGAGGATTCGATTTGGTCAAAGATAGAGAAACAGGGAACTCAAAAGGCTATGCCTTTTGTGTCTATCAGGATGTTTCCGTTACTGATATTGCTTGTGCAGCTCTCAATGGGATTAAGATGGGTGATAAAACCCTTACTGTTAGGCGTGCTAACCAGGGTACAACACAACCTAAGCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG................................................................................................................AGACTTATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGTTTAACACAAGTTGTTGAGGTAGATGAGCTCAGTAATGACGAGGACTATCAAGATATTTTAGAAGACATGAGAACTGAATGTGGAAAATTTG..............................................................................................GTCCACTGGTGAATGTAGTAATTCCACGTCCAAGTCCTGATGGTGAGCATGCACCAGGGGTTGGAAAG....................................................................................................................................................................................................................................................................................................GTATTTTTGGAGTATGGAGATGTGGAGAGTGCCAGCAAAGCTCGGCAAAGTTTGAATGGAAGAAAATTTGGTGGCAACCAAGTTATAGCTGTCTTCTATCCAGAAAACAAGTTCTATGAAGGGGACTATGATGGTTAGTTGTATCGTATCCTCTTTGAGTTGTCAGAAGTGCTCAGCAAGTCTTGTGTTCTTTTATGGCTTATAGGAATCACCGCGTTGGACTAGTGCTAGATGTAAAACTCGTTTCTGCTTTCCTTTTCGGAGCATTGTTTGTTTTATTCTGAATTATATCCACCTATTTAGGTTTGATTTTTGTGTTGCTGGTGGTAGATAGTTTTTGATAGCCTTAAATATGAAGACTTTGGGGTGCTTGTCAACAGTGTGACAATTGATGCAAATACAGACCCAAGTCTTCATACTATTTTATTTCTACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594356" ref_strand="+" ref_description="SGN-U594356 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttctgaactccaaactccatcaacaacgcagaggatcgaacaaggcgaagcaaagcacaattcagtggaaagctatcttcagtgagagttacatacagctactgaagccctagccgtgccgggttgtgaagcccatggagaagacatagacaattacgggtgttctccccttcccaaatccagaagtagccatggcggcattaatcccgatgatttcaccgactccaagcctcagcatagttctcgtgaatatgaaaaagataagagctcgtcaagaagcagggaaaaggatagggagaaagggcgtgatagggaccgtgacaggggcagggaaagagacaaagacagggacagagagagggacaaggaccgtgatcgtcatcacagagatcgtcatacggatcggagtgacagaagggagagggagaggaccaaacatagagatgatgatgaacgtcatcgaactcgagattatgaccagcaaagagatcatgacaaagataggagagagtcggcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="+" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="84451" stop="87224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84751" g_stop="84975" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84976" i_stop="86444" i_length="1469">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86445" g_stop="86689" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="480" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86690" i_stop="86886" i_length="197">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86887" g_stop="86924" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="519" r_length="39" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="+" ref_id="SGN-U594356" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84751" e_stop="84975"/>
          <exon e_start="86445" e_stop="86689"/>
          <exon e_start="86887" e_stop="86924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACTCCGAACTCCATCAACAACGCAGAGGATCGAACAAGGCGAAGCAAAGCACAATTCAGTAGAAAGCTACCTTCACTGAGAGTTAC--A--------GAAGCCCTAGCCATGCCGGACTATGAAGCCAATGGAGAAGACATAGACAATTCCGGCTCTTCTCCCCTTCCCAAATCCAGAAGTAGCCATGGCGGCACTAATCCCGATAATTTCACCGACTCCAAGCCTCAGGTTCTAAAATTCTCTCTCTCGCTCGCTCTTTGACCATCCTTTTTTCATTCATACCTAACATGTGGGTTTTCGCCTTTCTTTTTTGAATCGAGTAATGTAAGAGATAAATTGTCTGAGGCTTAGGAAAAGCAATCTGGAGATTTCAGGATTCACTGAAACAGTCGAAATGAGCCTATCTGCAGCAGGTTTTTTCCGATGACGAAGTGCTTGAGGTGTAGGCAAAACCTGTAGATATCAGGCTTTAATCTCCACTTCAAACACTCAGTAGTGCCTAGTGTACCTAAATAACCTAACTCTTTTGAGAACGATAGAAAGCTTTAGTCTATTTCTAGTAAGACAGAATCAAGGGAAATTTTTCCCAATTCACGTGTTTATGGGCAGTAGCAAGTAGGTTAGTGGAGGCAAGCTTGATTGGGGGCTTGGGGCAAGTTTCCTATAGTTGTGCTTGTGGATGAAAGCAGGTTGCTAGTAGATTAGTTGAGGCAAGCTGTTTATACAAAAAGGGGAGAACAAGAGATTGTATCTGAAAGGTCGGATTTGTGGAGGAAGGTGTTATGATGGAATGGAACAAATGATTTTGTTTAGGTATTCCATTTAAGGTCAGTTGTGAGTATTGCTCCTTGAACTGTGTGAATCATTCTAATGGTGAGCATTCAAATATTCTAGGCTATTACTGTGTAGGTGCTATCTGCTTGCACATCTCTTAAACTCTCAGAAAACTTCTCTATCCCTGCAGGGGTAAAATTTCAGGATGACCCTGCATATGTAGTTCTGATATGTGAAAACTGAGCACCTCTTGGGTTTTGAACATTTGCCTATAGTAGGTTGCTTTTCTTAGTAGTATTAATTCTAGTGCTATAGTCTTTTGCCACCTTTCATCTGTTCAGTTTCAATCTCAACTGTAATGATTTGACCCTCAATATAATTCCTTTCCCATCTATCTCCAAAAAAAAAAAAAATCCTTTTTCCATCCTTAGTTTTGTATTCATATGTCTTCTAGTTTCCTTCATCTGTTTTTTTTTTTGTGATACAAGGGAAACCCGCAGCCGCTACCCTTTTTGGGTCCTTAGTTTTGTATTCATATGTCTTCTAGTTTCCTTCCTCTGTTTTTTTTTTGTGATACAAGGGAAACCCGCAGCCGCTACCCTTTTTGGGTGTGCACAATGTAAAATCCTGCTCCTAAGCAATAACTCGCAAACCACATAGGAGAGGTAACCCGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCAAAGGGTTCCGTCATCCGCTTATTAATATAATTCCTTTCCATCTATCTCCAAAAAAATATAAATTCCTTTTCCATCCTTAGTTTTGTATTCATGTCTTCTAGTTTCCTTCACTTGCTTATTTTTTTTCTTACTTGTGTGTCTCTTCCAGCATAGTTCTCGTGAATATGAAAAAGATAAGAGCTCGTCAAGAAGCAGGGAAAAGGATAGGGAGAAAGGGCGTGATAGGGACCGTGACAGGGGCAGGGAAAGAGACAAAGACAGGGACAGAGAGAGGGACAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGACAGAAGGGAGAGGGAGAGGACCAGAGATAGAGATGATGATGAACGTCATCGAACTCGAGATTATGACAAGTAAGAGCTATAACACTTTTTGATGTTAGTATTTATATTGCTTTTGTGATTTCACTTTGGCTTTATGTTACTGTTGTGAGTCGGATTCAGACTTGGGGATCATGTTTTTATGATCTTTAAATTTCAAGTTGTTGTTGAGTGGTGGTGGAAGCATGCTTCATTTTGAGTTTGTGATATATTTAATTATTTTGCTAAAGGCAAAGAGATCATGACAAAGATA-GAGAGAGTCGGCATA</genome_strand>
        <mrna_strand>TTCTGAACTCCAAACTCCATCAACAACGCAGAGGATCGAACAAGGCGAAGCAAAGCACAATTCAGTGGAAAGCTATCTTCAGTGAGAGTTACATACAGCTACTGAAGCCCTAGCCGTGCCGGGTTGTGAAGCCCATGGAGAAGACATAGACAATTACGGGTGTTCTCCCCTTCCCAAATCCAGAAGTAGCCATGGCGGCATTAATCCCGATGATTTCACCGACTCCAAGCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTTCTCGTGAATATGAAAAAGATAAGAGCTCGTCAAGAAGCAGGGAAAAGGATAGGGAGAAAGGGCGTGATAGGGACCGTGACAGGGGCAGGGAAAGAGACAAAGACAGGGACAGAGAGAGGGACAAGGACCGTGATCGTCATCACAGAGATCGTCATACGGATCGGAGTGACAGAAGGGAGAGGGAGAGGACCAAACATAGAGATGATGATGAACGTCATCGAACTCGAGATTATGACCA.....................................................................................................................................................................................................GCAAAGAGATCATGACAAAGATAGGAGAGAGTCGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573528" ref_strand="+" ref_description="SGN-U573528 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|118484601|gb|ABK94174.1| (e_value=1e-20) unknown; (*ATH) AT1G06515.2 (e_value=1e-21) |; ">
      <seq>cggccgaattgtcatttgttcttcatatttcacattttttttctgtttaaacggagaaaaatgaattgggttcaacggaaaatttatctctacaatgtcacttttggtttgtacatgctcgactggtgggaacgttgtctcttcaatattttggtgcttgtgttgctatggtttatgtgttacaacgggtttcgatttgcttctgagctcttcaataggcaaatgtggtgaaagttcatcatctgtgtcctatatgcatgttttggcatttaacttttaaagttgtgaaattgtttgctgtgccatggatatagttggctttgtatgaattcatattactagaaaaatacgtcgttcttttcttattctttaccaatagatgatatttattgtaatagttcgaacaatcaatcataaattcaagttgaatttcttgattgttgtaagcaatgcttcgaaattagctttattaatttgtgaagttcttctttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="+" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="95963" stop="101892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96259" g_stop="96404" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96405" i_stop="96538" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96539" g_stop="96611" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="218" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96612" i_stop="101316" i_length="4705">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101317" g_stop="101592" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="494" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="+" ref_id="SGN-U573528" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96259" e_stop="96404"/>
          <exon e_start="96539" e_stop="96611"/>
          <exon e_start="101317" e_stop="101592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAAATTCATCATTTGTTCTTCATATTTCACATTTTTTTTCTGTTTAAACGGAGAAAAATGAATTGGGTTCAACGGAAAATTTATCTCTACAATGTCACTTTTGGTTTGTACATGCTCGACTGGTGGGAACGTTGTCTCTTCAGTATCCTTTTTTGTTTCTCATGTTCTTCAATTTTGTTAGATCTCCTTTTAGTTTATCGATTTTCAATTTATTCTGCTGATCTGTGATTTATCTATCAGATTTTTATTGGATCTGGAGTTCTTAACGCTTTTTAGATATTTTGGTGCTTGTGTTGCTATGGTTTATGTGTTACAACGGGTTTCGATTTGCTTCTGAGCTCTTCAATAGGTATGTGATTCGTTTTCTCTTGAGGGAAGTTTAGTTTTGTTGTTATAAGTTGCAATTTGTTTGATTTTTCAGCAGCTATCACAAATTCATGTATATTTTGTCCATAAGTTTGATGGTGGAGATTGGATGTAGAAAAGGAGTGCAACTGGGATTAGTAAATTATTAAAGTTAACTGATGGTCGTTTTGAAGTTTAATTCTTTGTTTTGAAAATAGATTATAGTGAACTTGTATAGTGATATTAATGTATGCCATTTTGTAGTCTATATGGTCGAATCTCAATGAATGTAGTGGAAGGATTGTAAAAAGATGCATTCTTATTTGATAGTTTAGAGGATTCTGTGTATTGTAAAAAGATGCATTTTTTATGTTCTGATCACCTAACTATGAATCTTAAGAGGTAGGTAACACCAGGTTCTAGTAGTGATTTTGGTTCAGACAGATGGATGATTGTTCTCACGAAAGTTGTGACTCCCAGTGATTTACCATTCCCGACAGCAGAAATGAAAAAGTAAAAACCTTCAAAGAAGCATTGAATGCACCCAACGGTGTGGTGTAGTGGTCAATAAAGTGTGAGGCAGTGTTACAAAAGGCGAGCGCCTCCTCGCCTTTGGCGAGAGGCGAGGCGAGGTTATGGGTCCTCGCCATTCTCTGCCGAGGCGAGGCGATAGTAAAAAGGCGAGGTGTGGCGAGGTGTGGCGCTGCAATGGCGACAGAAAAGGCGCCGCCTTTTTTAATTAAAAATATTTGACTTAATAATAGTCAAAATTAGGGTTTTTTTTTTTTTTTTACTTTTGAAAATTCTGAAACTCCATCGTGACTCTCTCTCTCGATTGACTCTCTTCTCTTCTCCTCCATCGCTGTCTCTTCTCCCTCGCTCTCCATTGCTGTCAGCTTCTCCATCGCGATCCTCTCTCCAGTTCTCCCTCGCTGTCGGATTCTGTTCTCCTTCTCCCTCGCCGGCCACCGGCTCACGATTGTGTTCCCTCCGACCCTCGCGACTCTCTGTTCTGCAGGGATCGTTTTCTCTCTTCTTCTTCAACAATTTTTTTCTATTCTTCTTCTTCAGTTTTTTTTTTCAGTTGTGTTTTTTTGGTGTAAGGCTGTAAGCACTAAGCAGTGCTTAGTTGCTTACTGCTTTGTGTAAACTTTTTTAAAAAAAATTATAGGCAGTTAATTAAAAAAATCTCTCTTTTCCTAATTATCTATTTCAATATTCCTAAACAGCGAATTAATAGAATTTAATAACCAATGGCGGATGCTAGCAAAAAGAGGGACATTGGATGGAATTATGGCACTCAAGGATTGAATAATTTTGAAGAAGAATAGAATTTTAAAGTTTTGGTTTATTGTATTTTGAATTGTTTGGTCTTTAAAGTTTTAGACATTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGTTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTTAATTTTTGGTATTAATTGGCACCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCTCGCCGTCCACAACACTGGTGTGAGGAGAATTATATGGTCTTAGTTTCAAATCCCAAGTGAAATCCTACTGAATCCAAAGGAATTTAGCTGGAAAAAATAGTCAAGCTAAAGTTGCAAAATCATGACATCTGAATGAACCCAATTCATGAATACTCCATTTGGCAATCTGTTGTTCTTCAAATTTATGTCAATTCTCCATTGACCACCATTGTCTATAAAGCTACACCAAGTTCTGATATTTCTCTTGTTTCCTGATTTAGTTGATATGATTTAAGATAGATTTAAGTTATTTTATAGTAATTTTAATTAGTAGTACCTTGTTAATAGATGCAGATTATTTTTGTAGTAACCTTTCATGAGGGGCCTAACTTTCTTCTTTGATGAAGTAAGTTGTTGCATTTCTGGCGTCAAGAAGATGCAATGGTTACAAAAGAAGTAATGTTAGCTCCAATACATTTGTCTATGCTAGGACTGGGAACTAACAAAAAACAAACAAGAAGGGACAGTGTCTGGACAAAAAAAAATGAGACTATGCTAAAATGCAATTAAGCTGTTAGCTCTATATACCAAAAAAACTAATCTATGTGTAGGGAGCTAACAAAGTCCAAAAACTATTCAGGGAAATCTACGGGGGAAAGTTTACTTTAACTAAAGAGAAGTAGGATACATTTAGCCTTGAGAGAGTGATTTGGAGTTGATATCACACCATTAAAACATCTGTGATTCCTTTATCTATGCTATCCAAAAAATGCTTTCTGGTATTATAGTCCTGACTTTCCTGATGGCTTTATCAACTTTTCATGAGCTCCAACATTCACCTGCTTACTTCAGATTTTGTGGCACCACTCATTTAAGTCCAAAAATAGAATAAAACATATTTCAAATGTCATTTGCAACTGTACAGTGGAGCAGTGAGTGATTGACTCTACTGTTTTTTGGGCATATTGCATCTAGTTGTAATTTGAAAGTTTCTTATGACGAGGTTGTCCTGGATCTAGCATGCTCCATGTTATTCCTAGCCAGTTGTAGCAAATTATCTTCATTGGTAACTTTGTCCTCCAAATCAGCTTCCAAATACCATTGTGGGAAGTTAATGACTGTAACCTTTTCTAGCTGTGACTATTCCTTCTTTTGTATGATCCCATTTTAGACTATCTGGATTCTGATGCATCACTAATCACTGAGTCGTCCAATCTTGTTAGGAGACCTAGGAGATCTTCTCCGTCATTGATATTCGTTCTATATATAATATTCCAGCTTTCCCATCGCTAATGATAAATGGATAAGTTAGTATCCCAAAAAAAAAATGGAATAGTCGGAGGAATTCTTTCATTAGAACAGAGTTGCTTAGCAACTTATATATTAGAATTTCCAACTGAGAAAGATTATTCTGTAGAAATTCCTCCCATAGTTTGCTAATAGTTTTCCGTAGACATACCCCTGGAGGTGTTCTTTAAACTTTGGTGCACCAATTTCCATGCTTTGCTTTAACAACTATCTTCTTTTTTTTAAACTGGTAATGTTATATTCCTCAGCATTAAGGTATGCTGGAGAGCTCCAAAAAGGTAGCAACAAGCCGGGTAATGTTGCTTTAACCACTTTCTTCCAGAGACATCCTGGCTTTACCTCCATAGCATGTCATTGTCATGCATTTGTCATGAATGGCTGGGTCTCTTATTCCCAGACCCTCTTGAGATATTGGTTCAGTGACTTTGGTCCATTTCACTGAAGTGAACTTTATGAAAACTATTATTACCAACCCTGAGAAAATTCCTCCTAATCTTGTCTAGTTGCTTGAGAACCTTACCTGGTTTAGGAATGAGACATGTAGTAAGTAGGGATGCTTTCCACAGAACACTGTTGACTAGTGTAACTCTACCTTCCGCAGAGATACTGCATTTTCCACGGTGCAAGCCTTTTCTCCAAGTTTCATACTGTATCCAAATTCCAACAGCTCTGAATTTAGTAATGGAAGCCCCAGCTATAGGTAGTTGGGAAAATACAATTACCGTAGTACAAAAGATCTATCAGTTAAGTCAAGTTTGACTTTGAATTAGCGGATACCTCACACTCTTCAACATGTTGAGGTGAAGATCTGATGAAGCTTCAAATATTAAGAGCGTGAGATCAAGTTTACGAACTTGGGTTAACTCTACTTGAAAAAAAATCGAAGTACATCAGCCTAGAGTAAGTAGCACTGATTGAGTTCTTAGAAGCCCAATCTCAAACCTTTTAACTAACTCATTTGAACAAATTTATCCTACATTATTTTTATATCCCTCGATAGCCAAGATGAAGAGGAAAGTGAGAAGGGTCCCTCTGTCTAAGATCCTTGAAATCCTGCTGGAGAACTGGTAATTTACACTGAGAACTTGACTATGGAGATGCTGAACTTGATCCATCTAACACACCTATCACCATACCTGATTTCCCTTAGTATAGAGATAAGATGTGACTAATTTAGTTGATGAAAAGCTTTCTCTATATCCAGTTTGTGAAAAATACATGCCTCCCACTTTTAGTTTCCGATGAAGAACTTCATAGCAATTAAAGCTGTATCAGCAATTTACCTGCCTTAAATGAAAGCATCAGTAAGGGGCCTAACTTTCTTTAACACACTGTACCTGGGGATAAGAATCTTTTGATTGTTTTTGCTATTCCAGTGGCAAAGTTCGAACCTTTTGATTGTATTAAGTAAGTGATTTTTGAAGAAAGAAGCTAAGGTGGTGTAACACAGTTGAGCCTGGAAATATGGTTGAATAAATATAACTGAAGCAGTCGAATTGTTAAACAATATTTGGCGGTCAGTGATCACTAGTTTGAAAAATAACGTTGGTTTTTAGTCTTGTTTGCTTGGACATGTGACCTATGTTATTGAGATGAATCTTAATTGTTTGCCATAAAAAGGAATTTGATGTATCTCTTTCTTATGATCAAATGAACTTATGTGCAACACTAATATCCTCTTTCACTTCCTGCTAATAGGGAATACTAATGTGACTCTGTTGAAACACCATTTTATGGTTTCGTGTACCTTATTAGTTCTGGAAATATATATCCTATTTTGCACCAGTTATTATAAGCGAGTTCTTACTTAAATTCTCACTTATATCTTTGATATTTTTCTTGTCTCAGGCAAATGTGGTGAAAGTTCATCATCTGTGTCCTATATGCATGTTTTGGCATTTAACTTTTAAAGTTGTGAAATTGTTTGCTGTGCCATGGATATAGTTGGCTTTGTATGAATTCATATTACTAGAAAAATACGTCGTTCTTTTCTTATTCTTTACCAATAGATGATATTTATTGTAATAGTTCGAACAATCAATCATAAATTCAAGTTGAATTTCTTGATTGTTGTAAGCAATGCTTCGAAATTAGCTTTATTAATTTGTGAAGTTCTTCTTTCCC</genome_strand>
        <mrna_strand>CGGCCGAATT-GTCATTTGTTCTTCATATTTCACATTTTTTTTCTGTTTAAACGGAGAAAAATGAATTGGGTTCAACGGAAAATTTATCTCTACAATGTCACTTTTGGTTTGTACATGCTCGACTGGTGGGAACGTTGTCTCTTCA......................................................................................................................................ATATTTTGGTGCTTGTGTTGCTATGGTTTATGTGTTACAACGGGTTTCGATTTGCTTCTGAGCTCTTCAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGTGGTGAAAGTTCATCATCTGTGTCCTATATGCATGTTTTGGCATTTAACTTTTAAAGTTGTGAAATTGTTTGCTGTGCCATGGATATAGTTGGCTTTGTATGAATTCATATTACTAGAAAAATACGTCGTTCTTTTCTTATTCTTTACCAATAGATGATATTTATTGTAATAGTTCGAACAATCAATCATAAATTCAAGTTGAATTTCTTGATTGTTGTAAGCAATGCTTCGAAATTAGCTTTATTAATTTGTGAAGTTCTTCTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585919" ref_strand="+" ref_description="SGN-U585919 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=8e-27) BAC19.12; (*ATH) AT5G66730.1 (e_value=2e-26) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:26658878-26661628 REVERSE | Aliases: MSN2.12, MSN2_12; (*SWP) sp|Q700D2|JKD_ARATH (e_value=2e-23) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD; ">
      <seq>tgaaaagttaaaaagagtgaaaacactagtatcatacaagacttttctcactcaatttttctactttctctctctagtttccttgccgccgaccactcaaaatccccccattttcaccttttttccgatctggagtttcgaccctatttctcttattgttgtaatacatgtgaagatttgagtattgtagccgaaatcttactggggaactcactgttttgagtggtatagcaaatcccatttgcattaatttgagttttttttcgccggtgagtgatttcttgccaatttttgtatctgggtttttcttatctacttggctttgagctggttttgtattatgggtgtttgctaattagctagtctgagcttgtgttcagatacactagttgggtacagaaagaagaagaagcaatattgaatggtagatttgctaaaagaagcgagtaggaagtttgttaagtagaaatggtgtagattttttacattttaggcactacataaaccctagaagaattctatttcatacgccatgaatgattgcgtgggctctggtgaagtgagtgtattgtcttctggtgatcagacagctccttgtaaagaagcagcaaagaaaaaacggaatctacctggaatgccagatcctaatgcggaagtggtagctttgtcaccaaaaactctattgncaacgaacagatttgtgtgtgaaatttgcaataaagggtttcanagagaccagaatttgcagcttcataganngggtcacaatctaccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0040B13-GHUsw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0040B13.1" temp_strand="+" temp_description="C02HBa0040B13.1  htgs_phase:2 submitted_to_sgn_as:Contig7">
        <position start="107611" stop="109120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107911" g_stop="108551" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108552" i_stop="108683" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108684" g_stop="108820" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="778" r_length="137" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0040B13.1" gen_strand="+" ref_id="SGN-U585919" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0040B13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107911" e_stop="108551"/>
          <exon e_start="108684" e_stop="108820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGTTAAAAAGAGTGAAAACACTAGTATCATACAAGACTTTTCTCTCTCAATTTTTCTACTTTCTCTCTCTAGTTTCCTTGCCGCCGACCACTCAAAATCCCCCCATTTTCACCTTTTTTCCGATCTGGAGTTTCGACCCTATTTCTCTTATTGTTGTAATACATGTGAAGATTTGAGTATTGTAGCCGAAATCTTACTGGGGAACTCACTGTTTTGAGTGGTATAGCAAATCCCATTTGCATTAATTGGAGTTTTTTTTCGCCGGTGAGTGATTTCTTGCCAATTTTTGTATCTGGGTTTTTCTTATCTACTTGGCTTTGAGCTGGTTTTGTATTATGGGTGTTTGCTAATTAGCTAGTCTGAGCTTGTGTTCAGATACACTAGTTGGGTACAGAAAGAAGAAGAAGCAATATTGAATGGTAGATTTGCTAAAAGAAGCGAGTAGGAAGTTTGTTAAGTAGAAATGGTGTAGATTTTTTACATTTTAGGCACTACATAAACCCTAGAAGTATTCTATTTCATACGCCATGAATGATTGCGTGGGCTCTGGTGAAGTGAGTGTATTGTCTTCTGGTGATCAGACAGCTCCTTGTAAAGAAGCAGCAAAGAAAAAACGGAATCTACCTGGAATGCCAGGTAAATTAATTTTAATTTGCAATTTTAAATCAGCTAGGGTTTAGTTATTTAAATCCATTTTGTTGAAGAACCTAGATTTCTATTTCAGCTGAAAATTGAATTTTGGGGCTTTTATGTTATCCTTTGATTTAGATCCTAATGCGGAAGTGGTAGCTTTGTCACCGAAAACTCTATTGGCAACGAACAGATTTGTGTGTGAAATTTGCAATAAAGGGTTTCAGAGAGACCAGAATTTGCAGCTTCATAGAAGGGGTCACAATCTACCTTGG</genome_strand>
        <mrna_strand>TGAAAAGTTAAAAAGAGTGAAAACACTAGTATCATACAAGACTTTTCTCACTCAATTTTTCTACTTTCTCTCTCTAGTTTCCTTGCCGCCGACCACTCAAAATCCCCCCATTTTCACCTTTTTTCCGATCTGGAGTTTCGACCCTATTTCTCTTATTGTTGTAATACATGTGAAGATTTGAGTATTGTAGCCGAAATCTTACTGGGGAACTCACTGTTTTGAGTGGTATAGCAAATCCCATTTGCATTAATTTGAGTTTTTTTTCGCCGGTGAGTGATTTCTTGCCAATTTTTGTATCTGGGTTTTTCTTATCTACTTGGCTTTGAGCTGGTTTTGTATTATGGGTGTTTGCTAATTAGCTAGTCTGAGCTTGTGTTCAGATACACTAGTTGGGTACAGAAAGAAGAAGAAGCAATATTGAATGGTAGATTTGCTAAAAGAAGCGAGTAGGAAGTTTGTTAAGTAGAAATGGTGTAGATTTTTTACATTTTAGGCACTACATAAACCCTAGAAGAATTCTATTTCATACGCCATGAATGATTGCGTGGGCTCTGGTGAAGTGAGTGTATTGTCTTCTGGTGATCAGACAGCTCCTTGTAAAGAAGCAGCAAAGAAAAAACGGAATCTACCTGGAATGCCAG....................................................................................................................................ATCCTAATGCGGAAGTGGTAGCTTTGTCACCAAAAACTCTATTGNCAACGAACAGATTTGTGTGTGAAATTTGCAATAAAGGGTTTCANAGAGACCAGAATTTGCAGCTTCATAGANNGGGTCACAATCTACCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="47101" PGL_stop="46776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47101" e_stop="46776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="47101" e_stop="46776" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47101" stop="46776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCTAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTCCAACTATCACAGTCTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  L  S  N  Y  H  S  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  *  I  K  A  S  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I   </first_frame>
            <second_frame>  G  S  V  L  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  P  T  I  T  V  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  K  L  R  P  V  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  </second_frame>
            <third_frame>   D  L  S  *  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  I  P  F  Q  L  S  Q  S  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  N  *  G  Q  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46968" stop="46777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFPTITVSPTGVETRIGMSSNSQFKLRPVANAEDTYENVEPGSNNTEAIQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="46798" PGL_stop="47437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46798" e_stop="47437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="46798" e_stop="47437" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46798" stop="47437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGACTGTGATAGTTGGAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTACATATTATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACGCCTCAGAGATTATACTACTCAAGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAAACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGTCTGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</gDNA_template>
            <first_frame> I  *  P  W  L  Y  I  F  I  C  I  F  R  I  C  Y  W  P  *  F  K  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  D  C  D  S  W  K  G  I  *  V  L  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  T  Y  Y  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  R  L  Y  Y  S  S  T  F  N  *  V  G  S  G  S  P  *  V  S  G  C  V  S  C  K  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  V  W  Y  S  P  H  F  H  T  S  L  *  N  G  S  S  G  V  K  G  V  K  G  P  T  S  R  V  V  K  *  R  F  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  A  F  A  T  G  L  N  L  N  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  T  V  I  V  G  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  R  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  H  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  R  L  R  D  Y  T  T  Q  V  P  S  I  E  S  V  P  V  V  R  E  F  L  D  V  F  P  A  N  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I </second_frame>
            <third_frame>   L  T  L  A  L  H  F  H  M  Y  L  P  H  L  L  L  A  L  I  *  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  R  L  *  *  L  E  R  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  Y  I  L  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  A  S  E  I  I  L  L  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  S  L  V  L  A  P  F  P  Y  L  L  I  E  W  L  Q  R  S  *  G  S  *  R  P  N  F  K  S  C  *  V  K  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46799" stop="47437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSAFATGLNLNCELLDMPIRVSTPVGETVIVGKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPRTDPLVWEGDYTSTPVHIISFLRAKRMVSKGCLAFLARLRDYTTQVPSIESVPVVREFLDVFPANLPGMPPDRDIDFCIDLESGTRPISIPPYRMAPAELRELKAQLQELLSKGFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="60275" PGL_stop="59591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60275" e_stop="59591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="60275" e_stop="59591" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60275" stop="59591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCATAAGCACCAAATCCTTGCTACAGTTGGTGTTGGATTAACTAAGCTCACATTCATACTGTTATCGACTATCTTGATTGACAGAGTTGGCAGGAGAAAGCTCTTGTTGACGAGTTTAAGTGGTATGGTTGTGACGTTAACAGGACTTGGGGTTTTCTTGACTTTGGCAGAGCACTCCGGTGGCAAACTCATATGGGCTTTGGTTCTTAGCATAATTACAACTTATGGAGTTGTGATGTTTTTCAACATTGGGCTTGGTCCTGTTACTTGGGTATATACCGCTGAGATTTTCCCTCTTAAGTTTAGGGGTTTAGGAGTTGGAATTGGTGTCGCGGTTAACAGGTTGATGAATGCAACAGTTTCTATGAGTTTTCTGTCAATTTCTGCAGCAATTACGACTGGTGGTGCTTTCTTCATGTTTGCTGGGATATCAGTCATCGCTTTGATCTTTTTCTACTTTTTCTTGCCTGAGACTAAAGGAAAGTCTTTGGAAGAAATGGAAGCTCTTTTCACTAGAGGAGGCACATGTTCTAACCATGTTAGCAAACAAGTGGAGATTGCAAAATATTGATTCTTGATCAACTTTTGTGTAGAAAAATATGCCCTTTTTACTGTTGAGATAAATTTTTGTAATCAATCCAGTTATGTATTATTAGTTATAAACATTAAATTACACCTTCTTG</gDNA_template>
            <first_frame> D  H  K  H  Q  I  L  A  T  V  G  V  G  L  T  K  L  T  F  I  L  L  S  T  I  L  I  D  R  V  G  R  R  K  L  L  L  T  S  L  S  G  M  V  V  T  L  T  G  L  G  V  F  L  T  L  A  E  H  S  G  G  K  L  I  W  A  L  V  L  S  I  I  T  T  Y  G  V  V  M  F  F  N  I  G  L  G  P  V  T  W  V  Y  T  A  E  I  F  P  L  K  F  R  G  L  G  V  G  I  G  V  A  V  N  R  L  M  N  A  T  V  S  M  S  F  L  S  I  S  A  A  I  T  T  G  G  A  F  F  M  F  A  G  I  S  V  I  A  L  I  F  F  Y  F  F  L  P  E  T  K  G  K  S  L  E  E  M  E  A  L  F  T  R  G  G  T  C  S  N  H  V  S  K  Q  V  E  I  A  K  Y  *  F  L  I  N  F  C  V  E  K  Y  A  L  F  T  V  E  I  N  F  C  N  Q  S  S  Y  V  L  L  V  I  N  I  K  L  H  L  L  </first_frame>
            <second_frame>  T  I  S  T  K  S  L  L  Q  L  V  L  D  *  L  S  S  H  S  Y  C  Y  R  L  S  *  L  T  E  L  A  G  E  S  S  C  *  R  V  *  V  V  W  L  *  R  *  Q  D  L  G  F  S  *  L  W  Q  S  T  P  V  A  N  S  Y  G  L  W  F  L  A  *  L  Q  L  M  E  L  *  C  F  S  T  L  G  L  V  L  L  L  G  Y  I  P  L  R  F  S  L  L  S  L  G  V  *  E  L  E  L  V  S  R  L  T  G  *  *  M  Q  Q  F  L  *  V  F  C  Q  F  L  Q  Q  L  R  L  V  V  L  S  S  C  L  L  G  Y  Q  S  S  L  *  S  F  S  T  F  S  C  L  R  L  K  E  S  L  W  K  K  W  K  L  F  S  L  E  E  A  H  V  L  T  M  L  A  N  K  W  R  L  Q  N  I  D  S  *  S  T  F  V  *  K  N  M  P  F  L  L  L  R  *  I  F  V  I  N  P  V  M  Y  Y  *  L  *  T  L  N  Y  T  F  L </second_frame>
            <third_frame>   P  *  A  P  N  P  C  Y  S  W  C  W  I  N  *  A  H  I  H  T  V  I  D  Y  L  D  *  Q  S  W  Q  E  K  A  L  V  D  E  F  K  W  Y  G  C  D  V  N  R  T  W  G  F  L  D  F  G  R  A  L  R  W  Q  T  H  M  G  F  G  S  *  H  N  Y  N  L  W  S  C  D  V  F  Q  H  W  A  W  S  C  Y  L  G  I  Y  R  *  D  F  P  S  *  V  *  G  F  R  S  W  N  W  C  R  G  *  Q  V  D  E  C  N  S  F  Y  E  F  S  V  N  F  C  S  N  Y  D  W  W  C  F  L  H  V  C  W  D  I  S  H  R  F  D  L  F  L  L  F  L  A  *  D  *  R  K  V  F  G  R  N  G  S  S  F  H  *  R  R  H  M  F  *  P  C  *  Q  T  S  G  D  C  K  I  L  I  L  D  Q  L  L  C  R  K  I  C  P  F  Y  C  *  D  K  F  L  *  S  I  Q  L  C  I  I  S  Y  K  H  *  I  T  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60275" stop="59703"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DHKHQILATVGVGLTKLTFILLSTILIDRVGRRKLLLTSLSGMVVTLTGLGVFLTLAEHSGGKLIWALVLSIITTYGVVMFFNIGLGPVTWVYTAEIFPLKFRGLGVGIGVAVNRLMNATVSMSFLSISAAITTGGAFFMFAGISVIALIFFYFFLPETKGKSLEEMEALFTRGGTCSNHVSKQVEIAKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="61907" PGL_stop="61040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61907" e_stop="61591"/>
            <exon e_start="61424" e_stop="61040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.230" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="61907" e_stop="61591" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.230">
            <gDNA_intron_boundary i_start="61590" i_stop="61425" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="61424" e_stop="61040" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61907" stop="61591"/>
              <exon start="61424" stop="61040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTCGTAAGTGTAGTGCATGCTCTAAACTAGAAATTATCACAAATTAATTTAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAG : CCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTGAATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTTGTGAAAAAGGAATTCAAAATCAGTGATGCAA</gDNA_template>
            <first_frame> *  F  V  S  V  V  H  A  L  N  *  K  L  S  Q  I  N  L  V  Y  Y  *  K  Y  T  Y  I  V  H  T  I  E  L  W  R  R  L  L  L  E  K  I  E  Q  G  L  I  N  M  P  V  L  V  L  L  L  L  P  *  Y  L  S  S  S  V  M  V  S  F  L  L  L  K  F  F  C  F  F  S  F  Y  Y  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  Q  I  S  K  S  S  C  S :   P  I  N  L  S  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  I  D  I  E  V  I  M  *  P  D  *  S  I  I  T  F  A  F  L  K  *  T  D  *  S  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  R  S  H  Q  V  A  R  L  I  Y  H  H  I  C  F  S  *  I  A  R  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  *  F  Y  V  *  I  Q  I  P  E  *  *  V  E  R  *  F  L  *  K  R  N  S  K  S  V  M  Q </first_frame>
            <second_frame>  D  S  *  V  *  C  M  L  *  T  R  N  Y  H  K  L  I  *  F  T  T  K  N  I  H  T  L  F  I  Q  L  N  Y  G  E  G  Y  C  W  K  K  S  N  K  D  *  *  I  C  L  C  L  C  Y  C  C  F  H  D  I  Y  H  L  R  L  W  *  V  F  Y  F  *  N  S  S  V  S  F  P  F  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  R  S  H  H  V   : A  R  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  *  I  L  K  S  S  C  S  P  I  N  L  S  S  H  L  L  F  L  N  R  L  I  N  L  S  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  T  D  I  E  V  I  R  *  P  D  *  S  I  I  T  F  A  F  L  K  *  R  D  *  S  I  I  A  F  A  F  L  K  *  T  N  D  N  F  M  F  E  F  R  Y  R  S  D  E  W  S  D  D  F  C  E  K  G  I  Q  N  Q  *  C   </second_frame>
            <third_frame>   I  R  K  C  S  A  C  S  K  L  E  I  I  T  N  *  F  S  L  L  L  K  I  Y  I  H  C  S  Y  N  *  I  M  E  K  A  T  A  G  K  N  R  T  R  I  N  K  Y  A  C  A  C  A  I  V  A  S  M  I  S  I  I  F  G  Y  G  K  F  F  T  S  K  I  L  L  F  L  F  L  L  L  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  T  D  I  E  V  I  M  *  :  P  D  *  S  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  *  S  H  H  V  A  R  L  I  Y  H  H  I  C  F  S  *  I  D  *  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  Q  I  S  K  S  S  G  S  P  I  N  L  S  S  H  L  L  F  L  N  S  A  I  N  L  S  S  H  L  L  F  L  N  R  L  M  I  I  L  C  L  N  S  D  T  G  V  M  S  G  A  M  I  F  V  K  K  E  F  K  I  S  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61812" stop="61591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMEKATAGKNRTRINKYACACAIVASMISIIFGYGKFFTSKILLFLFLLLSHLLFLNRLMRSLCLNTDIEVIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61235" stop="61041"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQISKSSGSPINLSSHLLFLNSAINLSSHLLFLNRLMIILCLNSDTGVMSGAMIFVKKEFKISDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61855" e_stop="61041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="61855" e_stop="61041" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61855" stop="61041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTTTACTACTAAAAATATACATACATTGTTCATACAATTGAATTATGGAGAAGGCTACTGCTGGAAAAAATCGAACAAGGATTAATAAATATGCCTGTGCTTGTGCTATTGTTGCTTCCATGATATCTATCATCTTCGGTTATGGTAAGTTTTTTACTTCTAAAATTCTTCTGTTTCTTTTCCTTTTATTATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCATGTAGCCCGATTAATCTATCATTGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGGATATAGATATTGAAGTCATCATGTAGCCCTATTAATCTATCATCGCATTTGCTTTTCTTAAATAGCCCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATATAGATATTGAAGTCATCATGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGACTGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGAGAAGTTTATGTTTGAATACAGATATCGAAGTCATCAGGTAGCCCGATTAATCTATCATCACATTTGCTTTTCTTAAATAGCGCGATTAATCTATCATCGCATTTGCTTTTCTTAAATAGACTAATGATAATTTTATGTTTGAATTCAGATACCGGAGTGATGAGTGGAGCGATGATTTTTGTGAAAAAGGAATTCAAAATCAGTGATGCA</gDNA_template>
            <first_frame> *  F  T  T  K  N  I  H  T  L  F  I  Q  L  N  Y  G  E  G  Y  C  W  K  K  S  N  K  D  *  *  I  C  L  C  L  C  Y  C  C  F  H  D  I  Y  H  L  R  L  W  *  V  F  Y  F  *  N  S  S  V  S  F  P  F  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  R  S  H  H  V  A  R  L  I  Y  H  C  I  C  F  S  *  I  A  R  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  W  I  *  I  L  K  S  S  C  S  P  I  N  L  S  S  H  L  L  F  L  N  S  P  I  N  L  S  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  I  D  I  E  V  I  M  *  P  D  *  S  I  I  T  F  A  F  L  K  *  T  D  *  S  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  R  S  H  Q  V  A  R  L  I  Y  H  H  I  C  F  S  *  I  A  R  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  *  F  Y  V  *  I  Q  I  P  E  *  *  V  E  R  *  F  L  *  K  R  N  S  K  S  V  M   </first_frame>
            <second_frame>  S  L  L  L  K  I  Y  I  H  C  S  Y  N  *  I  M  E  K  A  T  A  G  K  N  R  T  R  I  N  K  Y  A  C  A  C  A  I  V  A  S  M  I  S  I  I  F  G  Y  G  K  F  F  T  S  K  I  L  L  F  L  F  L  L  L  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  T  D  I  E  V  I  M  *  P  D  *  S  I  I  A  F  A  F  L  K  *  P  D  *  S  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  G  Y  R  Y  *  S  H  H  V  A  L  L  I  Y  H  R  I  C  F  S  *  I  A  R  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  *  I  L  K  S  S  C  S  P  I  N  L  S  S  H  L  L  F  L  N  R  L  I  N  L  S  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  N  T  D  I  E  V  I  R  *  P  D  *  S  I  I  T  F  A  F  L  K  *  R  D  *  S  I  I  A  F  A  F  L  K  *  T  N  D  N  F  M  F  E  F  R  Y  R  S  D  E  W  S  D  D  F  C  E  K  G  I  Q  N  Q  *  C  </second_frame>
            <third_frame>   V  Y  Y  *  K  Y  T  Y  I  V  H  T  I  E  L  W  R  R  L  L  L  E  K  I  E  Q  G  L  I  N  M  P  V  L  V  L  L  L  L  P  *  Y  L  S  S  S  V  M  V  S  F  L  L  L  K  F  F  C  F  F  S  F  Y  Y  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  Q  I  S  K  S  S  C  S  P  I  N  L  S  L  H  L  L  F  L  N  S  P  I  N  L  S  S  H  L  L  F  L  N  R  L  M  R  S  L  C  L  D  I  D  I  E  V  I  M  *  P  Y  *  S  I  I  A  F  A  F  L  K  *  P  D  *  S  I  I  A  F  A  F  L  K  *  T  N  E  K  F  M  F  E  Y  R  Y  *  S  H  H  V  A  R  L  I  Y  H  H  I  C  F  S  *  I  D  *  L  I  Y  H  R  I  C  F  S  *  I  D  *  *  E  V  Y  V  *  I  Q  I  S  K  S  S  G  S  P  I  N  L  S  S  H  L  L  F  L  N  S  A  I  N  L  S  S  H  L  L  F  L  N  R  L  M  I  I  L  C  L  N  S  D  T  G  V  M  S  G  A  M  I  F  V  K  K  E  F  K  I  S  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61812" stop="61591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMEKATAGKNRTRINKYACACAIVASMISIIFGYGKFFTSKILLFLFLLLSHLLFLNRLMRSLCLNTDIEVIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61235" stop="61041"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQISKSSGSPINLSSHLLFLNSAINLSSHLLFLNRLMIILCLNSDTGVMSGAMIFVKKEFKISDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="73652" PGL_stop="72009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73652" e_stop="72009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="73652" e_stop="72009" e_length="1644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73652" stop="72009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTAAGTGGATTTGTAACAAAGAGAAAAATTTGAAAAAAGATATTACTTATTTTTTAACTCACTCTAAATGCTTCAAGATTCTCATTTTCTCATAAACCCAGCAACCTTCCGCCGTCCTAAAACCTTTCATTGTTTACCCAAAACCGGCTAAAACCCTAATGTCTTCTTCCATTTCCCTGCGCCTGGCGCGCCACCTCTCAACCTCGGCCGACGCCGCCGCCACCACCGCCACCGCCGCTGCTTCTTCAATAGCCGGCGCGACCATCTCTATCTCCAAAGCAAAATCCAAGCTAAAGTCTGAGCACGATCCAGACAAAGCACTAAAGATTTACTCCTCTGTTTCTAACCATTACACTTCCCCTTTATCCTCCCGTTATGCACAAGAATACACAGTCAAACGCCTCGCTAAATCCCATCGTTTCTCCGACATCGAAGCCTTTCTCGAGTCTCACAAGGATGACAAAAAAATTACCCAGGAACCCTTCCTTTCCTCTATTATTCGTTCGTACGGATTAGCTGGAATGTTTGATCAGGCGCTTAAAACTTATCTTCAAATGGACGATTTAGGTACCCCTAGATCAGCAGTTTCGTTCAACGTGCTTCTTTCAGCTTGTGTGAACTCCAAATTTTATGATCGCGTTCCCCAGCTGTTTGATGAAATGCCAAAGAAGCATGGATTCTTACCTGACAAAGTTTCATATGGTGTATTGATCAGGTCTTACTGTGAAATGGGGAAGCCTGAATTGGCAATGGAGAAACTTAAGGAAATGGAAGAGAAAGGTGTTGAAATTACAGCTGTTACTTTCACAACCATATTGAACTCATTGTACAAGGGAGGAAGGTGTGATGAGGCTGAGAAGGTTTGGAATGAGATGGCGAAGAGAGGTTGCGGTCCGGATGTTGGTGCTTACAATGTAAAGATTATGAACTTTCAGGGTGGTGATCCTGAAGGAGTGAAGGTTTTGATTGAGGAAATGAGCAATGTAGGCTTAAAACCCGACACGATCAGTTACAATTACTTGATGTCTTGTTACTGTAGGAATGGGATGATGGATGAAGCTGAGAAAGTTTATGAGGATTTGGAGACAAAGGGGTGCAATCCAAATGCTTCAACTTTTAGAACTTTGATATTCTATTTGTGTAAGAATGAACAGTTCGAGACGGGGTATAAAGTGTTCAGAGAAAGTGTGAGAGCAAACAAGATTCCGGATGTCAATACACTCAAGTACTTGGTTCATGGTTTGGCGAAGAGTTCAAAGGCGAAAGAAGCAAAAGAAATGATCAGGACAATGAAGAAGAAGTTCCCTGCTAATGTGGTGAAAGTTTGGACCAAGATAGAGGAGGAGCTTGGTTTGGCTAAAGTCGAACTCGGTGATATCAAGTCTAATGAGAGTAATGTTGCGCAGTAATGATTTTGTTCGAGATATAGCTGCTGTAAGCAATCTAGCCAGCTTTATAACTGTTGAGGAAGATTGAATTTTTTTGTTTGTCATAAAGATGTGAGTTAGCACTTGGCGCTAACATTTGTTGTGCCATTTATTTTTGAAAGCTAATATAGATCGTTTACTTGGAAGTTTTGTAGTGCTTTTGAAGATCTGCAAATGTTCAATTCTACGGGATAAATATTTTGTTGCTTCA</gDNA_template>
            <first_frame> T  Q  L  S  G  F  V  T  K  R  K  I  *  K  K  I  L  L  I  F  *  L  T  L  N  A  S  R  F  S  F  S  H  K  P  S  N  L  P  P  S  *  N  L  S  L  F  T  Q  N  R  L  K  P  *  C  L  L  P  F  P  C  A  W  R  A  T  S  Q  P  R  P  T  P  P  P  P  P  P  P  P  L  L  L  Q  *  P  A  R  P  S  L  S  P  K  Q  N  P  S  *  S  L  S  T  I  Q  T  K  H  *  R  F  T  P  L  F  L  T  I  T  L  P  L  Y  P  P  V  M  H  K  N  T  Q  S  N  A  S  L  N  P  I  V  S  P  T  S  K  P  F  S  S  L  T  R  M  T  K  K  L  P  R  N  P  S  F  P  L  L  F  V  R  T  D  *  L  E  C  L  I  R  R  L  K  L  I  F  K  W  T  I  *  V  P  L  D  Q  Q  F  R  S  T  C  F  F  Q  L  V  *  T  P  N  F  M  I  A  F  P  S  C  L  M  K  C  Q  R  S  M  D  S  Y  L  T  K  F  H  M  V  Y  *  S  G  L  T  V  K  W  G  S  L  N  W  Q  W  R  N  L  R  K  W  K  R  K  V  L  K  L  Q  L  L  L  S  Q  P  Y  *  T  H  C  T  R  E  E  G  V  M  R  L  R  R  F  G  M  R  W  R  R  E  V  A  V  R  M  L  V  L  T  M  *  R  L  *  T  F  R  V  V  I  L  K  E  *  R  F  *  L  R  K  *  A  M  *  A  *  N  P  T  R  S  V  T  I  T  *  C  L  V  T  V  G  M  G  *  W  M  K  L  R  K  F  M  R  I  W  R  Q  R  G  A  I  Q  M  L  Q  L  L  E  L  *  Y  S  I  C  V  R  M  N  S  S  R  R  G  I  K  C  S  E  K  V  *  E  Q  T  R  F  R  M  S  I  H  S  S  T  W  F  M  V  W  R  R  V  Q  R  R  K  K  Q  K  K  *  S  G  Q  *  R  R  S  S  L  L  M  W  *  K  F  G  P  R  *  R  R  S  L  V  W  L  K  S  N  S  V  I  S  S  L  M  R  V  M  L  R  S  N  D  F  V  R  D  I  A  A  V  S  N  L  A  S  F  I  T  V  E  E  D  *  I  F  L  F  V  I  K  M  *  V  S  T  W  R  *  H  L  L  C  H  L  F  L  K  A  N  I  D  R  L  L  G  S  F  V  V  L  L  K  I  C  K  C  S  I  L  R  D  K  Y  F  V  A  S </first_frame>
            <second_frame>  P  N  *  V  D  L  *  Q  R  E  K  F  E  K  R  Y  Y  L  F  F  N  S  L  *  M  L  Q  D  S  H  F  L  I  N  P  A  T  F  R  R  P  K  T  F  H  C  L  P  K  T  G  *  N  P  N  V  F  F  H  F  P  A  P  G  A  P  P  L  N  L  G  R  R  R  R  H  H  R  H  R  R  C  F  F  N  S  R  R  D  H  L  Y  L  Q  S  K  I  Q  A  K  V  *  A  R  S  R  Q  S  T  K  D  L  L  L  C  F  *  P  L  H  F  P  F  I  L  P  L  C  T  R  I  H  S  Q  T  P  R  *  I  P  S  F  L  R  H  R  S  L  S  R  V  S  Q  G  *  Q  K  N  Y  P  G  T  L  P  F  L  Y  Y  S  F  V  R  I  S  W  N  V  *  S  G  A  *  N  L  S  S  N  G  R  F  R  Y  P  *  I  S  S  F  V  Q  R  A  S  F  S  L  C  E  L  Q  I  L  *  S  R  S  P  A  V  *  *  N  A  K  E  A  W  I  L  T  *  Q  S  F  I  W  C  I  D  Q  V  L  L  *  N  G  E  A  *  I  G  N  G  E  T  *  G  N  G  R  E  R  C  *  N  Y  S  C  Y  F  H  N  H  I  E  L  I  V  Q  G  R  K  V  *  *  G  *  E  G  L  E  *  D  G  E  E  R  L  R  S  G  C  W  C  L  Q  C  K  D  Y  E  L  S  G  W  *  S  *  R  S  E  G  F  D  *  G  N  E  Q  C  R  L  K  T  R  H  D  Q  L  Q  L  L  D  V  L  L  L  *  E  W  D  D  G  *  S  *  E  S  L  *  G  F  G  D  K  G  V  Q  S  K  C  F  N  F  *  N  F  D  I  L  F  V  *  E  *  T  V  R  D  G  V  *  S  V  Q  R  K  C  E  S  K  Q  D  S  G  C  Q  Y  T  Q  V  L  G  S  W  F  G  E  E  F  K  G  E  R  S  K  R  N  D  Q  D  N  E  E  E  V  P  C  *  C  G  E  S  L  D  Q  D  R  G  G  A  W  F  G  *  S  R  T  R  *  Y  Q  V  *  *  E  *  C  C  A  V  M  I  L  F  E  I  *  L  L  *  A  I  *  P  A  L  *  L  L  R  K  I  E  F  F  C  L  S  *  R  C  E  L  A  L  G  A  N  I  C  C  A  I  Y  F  *  K  L  I  *  I  V  Y  L  E  V  L  *  C  F  *  R  S  A  N  V  Q  F  Y  G  I  N  I  L  L  L   </second_frame>
            <third_frame>   P  I  K  W  I  C  N  K  E  K  N  L  K  K  D  I  T  Y  F  L  T  H  S  K  C  F  K  I  L  I  F  S  *  T  Q  Q  P  S  A  V  L  K  P  F  I  V  Y  P  K  P  A  K  T  L  M  S  S  S  I  S  L  R  L  A  R  H  L  S  T  S  A  D  A  A  A  T  T  A  T  A  A  A  S  S  I  A  G  A  T  I  S  I  S  K  A  K  S  K  L  K  S  E  H  D  P  D  K  A  L  K  I  Y  S  S  V  S  N  H  Y  T  S  P  L  S  S  R  Y  A  Q  E  Y  T  V  K  R  L  A  K  S  H  R  F  S  D  I  E  A  F  L  E  S  H  K  D  D  K  K  I  T  Q  E  P  F  L  S  S  I  I  R  S  Y  G  L  A  G  M  F  D  Q  A  L  K  T  Y  L  Q  M  D  D  L  G  T  P  R  S  A  V  S  F  N  V  L  L  S  A  C  V  N  S  K  F  Y  D  R  V  P  Q  L  F  D  E  M  P  K  K  H  G  F  L  P  D  K  V  S  Y  G  V  L  I  R  S  Y  C  E  M  G  K  P  E  L  A  M  E  K  L  K  E  M  E  E  K  G  V  E  I  T  A  V  T  F  T  T  I  L  N  S  L  Y  K  G  G  R  C  D  E  A  E  K  V  W  N  E  M  A  K  R  G  C  G  P  D  V  G  A  Y  N  V  K  I  M  N  F  Q  G  G  D  P  E  G  V  K  V  L  I  E  E  M  S  N  V  G  L  K  P  D  T  I  S  Y  N  Y  L  M  S  C  Y  C  R  N  G  M  M  D  E  A  E  K  V  Y  E  D  L  E  T  K  G  C  N  P  N  A  S  T  F  R  T  L  I  F  Y  L  C  K  N  E  Q  F  E  T  G  Y  K  V  F  R  E  S  V  R  A  N  K  I  P  D  V  N  T  L  K  Y  L  V  H  G  L  A  K  S  S  K  A  K  E  A  K  E  M  I  R  T  M  K  K  K  F  P  A  N  V  V  K  V  W  T  K  I  E  E  E  L  G  L  A  K  V  E  L  G  D  I  K  S  N  E  S  N  V  A  Q  *  *  F  C  S  R  Y  S  C  C  K  Q  S  S  Q  L  Y  N  C  *  G  R  L  N  F  F  V  C  H  K  D  V  S  *  H  L  A  L  T  F  V  V  P  F  I  F  E  S  *  Y  R  S  F  T  W  K  F  C  S  A  F  E  D  L  Q  M  F  N  S  T  G  *  I  F  C  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73551" stop="72238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQQPSAVLKPFIVYPKPAKTLMSSSISLRLARHLSTSADAAATTATAAASSIAGATISISKAKSKLKSEHDPDKALKIYSSVSNHYTSPLSSRYAQEYTVKRLAKSHRFSDIEAFLESHKDDKKITQEPFLSSIIRSYGLAGMFDQALKTYLQMDDLGTPRSAVSFNVLLSACVNSKFYDRVPQLFDEMPKKHGFLPDKVSYGVLIRSYCEMGKPELAMEKLKEMEEKGVEITAVTFTTILNSLYKGGRCDEAEKVWNEMAKRGCGPDVGAYNVKIMNFQGGDPEGVKVLIEEMSNVGLKPDTISYNYLMSCYCRNGMMDEAEKVYEDLETKGCNPNASTFRTLIFYLCKNEQFETGYKVFRESVRANKIPDVNTLKYLVHGLAKSSKAKEAKEMIRTMKKKFPANVVKVWTKIEEELGLAKVELGDIKSNESNVAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="78257" PGL_stop="77618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78257" e_stop="77618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="78257" e_stop="77618" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78257" stop="77618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCTAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCATGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCTTTCCCGATAGTGAACCAACAACCTACTCCGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTATAATCAGGAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCCGGTACTATCACTCGCCGTGCGCAACAATTGGCTCATTAATCAGTTGGATGTTTCCAATGCTTTTCTCCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGTTATGTTGATATCCC</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  L  A  R  S  V  L  G  P  S  Q  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  M  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  P  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  V  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  I  I  R  S  M  S  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  R  Y  Y  H  S  P  C  A  T  I  G  S  L  I  S  W  M  F  P  M  L  F  S  M  A  C  L  M  K  L  S  T  *  R  N  H  R  V  M  L  I  S  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  *  P  D  P  F  W  V  L  P  S  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  L  S  R  *  *  T  N  N  L  L  R  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  *  S  G  V  *  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  I  T  R  R  A  Q  Q  L  A  H  *  S  V  G  C  F  Q  C  F  S  P  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  Y  P </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  H  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  F  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  E  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  P  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78255" stop="77620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPESPPPVPPPNTHPMLTHGKAGIFKPKTFQATILPNTPFPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYELDYSETFSPVIRQETIRPVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="84676" PGL_stop="94122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84676" e_stop="84975"/>
            <exon e_start="86445" e_stop="86689"/>
            <exon e_start="86887" e_stop="86994"/>
            <exon e_start="88181" e_stop="88251"/>
            <exon e_start="88856" e_stop="88926"/>
            <exon e_start="89018" e_stop="89062"/>
            <exon e_start="89142" e_stop="89201"/>
            <exon e_start="91864" e_stop="91924"/>
            <exon e_start="92011" e_stop="92123"/>
            <exon e_start="92536" e_stop="92982"/>
            <exon e_start="93095" e_stop="93230"/>
            <exon e_start="93325" e_stop="93392"/>
            <exon e_start="93685" e_stop="94122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="84676" e_stop="84975" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84976" i_stop="86444" i_length="1469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86445" e_stop="86689" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="86690" i_stop="86886" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86887" e_stop="86994" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="86995" i_stop="88180" i_length="1186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88181" e_stop="88251" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88252" i_stop="88855" i_length="604"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88856" e_stop="88926" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88927" i_stop="89017" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89018" e_stop="89062" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.965">
            <gDNA_intron_boundary i_start="89063" i_stop="89141" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89142" e_stop="89201" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.922">
            <gDNA_intron_boundary i_start="89202" i_stop="91863" i_length="2662"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91864" e_stop="91924" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91925" i_stop="92010" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92011" e_stop="92123" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92124" i_stop="92535" i_length="412"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92536" e_stop="92982" e_length="447"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="92983" i_stop="93094" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="93095" e_stop="93230" e_length="136"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93231" i_stop="93324" i_length="94"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93325" e_stop="93392" e_length="68"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93393" i_stop="93684" i_length="292"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="93685" e_stop="94122" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84676" stop="84975"/>
              <exon start="86445" stop="86689"/>
              <exon start="86887" stop="86994"/>
              <exon start="88181" stop="88251"/>
              <exon start="88856" stop="88926"/>
              <exon start="89018" stop="89062"/>
              <exon start="89142" stop="89201"/>
              <exon start="91864" stop="91924"/>
              <exon start="92011" stop="92123"/>
              <exon start="92536" stop="92982"/>
              <exon start="93095" stop="93230"/>
              <exon start="93325" stop="93392"/>
              <exon start="93685" stop="94122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84751" stop="84975"/>
              <exon start="86445" stop="86689"/>
              <exon start="86887" stop="86924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAAAAAAATAAAATTTAGTTACGTTTGTACTAAACAATCTCTCTCACCCAACTTGGAGCCCTAGTTTATGTGTTCTGAACTCCGAACTCCATCAACAACGCAGAGGATCGAACAAGGCGAAGCAAAGCACAATTCAGTAGAAAGCTACCTTCACTGAGAGTTACAGAAGCCCTAGCCATGCCGGACTATGAAGCCAATGGAGAAGACATAGACAATTCCGGCTCTTCTCCCCTTCCCAAATCCAGAAGTAGCCATGGCGGCACTAATCCCGATAATTTCACCGACTCCAAGCCTCAG : CATAGTTCTCGTGAATATGAAAAAGATAAGAGCTCGTCAAGAAGCAGGGAAAAGGATAGGGAGAAAGGGCGTGATAGGGACCGTGACAGGGGCAGGGAAAGAGACAAAGACAGGGACAGAGAGAGGGACAAGGACCGTGATCGTCATCACAGAGATCGTCATAGGGATCGGAGTGACAGAAGGGAGAGGGAGAGGACCAGAGATAGAGATGATGATGAACGTCATCGAACTCGAGATTATGACAA : GCAAAGAGATCATGACAAAGATAGAGAGAGTCGGCATAGACACAGGTCTCGTTCAAGGGGTAGATCTGAGCATAAATCAAGGTCTCGATCTCGTTCTCGATCCAAGAG : CAAAAGGATTAGTGGTTTTGATATGGCACCTCCTACCACTGCAATGTTACCTGGTGCTACAGCTGCTGCAG : GTCAAGTGCCCGGGACCAGCCCAGGAATTCCTGGAATGTTGCCCAACATGTTTCCTTTAACATCGGGCCCG : TTTGGAGCTCTTCCTGTTATGCCGATCCAGGCAATGACACAACAG : GCTACAAGGCATGCCCGGCGAGTTTATGTCGGTGGACTTCCTGCTACTTCAAATGAACAG : TCTGTTGCGACCTTCTTTAGTCATGTTATGTCTGCAATTGGAGGAAATACAGCTGGTCCAG : GTGATGCTGTTGTCAATGTCTATATAAACTATGAGAAGAAGTTTGCTTTTGTTGAAATGAGATCTGTAGAGGAAGCTAGTAATGCCATGGCATTGGATGGCATCATATTTGAG : GGTGCACCTTGTAAGGTCAGAAGACCCAGTGATTACAACCCTTCTCTGGCTGCTACTCTTGGTCCTAGCCAACCAAACCCAAACCTCAACCTGGCAGCTGTTGGATTGTCACCAGGTTCTGCAGGAGGGCTTGAAGGCCCTGATCGTATTTTTGTTGGTGGTTTGCCCTACTATTTCACAGAAGCACAGATTAGGGAGCTGTTAGAGTCTTTTGGTGCACTTAGAGGATTCGATTTGGTCAAAGATAGAGAAACAGGGAACTCAAAAGGCTATGCCTTTTGTGTCTATCAGGATGTTTCCGTTACTGATATTGCTTGTGCAGCTCTCAATGGGATTAAGATGGGTGATAAAACCCTTACTGTTAGGCGTGCTAACCAGGGTACAACACAACCTAAGCCTGAGCAAGAGAGTGTATTGTTGCATGCACAACAGCAGATAGCTTTGCAG : AGACTTATGTTACAACCTGGTGCATTAGCCACAAAGGTTTTGTGTTTAACACAAGTTGTTGAGGTAGATGAGCTCAGTAATGACGAGGACTATCAAGATATTTTAGAAGACATGAGAACTGAATGTGGAAAATTTG : GTCCACTGGTGAATGTAGTAATTCCACGTCCAAGTCCTGATGGTGAGCATGCACCAGGGGTTGGAAAG : GTATTTTTGGAGTATGGAGATGTGGAGAGTGCCAGCAAAGCTCGGCAAAGTTTGAATGGAAGAAAATTTGGTGGCAACCAAGTTATAGCTGTCTTCTATCCAGAAAACAAGTTCTATGAAGGGGACTATGATGGTTAGTTGTATCGTATCCTCTTTGAGTTGTCAGAAGTGCTCAGCAAGTCTTGTGTTCTTTTATGGCTTATAGGAATCACCGCGTTGGACTAGTGCTAGATGTAAAACTCGTTTCTGCTTTCCTTTTCGGAGCATTGTTTGTTTTATTCTGAATTATATCCACCTATTTAGGTTTGATTTTTGTGTTGCTGGTGGTAGATAGTTTTTGATAGCCTTAAATATGAAGACTTTGGGGTGCTTGTCAACAGTGTGACAATTGATGCAAATACAGACCCAAGTCTTCATACTATTTTATTTCTACTTCTG</gDNA_template>
            <first_frame> N  *  K  N  K  I  *  L  R  L  Y  *  T  I  S  L  T  Q  L  G  A  L  V  Y  V  F  *  T  P  N  S  I  N  N  A  E  D  R  T  R  R  S  K  A  Q  F  S  R  K  L  P  S  L  R  V  T  E  A  L  A  M  P  D  Y  E  A  N  G  E  D  I  D  N  S  G  S  S  P  L  P  K  S  R  S  S  H  G  G  T  N  P  D  N  F  T  D  S  K  P  Q  :  H  S  S  R  E  Y  E  K  D  K  S  S  S  R  S  R  E  K  D  R  E  K  G  R  D  R  D  R  D  R  G  R  E  R  D  K  D  R  D  R  E  R  D  K  D  R  D  R  H  H  R  D  R  H  R  D  R  S  D  R  R  E  R  E  R  T  R  D  R  D  D  D  E  R  H  R  T  R  D  Y  D  K :   Q  R  D  H  D  K  D  R  E  S  R  H  R  H  R  S  R  S  R  G  R  S  E  H  K  S  R  S  R  S  R  S  R  S  K  S :   K  R  I  S  G  F  D  M  A  P  P  T  T  A  M  L  P  G  A  T  A  A  A   : G  Q  V  P  G  T  S  P  G  I  P  G  M  L  P  N  M  F  P  L  T  S  G  P  :  F  G  A  L  P  V  M  P  I  Q  A  M  T  Q  Q  :  A  T  R  H  A  R  R  V  Y  V  G  G  L  P  A  T  S  N  E  Q  :  S  V  A  T  F  F  S  H  V  M  S  A  I  G  G  N  T  A  G  P   : G  D  A  V  V  N  V  Y  I  N  Y  E  K  K  F  A  F  V  E  M  R  S  V  E  E  A  S  N  A  M  A  L  D  G  I  I  F  E  :  G  A  P  C  K  V  R  R  P  S  D  Y  N  P  S  L  A  A  T  L  G  P  S  Q  P  N  P  N  L  N  L  A  A  V  G  L  S  P  G  S  A  G  G  L  E  G  P  D  R  I  F  V  G  G  L  P  Y  Y  F  T  E  A  Q  I  R  E  L  L  E  S  F  G  A  L  R  G  F  D  L  V  K  D  R  E  T  G  N  S  K  G  Y  A  F  C  V  Y  Q  D  V  S  V  T  D  I  A  C  A  A  L  N  G  I  K  M  G  D  K  T  L  T  V  R  R  A  N  Q  G  T  T  Q  P  K  P  E  Q  E  S  V  L  L  H  A  Q  Q  Q  I  A  L  Q  :  R  L  M  L  Q  P  G  A  L  A  T  K  V  L  C  L  T  Q  V  V  E  V  D  E  L  S  N  D  E  D  Y  Q  D  I  L  E  D  M  R  T  E  C  G  K  F   : G  P  L  V  N  V  V  I  P  R  P  S  P  D  G  E  H  A  P  G  V  G  K  :  V  F  L  E  Y  G  D  V  E  S  A  S  K  A  R  Q  S  L  N  G  R  K  F  G  G  N  Q  V  I  A  V  F  Y  P  E  N  K  F  Y  E  G  D  Y  D  G  *  L  Y  R  I  L  F  E  L  S  E  V  L  S  K  S  C  V  L  L  W  L  I  G  I  T  A  L  D  *  C  *  M  *  N  S  F  L  L  S  F  S  E  H  C  L  F  Y  S  E  L  Y  P  P  I  *  V  *  F  L  C  C  W  W  *  I  V  F  D  S  L  K  Y  E  D  F  G  V  L  V  N  S  V  T  I  D  A  N  T  D  P  S  L  H  T  I  L  F  L  L  L </first_frame>
            <second_frame>  I  K  K  I  K  F  S  Y  V  C  T  K  Q  S  L  S  P  N  L  E  P  *  F  M  C  S  E  L  R  T  P  S  T  T  Q  R  I  E  Q  G  E  A  K  H  N  S  V  E  S  Y  L  H  *  E  L  Q  K  P  *  P  C  R  T  M  K  P  M  E  K  T  *  T  I  P  A  L  L  P  F  P  N  P  E  V  A  M  A  A  L  I  P  I  I  S  P  T  P  S  L  S :   I  V  L  V  N  M  K  K  I  R  A  R  Q  E  A  G  K  R  I  G  R  K  G  V  I  G  T  V  T  G  A  G  K  E  T  K  T  G  T  E  R  G  T  R  T  V  I  V  I  T  E  I  V  I  G  I  G  V  T  E  G  R  G  R  G  P  E  I  E  M  M  M  N  V  I  E  L  E  I  M  T   : S  K  E  I  M  T  K  I  E  R  V  G  I  D  T  G  L  V  Q  G  V  D  L  S  I  N  Q  G  L  D  L  V  L  D  P  R   : A  K  G  L  V  V  L  I  W  H  L  L  P  L  Q  C  Y  L  V  L  Q  L  L  Q  :  V  K  C  P  G  P  A  Q  E  F  L  E  C  C  P  T  C  F  L  *  H  R  A  R :   L  E  L  F  L  L  C  R  S  R  Q  *  H  N  R :   L  Q  G  M  P  G  E  F  M  S  V  D  F  L  L  L  Q  M  N  S :   L  L  R  P  S  L  V  M  L  C  L  Q  L  E  E  I  Q  L  V  Q  :  V  M  L  L  S  M  S  I  *  T  M  R  R  S  L  L  L  L  K  *  D  L  *  R  K  L  V  M  P  W  H  W  M  A  S  Y  L  R :   V  H  L  V  R  S  E  D  P  V  I  T  T  L  L  W  L  L  L  L  V  L  A  N  Q  T  Q  T  S  T  W  Q  L  L  D  C  H  Q  V  L  Q  E  G  L  K  A  L  I  V  F  L  L  V  V  C  P  T  I  S  Q  K  H  R  L  G  S  C  *  S  L  L  V  H  L  E  D  S  I  W  S  K  I  E  K  Q  G  T  Q  K  A  M  P  F  V  S  I  R  M  F  P  L  L  I  L  L  V  Q  L  S  M  G  L  R  W  V  I  K  P  L  L  L  G  V  L  T  R  V  Q  H  N  L  S  L  S  K  R  V  Y  C  C  M  H  N  S  R  *  L  C  R :   D  L  C  Y  N  L  V  H  *  P  Q  R  F  C  V  *  H  K  L  L  R  *  M  S  S  V  M  T  R  T  I  K  I  F  *  K  T  *  E  L  N  V  E  N  L  :  V  H  W  *  M  *  *  F  H  V  Q  V  L  M  V  S  M  H  Q  G  L  E  R :   Y  F  W  S  M  E  M  W  R  V  P  A  K  L  G  K  V  *  M  E  E  N  L  V  A  T  K  L  *  L  S  S  I  Q  K  T  S  S  M  K  G  T  M  M  V  S  C  I  V  S  S  L  S  C  Q  K  C  S  A  S  L  V  F  F  Y  G  L  *  E  S  P  R  W  T  S  A  R  C  K  T  R  F  C  F  P  F  R  S  I  V  C  F  I  L  N  Y  I  H  L  F  R  F  D  F  C  V  A  G  G  R  *  F  L  I  A  L  N  M  K  T  L  G  C  L  S  T  V  *  Q  L  M  Q  I  Q  T  Q  V  F  I  L  F  Y  F  Y  F   </second_frame>
            <third_frame>   L  K  K  *  N  L  V  T  F  V  L  N  N  L  S  H  P  T  W  S  P  S  L  C  V  L  N  S  E  L  H  Q  Q  R  R  G  S  N  K  A  K  Q  S  T  I  Q  *  K  A  T  F  T  E  S  Y  R  S  P  S  H  A  G  L  *  S  Q  W  R  R  H  R  Q  F  R  L  F  S  P  S  Q  I  Q  K  *  P  W  R  H  *  S  R  *  F  H  R  L  Q  A  S   : A  *  F  S  *  I  *  K  R  *  E  L  V  K  K  Q  G  K  G  *  G  E  R  A  *  *  G  P  *  Q  G  Q  G  K  R  Q  R  Q  G  Q  R  E  G  Q  G  P  *  S  S  S  Q  R  S  S  *  G  S  E  *  Q  K  G  E  G  E  D  Q  R  *  R  *  *  *  T  S  S  N  S  R  L  *  Q  :  A  K  R  S  *  Q  R  *  R  E  S  A  *  T  Q  V  S  F  K  G  *  I  *  A  *  I  K  V  S  I  S  F  S  I  Q  E  :  Q  K  D  *  W  F  *  Y  G  T  S  Y  H  C  N  V  T  W  C  Y  S  C  C  R :   S  S  A  R  D  Q  P  R  N  S  W  N  V  A  Q  H  V  S  F  N  I  G  P   : V  W  S  S  S  C  Y  A  D  P  G  N  D  T  T   : G  Y  K  A  C  P  A  S  L  C  R  W  T  S  C  Y  F  K  *  T   : V  C  C  D  L  L  *  S  C  Y  V  C  N  W  R  K  Y  S  W  S  R :   *  C  C  C  Q  C  L  Y  K  L  *  E  E  V  C  F  C  *  N  E  I  C  R  G  S  *  *  C  H  G  I  G  W  H  H  I  *   : G  C  T  L  *  G  Q  K  T  Q  *  L  Q  P  F  S  G  C  Y  S  W  S  *  P  T  K  P  K  P  Q  P  G  S  C  W  I  V  T  R  F  C  R  R  A  *  R  P  *  S  Y  F  C  W  W  F  A  L  L  F  H  R  S  T  D  *  G  A  V  R  V  F  W  C  T  *  R  I  R  F  G  Q  R  *  R  N  R  E  L  K  R  L  C  L  L  C  L  S  G  C  F  R  Y  *  Y  C  L  C  S  S  Q  W  D  *  D  G  *  *  N  P  Y  C  *  A  C  *  P  G  Y  N  T  T  *  A  *  A  R  E  C  I  V  A  C  T  T  A  D  S  F  A   : E  T  Y  V  T  T  W  C  I  S  H  K  G  F  V  F  N  T  S  C  *  G  R  *  A  Q  *  *  R  G  L  S  R  Y  F  R  R  H  E  N  *  M  W  K  I  W :   S  T  G  E  C  S  N  S  T  S  K  S  *  W  *  A  C  T  R  G  W  K   : G  I  F  G  V  W  R  C  G  E  C  Q  Q  S  S  A  K  F  E  W  K  K  I  W  W  Q  P  S  Y  S  C  L  L  S  R  K  Q  V  L  *  R  G  L  *  W  L  V  V  S  Y  P  L  *  V  V  R  S  A  Q  Q  V  L  C  S  F  M  A  Y  R  N  H  R  V  G  L  V  L  D  V  K  L  V  S  A  F  L  F  G  A  L  F  V  L  F  *  I  I  S  T  Y  L  G  L  I  F  V  L  L  V  V  D  S  F  *  *  P  *  I  *  R  L  W  G  A  C  Q  Q  C  D  N  *  C  K  Y  R  P  K  S  S  Y  Y  F  I  S  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84757" stop="84975"/>
                    <exon start="86445" stop="86689"/>
                    <exon start="86887" stop="86994"/>
                    <exon start="88181" stop="88251"/>
                    <exon start="88856" stop="88926"/>
                    <exon start="89018" stop="89062"/>
                    <exon start="89142" stop="89201"/>
                    <exon start="91864" stop="91924"/>
                    <exon start="92011" stop="92123"/>
                    <exon start="92536" stop="92982"/>
                    <exon start="93095" stop="93230"/>
                    <exon start="93325" stop="93392"/>
                    <exon start="93685" stop="93822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNSINNAEDRTRRSKAQFSRKLPSLRVTEALAMPDYEANGEDIDNSGSSPLPKSRSSHGGTNPDNFTDSKPQHSSREYEKDKSSSRSREKDREKGRDRDRDRGRERDKDRDRERDKDRDRHHRDRHRDRSDRRERERTRDRDDDERHRTRDYDKQRDHDKDRESRHRHRSRSRGRSEHKSRSRSRSRSKSKRISGFDMAPPTTAMLPGATAAAGQVPGTSPGIPGMLPNMFPLTSGPFGALPVMPIQAMTQQATRHARRVYVGGLPATSNEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPGALATKVLCLTQVVEVDELSNDEDYQDILEDMRTECGKFGPLVNVVIPRPSPDGEHAPGVGKVFLEYGDVESASKARQSLNGRKFGGNQVIAVFYPENKFYEGDYDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="96259" PGL_stop="101592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96259" e_stop="96404"/>
            <exon e_start="96539" e_stop="96611"/>
            <exon e_start="101317" e_stop="101592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.959"/>
          <exon-intron don_prob="0.987" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="96259" e_stop="96404" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96405" i_stop="96538" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96539" e_stop="96611" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.953">
            <gDNA_intron_boundary i_start="96612" i_stop="101316" i_length="4705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101317" e_stop="101592" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96259" stop="96404"/>
              <exon start="96539" stop="96611"/>
              <exon start="101317" stop="101592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCAAATTCATCATTTGTTCTTCATATTTCACATTTTTTTTCTGTTTAAACGGAGAAAAATGAATTGGGTTCAACGGAAAATTTATCTCTACAATGTCACTTTTGGTTTGTACATGCTCGACTGGTGGGAACGTTGTCTCTTCA : ATATTTTGGTGCTTGTGTTGCTATGGTTTATGTGTTACAACGGGTTTCGATTTGCTTCTGAGCTCTTCAATAG : GCAAATGTGGTGAAAGTTCATCATCTGTGTCCTATATGCATGTTTTGGCATTTAACTTTTAAAGTTGTGAAATTGTTTGCTGTGCCATGGATATAGTTGGCTTTGTATGAATTCATATTACTAGAAAAATACGTCGTTCTTTTCTTATTCTTTACCAATAGATGATATTTATTGTAATAGTTCGAACAATCAATCATAAATTCAAGTTGAATTTCTTGATTGTTGTAAGCAATGCTTCGAAATTAGCTTTATTAATTTGTGAAGTTCTTCTTTCCC</gDNA_template>
            <first_frame> Q  A  N  S  S  F  V  L  H  I  S  H  F  F  S  V  *  T  E  K  N  E  L  G  S  T  E  N  L  S  L  Q  C  H  F  W  F  V  H  A  R  L  V  G  T  L  S  L  Q :   Y  F  G  A  C  V  A  M  V  Y  V  L  Q  R  V  S  I  C  F  *  A  L  Q  *  :  A  N  V  V  K  V  H  H  L  C  P  I  C  M  F  W  H  L  T  F  K  V  V  K  L  F  A  V  P  W  I  *  L  A  L  Y  E  F  I  L  L  E  K  Y  V  V  L  F  L  F  F  T  N  R  *  Y  L  L  *  *  F  E  Q  S  I  I  N  S  S  *  I  S  *  L  L  *  A  M  L  R  N  *  L  Y  *  F  V  K  F  F  F  P </first_frame>
            <second_frame>  K  Q  I  H  H  L  F  F  I  F  H  I  F  F  L  F  K  R  R  K  M  N  W  V  Q  R  K  I  Y  L  Y  N  V  T  F  G  L  Y  M  L  D  W  W  E  R  C  L  F   : N  I  L  V  L  V  L  L  W  F  M  C  Y  N  G  F  R  F  A  S  E  L  F  N  R :   Q  M  W  *  K  F  I  I  C  V  L  Y  A  C  F  G  I  *  L  L  K  L  *  N  C  L  L  C  H  G  Y  S  W  L  C  M  N  S  Y  Y  *  K  N  T  S  F  F  S  Y  S  L  P  I  D  D  I  Y  C  N  S  S  N  N  Q  S  *  I  Q  V  E  F  L  D  C  C  K  Q  C  F  E  I  S  F  I  N  L  *  S  S  S  F   </second_frame>
            <third_frame>   S  K  F  I  I  C  S  S  Y  F  T  F  F  F  C  L  N  G  E  K  *  I  G  F  N  G  K  F  I  S  T  M  S  L  L  V  C  T  C  S  T  G  G  N  V  V  S  S  :  I  F  W  C  L  C  C  Y  G  L  C  V  T  T  G  F  D  L  L  L  S  S  S  I   : G  K  C  G  E  S  S  S  S  V  S  Y  M  H  V  L  A  F  N  F  *  S  C  E  I  V  C  C  A  M  D  I  V  G  F  V  *  I  H  I  T  R  K  I  R  R  S  F  L  I  L  Y  Q  *  M  I  F  I  V  I  V  R  T  I  N  H  K  F  K  L  N  F  L  I  V  V  S  N  A  S  K  L  A  L  L  I  C  E  V  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96260" stop="96404"/>
                    <exon start="96539" stop="96611"/>
                    <exon start="101317" stop="101329"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQIHHLFFIFHIFFLFKRRKMNWVQRKIYLYNVTFGLYMLDWWERCLFNILVLVLLWFMCYNGFRFASELFNRQMW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96324" stop="96404"/>
                    <exon start="96539" stop="96611"/>
                    <exon start="101317" stop="101378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFNGKFISTMSLLVCTCSTGGNVVSSIFWCLCCYGLCVTTGFDLLLSSSIGKCGESSSSVSYMHVLAFNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="107911" PGL_stop="108820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107911" e_stop="108551"/>
            <exon e_start="108684" e_stop="108820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.995"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="107911" e_stop="108551" e_length="641"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="108552" i_stop="108683" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="108684" e_stop="108820" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107911" stop="108551"/>
              <exon start="108684" stop="108820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAAGTTAAAAAGAGTGAAAACACTAGTATCATACAAGACTTTTCTCTCTCAATTTTTCTACTTTCTCTCTCTAGTTTCCTTGCCGCCGACCACTCAAAATCCCCCCATTTTCACCTTTTTTCCGATCTGGAGTTTCGACCCTATTTCTCTTATTGTTGTAATACATGTGAAGATTTGAGTATTGTAGCCGAAATCTTACTGGGGAACTCACTGTTTTGAGTGGTATAGCAAATCCCATTTGCATTAATTGGAGTTTTTTTTCGCCGGTGAGTGATTTCTTGCCAATTTTTGTATCTGGGTTTTTCTTATCTACTTGGCTTTGAGCTGGTTTTGTATTATGGGTGTTTGCTAATTAGCTAGTCTGAGCTTGTGTTCAGATACACTAGTTGGGTACAGAAAGAAGAAGAAGCAATATTGAATGGTAGATTTGCTAAAAGAAGCGAGTAGGAAGTTTGTTAAGTAGAAATGGTGTAGATTTTTTACATTTTAGGCACTACATAAACCCTAGAAGTATTCTATTTCATACGCCATGAATGATTGCGTGGGCTCTGGTGAAGTGAGTGTATTGTCTTCTGGTGATCAGACAGCTCCTTGTAAAGAAGCAGCAAAGAAAAAACGGAATCTACCTGGAATGCCAG : ATCCTAATGCGGAAGTGGTAGCTTTGTCACCGAAAACTCTATTGGCAACGAACAGATTTGTGTGTGAAATTTGCAATAAAGGGTTTCAGAGAGACCAGAATTTGCAGCTTCATAGAAGGGGTCACAATCTACCTTGG</gDNA_template>
            <first_frame> *  K  V  K  K  S  E  N  T  S  I  I  Q  D  F  S  L  S  I  F  L  L  S  L  S  S  F  L  A  A  D  H  S  K  S  P  H  F  H  L  F  S  D  L  E  F  R  P  Y  F  S  Y  C  C  N  T  C  E  D  L  S  I  V  A  E  I  L  L  G  N  S  L  F  *  V  V  *  Q  I  P  F  A  L  I  G  V  F  F  R  R  *  V  I  S  C  Q  F  L  Y  L  G  F  S  Y  L  L  G  F  E  L  V  L  Y  Y  G  C  L  L  I  S  *  S  E  L  V  F  R  Y  T  S  W  V  Q  K  E  E  E  A  I  L  N  G  R  F  A  K  R  S  E  *  E  V  C  *  V  E  M  V  *  I  F  Y  I  L  G  T  T  *  T  L  E  V  F  Y  F  I  R  H  E  *  L  R  G  L  W  *  S  E  C  I  V  F  W  *  S  D  S  S  L  *  R  S  S  K  E  K  T  E  S  T  W  N  A  R :   S  *  C  G  S  G  S  F  V  T  E  N  S  I  G  N  E  Q  I  C  V  *  N  L  Q  *  R  V  S  E  R  P  E  F  A  A  S  *  K  G  S  Q  S  T  L  </first_frame>
            <second_frame>  E  K  L  K  R  V  K  T  L  V  S  Y  K  T  F  L  S  Q  F  F  Y  F  L  S  L  V  S  L  P  P  T  T  Q  N  P  P  I  F  T  F  F  P  I  W  S  F  D  P  I  S  L  I  V  V  I  H  V  K  I  *  V  L  *  P  K  S  Y  W  G  T  H  C  F  E  W  Y  S  K  S  H  L  H  *  L  E  F  F  F  A  G  E  *  F  L  A  N  F  C  I  W  V  F  L  I  Y  L  A  L  S  W  F  C  I  M  G  V  C  *  L  A  S  L  S  L  C  S  D  T  L  V  G  Y  R  K  K  K  K  Q  Y  *  M  V  D  L  L  K  E  A  S  R  K  F  V  K  *  K  W  C  R  F  F  T  F  *  A  L  H  K  P  *  K  Y  S  I  S  Y  A  M  N  D  C  V  G  S  G  E  V  S  V  L  S  S  G  D  Q  T  A  P  C  K  E  A  A  K  K  K  R  N  L  P  G  M  P   : D  P  N  A  E  V  V  A  L  S  P  K  T  L  L  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W </second_frame>
            <third_frame>   K  S  *  K  E  *  K  H  *  Y  H  T  R  L  F  S  L  N  F  S  T  F  S  L  *  F  P  C  R  R  P  L  K  I  P  P  F  S  P  F  F  R  S  G  V  S  T  L  F  L  L  L  L  *  Y  M  *  R  F  E  Y  C  S  R  N  L  T  G  E  L  T  V  L  S  G  I  A  N  P  I  C  I  N  W  S  F  F  S  P  V  S  D  F  L  P  I  F  V  S  G  F  F  L  S  T  W  L  *  A  G  F  V  L  W  V  F  A  N  *  L  V  *  A  C  V  Q  I  H  *  L  G  T  E  R  R  R  S  N  I  E  W  *  I  C  *  K  K  R  V  G  S  L  L  S  R  N  G  V  D  F  L  H  F  R  H  Y  I  N  P  R  S  I  L  F  H  T  P  *  M  I  A  W  A  L  V  K  *  V  Y  C  L  L  V  I  R  Q  L  L  V  K  K  Q  Q  R  K  N  G  I  Y  L  E  C  Q  :  I  L  M  R  K  W  *  L  C  H  R  K  L  Y  W  Q  R  T  D  L  C  V  K  F  A  I  K  G  F  R  E  T  R  I  C  S  F  I  E  G  V  T  I  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108422" stop="108551"/>
                    <exon start="108684" stop="108820"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYSISYAMNDCVGSGEVSVLSSGDQTAPCKEAAKKKRNLPGMPDPNAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0040B13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107914" stop="108132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKKSENTSIIQDFSLSIFLLSLSSFLAADHSKSPHFHLFSDLEFRPYFSYCCNTCEDLSIVAEILLGNSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 110 chains have been computed
$ 
$ memory statistics:
$ 24536 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2230 bytes was the average size of a spliced alignment
$ 15536 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1726 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 133 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:38:14
-->
