<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:26:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9605" stop="8540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9394" g_stop="9367" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9366" i_stop="9286" i_length="81">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9285" g_stop="8869" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="444" r_length="416" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9394" e_stop="9367"/>
          <exon e_start="9285" e_stop="8869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATGAAGGGAATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATAT-GAGGGAGCGGAGTATCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTCTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCCTCCGGATATC</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGAT.................................................................................CGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTAC-TACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9695" stop="8779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9395" g_stop="9367" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9366" i_stop="9286" i_length="81">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9285" g_stop="9077" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="239" r_length="210" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9395" e_stop="9367"/>
          <exon e_start="9285" e_stop="9077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATGAAGGGAATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTATCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGAT.................................................................................CGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="10259" stop="8859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9959" g_stop="9367" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9366" i_stop="9286" i_length="81">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9285" g_stop="9159" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="717" r_length="126" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9959" e_stop="9367"/>
          <exon e_start="9285" e_stop="9159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTTGGTGGAGGTAGGTTATGATTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTAAAAAACCCTAATCTCTTTGTTAATGATGGGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTTTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG-GTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATGAAGGGAATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTATCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGAT.................................................................................CAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="10259" stop="9257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9959" g_stop="9556" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9959" e_stop="9556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTTGGTGGAGGTAGGTTATGATTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTAAAAAACCCTAATCTCTTTGTTAATGATGGGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9718" stop="10900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10018" g_stop="10574" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10018" e_stop="10574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9718" stop="10893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10018" g_stop="10574" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10018" e_stop="10574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9718" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10018" g_stop="10472" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10018" e_stop="10472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9719" stop="10876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10019" g_stop="10574" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10019" e_stop="10574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9719" stop="10864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10019" g_stop="10564" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10019" e_stop="10564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="9719" stop="10791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10019" g_stop="10491" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10019" e_stop="10491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320143" ref_strand="+" ref_description="SGN-E320143 [cTOB-21-F6]">
      <seq>tctcaaaccagaggaaatggtatcggacagcgagctcgtcgaccggattcatgagtttctaagcaccgcagacctcgataccaccaccaacaatatcgtccggcgaaagctcgaagaggacttcaatatcgatttatcggatagaaaagtgtttattcgagaacaaattgatctttaccttgaaagctactatcaaattaaccaagaacaaatggaagtagaaaacgatcaagaagaagacccggaggaggatgaagaagaagaagacccggaggaagaagaagacctggaggaatctaaggctgttgataaagcagaaggaaaaagttctgagaaaaagcctgggaagaagaatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="20761" stop="17421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20461" g_stop="20123" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20122" i_stop="17742" i_length="2381">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17741" g_stop="17721" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="360" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E320143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20461" e_stop="20123"/>
          <exon e_start="17741" e_stop="17721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAACCAGAGGAAATGGTATCGGACAGCGAGCTCGTCGACCGGATTCATGAGTTTCTAAGCACCGCAGACCTCGATACCACCACCAACAATATCGTCCGGCGAAAGCTCGAAGAGGACTTCAATATCGATTTATCGGATAGAAAAGTGTTTATTCGAGAACAAATTGATCTTTACCTTGAAAGCTACTATCAAATTAACCAAGAACAAATGGAAGTAGAAAACGATCAAGAAGAAGACCCGGAGGAGGATGAAGAAGAAGAAGACCCGGAGGAAGAAGAAGACCTGGAGGAATCTAAGGCTGTTGATAAAGCAGAAGGAAAAAGTTCTGAGAAAAAGTATGTATTTCTTTAATGCATGTGAAGTCTAAATATGTGTTCATTCATATCTATCCAAATTTCTGAGCTATGTATTAAATATTACTATTATTGATTTTGTTGCTTCTATATTATTACAATCATGCTACAATATAGTGATTATCTAAAGGGTTCTTGTTTCCATCTTCCTTTCTGCATTTCTGGTTTTCGAATCTTGTTGTGTTAAACTTAAAATATGTGGAATGTACGAATATATCAGTTGAAAATTGAAATTAAAGAGTAGTCAAAAAGATGAAAAGACTCAGGTTGGTTGGAAGGGAAGGAAATTAAGAAGTAGAAATCTCGCGGCGTTCTGCTACTGCCTGCTTTGTTTAACAAAATGTTTTAAGTTACAATCTCTGTCACTTCCTTTTCCATTTAGCAATTATATTATTACTGTATCCAGATTGCGTTTTGATTTGCTTGAAGAGGTGTAAACGTGTTAAGAAAGTTTTGCAGTCTTCTTCAACGGAAGCTGTAGCTATGGAGAATTAAGAGAGAGAAAAGGAACTGAAAGCAAAAAAAATGAACTGGATTCCTTGTTATTTCATTCTCTCGTATCATTTACATTGCATGCATTAATCGATTCACTCCACTCACCTCTAACAGAATACTGACACTTTTAACTAACTGCTAACTAATATCTTGACATTGTTGTGACTGACAGCTGGCATTACGTTCTAGAACCTTCATCCTCACAAAACGTTTGACCTCTAATTTTTGATATATTGACCCTTCGGGATGGCCTAGTGGTTTGAGCTTGGAACTCCATGTTCGAGGTCTCAAGTTCGAAACCTCTTGCCAACAAAAGCAGGGGGTTGCCTTCTGGGTCGAGCTCGTCATACCGGGCTTGCCCAGTGCGGATTACCTCTTCTATGTGGTTTTCGAGCTATTGCATAGGAGCGGGGGTTGCGCACCCAACGGTAGCGGTTGAAGGTTTCCCTTGTCATCAAAAAAAAATAAATGGTTGATATATTGGCCTATCTCTTTCAACTCATTGATTTTATTCACTGCTCAATTGGAAGCCTGAACTTTGACCCTCATTTACTATTAGAGTTGTAATTATGCATGTCGCCTTTGTAGCTATGTAAGATAATAGCGATTGGTGGTGGGCCATGGCATATAGTTAGTACTATTTATTATTCTTAAAGAAAATGATAAAAAGTAAATGTAGTATTTCTGGATGCATTAGCCTGGGAGACTATTGCTTGTTCAACCTCTTTTTTGTGGAAGGCATTAGCTACTCCTATTCTCATTCTTTCTCATGACTGCAAGTGCAACCGATATATTTCCAGAAATCAGCATAAAAATCTCTTTAAGAAGTTACACAAACTATTGCCAACCTCTGCATTTGTTAAAACGAAGAATCTCTCTGTAGTGTGAGTGAAATAGAGAATTACCTGGTTGTACTAGGGTTAATTACTCGTATGAAGAGCGAAACAGATGCAACCAAAAACTTAAAAAGAGAACAGAAGGGTAAATCTCTTAGTGGTTGATCGGCTTGAAGAAATAGGAAAGGAAAAAGGAATACTTAAGAAAGCTAGTGCAATGTCAAAATACACTATCATGTTCACTTTTACCATTTTGTTTCCTTTAAGTACCCTATTAACCCCTCAGGGGAAGTGCAAAAGAAGAGGATCGTCAATGTTAAATAGATCTAAAATTGACATTTTACAGACCAATTAGGTTGATGAAATCTTACTTTCATTTCTTTTGAGTAGTCTCAATCAAAAAGCTTAGGAGATTATAGGGTCAGCATCTTCCTTTTGTGACTTGAGAGATTATAGGTCCCTTTCATAACCTGAGAATTTATCTAGCTAGAACTTCAGTTAGTTTTGCTGAGAGAGTGCTCTCATTTTCTCTCTGGGAGAAGTCACTGCTATACTGCTGGGGAATGGATCATGTCTGTAGTTTAATTCTGGTGGCTGTGTGACATCTTTACTCGTGTCTGGATCTGCATTACTAGGTTTATATAAGTTAAGATGATGTTTGAATTAGTAATAAAAAGTTTCTAACAAAACGTTGAGGTGGTTTTGCTGATTAGTGATGCTAAGCTAGTTTATCGCTCTTTTGTTTATGCACAGATCCATCATTACAGATTCTGATAGCTAACCAGTCTCTAATCTCTATCATACCTGTTGACCCAGAAATTTCAAACTTAAATGTTTGCGGCAAACAATAAGTATCATTATGTTTGATTAGTTATTAATCTGATCATGCTGACTGCTGAGTGGGAGAGAAAATATGAAATCTGCATGATTGTGTATGCGAAAATTTATTTTGCTTATTTGCCTCTTAAAAGGAACTCTATATTTTAGTCTAGTCTATACTAGTTGAGGTAATGGTACATTCAATCCTATTAGGCCTGGGAAGAAGAATGAAAG</genome_strand>
        <mrna_strand>TCTCAAACCAGAGGAAATGGTATCGGACAGCGAGCTCGTCGACCGGATTCATGAGTTTCTAAGCACCGCAGACCTCGATACCACCACCAACAATATCGTCCGGCGAAAGCTCGAAGAGGACTTCAATATCGATTTATCGGATAGAAAAGTGTTTATTCGAGAACAAATTGATCTTTACCTTGAAAGCTACTATCAAATTAACCAAGAACAAATGGAAGTAGAAAACGATCAAGAAGAAGACCCGGAGGAGGATGAAGAAGAAGAAGACCCGGAGGAAGAAGAAGACCTGGAGGAATCTAAGGCTGTTGATAAAGCAGAAGGAAAAAGTTCTGAGAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGGAAGAAGAATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="26286" stop="25240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25986" g_stop="25540" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25986" e_stop="25540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCTTAATTATAAGTGTATAGCAAGAAGACATATG-TTTT-TCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTATCTGCAATATTTGAAGTTAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTACATGCGTATATACAATTTTTTCTCGCTTTATACAAAACAAAAACGGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGGGAATGGAGAGTGGCGAGAGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGATATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="26287" stop="25392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25987" g_stop="25666" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25987" e_stop="25666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCTTAATTATAAGTGTATAGCAAGAAGACATATG-TTTT-TCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTATCTGCAATATTTGAAGTTAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTACATGCGTATATACAATTTTTTCTCGCTTTATACAAAACAAAAACGGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718568" ref_strand="+" ref_description="SGN-E718568 [FC05AB12]">
      <seq>ttgcttcattcatatataccattctttcatttttttttccttagaacttgggatatttaaaaaggggtttgggtgtttattctttcaccacttctccaatggggaaattagctttgtttcatttgctttgtggaatcttgattttttgggctgtctctgtggtaaaagcaaaggatccttataaatacttcacatggactgccacttatggaatggcttctccattaggtactccccagcaggtaatccttatcaatggccaattccctggtcctaggcttgaccttgtcactaatgataatatcgtcctcaacttgattaataagttggatgagccccttcttttgacgtggaacggaatcaaacaaagaaagaactcttggcaagacggtgttttgggaacaaattgtcctattcctccaaacagaaattacatttacaagttccaacctaaagatcaaattgggagctatacttatttcccttcaactcaactgcacagagctgctggaggttttggagtgcttaatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="30040" stop="31834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30340" g_stop="30389" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30390" i_stop="30550" i_length="161">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30742" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="242" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30743" i_stop="30862" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30863" g_stop="30972" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="352" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31350" g_stop="31534" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="537" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E718568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30340" e_stop="30389"/>
          <exon e_start="30551" e_stop="30742"/>
          <exon e_start="30863" e_stop="30972"/>
          <exon e_start="31350" e_stop="31534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCATTCATATATACCATTCTTTCATTTTTTTTTCCTTAGAACTTGGTATGTTCCTTTCTTGTTCTGTTTAAAGCTGTAATCTTTTTTTTTTGTTGTTACATTCTTGTTTGAGCTGAAAATGTTGAAGAATTTCTTGATGACATCTCTAATTGTTTCTTTTGTACTTGAAGATGTGTTACATTGTAATGTTAACTTGGATATTGCAGGTATATTTAAAAAGGGGTTTGGGTGTTTATTCTTTCACCACTTCTCCAATGGGGAAATTAGCTTTGTTTCATTTGCTTTGTGGAATCTTGATTTTTTGGGCTGTCTCTGTGGTAAAAGCAGAGGATCCTTATAAATACTTCACATGGACTGCCACTTATGGAATGGCTTCTCCATTAGGTACTCCCCAGCAGGTTAGTATTATGTTTCCGTGTTAGTTGTTCATCTTGTGTTATTTTGTCACTTTGTTTTGATATGGGTTAATGAAGAACTTCATTTTTTTAATGAAAAGTTTTGATCTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATGGTGAGTTTCCTTTTCCCAATTTATCCCTGTATGTACTTACATTTTCTTGAATATGGCCTTAACTTCTTAACACTTATTCGTGGTTAATTTCGTTTACTGCGCTTGTTTGTGTGAGCTCGTTCATATTGCTGGTCCCAAGTCAGGATAAAGGAGGAGGGTTGCCAAGGGCTGCATAAATCTTACCCTCCTCAAACCTCACTTGTGGGATTATACTGGCTTTGTTGTTGGACTTGTTTATTTCAAAATGTGCTCCCCTTTTGGATTGTGGCAACTGACTAGGATGACTGCATTCTCATGATGTTTCTGTTGCTTGAGTGTTCATGAGTAGAAGAGTCAGAAAGGGCAGTGTTAAATGTAATATTGCTTATCATGTTTAGGAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATG</genome_strand>
        <mrna_strand>TTGCTTCATTCATATATACCATTCTTTCATTTTTTTTTCCTTAGAACTTG.................................................................................................................................................................GGATATTTAAAAAGGGGTTTGGGTGTTTATTCTTTCACCACTTCTCCAATGGGGAAATTAGCTTTGTTTCATTTGCTTTGTGGAATCTTGATTTTTTGGGCTGTCTCTGTGGTAAAAGCAAAGGATCCTTATAAATACTTCACATGGACTGCCACTTATGGAATGGCTTCTCCATTAGGTACTCCCCAGCAG........................................................................................................................GTAATCCTTATCAATGGCCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACGTG.........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAATCAAACAAAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAAATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546603" ref_strand="+" ref_description="SGN-E546603 [TUS-70-A21]">
      <seq>ggcttctccattaggtactccccagcaggtgatccttatcaatggtcaattccctggtcctaggcttgaccttgtcactaatgataatatcgtcctcaacttgattaataagttggatgagccccttcttttgacatggaacggaatcaaacagagaaagaactcttggcaagacggtgttttggggacaaattgtcctattcctccaaacagaaattacatttacaagtttcaacctaaagatcagattgggagctataattattttccttcaactcaactgcacagagctgctggaggttttggagtgcttaatgtttatgcgagatctgtaatccccgttccatatgcaaaacctgctggagatttcagtttgcttattggtgattggtacaagactagtcataaggtattgcggcaaatattggattcagggaagtctcttcccttcccagatggtctccttgtaaatggccaaaagcagtcaactttcactggggatcaaggcaaaacatatatgttcaggatttcaaatgtgggtttgaaaactaccattaacttcagaattcagggccacaagatgaagctggtagaggttgaaggatcacatgtcattcacaatttatacgattcttttgatgtccatgttggtcaatcattatctatccttgtcacattggatcaatctccaaaggactactacattgttgcatctacaaggttcacgacaactgttcttacttccacctcagtgctccactacacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="30415" stop="32871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30715" g_stop="30742" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30743" i_stop="30862" i_length="120">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30863" g_stop="30972" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="138" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31350" g_stop="31620" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="409" r_length="271" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31621" i_stop="32074" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32075" g_stop="32171" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="506" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32172" i_stop="32307" i_length="136">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32308" g_stop="32571" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="770" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E546603" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30715" e_stop="30742"/>
          <exon e_start="30863" e_stop="30972"/>
          <exon e_start="31350" e_stop="31620"/>
          <exon e_start="32075" e_stop="32171"/>
          <exon e_start="32308" e_stop="32571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTCCATTAGGTACTCCCCAGCAGGTTAGTATTATGTTTCCGTGTTAGTTGTTCATCTTGTGTTATTTTGTCACTTTGTTTTGATATGGGTTAATGAAGAACTTCATTTTTTTAATGAAAAGTTTTGATCTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATGGTGAGTTTCCTTTTCCCAATTTATCCCTGTATGTACTTACATTTTCTTGAATATGGCCTTAACTTCTTAACACTTATTCGTGGTTAATTTCGTTTACTGCGCTTGTTTGTGTGAGCTCGTTCATATTGCTGGTCCCAAGTCAGGATAAAGGAGGAGGGTTGCCAAGGGCTGCATAAATCTTACCCTCCTCAAACCTCACTTGTGGGATTATACTGGCTTTGTTGTTGGACTTGTTTATTTCAAAATGTGCTCCCCTTTTGGATTGTGGCAACTGACTAGGATGACTGCATTCTCATGATGTTTCTGTTGCTTGAGTGTTCATGAGTAGAAGAGTCAGAAAGGGCAGTGTTAAATGTAATATTGCTTATCATGTTTAGGAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAGGTGAGTCTACTGCCTATGTCTTGTAGTCTTCTCTTTTATCAAATTTTGAAGTTTGTGTTTATGGGGTTTAAATTCTAAAAATGATAGCTTACTTGGTTCTGCATAAATTTGACCAAAGCTATTGTGTTCTGCCAACCCTGTAGCTTTCTCTCTAGCTCCGCCCCTGTCAGTCAGATGCTAGAAGTAACTTATTGAGGACCCTAATTTTTGTTTCATCTAACGATATGTACAAAAGCATTCTTTCTTGATATATCTGGGACATCTAACGAACATTGAAATATACTTCAGACCTTTCCGCCATAATCTAAAGATTTTTATGTATCTGTTATGTTTTCATCTTTAAGAATTTTGAGGAAATGTCGAAACTTATTTAGGAAACTGCTTGAAGGGAATTACATGAAGTTTTCCATTGCTCTCATGTATGAAGATTTTTTCGTGTCCTGGGGACTTGCAGGTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAGGTTATTCTCAGCAAATCAATATTCTCTAATGCCTATGTTCGTTACTGAATTGCCATTCACCATCAAAATGTGCTGCTGTTGTACTCTCTATATGTAACAACTCATTAACAACACCAATCTTGCTTTTGATTTTCAGGCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACT</genome_strand>
        <mrna_strand>GGCTTCTCCATTAGGTACTCCCCAGCAG........................................................................................................................GTGATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATG.........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGGACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTTCAACCTAAAGATCAGATTGGGAGCTATAATTATTTTCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTGTAAATGGCCAAAAGCAGTCAACTTTCACTGGGGATCAAG........................................................................................................................................GCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCACAATTTATACGATTCTTTTGATGTCCATGTTGGTCAATCATTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359411" ref_strand="+" ref_description="SGN-E359411 [cLHT-31-O5]">
      <seq>gcttctccattaggtactccccagcaggtgatccttatcaatggtcaattccctggtcctaggcttgaccttgtcactaatgataatatcgtcctcaacttgattaataagttggatgagccccttcttttgacatggaacggaatcaaacagagaaagaactcttggcaagacggtgttttggggacaaattgtcctattcctccaaacagaaattacatttacaagtttcaacctaaagatcagattgggagctataattattttccttcaactcaactgcacagagctgctggaggttttggagtgcttaatgtttatgcgagatctgtaatccccgttccatatgcaaaacctgctggagatttcagtttgcttattggtgattggtacaagactagtcataaggtattgcggcaaatattggattcagggaagtctcttcccttcccagatggtctccttgtaaatggccaaaagcagtcaactttcactggggatcaaggcaaaacatatatgttcaggatttcaaatgtgggtttgaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="30416" stop="32652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30716" g_stop="30742" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30743" i_stop="30862" i_length="120">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30863" g_stop="30972" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="137" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31350" g_stop="31620" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="408" r_length="271" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31621" i_stop="32074" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32075" g_stop="32171" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="505" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32172" i_stop="32307" i_length="136">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32308" g_stop="32352" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="550" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E359411" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30716" e_stop="30742"/>
          <exon e_start="30863" e_stop="30972"/>
          <exon e_start="31350" e_stop="31620"/>
          <exon e_start="32075" e_stop="32171"/>
          <exon e_start="32308" e_stop="32352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCCATTAGGTACTCCCCAGCAGGTTAGTATTATGTTTCCGTGTTAGTTGTTCATCTTGTGTTATTTTGTCACTTTGTTTTGATATGGGTTAATGAAGAACTTCATTTTTTTAATGAAAAGTTTTGATCTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATGGTGAGTTTCCTTTTCCCAATTTATCCCTGTATGTACTTACATTTTCTTGAATATGGCCTTAACTTCTTAACACTTATTCGTGGTTAATTTCGTTTACTGCGCTTGTTTGTGTGAGCTCGTTCATATTGCTGGTCCCAAGTCAGGATAAAGGAGGAGGGTTGCCAAGGGCTGCATAAATCTTACCCTCCTCAAACCTCACTTGTGGGATTATACTGGCTTTGTTGTTGGACTTGTTTATTTCAAAATGTGCTCCCCTTTTGGATTGTGGCAACTGACTAGGATGACTGCATTCTCATGATGTTTCTGTTGCTTGAGTGTTCATGAGTAGAAGAGTCAGAAAGGGCAGTGTTAAATGTAATATTGCTTATCATGTTTAGGAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAGGTGAGTCTACTGCCTATGTCTTGTAGTCTTCTCTTTTATCAAATTTTGAAGTTTGTGTTTATGGGGTTTAAATTCTAAAAATGATAGCTTACTTGGTTCTGCATAAATTTGACCAAAGCTATTGTGTTCTGCCAACCCTGTAGCTTTCTCTCTAGCTCCGCCCCTGTCAGTCAGATGCTAGAAGTAACTTATTGAGGACCCTAATTTTTGTTTCATCTAACGATATGTACAAAAGCATTCTTTCTTGATATATCTGGGACATCTAACGAACATTGAAATATACTTCAGACCTTTCCGCCATAATCTAAAGATTTTTATGTATCTGTTATGTTTTCATCTTTAAGAATTTTGAGGAAATGTCGAAACTTATTTAGGAAACTGCTTGAAGGGAATTACATGAAGTTTTCCATTGCTCTCATGTATGAAGATTTTTTCGTGTCCTGGGGACTTGCAGGTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAGGTTATTCTCAGCAAATCAATATTCTCTAATGCCTATGTTCGTTACTGAATTGCCATTCACCATCAAAATGTGCTGCTGTTGTACTCTCTATATGTAACAACTCATTAACAACACCAATCTTGCTTTTGATTTTCAGGCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTA</genome_strand>
        <mrna_strand>GCTTCTCCATTAGGTACTCCCCAGCAG........................................................................................................................GTGATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATG.........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGGACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTTCAACCTAAAGATCAGATTGGGAGCTATAATTATTTTCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTGTAAATGGCCAAAAGCAGTCAACTTTCACTGGGGATCAAG........................................................................................................................................GCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703673" ref_strand="+" ref_description="SGN-E703673 [FA22AF03]">
      <seq>ctttgaacttgtaaggtaatccttatcaatggtcaattccctggtcctaggcttgaccttgtcactaatgataatatcgtcctcaacttgattaataagttggatgagccccttcttttgacatggaacggaatcaaacagagaaagaactcttggcaagacggtgttttgggaacaaattgtcctattcctccaaacagaaattacatttacaagttccaacctaaagatcagattgggagctatacttatttcccttcaactcaactgcacagagctgctggaggttttggagtgcttaatgtttatgcgagatctgtaatccccgttccatatgcaaaacctgctggagatttcagtttgcttattggtgattggtacaagactagtcataaggtattgcggcaaatattggattcagggaagtctcttcccttcccagatggtctccttataaatggccaaaagcagtcaactttcactggcgatcaaggcaaaacatatatgttcaggatttcaaatgtgggtttgaaaactaccattaacttcagaattcagggccacaagatgaagctggtagaggttgaaggatcacatgtcattcaaaatttatacgattcttttgatgtccacgttggtcaatctttatctatccttgtcacattggatcaatctccaaaggactactacattgttgcatctacaaggttcacgacaactgttcttacttccacctcagtgctccactacacaaactctcaaacacccgtatctggacctgtgccagctgctccagttaatcaatttcagtggtcgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="30548" stop="32936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30848" g_stop="30972" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31350" g_stop="31620" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="396" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31621" i_stop="32074" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32075" g_stop="32171" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="493" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32172" i_stop="32307" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32308" g_stop="32636" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="822" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E703673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30848" e_stop="30972"/>
          <exon e_start="31350" e_stop="31620"/>
          <exon e_start="32075" e_stop="32171"/>
          <exon e_start="32308" e_stop="32636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATGGTGAGTTTCCTTTTCCCAATTTATCCCTGTATGTACTTACATTTTCTTGAATATGGCCTTAACTTCTTAACACTTATTCGTGGTTAATTTCGTTTACTGCGCTTGTTTGTGTGAGCTCGTTCATATTGCTGGTCCCAAGTCAGGATAAAGGAGGAGGGTTGCCAAGGGCTGCATAAATCTTACCCTCCTCAAACCTCACTTGTGGGATTATACTGGCTTTGTTGTTGGACTTGTTTATTTCAAAATGTGCTCCCCTTTTGGATTGTGGCAACTGACTAGGATGACTGCATTCTCATGATGTTTCTGTTGCTTGAGTGTTCATGAGTAGAAGAGTCAGAAAGGGCAGTGTTAAATGTAATATTGCTTATCATGTTTAGGAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAGGTGAGTCTACTGCCTATGTCTTGTAGTCTTCTCTTTTATCAAATTTTGAAGTTTGTGTTTATGGGGTTTAAATTCTAAAAATGATAGCTTACTTGGTTCTGCATAAATTTGACCAAAGCTATTGTGTTCTGCCAACCCTGTAGCTTTCTCTCTAGCTCCGCCCCTGTCAGTCAGATGCTAGAAGTAACTTATTGAGGACCCTAATTTTTGTTTCATCTAACGATATGTACAAAAGCATTCTTTCTTGATATATCTGGGACATCTAACGAACATTGAAATATACTTCAGACCTTTCCGCCATAATCTAAAGATTTTTATGTATCTGTTATGTTTTCATCTTTAAGAATTTTGAGGAAATGTCGAAACTTATTTAGGAAACTGCTTGAAGGGAATTACATGAAGTTTTCCATTGCTCTCATGTATGAAGATTTTTTCGTGTCCTGGGGACTTGCAGGTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAGGTTATTCTCAGCAAATCAATATTCTCTAATGCCTATGTTCGTTACTGAATTGCCATTCACCATCAAAATGTGCTGCTGTTGTACTCTCTATATGTAACAACTCATTAACAACACCAATCTTGCTTTTGATTTTCAGGCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATG</genome_strand>
        <mrna_strand>CTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATG.........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAG........................................................................................................................................GCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372076" ref_strand="+" ref_description="SGN-E372076 [TUS-30-J14]">
      <seq>aggatttcaaatgtgggtttgaaaactaccattaacttcagaattcagggccacaagatgaagctggtagaggttgaaggatcacatgtcattcaaaatttatacgattcttttgatgtccacgttggtcaatctttatctatccttgtcacattggatcaatctccaaaggactactacattgttgcatctacaaggttcacgacaactgttcttacttccacctcagtgctccactacacaaactctcaaacacccgtatctggacctgtgccagctgctccagttaatcaatttcagtggtcgttgatgcaagccagaacaatcaggtggaatcttacatcaaatgcagctagaccaaatcctcagggttcattccattatggaaaaattacaccttcaaggacaattttgcttgcaaactctgcaccacttatcaacgggaagcagagatacgctgtcaatggtatctcttacataaatcctgacactcctctgaagcttgctgatcactttaacatccccggagtgttcactttggattccattcgaagtgctcccactgctgattctccacacctagctacagctgtgttgccatcttctctccatgagttcctcgaaatcgttttccaaaacaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtaggtttcggatcaggtacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="32025" stop="33843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32325" g_stop="32653" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32654" i_stop="33063" i_length="410">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33064" g_stop="33429" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="695" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33524" g_stop="33543" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="715" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E372076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32325" e_stop="32653"/>
          <exon e_start="33064" e_stop="33429"/>
          <exon e_start="33524" e_stop="33543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAGGTACACATCATCCAATGAGCATTCACTGCCTCCTCACATCTATGCATTATGACCTCTCCAAGTTTTAGAATCATGGTTTCCTTTCTTGTAGTTAGTCCTGTACTTTAGTGTGTTTTCGCTCGATTCACCATGAACGGACGCTCATAGATCGCTAGGGTGAAGGGTAACCTTAAATATTTTAGTAATAACAAGGGTAGCAACTACCGTGAGAACACTTCAGAGAGGTAAACTGTTTGTTTGCAAGGGAAGTAAGATGAGTTTTCCTGCTGCAGTGTCCTTAATGGGAATGATTATTCTGTTGCACCAGCTTAGCATTTTTAACCAAACATATGATTAAGAATATGGAAAGGAAAAGTTCCCAGCTCAGATGATTACAACTTCTCATAACCTAAGTTGTTTTCGTTTTGAAGGTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGA</genome_strand>
        <mrna_strand>AGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG..............................................................................................TTTCGGATCAGGTACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285630" ref_strand="+" ref_description="SGN-E285630 [cLES-5-M4]">
      <seq>aggatttcaaatgtgggtttgaaaactaccattaacttcagaattcagggccacaagatgaagctggtagaggttgaaggatcacatgtcattcaaaatttatacgattcttttgatgtccacgttggtcaatctttatctatccttgtcacattggatcaatctccaaaggactactacattgttgcatctacaaggttcacgacaactgttcttacttccacctcagtgctccactacacaaactctcaaacacccgtatctggacctgtgccagctgctccagttaatcaatttcagtggtcgttgatgcaagccagaacaatcaggtggaatcttacatcaaatgcagctagaccaaatcctcagggttcattccattatggaaaaattacaccttcaaggacaattttgcttgcaaactctgcaccacttatcaacgggaagcagagatacgctgtcaatggtatctcttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="32025" stop="33513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32325" g_stop="32653" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32654" i_stop="33063" i_length="410">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33064" g_stop="33213" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="479" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E285630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32325" e_stop="32653"/>
          <exon e_start="33064" e_stop="33213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAGGTACACATCATCCAATGAGCATTCACTGCCTCCTCACATCTATGCATTATGACCTCTCCAAGTTTTAGAATCATGGTTTCCTTTCTTGTAGTTAGTCCTGTACTTTAGTGTGTTTTCGCTCGATTCACCATGAACGGACGCTCATAGATCGCTAGGGTGAAGGGTAACCTTAAATATTTTAGTAATAACAAGGGTAGCAACTACCGTGAGAACACTTCAGAGAGGTAAACTGTTTGTTTGCAAGGGAAGTAAGATGAGTTTTCCTGCTGCAGTGTCCTTAATGGGAATGATTATTCTGTTGCACCAGCTTAGCATTTTTAACCAAACATATGATTAAGAATATGGAAAGGAAAAGTTCCCAGCTCAGATGATTACAACTTCTCATAACCTAAGTTGTTTTCGTTTTGAAGGTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACAT</genome_strand>
        <mrna_strand>AGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546602" ref_strand="+" ref_description="SGN-E546602 [TUS-70-A21](-)">
      <seq>gcagagatacgctgtcaatggtatctcttacataaatcctgacactcctctgaagcttgctgatcactttaacatccccggagtgttcactttggattccattcgtagtgctcccactgctgattctccacacctagctacagctgtgttgccatcatctctccatgagtttctcgaaatcgtattccaaaacaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtaggtttcggatcaggtacttggacacaagctagtagaaaagggtataatcttgttgatgctcttactagacatactacacaggtttatccaaaatcttggactgctatatatgtgtctttggacaaccaaggaatgtggaatttgaggtctgcaatgtgggatagacaatatcttggacaacaggtttacctgagggtatacaatccaacagccagtttagctaatgaatatgacatacctaccaatgctcttctctgtggcaaagctgctgctcttcgacatccttaatttggtttcatatttatgttttcttggtcataagaggttgactacaagagatgccggcaaaagaaactacttgctccatatgttgtaacacatagcaagcaaatattttgtgagtaacttcatatttttgatgtttaaaattttactatcttcatggaaccttggccgaaagattatattaaacagccttatgaaacattccatgataaatgatgtataaggcccacatgaatatgaaagatgagtttttttaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="32881" stop="34523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33181" g_stop="33429" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33524" g_stop="33602" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="328" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33751" g_stop="34228" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="801" r_length="473" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E546602" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33181" e_stop="33429"/>
          <exon e_start="33524" e_stop="33602"/>
          <exon e_start="33751" e_stop="34228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATA--TTTGATGTTTAAGATTTTACTATATTTATGGAACCTTGGCCGAAAGATTATATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGG-CC-GATGAACATGAAAGATGAGTTTTTTTAACCACCAATGTGT</genome_strand>
        <mrna_strand>GCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGTAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCATCTCTCCATGAGTTTCTCGAAATCGTATTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG..............................................................................................TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG....................................................................................................................................................GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATA---TTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGAT---GCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATA-TTTTGTGAGTAACTTCATATTTTTGATGTTTAAAATTTTACTATCTTCATGGAACCTTGGCCGAAAGA-T-TATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGGCCCACATGAATATGAAAGATGAGTTTTTTTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250619" ref_strand="+" ref_description="SGN-E250619 [cLEG-7-I22]">
      <seq>tgaagcttgctgatcactttaacatccccggagtgttcactttggattccattcgaagtgctcccactgctgattctccacacctagctacagctgtgttgccatcttctctccatgagttcctcgaaatcgttttccaaaacaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtagggtatgtcgcaatcatcaaaaggttttgattcactgcacctggcgtcgtaaggttggcttagttttcttactcttcctgttgtaaatatttgcagtttcggatcaggtacttggacacaagctagtagaaaagggtataatcttgttgatgctcttactagacatactacacaggtaattccagcttcctccacgactataaaaatcctcaacactgttaatgtatgtcattttttatcattttagtcaagtactattgatgattattcatggaaagctgaatttgcagtttctaagcttcaggatgaaatgtttgttgcaggtttatccaaaatcttggactgctatatatgtgtctttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="32931" stop="34092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33231" g_stop="33792" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E250619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33231" e_stop="33792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGAC</genome_strand>
        <mrna_strand>TGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372075" ref_strand="+" ref_description="SGN-E372075 [TUS-30-J14](-)">
      <seq>actttaacatccccggagtgttcactttggattccattcgaagtgctcccactgctgattctccacacctagctacagctgtgttgccatcttctctccatgagttcctcgaaatcgttttccaaaacaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtaggtttcggatcaggtacttggacacaagctagtagaaaagggtataatcttgttgatgctcttactagacatactacacaggtttatccaaaatcttggactgctatatatgtgtctttggacaaccaaggaatgtggaatttgaggtctgcaatgtgggatagacaatatcttggacaacaggtttacctgagggtatacaatccaacagccagtttagctaatgaatatgacatacctaccaatgctcttctctttggcaaagctgctgctcttcgacatccttaatttggtttcatattttttatgttttcttggtcataagaggttgactacaagagatgccgccggcaaaagaaactacttgctccatatgttgtaacacatagcaagcaaatatttttgtgagtaacttcatatttgatgtttaagattttactatatttatggaaccttggccgaaagattatatattaaacagccttatgaaacattccatgataaatgatgtataaggccgatgaacatgaaagatgagtttttttaaccaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="32946" stop="34523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33246" g_stop="33429" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33524" g_stop="33602" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="263" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33751" g_stop="34222" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="735" r_length="472" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="745"/>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E372075" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33246" e_stop="33429"/>
          <exon e_start="33524" e_stop="33602"/>
          <exon e_start="33751" e_stop="34222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGATGTTTAAGATTTTACTATATTTATGGAACCTTGGCCGAAAGATTATATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGGCCGATGAACATGAAAGATGAGTTTTTTTAACCACCA</genome_strand>
        <mrna_strand>ACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG..............................................................................................TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG....................................................................................................................................................GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTTTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGATGTTTAAGATTTTACTATATTTATGGAACCTTGGCCGAAAGATTATATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGGCCGATGAACATGAAAGATGAGTTTTTTTAACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337307" ref_strand="+" ref_description="SGN-E337307 [cTOE-7-H22]">
      <seq>ctcgaaatcgttttccaaaacaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtaggtttcggatcaggtacttggacacaagctagtagaaaagggtataatcttgttgatgctcttactagacatactacacaggtttatccaaaatcttggactgctatatatgtgtctttggacaaccaaggaatgtggaatttgaggtctgcaatgtgggatagacaatatcttggacaacaggtttacctgagggtatacaatccaacagccagtttagctaatgaatatgacatacctaccaatgctcttctctgtggcaaagctgctgctcttcgacatccttaatttggtttcatattttttatgttttcttggtcataagaggttgactacaagagatgccgccggcaaaagaaactacttgctccatatgttgtaacacatagcaagcaaatatttttgtgagtaacttcatatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="33053" stop="34394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33353" g_stop="33429" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33524" g_stop="33602" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="156" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33751" g_stop="34094" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="500" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E337307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33353" e_stop="33429"/>
          <exon e_start="33524" e_stop="33602"/>
          <exon e_start="33751" e_stop="34094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGAT</genome_strand>
        <mrna_strand>CTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG..............................................................................................TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG....................................................................................................................................................GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317445" ref_strand="-" ref_description="SGN-E317445 [cTOA-28-P1]">
      <seq>tttccaaaccaatgaagacacaatgcaatcttggcatcttgacggttatgatttctgggtcgtaggtttcggatcaggtacttggacacaagctagtagaaaagggtataatcttgttgatgctcttactagacatactacacaggtttatccaaaatcttggactgctatatatgtgtctttggacaaccaaggaatgtggaatttgaggtctgcaatgtgggatagacaatatcttggacaacaggtttacctgagggtatacaatccaacagccagtttagctaatgaatatgacatacctaccaatgctcttctctgtggcaaagctgctgctcttcgacatccttaatttggtttcatattttttatgttttcttggtcataagaggttgactacaagagatgccgccggcaaaagaaactacttgctccatatgttgtaacacatagcaagcaaatatttttgtgagtaacttcaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="33064" stop="34388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33364" g_stop="33429" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33524" g_stop="33602" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="145" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33751" g_stop="34085" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="480" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="500"/>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E317445" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317445" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33364" e_stop="33429"/>
          <exon e_start="33524" e_stop="33602"/>
          <exon e_start="33751" e_stop="34085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTC</genome_strand>
        <mrna_strand>TTTCCAAACCAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG..............................................................................................TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG....................................................................................................................................................GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432030" ref_strand="+" ref_description="SGN-E432030 [STM-56-K12]">
      <seq>caaattgctccttcactacgtttgcgaaattcagttctgcgttttctccagttcgcacggcgaaattctaactgcactctagggtttattaattacttccatcgtctcgtcgatcaatcgcggctttgtttgtgaagtatttactaaagaggaatcatcaatcatgaattgcgaagtttgtcagctaaaagaacttgatgtggagcactttgagatacgagaagtcctccgatgtattttacatacaattatgttccacagagccttaggcctactgcggccgaaggatgttgatttggaactttttgacattacatatacacagtgtggtgatgtggaggttgaaaagaaaattgaagagaagattaccctattcatcgatagagtcgagaagcaccctaacaggaaaaatcagatttgcctatccttctgtgaagtaaaaaacaagcaggcctcgtggttcactaccaaagttgaacgtttttactgggagcactggtatataaatttgaatgtggctcatcatccgaaaggtcatcctggcaagtctcatctctcaaaagtagttgacccaggagagagtgcatctgaggagaggagtgctcggcgaacagtgttggaatcatctcttcgtgaagctatgtttcagataataaaatttgtaaatgagaaaaaggaccacattcctgcgatttcaaatcttgagtgtgtcacatttccctatgagatcactatctcaagttcatcagaatctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="37297" stop="41045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37619" g_stop="37765" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="196" r_length="145" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37766" i_stop="37861" i_length="96">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37862" g_stop="37898" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="233" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37899" i_stop="38382" i_length="484">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38383" g_stop="38468" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="319" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38469" i_stop="39037" i_length="569">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39038" g_stop="39133" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="415" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39134" i_stop="40304" i_length="1171">
            <donor d_prob="0.652" d_score="0.98"/>
            <acceptor a_prob="0.343" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40305" g_stop="40467" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="578" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40468" i_stop="40577" i_length="110">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40578" g_stop="40740" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="741" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E432030" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37619" e_stop="37765"/>
          <exon e_start="37862" e_stop="37898"/>
          <exon e_start="38383" e_stop="38468"/>
          <exon e_start="39038" e_stop="39133"/>
          <exon e_start="40305" e_stop="40467"/>
          <exon e_start="40578" e_stop="40740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCACGGCGAAATTCAAACTGCAACTTTAGGGTTTACTATAATTATAATTTCAATTATCTCCTCGATCAATCGCGGCTTTGTTTGTGAAGTA----CTAAAGAGGAATCATCAATCATGAATTGCGAAGTTTGTCAGCTAAAAGAACTTGTAAGTTTCTACTTTTGAATTATGTGAATATGAGCTCTGAGTTCTCTCTTTTTGGCTTGATTTTCGTCTAATTCTTCACTGGTTATCTTGCTGAAGGATGTGGAGCACTTTGAGATACGAGAAGTCCTCCGATGTAAGTTCAATTCCTTAATCCACTGCTTTATTAGTGATTATTATGTTTTGAATTCTACGGATTAATCCGCTTCTCAGACAATGTTATATATACCTATACCAACATACATATGCACCAGATACCTGTTAAATTCTTCGATTTGTCTATGCTCTAGTTCATGTGCAATTAGGGAAATATGATGGATAAACTTTCAGCTCATAGCTTATATTTGACTAAGTTTTGTGTATAATCTCAGCTTTGGCTTCTATTGGTTAGTTTTGATGTCTAATTCAACAACTTTGTTCACATGTCACATTGTTCATGTGTTCTAAAGACTCTGCTTTTGACATTCTTTCTTCTGTGCTTTTACTTGTTTGCTGCTTTGAGGTCAGTTCCTCCTAGATTTCATCTTTCAATGGTTGCAGGCTCAGAGTTCCTAACAATTTTGACTGTAGTTTTATACATCGTGCAGCTCTATCCTAAACAATCGAATGGTCAATTGCAGGTATTTTGCATACAATTATGTTCCATAGAGCCTTAGGCCTGCTGCGGCCGAAGGATGTTGATTTGGAACTTTTTGACATTACATATGTAAGTAATAAATTCTTATATTGGTAGATGGTAGGCTTTATCTCTTTTTTCTTGTTTTCTTTTTCTTCTGAAATCAGTGTGGTGTATGGAAAAAAATGGAATAAGGTATTGTGGCTGGAGGAGTCTTGATTATTCAAAGACGAGACATGAGATGTGGATATGACATCATGAATTTTGGAAAAGGAGTAGATGACCACTATGTGTTATCATTAGAAGCTAATATATTCTTTTTTTTTCCAAGAGAAGGTGAATTAATGGTCAAACAAATTGTTCACTATTAGTGGTAGACGTTTCTAATGACACATTGAATTAGAGGGAAATCACTATATAATATAGAACCAAAAGCGAGGTCCTTCAAATTATGTTACTCTCAAGGAGAGGTTGGTGTAATATTGTAATATATCATGTGTCTTTTTCTTTTTTATTTTATCCTTTCCCTATTATTTGATAGATCTTTTATAGTGATGCAATAATTTGCTTATATTTATCTTTAATCAGTATAAGCTGCTGATACTTACTATTTTATGGTATACTTTTGGTTTATTGTTCTTTCATGTTATGTTATGTAGACACAGTGTGGTGATGTGGAGGTTGAAAAGAAAATTGAAGAGAAGATTACCCTATTCATTGATAGAGTCGAGAAGCACCCTAACAGGAAAAATCAGGTTAGCCAGTGGTTGCAGTTTGTTTCTGTTGGTGATGATCACTGTTTTGGCCAATGGCCATTCACTTTCCTACTTTATAGTCCTGTTCAGTGTTTTACATATTCTACTAGCCATTTCCTTTTCTTGTGATGACGGTAACCTTGTATTCACACCAAAAAACTCATCAAGAAAAACTGATGGTGGGATTTACAACCCCTGGGTGCATCATGATAAACAAAAACCAAAAAATACTTTGCAGTTCTCCTATAATGTCCACTAGACTTTCTGCCTCTCCCGCCATGTCCTATTTACACCAAAAATATAGCGAAGTCAGACTCTTCATCTTGATCTTCTGAATGCTGCTAGCTTGCCCGTCACGGGATCTTCCGTTCCTTTCCTTCAAAAGTGTTTATAAGATGCAAGCTGGAATGCGTTTCCACCATCCTCTTTTGATCTTCTCCTTCTGCCCATTCCTTTGCTTTGTTTCAGCATGTCTAAAGAAGTTTTGGGCATTACCCAGCTAACTCCAGGTATACATTAAGAACATGTCCCACAGATTTACAACTGTTTTGCAATGTTCAAATAAGTGGTTGTTAACCTCTGCCTCCTTTTCACACATGTAACACCTTGAGTAAACCTGTATACTACTTCTCTGTAACACTTCATGAGTTAGGAATGCCTATCACCAACCATGAGAAACATGACACCTTATGAGGGATTTTAATCTTCCAGATTAGCTTCCATGGCCACACCATTACCATTGTCTGATTAGAGTTCATATTCCAGTAACAGGATTTCACAGTGAAGCCCCCTTTGTTGTGTAGCTTCCATATTGGACTATCAGGTCCCACTGAAACACTTGGGAATGAATTCAACATCTTCAACAGTCCTGCTACTCTACTAATCTCCCAATCGTTTAGACTATAGCCATTTCTTTTTCTTCAATATGCTCTCTGGTCATAAGAATATCTTGTGATTTATGGCGGGTTCTTATTCCGTACTGTTTGGTTCTTCTATTGTATGTTGCATTTTTTCTCAGGATATTGTTGCCTGTAACCTTTTGACTAGTGATATAAGTATCTTGTGGAATTCTAATCACTAGTGAAATCAGTATTGGTCTAAATATCTAAATGAACTTTCTGTTGTAACCTCAACATACATATTTGTGTAACTGGATGGAGAAAGTATGCAGATTTGCCTATCCTTCTGTGAAGTCAAAAACAAACAAGCCTCGTGGTTCACTACCAAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAGGTACCATACTTTTTTTTCTCCTTTTTTTTCTCAAACATTTTTTCCATATGGTTTTACAATTTGTTTCATTAGTTAATTTGTAAAGGCAGGTATAACCTTTTTTTTTGCAGAGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAG</genome_strand>
        <mrna_strand>TTCGCACGGCGAAATTCTAACTGC-ACTCTAGGGTTTA-T-TAA-T-T-ACTTCCATCGTCTCGTCGATCAATCGCGGCTTTGTTTGTGAAGTATTTACTAAAGAGGAATCATCAATCATGAATTGCGAAGTTTGTCAGCTAAAAGAACTT................................................................................................GATGTGGAGCACTTTGAGATACGAGAAGTCCTCCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTACATACAATTATGTTCCACAGAGCCTTAGGCCTACTGCGGCCGAAGGATGTTGATTTGGAACTTTTTGACATTACATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGTGTGGTGATGTGGAGGTTGAAAAGAAAATTGAAGAGAAGATTACCCTATTCATCGATAGAGTCGAGAAGCACCCTAACAGGAAAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCCTATCCTTCTGTGAAGTAAAAAACAAGCAGGCCTCGTGGTTCACTACCAAAGTTGAACGTTTTTACTGGGAGCACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAGTCTCATCTCTCAAAAGTAGTTGACCCAGGAG..............................................................................................................AGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGCTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGACCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACATTTCCCTATGAGATCACTATCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400850" ref_strand="+" ref_description="SGN-E400850 [PPC-2-G4]">
      <seq>caaattgctccttcactacgtttgcgaaattcagttctgcgttttctccagttcgcacggcgaaattctaactgcactctagggtttattaattacttccatcgtctcgtcgatcaatcgcggctttgtttgtgaagtatttactaaagaggaatcatcaatcatgaattgcgaagtttgtcagctaaaagaacttgatgtggagcactttgagatacgagaagtcctccgatgtattttacatacaattatgttccacagagccttaggcctactgcggccgaaggatgttgatttggaactttttgacattacatatacacagtgtggtgatgtggaggttgaaaagaaaattgaagagaagattaccctattcatcgatagagtcgagaagcaccctaacaggaaaaatcagatttggctatccttctgtgaaagtaaaaaaccagcaggccctcgtgggtcactaccaaagctgaacgtttttactgggagcactgggatataaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="37297" stop="40699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37619" g_stop="37765" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="196" r_length="145" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37766" i_stop="37861" i_length="96">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37862" g_stop="37898" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="233" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37899" i_stop="38382" i_length="484">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38383" g_stop="38468" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="319" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38469" i_stop="39037" i_length="569">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39038" g_stop="39133" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="415" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39134" i_stop="40304" i_length="1171">
            <donor d_prob="0.652" d_score="0.98"/>
            <acceptor a_prob="0.343" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40305" g_stop="40401" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="0.835"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E400850" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37619" e_stop="37765"/>
          <exon e_start="37862" e_stop="37898"/>
          <exon e_start="38383" e_stop="38468"/>
          <exon e_start="39038" e_stop="39133"/>
          <exon e_start="40305" e_stop="40401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCACGGCGAAATTCAAACTGCAACTTTAGGGTTTACTATAATTATAATTTCAATTATCTCCTCGATCAATCGCGGCTTTGTTTGTGAAGTA----CTAAAGAGGAATCATCAATCATGAATTGCGAAGTTTGTCAGCTAAAAGAACTTGTAAGTTTCTACTTTTGAATTATGTGAATATGAGCTCTGAGTTCTCTCTTTTTGGCTTGATTTTCGTCTAATTCTTCACTGGTTATCTTGCTGAAGGATGTGGAGCACTTTGAGATACGAGAAGTCCTCCGATGTAAGTTCAATTCCTTAATCCACTGCTTTATTAGTGATTATTATGTTTTGAATTCTACGGATTAATCCGCTTCTCAGACAATGTTATATATACCTATACCAACATACATATGCACCAGATACCTGTTAAATTCTTCGATTTGTCTATGCTCTAGTTCATGTGCAATTAGGGAAATATGATGGATAAACTTTCAGCTCATAGCTTATATTTGACTAAGTTTTGTGTATAATCTCAGCTTTGGCTTCTATTGGTTAGTTTTGATGTCTAATTCAACAACTTTGTTCACATGTCACATTGTTCATGTGTTCTAAAGACTCTGCTTTTGACATTCTTTCTTCTGTGCTTTTACTTGTTTGCTGCTTTGAGGTCAGTTCCTCCTAGATTTCATCTTTCAATGGTTGCAGGCTCAGAGTTCCTAACAATTTTGACTGTAGTTTTATACATCGTGCAGCTCTATCCTAAACAATCGAATGGTCAATTGCAGGTATTTTGCATACAATTATGTTCCATAGAGCCTTAGGCCTGCTGCGGCCGAAGGATGTTGATTTGGAACTTTTTGACATTACATATGTAAGTAATAAATTCTTATATTGGTAGATGGTAGGCTTTATCTCTTTTTTCTTGTTTTCTTTTTCTTCTGAAATCAGTGTGGTGTATGGAAAAAAATGGAATAAGGTATTGTGGCTGGAGGAGTCTTGATTATTCAAAGACGAGACATGAGATGTGGATATGACATCATGAATTTTGGAAAAGGAGTAGATGACCACTATGTGTTATCATTAGAAGCTAATATATTCTTTTTTTTTCCAAGAGAAGGTGAATTAATGGTCAAACAAATTGTTCACTATTAGTGGTAGACGTTTCTAATGACACATTGAATTAGAGGGAAATCACTATATAATATAGAACCAAAAGCGAGGTCCTTCAAATTATGTTACTCTCAAGGAGAGGTTGGTGTAATATTGTAATATATCATGTGTCTTTTTCTTTTTTATTTTATCCTTTCCCTATTATTTGATAGATCTTTTATAGTGATGCAATAATTTGCTTATATTTATCTTTAATCAGTATAAGCTGCTGATACTTACTATTTTATGGTATACTTTTGGTTTATTGTTCTTTCATGTTATGTTATGTAGACACAGTGTGGTGATGTGGAGGTTGAAAAGAAAATTGAAGAGAAGATTACCCTATTCATTGATAGAGTCGAGAAGCACCCTAACAGGAAAAATCAGGTTAGCCAGTGGTTGCAGTTTGTTTCTGTTGGTGATGATCACTGTTTTGGCCAATGGCCATTCACTTTCCTACTTTATAGTCCTGTTCAGTGTTTTACATATTCTACTAGCCATTTCCTTTTCTTGTGATGACGGTAACCTTGTATTCACACCAAAAAACTCATCAAGAAAAACTGATGGTGGGATTTACAACCCCTGGGTGCATCATGATAAACAAAAACCAAAAAATACTTTGCAGTTCTCCTATAATGTCCACTAGACTTTCTGCCTCTCCCGCCATGTCCTATTTACACCAAAAATATAGCGAAGTCAGACTCTTCATCTTGATCTTCTGAATGCTGCTAGCTTGCCCGTCACGGGATCTTCCGTTCCTTTCCTTCAAAAGTGTTTATAAGATGCAAGCTGGAATGCGTTTCCACCATCCTCTTTTGATCTTCTCCTTCTGCCCATTCCTTTGCTTTGTTTCAGCATGTCTAAAGAAGTTTTGGGCATTACCCAGCTAACTCCAGGTATACATTAAGAACATGTCCCACAGATTTACAACTGTTTTGCAATGTTCAAATAAGTGGTTGTTAACCTCTGCCTCCTTTTCACACATGTAACACCTTGAGTAAACCTGTATACTACTTCTCTGTAACACTTCATGAGTTAGGAATGCCTATCACCAACCATGAGAAACATGACACCTTATGAGGGATTTTAATCTTCCAGATTAGCTTCCATGGCCACACCATTACCATTGTCTGATTAGAGTTCATATTCCAGTAACAGGATTTCACAGTGAAGCCCCCTTTGTTGTGTAGCTTCCATATTGGACTATCAGGTCCCACTGAAACACTTGGGAATGAATTCAACATCTTCAACAGTCCTGCTACTCTACTAATCTCCCAATCGTTTAGACTATAGCCATTTCTTTTTCTTCAATATGCTCTCTGGTCATAAGAATATCTTGTGATTTATGGCGGGTTCTTATTCCGTACTGTTTGGTTCTTCTATTGTATGTTGCATTTTTTCTCAGGATATTGTTGCCTGTAACCTTTTGACTAGTGATATAAGTATCTTGTGGAATTCTAATCACTAGTGAAATCAGTATTGGTCTAAATATCTAAATGAACTTTCTGTTGTAACCTCAACATACATATTTGTGTAACTGGATGGAGAAAGTATGCAGATTTGCCTATCCTTCTGTG-AAGTCAAAAACAAACAAG-CCTCGTGGTTCACTACCAAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGA</genome_strand>
        <mrna_strand>TTCGCACGGCGAAATTCTAACTGC-ACTCTAGGGTTTA-T-TAA-T-T-ACTTCCATCGTCTCGTCGATCAATCGCGGCTTTGTTTGTGAAGTATTTACTAAAGAGGAATCATCAATCATGAATTGCGAAGTTTGTCAGCTAAAAGAACTT................................................................................................GATGTGGAGCACTTTGAGATACGAGAAGTCCTCCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTACATACAATTATGTTCCACAGAGCCTTAGGCCTACTGCGGCCGAAGGATGTTGATTTGGAACTTTTTGACATTACATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGTGTGGTGATGTGGAGGTTGAAAAGAAAATTGAAGAGAAGATTACCCTATTCATCGATAGAGTCGAGAAGCACCCTAACAGGAAAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCTATCCTTCTGTGAAAGTAAAAAACCAGCAGGCCCTCGTGGGTCACTACCAAAGCTGAACGTTTTTACTGGGAGCACTGGGATATAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369557" ref_strand="+" ref_description="SGN-E369557 [TUS-25-F22](-)">
      <seq>caaagtagaacgtttttactgggaacactggtatataaatttgaatgtggctcatcatccgaaaggtcatcctggcaaatctcatctctcaaaagtagttgacccaggagagagtgcatctgaggagaggagtgctcggcgaacagtgttggaatcatctcttcgtgaagttatgtttcagataataaaatttgtaaatgagaaaaaggatcacattcctgcgatttcaaatcttgagtgtgtcacttttccctatgagatcactatctcaagttcatcagattctgcatttgggatggatgtgatcaggaggatgctacagactgggcatccgaccatgctcagctgattggagataccctgatggtggccaatcttccccttatctcattctttaagaggtaaaatggttgttcatccaatgtctggcaatgtgaatatttcggaccaagtatagtatgggttcctctagtggcctaggagtctcacaattgaaagaaatggaagctgtggatatctttgcttgatctactaatttattttttccttcgtgtttcatatcatagtaaacaacatatacagctgaatattgcatgatcaatctaattaagtttgtttagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="40058" stop="44606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40358" g_stop="40467" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40468" i_stop="40577" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40578" g_stop="40740" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="273" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40741" i_stop="43957" i_length="3217">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43958" g_stop="44315" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="631" r_length="358" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E369557" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40358" e_stop="40467"/>
          <exon e_start="40578" e_stop="40740"/>
          <exon e_start="43958" e_stop="44315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAGGTACCATACTTTTTTTTCTCCTTTTTTTTCTCAAACATTTTTTCCATATGGTTTTACAATTTGTTTCATTAGTTAATTTGTAAAGGCAGGTATAACCTTTTTTTTTGCAGAGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAGGTAATTTCCCCTTTCTCTATGTTGTGAACATGTAATTAAGTTCTGCTACTCATCATAGATCAGTATACAAGTGGTTTGCTATTATTGACTTCAAACTGTCATTATTGATTAGTTTCTGTCGGTTTTGCTTTAATGTTCTGATTTATATGGATTAGAATTCCAAAATGCATTTGTTTTTCTGGAGTTTCTTCCTGCATGAAGTTATAATCTGCTGTGGTACTGCAATTTGGTATTTATGTTATTTGTTTTCAACTTCTTGCCATAGTAAGTAGGTTATCAGCTTATATGAATATCCTTTACATGAGATATAATATCTTCAAAATCTTCAAATCTATGGGGTTAATTGACCTAAGGCAAAAAAGACTATTTTCTATGCTGATGTTCTCCTTGTCCGCATAAGTAGAAGGTGAAAGTGGAATAGGCTTATGATAACTCGTTATAGTCTTCCACCCTATGTTAGTCTCAAAGTTCCTCTTCTCCTACTTCTAGCTTAAATTGATATCAGTGCAGTTTGTTGAGTAGACACTTATTTCTGGGTCTGATAACCTGCATGACTATTTTGGCTAATAGCCTAATATGTTCTTTCCATACTGGTGGTTTCTTTTTGTCATATATGCTCTTTTGTACAAGTAATGCACTTACATGTGCCACTTTTGCTATGCTTGAATTTGTTAATATGTTAATTTGGCTAAAACTTATCTTTTTATGAAAGATTTAAAGTTTTGTAGGATGTATGTGGTTTTTGAGCCTCAAGTTTGGCCATAACACTCGCTCAGTAATTGCCTTTTGCCAAAGACACATACTCTGTCATGGGTGATGAGTCTAGTGCTTAGATCTTTGTTTCTTCTTTATACTTCAATTTTGTTCTAAGTTGCTCGAATTCAGATGCGGGTGTCTGATATGGATGCGATCTAAAGGTCAAATCCTTTATGATCTAAATTATAAGATTGGATGGTATGGATATGGGTGCGGGAATTCGTCTAAAAATAATTCAAATATCTAAATATAGAGTTAAAAAATATGCCTAAATTATGGTGGACTATGTGGAAGGAAAGGAATGCACAAATTTTTGAGAGCAAGTTTGAATCTGTAATTATTTCGTACAAATGCATTTCTTTATTGATTTTTTGGTGTAACATTGCTATTGCAAATGATATTAAGAGGTGTTGATAGACTTCTTAAGTTCATTGCACATTCAGCAGTGATGTTGACCTATAAACATCTTTGAAGCACCTTCTGGTTGTGGAATTTAATAACATACCTAGTGTAATCCCACAAGTGGGTGTGCGGAGGGTAGGTCTCAGCTCAAAAAAGCAGAACAGTAAGAAAGAAAAAGAGACAACAATATACCAATTCACAAAACAAGGTAGCAACAGATATTCAATACATATTGGAGAAAGAACAACGCGATACGTAAATCATACTACTAGAAGCATGACAACACTCGACCATCTACTATCCTTCTTCCGTAATACTTGACCCTTCCTATCTAGGGTCATGGTCTCAGTCGGTTGAAGTTGTTCCATGTCCTCAGTTGTTAAAGTTGTGCTATGTCTAGTCTAATCATCTGCCCTAGTTTTTCTTCGGCTTACCCAACCTCTCATGCCTCCTCACTGGCGCATCGTTGCACCTCATTTTCACACGTCCGAACCATCTCAACATTGCTTCCCTCATCTTGTCCGCAATGGAGGTCACTCGCACCTTCTACCATATAACTCCGTTCTTAATCATCTCTCGTAGTATGTCCATGCGTCCATCTGAGCATTCTCATCTCTGCTACCTTCGTCTTTTGAACATAGGCATTCTTGACGGGCCAAACACTCAACCGCATACAATAGTTGGTCTAACTACTATGCAAACCTTTCTTTTAAGCCTTGGTGACACATTTGACTAGCCACTATTTCACCCACTTACTCCAATACAGTGTGCAACATTATCATCAATCGCTCTGTCTCCTTGAATTACGTACCTGAGATACCTAAAGCTTTCTCTCTTGGAAAGTCACTAAGCTTGCACCTCTACCTCATGTGTCAAGTCTCAAAACTTGCAGTCCAGGTACTCTGCCTTAGTCCTACTTAACTTATAACCTTTTGACTCTAGTGTTTTTCTCCAAACTTCCATCCTATCATTAACTCCACCAGGCATCTCATCAATCAATACTATGTCATCTGCTAATAATATACATCTCGACACCTCCCCTTGAATGTATCATGTCAATACATCCATCGTTAAGGCAAAAAGGAATGGGCTAAGGCTGATTCCTGGTGCAATCCCATAACGATCAGGAAGTGCTCCGAATCACTGTCCTGATTGAGTTTTGGTTCCATCATACATGTCTTTAGTTGTCCTACTATAAGCCGCATATAAACATCTAATCTATACAAACATCACATGCCTTTTCTAGGTCAATGAAAACCATGTTCCAACAATCTCCATACAAGATGGATGGCTTCAGTAGTCAAACGCCCAACATGATTGGTTGCGGACTTTCTAATACAAATATCTTTTAACAATAAATAGTTACTCCTGTAAATTAGGATTTTACCCTAATTTTTGTTTTGATTTAAAATATCATTGTATCTGTCTCGAATTTCACTATCAAATTTAGTGATTTAGTCAAAGTACCCAAAAGCGAATAACCATAGAAGGTAGATCCCACACCCATGTCATGTCGACACAAGTGCGGCACCGAATGTGAAGAGTCAATGCAACTTAGGTTTTGTTCCTTCTGCTTCTAATGGCTGGTCAATAATTTATATCCTCTAGCCGAGTCTTAGCTATATCAGTAGCTGAGTAATAGTTGTTTTCCGAAAAATGCACACTCAACTGTGGGTCTCATACTCTGATCAGTGTCTTTCTTCTACTTCTAATGGCTGGTCAATAAACTATTTCCTCTGGCCAAAGTTTTGGGTGTTCCTGTGGAGTCAAACTATTTCCTTTGTGGCCGAAGTTTTGGGTGTTTCTGTGCAGTCAAACTATTTCCTCTGGCCAAAGTTGTGCGAGGAAAAGTAGTTTGGAAATGGACTACTAATTACAATTTTTCACCTAAAGAAATGCACTATGATTCTGGTTTGACTCAATCGTTTGAGTGTTGTGGTTATATTTCAACATGTAGGTACATATATAGAGGTTATACGATCTTGAAAATATGTGGCGTTATTTAAAATAAATTTAACATTTATCACCTTCCAGCTAAGTTTTGTGTGACCTTTTTCAGTTCATCAGATTCTGCATTTGGGATGGATGTGATCAGGAGGATGCTACAGACTGGGCATCCGACCATGCTCAGCTGATTGGAGATACCCTGATGGTGGCCAATCTTCCCTTTATCTCATTCTTTAAGAGGTAAAATGGTTGTTCATCCAATGTCTGGCAATGTGAATATTTCGGACCAAGTATAGTATGGGTTCCTCTAGTGGCCTAGGAGTCTCACAATTGAAAGAAATGGAAGCTGTGGATATCTTTGCTTGATCTACTAATTTATTTTTTCCTTCGTGTTTCATATCATAGTAAACAACATATACAGCTGAATATTGCATGATCAATCTAATTAAGTTTGTTTAGTTTCTTTCAGT</genome_strand>
        <mrna_strand>CAAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAG..............................................................................................................AGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCAGATTCTGCATTTGGGATGGATGTGATCAGGAGGATGCTACAGACTGGGCATCCGACCATGCTCAGCTGATTGGAGATACCCTGATGGTGGCCAATCTTCCCCTTATCTCATTCTTTAAGAGGTAAAATGGTTGTTCATCCAATGTCTGGCAATGTGAATATTTCGGACCAAGTATAGTATGGGTTCCTCTAGTGGCCTAGGAGTCTCACAATTGAAAGAAATGGAAGCTGTGGATATCTTTGCTTGATCTACTAATTTATTTTTTCCTTCGTGTTTCATATCATAGTAAACAACATATACAGCTGAATATTGCATGATCAATCTAATTAAGTTTGTTTAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369558" ref_strand="+" ref_description="SGN-E369558 [TUS-25-F22]">
      <seq>aaagtagaacgtttttactgggaacactggtatataaatttgaatgtggctcatcatccgaaaggtcatcctggcaaatctcatctctcaaaagtagttgacccaggagagagtgcatctgaggagaggagtgctcggcgaacagtgttggaatcatctcttcgtgaagttatgtttcagataataaaatttgtaaatgagaaaaaggatcacattcctgcgatttcaaatcttgagtgtgtcacttttccctatgagatcactatctcaagttcatcagattctgcatttgggatggatgtgatcaggaggatgctacagactgggcatccgaccatgctcagctgattggagataccctgatggtggccaatcttccccttatctcattctttaagaggtaaaatggttgttcatccaatgtctggcaatgtgaatatttcggaccaagtatagtatgggttcctctagtggcctaggagtctcacaattgaaagaaatggaagctgtggatatctttgcttgatctactaatttattttttccttcgtgtttcatatcatagtaaacaacatatacagctgaatattgcatgatcaatctaattaagtttgtttagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="40059" stop="44606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40359" g_stop="40467" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40468" i_stop="40577" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40578" g_stop="40740" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="272" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40741" i_stop="43957" i_length="3217">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43958" g_stop="44315" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="630" r_length="358" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E369558" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40359" e_stop="40467"/>
          <exon e_start="40578" e_stop="40740"/>
          <exon e_start="43958" e_stop="44315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAGGTACCATACTTTTTTTTCTCCTTTTTTTTCTCAAACATTTTTTCCATATGGTTTTACAATTTGTTTCATTAGTTAATTTGTAAAGGCAGGTATAACCTTTTTTTTTGCAGAGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAGGTAATTTCCCCTTTCTCTATGTTGTGAACATGTAATTAAGTTCTGCTACTCATCATAGATCAGTATACAAGTGGTTTGCTATTATTGACTTCAAACTGTCATTATTGATTAGTTTCTGTCGGTTTTGCTTTAATGTTCTGATTTATATGGATTAGAATTCCAAAATGCATTTGTTTTTCTGGAGTTTCTTCCTGCATGAAGTTATAATCTGCTGTGGTACTGCAATTTGGTATTTATGTTATTTGTTTTCAACTTCTTGCCATAGTAAGTAGGTTATCAGCTTATATGAATATCCTTTACATGAGATATAATATCTTCAAAATCTTCAAATCTATGGGGTTAATTGACCTAAGGCAAAAAAGACTATTTTCTATGCTGATGTTCTCCTTGTCCGCATAAGTAGAAGGTGAAAGTGGAATAGGCTTATGATAACTCGTTATAGTCTTCCACCCTATGTTAGTCTCAAAGTTCCTCTTCTCCTACTTCTAGCTTAAATTGATATCAGTGCAGTTTGTTGAGTAGACACTTATTTCTGGGTCTGATAACCTGCATGACTATTTTGGCTAATAGCCTAATATGTTCTTTCCATACTGGTGGTTTCTTTTTGTCATATATGCTCTTTTGTACAAGTAATGCACTTACATGTGCCACTTTTGCTATGCTTGAATTTGTTAATATGTTAATTTGGCTAAAACTTATCTTTTTATGAAAGATTTAAAGTTTTGTAGGATGTATGTGGTTTTTGAGCCTCAAGTTTGGCCATAACACTCGCTCAGTAATTGCCTTTTGCCAAAGACACATACTCTGTCATGGGTGATGAGTCTAGTGCTTAGATCTTTGTTTCTTCTTTATACTTCAATTTTGTTCTAAGTTGCTCGAATTCAGATGCGGGTGTCTGATATGGATGCGATCTAAAGGTCAAATCCTTTATGATCTAAATTATAAGATTGGATGGTATGGATATGGGTGCGGGAATTCGTCTAAAAATAATTCAAATATCTAAATATAGAGTTAAAAAATATGCCTAAATTATGGTGGACTATGTGGAAGGAAAGGAATGCACAAATTTTTGAGAGCAAGTTTGAATCTGTAATTATTTCGTACAAATGCATTTCTTTATTGATTTTTTGGTGTAACATTGCTATTGCAAATGATATTAAGAGGTGTTGATAGACTTCTTAAGTTCATTGCACATTCAGCAGTGATGTTGACCTATAAACATCTTTGAAGCACCTTCTGGTTGTGGAATTTAATAACATACCTAGTGTAATCCCACAAGTGGGTGTGCGGAGGGTAGGTCTCAGCTCAAAAAAGCAGAACAGTAAGAAAGAAAAAGAGACAACAATATACCAATTCACAAAACAAGGTAGCAACAGATATTCAATACATATTGGAGAAAGAACAACGCGATACGTAAATCATACTACTAGAAGCATGACAACACTCGACCATCTACTATCCTTCTTCCGTAATACTTGACCCTTCCTATCTAGGGTCATGGTCTCAGTCGGTTGAAGTTGTTCCATGTCCTCAGTTGTTAAAGTTGTGCTATGTCTAGTCTAATCATCTGCCCTAGTTTTTCTTCGGCTTACCCAACCTCTCATGCCTCCTCACTGGCGCATCGTTGCACCTCATTTTCACACGTCCGAACCATCTCAACATTGCTTCCCTCATCTTGTCCGCAATGGAGGTCACTCGCACCTTCTACCATATAACTCCGTTCTTAATCATCTCTCGTAGTATGTCCATGCGTCCATCTGAGCATTCTCATCTCTGCTACCTTCGTCTTTTGAACATAGGCATTCTTGACGGGCCAAACACTCAACCGCATACAATAGTTGGTCTAACTACTATGCAAACCTTTCTTTTAAGCCTTGGTGACACATTTGACTAGCCACTATTTCACCCACTTACTCCAATACAGTGTGCAACATTATCATCAATCGCTCTGTCTCCTTGAATTACGTACCTGAGATACCTAAAGCTTTCTCTCTTGGAAAGTCACTAAGCTTGCACCTCTACCTCATGTGTCAAGTCTCAAAACTTGCAGTCCAGGTACTCTGCCTTAGTCCTACTTAACTTATAACCTTTTGACTCTAGTGTTTTTCTCCAAACTTCCATCCTATCATTAACTCCACCAGGCATCTCATCAATCAATACTATGTCATCTGCTAATAATATACATCTCGACACCTCCCCTTGAATGTATCATGTCAATACATCCATCGTTAAGGCAAAAAGGAATGGGCTAAGGCTGATTCCTGGTGCAATCCCATAACGATCAGGAAGTGCTCCGAATCACTGTCCTGATTGAGTTTTGGTTCCATCATACATGTCTTTAGTTGTCCTACTATAAGCCGCATATAAACATCTAATCTATACAAACATCACATGCCTTTTCTAGGTCAATGAAAACCATGTTCCAACAATCTCCATACAAGATGGATGGCTTCAGTAGTCAAACGCCCAACATGATTGGTTGCGGACTTTCTAATACAAATATCTTTTAACAATAAATAGTTACTCCTGTAAATTAGGATTTTACCCTAATTTTTGTTTTGATTTAAAATATCATTGTATCTGTCTCGAATTTCACTATCAAATTTAGTGATTTAGTCAAAGTACCCAAAAGCGAATAACCATAGAAGGTAGATCCCACACCCATGTCATGTCGACACAAGTGCGGCACCGAATGTGAAGAGTCAATGCAACTTAGGTTTTGTTCCTTCTGCTTCTAATGGCTGGTCAATAATTTATATCCTCTAGCCGAGTCTTAGCTATATCAGTAGCTGAGTAATAGTTGTTTTCCGAAAAATGCACACTCAACTGTGGGTCTCATACTCTGATCAGTGTCTTTCTTCTACTTCTAATGGCTGGTCAATAAACTATTTCCTCTGGCCAAAGTTTTGGGTGTTCCTGTGGAGTCAAACTATTTCCTTTGTGGCCGAAGTTTTGGGTGTTTCTGTGCAGTCAAACTATTTCCTCTGGCCAAAGTTGTGCGAGGAAAAGTAGTTTGGAAATGGACTACTAATTACAATTTTTCACCTAAAGAAATGCACTATGATTCTGGTTTGACTCAATCGTTTGAGTGTTGTGGTTATATTTCAACATGTAGGTACATATATAGAGGTTATACGATCTTGAAAATATGTGGCGTTATTTAAAATAAATTTAACATTTATCACCTTCCAGCTAAGTTTTGTGTGACCTTTTTCAGTTCATCAGATTCTGCATTTGGGATGGATGTGATCAGGAGGATGCTACAGACTGGGCATCCGACCATGCTCAGCTGATTGGAGATACCCTGATGGTGGCCAATCTTCCCTTTATCTCATTCTTTAAGAGGTAAAATGGTTGTTCATCCAATGTCTGGCAATGTGAATATTTCGGACCAAGTATAGTATGGGTTCCTCTAGTGGCCTAGGAGTCTCACAATTGAAAGAAATGGAAGCTGTGGATATCTTTGCTTGATCTACTAATTTATTTTTTCCTTCGTGTTTCATATCATAGTAAACAACATATACAGCTGAATATTGCATGATCAATCTAATTAAGTTTGTTTAGTTTCTTTCAGT</genome_strand>
        <mrna_strand>AAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAG..............................................................................................................AGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCAGATTCTGCATTTGGGATGGATGTGATCAGGAGGATGCTACAGACTGGGCATCCGACCATGCTCAGCTGATTGGAGATACCCTGATGGTGGCCAATCTTCCCCTTATCTCATTCTTTAAGAGGTAAAATGGTTGTTCATCCAATGTCTGGCAATGTGAATATTTCGGACCAAGTATAGTATGGGTTCCTCTAGTGGCCTAGGAGTCTCACAATTGAAAGAAATGGAAGCTGTGGATATCTTTGCTTGATCTACTAATTTATTTTTTCCTTCGTGTTTCATATCATAGTAAACAACATATACAGCTGAATATTGCATGATCAATCTAATTAAGTTTGTTTAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="+" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="65103" stop="65912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65403" g_stop="65621" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65403" e_stop="65621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATTTCAGGGTGGGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTCGATGCCTTGAAGTTCCGGCATGGACTAGATTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552357" ref_strand="+" ref_description="SGN-E552357 [cTSB-3-K20]">
      <seq>cattagagtgggcaatggctgaactactgaagaatccacatactttggaggaagcacaaaaagaacttgaacaaataattggcagaggcaaactaataaatgaagctgatgttccaaaattaccttacttgaggtgcatcgtgaaagaaacctttcgtatacacccacaagttcctttcttaattcagcgcaaaacagaggaagatgttgatttttgcggctatactattccaaaagactcgcaggttcttgtgaacgtatgggcaatagggcgcgactctagtctatgggaagaccctttggaatttaagccagaaaggttttgggattcagaaatagactttaaaggtcgggattttgagctgattccatttggcgctggtagaagaatttgccctggattgcctttggctatcaggatggttccagtagcactaggttcattgctaaatatatttaattggaagctacatggtggaattgcacctaaagatttggacatggaggagagttttggtattaccttggcaaaaactcaacctctgctagctatccctattccggtgtaacagttgcgataaacttaagaatccatgtagttgctaaataagcaggctttttgccatgaaaaatcaaatattgttaattttatttgaattttcaatgtagaagttgtgtttgatcatataatgtcatgaattagatctcatatacgagatactatcatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="82269" stop="50518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81969" g_stop="81238" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81237" i_stop="80638" i_length="600">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.481" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80637" g_stop="80624" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="746" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E552357" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81969" e_stop="81238"/>
          <exon e_start="80637" e_stop="80624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGAGTGGGCAATGGCTGAACTACTGAAGAATCCACATACTTTGGAGGAAGCACAAAAAGAACTTGAACAAATAATTGGCAGAGGCAAACTAATAAATGAAGCTGATGTTCCAAAATTACCTTACTTGAGGTGCATCGTGAAAGAAACCTTTCGTATACACCCACAAGTTCCTTTCTTAATTCAGCGCAAAACAGAGGAAGATGTTGATTTTTGCGGCTATACTATTCCAAAAGACTCGCAGGTTCTTGTGAACGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTGGAATTTAAGCCAGAAAGGTTTTGGGATTCAGAAATAGACTTTAAAGGTCGGGATTTTGAGCTGATTCCATTTGGCGCTGGTAGAAGAATTTGCCCTGGATTGCCTTTGGCTATCAGGATGGTTCCAGTAGCACTAGGTTCATTGCTAAATATATTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAGAGTTTTGGTATTACCTTGGCAAAAACTCAACCTCTGCTAGCTATCCCTATTCCGGTGTAACAGTTGCGATAAACTTAAGAATCCATGTAGTTGCTAAATAAGCAGGCTTTTTGCCATGAAAAATCAAATATTGTTAATTTTATTTGAATTTTCAATGTAGAAGTTGTGTTTGATCATATAATGTCATGAATTAGATCTCATATACGAGATACTATCATCTAATATTGACATCTCCGATTCGTTTACACAGTCTATTCTCTGCTTGTCAAGTGTAAAATATTAAAGCTCCCCATATAGCAACTGTTATGTCCTTTTTAAACTGCCTCCACTGTCTCTTGTTAAAGCTATTTCAAATTCAACTTGAAGTGATTTTAAAATGGAATGGAAAAGTCATAAGTTATAGAATTCTACTTCACAGTTTGCATATAATCACAAAATACATATCAAATACTTTCAAACCACTATATATAAAAGACATAAATTAGTATCTATAAGACTAAAATTCAATCATGTGGTAGCGTGTTTGCCACGTGATCCTTATCATTATCATTATCATTGGCGGGCTCAATTACAAGACCTTGGTGTCGACCATATACTTGACGTTGTCGAGTAAGTCGAGACTAGAGAGGTCTAGGAGGGGGACTTTGAGTAGAATGTAAAATAGCTATTAACTTTACGAAACAGAGCAACAGTACTAATATTGTAAAACGTATAAAATCCAGCCAATCTTTGTGTTTGTATGTCATGTATAACATTTGAAATACATTGACATTGAAAAATGGCCTATACATGACATACATATAAAAATGCTTCACTCATACAGTGAGAAACAACAAA</genome_strand>
        <mrna_strand>CATTAGAGTGGGCAATGGCTGAACTACTGAAGAATCCACATACTTTGGAGGAAGCACAAAAAGAACTTGAACAAATAATTGGCAGAGGCAAACTAATAAATGAAGCTGATGTTCCAAAATTACCTTACTTGAGGTGCATCGTGAAAGAAACCTTTCGTATACACCCACAAGTTCCTTTCTTAATTCAGCGCAAAACAGAGGAAGATGTTGATTTTTGCGGCTATACTATTCCAAAAGACTCGCAGGTTCTTGTGAACGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTGGAATTTAAGCCAGAAAGGTTTTGGGATTCAGAAATAGACTTTAAAGGTCGGGATTTTGAGCTGATTCCATTTGGCGCTGGTAGAAGAATTTGCCCTGGATTGCCTTTGGCTATCAGGATGGTTCCAGTAGCACTAGGTTCATTGCTAAATATATTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAGAGTTTTGGTATTACCTTGGCAAAAACTCAACCTCTGCTAGCTATCCCTATTCCGGTGTAACAGTTGCGATAAACTTAAGAATCCATGTAGTTGCTAAATAAGCAGGCTTTTTGCCATGAAAAATCAAATATTGTTAATTTTATTTGAATTTTCAATGTAGAAGTTGTGTTTGATCATATAATGTCATGAATTAGATCTCATATACGAGATACTATCATCTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709942" ref_strand="+" ref_description="SGN-E709942 [FA53CH03]">
      <seq>cggtatctttcaggacttcagtgaatttgatttccaacacaattttctctaaagatttgactgatccattttccgattccgctaaggaatttaaggaattggtgtggaacatcatggttgaggttggtaaaccgaatttggtggactatttcccctttcttaagaagattgatccacaaggtataaggcggcgcttgactgaatattttactaagcttcttcaccttattagtggtttgatcgatgagcggataaaggaaaggaaaatgggaaatcgggcaaatgttgatgtgttggatgcccttctcaacattagccctgatgaaatcgacaggaatcatatcgagcatctgtgtctggaaatgtttgcagcagggactgatacaatatcaaatacattagagtgggcaatggctgaactactgaagaatccacatactttggaggaagcacaaaaagaacttgaacaaataattggcagaggcaaactaataaatgaagctgatgttccaaaattaccttacttgaggtgcatcgtgaaagaaacctttcgtatacacccacaagttcctttcttaattcagcgcaaaacagaggaagatgttgatttttgcggctatactattccaaaagactcgcaggttcttgtgaacgtatgggcaatagggcgcgactctagtctatgggaagaccctttggaatttaagccagaaaggttttgggattcagaaatagactttaaaggtcgggattttgagctgattccatttggcgctggtagaagaatttgccctggattgcctttggctatcaggatggttccagtagcactaggttcattgctaaatatatttaattggaagctacatggtggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="82743" stop="81187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82445" g_stop="82087" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82086" i_stop="82007" i_length="80">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82006" g_stop="81487" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="879" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E709942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82445" e_stop="82087"/>
          <exon e_start="82006" e_stop="81487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTTTCAGGACTTCAGTGAATTTGATTTCCAACACAATTTTCTCTAAAGATTTGACTGATCCATTTTCCGATTCCGCTAAGGAATTTAAGGAATTGGTGTGGAACATCATGGTTGAGGTTGGTAAACCGAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGGCGCTTGACTGAATATTTTACTAAGCTTCTTCACCTTATTAGTGGTTTGATCGATGAGCGGATAAAGGAAAGGAAAATGGGAAATCGGGCAAATGTTGATGTGTTGGATGCCCTTCTCAACATTAGCCCTGATGAAATCGACAGGAATCATATCGAGCATCTGTGTCTGGTTAATTCATTCTCCACTCATCTTTTTCCAATCCTCGATTTTCTGCTTGTCTAATTGAAAGAAACCATTATGTTTTGCAGGAAATGTTTGCAGCAGGGACTGATACAATATCAAATACATTAGAGTGGGCAATGGCTGAACTACTGAAGAATCCACATACTTTGGAGGAAGCACAAAAAGAACTTGAACAAATAATTGGCAGAGGCAAACTAATAAATGAAGCTGATGTTCCAAAATTACCTTACTTGAGGTGCATCGTGAAAGAAACCTTTCGTATACACCCACAAGTTCCTTTCTTAATTCAGCGCAAAACAGAGGAAGATGTTGATTTTTGCGGCTATACTATTCCAAAAGACTCGCAGGTTCTTGTGAACGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTGGAATTTAAGCCAGAAAGGTTTTGGGATTCAGAAATAGACTTTAAAGGTCGGGATTTTGAGCTGATTCCATTTGGCGCTGGTAGAAGAATTTGCCCTGGATTGCCTTTGGCTATCAGGATGGTTCCAGTAGCACTAGGTTCATTGCTAAATATATTTAATTGGAAGCTACATGGTGGAATTG</genome_strand>
        <mrna_strand>CGGTATCTTTCAGGACTTCAGTGAATTTGATTTCCAACACAATTTTCTCTAAAGATTTGACTGATCCATTTTCCGATTCCGCTAAGGAATTTAAGGAATTGGTGTGGAACATCATGGTTGAGGTTGGTAAACCGAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGGCGCTTGACTGAATATTTTACTAAGCTTCTTCACCTTATTAGTGGTTTGATCGATGAGCGGATAAAGGAAAGGAAAATGGGAAATCGGGCAAATGTTGATGTGTTGGATGCCCTTCTCAACATTAGCCCTGATGAAATCGACAGGAATCATATCGAGCATCTGTGTCTG................................................................................GAAATGTTTGCAGCAGGGACTGATACAATATCAAATACATTAGAGTGGGCAATGGCTGAACTACTGAAGAATCCACATACTTTGGAGGAAGCACAAAAAGAACTTGAACAAATAATTGGCAGAGGCAAACTAATAAATGAAGCTGATGTTCCAAAATTACCTTACTTGAGGTGCATCGTGAAAGAAACCTTTCGTATACACCCACAAGTTCCTTTCTTAATTCAGCGCAAAACAGAGGAAGATGTTGATTTTTGCGGCTATACTATTCCAAAAGACTCGCAGGTTCTTGTGAACGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTGGAATTTAAGCCAGAAAGGTTTTGGGATTCAGAAATAGACTTTAAAGGTCGGGATTTTGAGCTGATTCCATTTGGCGCTGGTAGAAGAATTTGCCCTGGATTGCCTTTGGCTATCAGGATGGTTCCAGTAGCACTAGGTTCATTGCTAAATATATTTAATTGGAAGCTACATGGTGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280538" ref_strand="-" ref_description="SGN-E280538 [cLER-1-C6]">
      <seq>aagttcttgtgaatgtatgggcaatagggcgcgactctagtctatgggaagaccctttaaactttaagccggagaggttttgggagtcggatatagactttagaggtcgggattttgagctaattccatttggtgctggtagaagaatttgccctggactgcctttggctatcaggatgattccaatcgcgctaggttcattgataaatacgtttaattggaagctacatggtggaattgcacctaaagatttggacatggaggaaaaatttggtattaccctggcaaaagctcaacctctgcttgccatccctgttccattgtagatcaagaattattactacagtatgtaaaaatattctagtgtatagtgtctctaaagatcatttgcatgtctgtcaagaactgtcaaatgctatataagccattgttctatacttgtgtatccttgaaataagaccatgtcaccaccaaggattatgtaattctttcttggttttcagtaatgacaatattatttgaattaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="86250" stop="50509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85950" g_stop="85425" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85424" i_stop="85040" i_length="385">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85039" g_stop="85013" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="552" r_length="26" r_score="0.519"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E280538" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280538" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85950" e_stop="85425"/>
          <exon e_start="85039" e_stop="85013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTTGTGAATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATTTGAATTAATTATTTTTGCCAATCATGACCTATAAACAAGAACAGAGGAGTAGTTCTTAAATTATTAAATTAGAAGTTTAGTATAAAAAAGTAGTCACTCATCCTAATTAGAACCTTCTAAAATACACCGTTGAAACTATGCACACTGCAACAACACATAGATTTCAGTAAACGTACCTTTTAATTTGACCTCAACTGATTATGTCCTCCAATTTTGAGTGTGCAAACATTGGTATTTTAACTTGTATAAAATTGATAGACACATACCTCCTATGTGCACACGGTGTCCTACATGACAATTGTGTCCTTCAAGAAATTCTGTGTATTATGCCATGTAAGATGTATTTGTCTACTTATTTAATTTTATACAAGTTTAAGTGCTTACTTGTGCAGACTTAAAGTTGGAAAACATAAATATCA</genome_strand>
        <mrna_strand>AAGTTCTTGTGAATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATTTGAATTA.................................................................................................................................................................................................................................................................................................................................................................................................A-AAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398383" ref_strand="+" ref_description="SGN-E398383 [TUS-40-H20](-)">
      <seq>aatgtatgggcaatagggcgcgactttagtctttgggaagaccctttaaactttaagccggagaggttttgggagtcggatatagactttagaggtcgggattttgagctaattccatttggtgctggtagaagaatttgccctggactgcctttggctatcaggatgattccaatcgcgctaggttcattgataaatacgtttaattggaagctacatggtggaattgcacctaaagatttggacatggaggaaaaatttggtattaccctggcaaaagctcaacctttgcttgccatccctgttccattgtagatcaagaattattactacagtatgtaaaaatattttagtgtatagtgtctttaaagatcatttgcatgtctgtcaagaactgtcaaatgctatataagccattgttctatacttgtgtatccttgaaataagaccatgtcaccaccaaggattatgtaattctttcttggttttcagtaatgacaatattatttgaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="86239" stop="85124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85939" g_stop="85425" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="528"/>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E398383" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85939" e_stop="85425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATTTGAATTA</genome_strand>
        <mrna_strand>AATGTATGGGCAATAGGGCGCGACTTTAGTCTTTGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTTTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTTTAGTGTATAGTGTCTTTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATTTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732716" ref_strand="+" ref_description="SGN-E732716 [LB02DG05]">
      <seq>caatgactcacaagttcttgtgaatgtatgggcaatagggcgcgactctagtctatgggaagaccctttaaactttaagccggagaggttttgggagtcggatatagactttagaggtcgggattttgagctaattccatttggtgctggtagaagaatttgccctggactgcctttggctatcaggatgattccaatcgcgctaggttcattgataaatacgtttaattggaagctacatggtggaattgcacctaaagatttggacatggaggaaaaatttggtattaccctggcaaaagctcaacctctgcttgccatccctgttccattgtagatcaagaattattactacagtatgtaaaaatattctagtgtatagtgtctctaaagatcatttgcatgtctgtcaagaactgtcaaatgctatataagccattgttctatacttgtgtatccttgaaataagaccatgtcaccaccaaggattatgtaattctttcttggttttcagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="86260" stop="85137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85961" g_stop="85432" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E732716" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85961" e_stop="85432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGACTCACAAGTTCTTGTGAATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATT</genome_strand>
        <mrna_strand>CAATGACTCACAAGTTCTTGTGAATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470979" ref_strand="+" ref_description="SGN-E470979 [cSTB-21-B20]">
      <seq>cggcagggcagcttttagaacttccttaaatttgttgtccaacaccattttctctaaagatttgactgatccattttccgattctgctaaggaatttaaagaattggtgtggaagatcatggttgaagttggtaaacccaatttggtggactatttcccctttcttaaaaagattgatccacaaggtataagacgacgctcaactgattattttactaaaattcttcaccttatgagtgatttgatcgatgagcggctaaaggaaagggaattgggaaatcgtgaaaatgttgatgtgttagatgcccttctcgacattagccctggtgaaattgacagaaatcaaatcgagcaactgtgtttggacctgtttgcagcagggaccgatatgacgtcaaatacattggagtgggctatggctgaactactcaagaatccacatactttcgagaaagcacaagaagaactggcacaagtaattggcagaggcaaactaatagatgaagctgatgttgcaaaattaccttacttgaggtgcatcgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="87357" stop="85749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87058" g_stop="86695" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86694" i_stop="86231" i_length="464">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86230" g_stop="86049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="546" r_length="182" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E470979" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87058" e_stop="86695"/>
          <exon e_start="86230" e_stop="86049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGAGAATTGGGAAATCGTGAAAATATTGATGTGTTAGATGCCCTTCTCGACATTAGCCCAGATGAAATCGACAGGAATCAAATCGAACATCTGTGTTTGGTTAGTTTATACTCTTCGATCATTTGTTTTTTACATTTTATTTGTCACTTTTAACCTATCGGATTAGATAACTATTTTTTCATGTTCTACTCTAACATTACTTACTTATTTCTCAAATCATTTCCCGTTAATAAATATAGTATGACGAATTAGTTATATCAATCATTGTTATCTTAAGCTAGTATGACGACTCTGCATTAGTATGGGTCAAGCCAAACCTCTGTACCAAAGGCTCACAAGTCAACACCTAAGGTGATGGCTTGCTTTTTCTAAAAAGTTATCTCAATTCTCAACCAGTTGTTTGTTTGGTAGCTTGGCTAAATGCTTGTGGCAATAATATCTCTGTCTCACAACAGTGTTCAGTCCCTTTTCTTCTGTGACTGATTCAAAGCAACATATGTTTTGGAAAACTTGATTTTATATGGCATCTACTTCAAATGATCTTAAACCAGTACGTTTTGCAGGACTTGTTTGCAGCAGGGACCGATACGACTTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAACCCACGTGCTTTGGAGAAAGCACAAAAAGAGCTAGAACAAGTAATTGGCAGAGGCAAACCAATAGATGAAGCTGATGTTGCAAAATTACCTTACTTGAGGTGCATCGTAAA</genome_strand>
        <mrna_strand>CGGCAGGGCAGCTTTTAGAACTTCCTTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTTTCCGATTCTGCTAAGGAATTTAAAGAATTGGTGTGGAAGATCATGGTTGAAGTTGGTAAACCCAATTTGGTGGACTATTTCCCCTTTCTTAAAAAGATTGATCCACAAGGTATAAGACGACGCTCAACTGATTATTTTACTAAAATTCTTCACCTTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGGGAATTGGGAAATCGTGAAAATGTTGATGTGTTAGATGCCCTTCTCGACATTAGCCCTGGTGAAATTGACAGAAATCAAATCGAGCAACTGTGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGTTTGCAGCAGGGACCGATATGACGTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAATCCACATACTTTCGAGAAAGCACAAGAAGAACTGGCACAAGTAATTGGCAGAGGCAAACTAATAGATGAAGCTGATGTTGCAAAATTACCTTACTTGAGGTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471014" ref_strand="+" ref_description="SGN-E471014 [cSTB-21-J22]">
      <seq>cggcagggcagcttttagaacttccttaaatttgttgtccaacaccattttctctaaagatttgactgatccattttccgattctgctaaggaatttaaagaattggtgtggaagatcatggttgaagttggtaaacccaatttggtggactatttcccctttcttaaaaagattgatccacaaggtataagacgacgctcaactgattattttactaaaattcttcaccttatgagtgatttgatcgatgagcggctaaaggaaagggaattgggaaatcgtgaaaatgttgatgtgttagatgcccttctcgacattagccctggtgaaattgacagaaatcaaatcgagcaactgtgtttggacctgtttgcagcagggaccgatatgacgtcaaatacattggagtgggctatggctgaactactcaagaatccacatactttcgagaaagcacaagaagaactggcacaagtaattggcagaggcaaactaatagatgaagctgatgttgcaaaattaccttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="87357" stop="85765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87058" g_stop="86695" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86694" i_stop="86231" i_length="464">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86230" g_stop="86065" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="530" r_length="166" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E471014" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87058" e_stop="86695"/>
          <exon e_start="86230" e_stop="86065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGAGAATTGGGAAATCGTGAAAATATTGATGTGTTAGATGCCCTTCTCGACATTAGCCCAGATGAAATCGACAGGAATCAAATCGAACATCTGTGTTTGGTTAGTTTATACTCTTCGATCATTTGTTTTTTACATTTTATTTGTCACTTTTAACCTATCGGATTAGATAACTATTTTTTCATGTTCTACTCTAACATTACTTACTTATTTCTCAAATCATTTCCCGTTAATAAATATAGTATGACGAATTAGTTATATCAATCATTGTTATCTTAAGCTAGTATGACGACTCTGCATTAGTATGGGTCAAGCCAAACCTCTGTACCAAAGGCTCACAAGTCAACACCTAAGGTGATGGCTTGCTTTTTCTAAAAAGTTATCTCAATTCTCAACCAGTTGTTTGTTTGGTAGCTTGGCTAAATGCTTGTGGCAATAATATCTCTGTCTCACAACAGTGTTCAGTCCCTTTTCTTCTGTGACTGATTCAAAGCAACATATGTTTTGGAAAACTTGATTTTATATGGCATCTACTTCAAATGATCTTAAACCAGTACGTTTTGCAGGACTTGTTTGCAGCAGGGACCGATACGACTTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAACCCACGTGCTTTGGAGAAAGCACAAAAAGAGCTAGAACAAGTAATTGGCAGAGGCAAACCAATAGATGAAGCTGATGTTGCAAAATTACCTTACT</genome_strand>
        <mrna_strand>CGGCAGGGCAGCTTTTAGAACTTCCTTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTTTCCGATTCTGCTAAGGAATTTAAAGAATTGGTGTGGAAGATCATGGTTGAAGTTGGTAAACCCAATTTGGTGGACTATTTCCCCTTTCTTAAAAAGATTGATCCACAAGGTATAAGACGACGCTCAACTGATTATTTTACTAAAATTCTTCACCTTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGGGAATTGGGAAATCGTGAAAATGTTGATGTGTTAGATGCCCTTCTCGACATTAGCCCTGGTGAAATTGACAGAAATCAAATCGAGCAACTGTGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGTTTGCAGCAGGGACCGATATGACGTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAATCCACATACTTTCGAGAAAGCACAAGAAGAACTGGCACAAGTAATTGGCAGAGGCAAACTAATAGATGAAGCTGATGTTGCAAAATTACCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341839" ref_strand="+" ref_description="SGN-E341839 [cTOF-9-H23]">
      <seq>tcctattatgaatctcaaattaggacaaataaacgcagtggtcatttcctcgtccgtcttggctaaagaagctatgcaaaagcaagatttagccttttcaaatcggtttgttattgacgctatccgtgcctgcaatcatgatgatttctcagttatatggttacctgtcaacaactctcaatggagaacgcttcgcaagatcatgaactctcacatcttctcaggaaacaagctagatgctaatgagcatctgaggacaaaaaagatgcaggagttgattgattactgtcacaaaagtagcaaagttggtgaagcagtggatattggcagagcagcttttagaacttcattaaatttgttgtccaacaccattttctctaaagatttgactgatccattctctgattctgctaaagaatttaaggaattggtatggaagatcatggttgaggctggtaaacctaatttggtggactatttcccctttcttaagaagattgatccacaaggtataaggcgacgctccactaattattttactgagattcttcaccgtatgagtgatttgatcgatgagcggctaaaggaaagagaattgggaaatcgtgaaaatattgatgtgttagatgcccttctcgacattagcccagatgaaatcgacaggaatcaaatcgaacatctgtgtttggacttgtttgcagcagggaccgatacgacttcaaatacattggagtgggctatggctgaactactcaagaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="87760" stop="85858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87460" g_stop="87237" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87236" i_stop="87159" i_length="78">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87158" g_stop="86695" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="688" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86694" i_stop="86231" i_length="464">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86230" g_stop="86158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="761" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E341839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87460" e_stop="87237"/>
          <exon e_start="87158" e_stop="86695"/>
          <exon e_start="86230" e_stop="86158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAGGTAAATAAATATGCAATTGCGTTAAATTTGAGCGGGATAAAATGAGTCCTGAACCAGTTCCGTTTATTATATTTGCAGGAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACAAAAGTAGCAAAGTTGGTGAAGCAGTGGATATTGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGAGAATTGGGAAATCGTGAAAATATTGATGTGTTAGATGCCCTTCTCGACATTAGCCCAGATGAAATCGACAGGAATCAAATCGAACATCTGTGTTTGGTTAGTTTATACTCTTCGATCATTTGTTTTTTACATTTTATTTGTCACTTTTAACCTATCGGATTAGATAACTATTTTTTCATGTTCTACTCTAACATTACTTACTTATTTCTCAAATCATTTCCCGTTAATAAATATAGTATGACGAATTAGTTATATCAATCATTGTTATCTTAAGCTAGTATGACGACTCTGCATTAGTATGGGTCAAGCCAAACCTCTGTACCAAAGGCTCACAAGTCAACACCTAAGGTGATGGCTTGCTTTTTCTAAAAAGTTATCTCAATTCTCAACCAGTTGTTTGTTTGGTAGCTTGGCTAAATGCTTGTGGCAATAATATCTCTGTCTCACAACAGTGTTCAGTCCCTTTTCTTCTGTGACTGATTCAAAGCAACATATGTTTTGGAAAACTTGATTTTATATGGCATCTACTTCAAATGATCTTAAACCAGTACGTTTTGCAGGACTTGTTTGCAGCAGGGACCGATACGACTTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAACC</genome_strand>
        <mrna_strand>TCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAG..............................................................................GAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACAAAAGTAGCAAAGTTGGTGAAGCAGTGGATATTGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGAGAATTGGGAAATCGTGAAAATATTGATGTGTTAGATGCCCTTCTCGACATTAGCCCAGATGAAATCGACAGGAATCAAATCGAACATCTGTGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTTTGCAGCAGGGACCGATACGACTTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735790" ref_strand="+" ref_description="SGN-E735790 [LC03AB06]">
      <seq>atcatattccccacttcataagccaagaaattaaaatggattactttgacattttgctaggagtgttattcgtctgggttttggtgcgcggagtattgatttcagttagaagaagcaaaagagttgcaccaggtccattccctttgcctatcatcggaaatcttcatttgcttggtcataaaccccacatatcacttacgcaactcgcaaaaaaatatggtcctattatgaatctcaaattaggacaaataaacgcagtggtcatttcctcgtccgtcttggctaaagaagctatgcaaaagcaagatttagccttttcaaatcggtttgttattgacgctatccgtgcctgcaatcatgatgatttctcagttatatggttacctgtcaacaactctcaatggagaacgcttcgcaagatcatgaactctcacatcttctcaggaaacaagctagatgctaatgagcatctgaggacaaaaaagatgcaggagttgattgattactgtcacaaaagtagcaaagttggtgaagcagtggatattggcagagcagcttttagaacttcattaaatttgttgtccaacaccattttctctaaagatttgactgatccattctctgattctgctaaagaatttaaggaattggtatggaagatcatggttgaggctggtaaacctaatttggtggactatttcccctttcttaagaagattgatccacaaggtataaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="87980" stop="86564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87680" g_stop="87237" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87236" i_stop="87159" i_length="78">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87158" g_stop="86864" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="739" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E735790" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87680" e_stop="87237"/>
          <exon e_start="87158" e_stop="86864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAGGTAAATAAATATGCAATTGCGTTAAATTTGAGCGGGATAAAATGAGTCCTGAACCAGTTCCGTTTATTATATTTGCAGGAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACAAAAGTAGCAAAGTTGGTGAAGCAGTGGATATTGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCG</genome_strand>
        <mrna_strand>ATCATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAG..............................................................................GAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACAAAAGTAGCAAAGTTGGTGAAGCAGTGGATATTGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331575" ref_strand="+" ref_description="SGN-E331575 [cTOD-9-D12]">
      <seq>tttcttagcctccaagaaccaacatattccccacttcataagccaagaaattaaaatggattactttgacattttgctaggagtgttattcgtctgggttttggtgcgcggagtattgatttcagttagaagaagcaaaagagttgcaccaggtccattccctttgcctatcatcggaaatcttcatttgcttggtcataaaccccacatatcacttacgcaactcgcaaaaaaatatggtcctattatgaatctcaaattaggacaaataaacgcagtggtcatttcctcgtccgtcttggctaaagaagctatgcaaaagcaagatttagccttttcaaatcggtttgttattgacgctatccgtgcctgcaatcatgatgatttctcagttatatggttacctgtcaacaactctcaatggagaacgcttcgcaagatcatgaactctcacatcttctcaggaaacaagctagatgctaatgagcatctgaggacaaaaaagatgcaggagttgattgattactgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="88000" stop="86790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87700" g_stop="87237" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87236" i_stop="87159" i_length="78">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87158" g_stop="87090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="533" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E331575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87700" e_stop="87237"/>
          <exon e_start="87158" e_stop="87090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAGCCTCCAAGAACCAACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAGGTAAATAAATATGCAATTGCGTTAAATTTGAGCGGGATAAAATGAGTCCTGAACCAGTTCCGTTTATTATATTTGCAGGAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACA</genome_strand>
        <mrna_strand>TTTCTTAGCCTCCAAGAACCAACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAG..............................................................................GAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395034" ref_strand="+" ref_description="SGN-E395034 [TUS-40-H20]">
      <seq>ctttcttagcctccaagaaccaacatattccccacttcataagccaagaaattaaaatggattactttgacattttgctaggagtgttattcgtctgggttttggtgcgcggagtattgatttcagttagaagaagcaaaagagttgcaccaggtccattccctttgcctatcatcggaaatcttcatttgcttggtcataaaccccacatatcacttacgcaactcgcaaaaaaatatggtcctattatgaatctcaaattaggacaaataaacgcagtggtcatttcctcgtccgtcttggctaaagaagctatgcaaaagcaagatttagccttttcaaatcggtttgttattgacgctatccgtgcctgcaatcatgatgatttctcaattatatggttacctgtcaacaactctcaatggagaacgcttcgcaagatcatgaactctcacatcttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="88001" stop="86939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87701" g_stop="87242" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E395034" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87701" e_stop="87242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTAGCCTCCAAGAACCAACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTT</genome_strand>
        <mrna_strand>CTTTCTTAGCCTCCAAGAACCAACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAATTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="93154" stop="91747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92854" g_stop="92047" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92854" e_stop="92047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGAGTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGAAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="93813" stop="92565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93513" g_stop="92865" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93513" e_stop="92865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGTCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGATTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTACAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTTCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCATATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0035P05-ycsCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0035P05.1" temp_strand="-" temp_description="C02HBa0035P05.1  AC232777.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0035P05 sequenced_by:kribb upload_account_name:korea">
        <position start="93812" stop="92828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93512" g_stop="93128" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0035P05.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0035P05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93512" e_stop="93128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGTCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGATTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTACAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>43</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9959" PGL_stop="8869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9959" e_stop="9367"/>
            <exon e_start="9285" e_stop="8869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.931"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="9959" e_stop="9367" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9366" i_stop="9286" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="9285" e_stop="8869" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9959" stop="9367"/>
              <exon start="9285" stop="9159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9959" stop="9556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9395" stop="9367"/>
              <exon start="9285" stop="9077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9394" stop="9367"/>
              <exon start="9285" stop="8869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTTGGTGGAGGTAGGTTATGATTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTAAAAAACCCTAATCTCTTTGTTAATGATGGGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTTTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGAT : CGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTATCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTCTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCCTCCGGATATC</gDNA_template>
            <first_frame> *  S  L  V  E  V  G  Y  D  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  S  L  L  M  M  G  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  E  C  H  E  P  T  R  R  F  R  G  S  G  F  T  N  *  H  V  D  L  G  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I :   G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  I  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  S  T  D  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  L  R  I   </first_frame>
            <second_frame>  S  L  W  W  R  *  V  M  I  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  K  K  P  *  S  L  C  *  *  W  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  I  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  S  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  C  R  F  R  G   : S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  L  L  T  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  G  Y  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  *  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  G  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  S  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  F  H  E  L  T  R  R  F  R  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  :  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  Y  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  I  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  F  Y  *  P  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  P  P  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0035P05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10018" PGL_stop="10574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10018" e_stop="10574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="10018" e_stop="10574" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10018" stop="10574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10018" stop="10574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10018" stop="10472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10019" stop="10574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10019" stop="10564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10019" stop="10491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGCTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACTGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACA</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  N  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  A  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  S  A  Y  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L   </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  I  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  R  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  A  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  L  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  I  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  Y  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  L  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  C  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10206" stop="10448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPSCLRRSVLQVVARLRDSISTKESVTVRHARDCPSCHSVTKFRESIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20461" PGL_stop="17721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20461" e_stop="20123"/>
            <exon e_start="17741" e_stop="17721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.784" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20461" e_stop="20123" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.784">
            <gDNA_intron_boundary i_start="20122" i_stop="17742" i_length="2381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17741" e_stop="17721" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20461" stop="20123"/>
              <exon start="17741" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCAAACCAGAGGAAATGGTATCGGACAGCGAGCTCGTCGACCGGATTCATGAGTTTCTAAGCACCGCAGACCTCGATACCACCACCAACAATATCGTCCGGCGAAAGCTCGAAGAGGACTTCAATATCGATTTATCGGATAGAAAAGTGTTTATTCGAGAACAAATTGATCTTTACCTTGAAAGCTACTATCAAATTAACCAAGAACAAATGGAAGTAGAAAACGATCAAGAAGAAGACCCGGAGGAGGATGAAGAAGAAGAAGACCCGGAGGAAGAAGAAGACCTGGAGGAATCTAAGGCTGTTGATAAAGCAGAAGGAAAAAGTTCTGAGAAAAA : GCCTGGGAAGAAGAATGAAAG</gDNA_template>
            <first_frame> S  Q  T  R  G  N  G  I  G  Q  R  A  R  R  P  D  S  *  V  S  K  H  R  R  P  R  Y  H  H  Q  Q  Y  R  P  A  K  A  R  R  G  L  Q  Y  R  F  I  G  *  K  S  V  Y  S  R  T  N  *  S  L  P  *  K  L  L  S  N  *  P  R  T  N  G  S  R  K  R  S  R  R  R  P  G  G  G  *  R  R  R  R  P  G  G  R  R  R  P  G  G  I  *  G  C  *  *  S  R  R  K  K  F  *  E  K  :  A  W  E  E  E  *  K </first_frame>
            <second_frame>  L  K  P  E  E  M  V  S  D  S  E  L  V  D  R  I  H  E  F  L  S  T  A  D  L  D  T  T  T  N  N  I  V  R  R  K  L  E  E  D  F  N  I  D  L  S  D  R  K  V  F  I  R  E  Q  I  D  L  Y  L  E  S  Y  Y  Q  I  N  Q  E  Q  M  E  V  E  N  D  Q  E  E  D  P  E  E  D  E  E  E  E  D  P  E  E  E  E  D  L  E  E  S  K  A  V  D  K  A  E  G  K  S  S  E  K  K :   P  G  K  K  N  E   </second_frame>
            <third_frame>   S  N  Q  R  K  W  Y  R  T  A  S  S  S  T  G  F  M  S  F  *  A  P  Q  T  S  I  P  P  P  T  I  S  S  G  E  S  S  K  R  T  S  I  S  I  Y  R  I  E  K  C  L  F  E  N  K  L  I  F  T  L  K  A  T  I  K  L  T  K  N  K  W  K  *  K  T  I  K  K  K  T  R  R  R  M  K  K  K  K  T  R  R  K  K  K  T  W  R  N  L  R  L  L  I  K  Q  K  E  K  V  L  R  K   : S  L  G  R  R  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20460" stop="20123"/>
                    <exon start="17741" stop="17723"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKPEEMVSDSELVDRIHEFLSTADLDTTTNNIVRRKLEEDFNIDLSDRKVFIREQIDLYLESYYQINQEQMEVENDQEEDPEEDEEEEDPEEEEDLEESKAVDKAEGKSSEKKPGKKNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25987" PGL_stop="25540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25987" e_stop="25540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="25987" e_stop="25540" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25987" stop="25666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25986" stop="25540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCTTAATTATAAGTGTATAGCAAGAAGACATATGTTTTTCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTATCTGCAATATTTGAAGTTAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTACATGCGTATATACAATTTTTTCTCGCTTTATACAAAACAAAAACGGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGGGAATGGAGAGTGGCGAGAGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGATATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  L  N  Y  K  C  I  A  R  R  H  M  F  F  S  L  C  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  R  N  C  I  I  R  W  P  F  Y  L  Q  Y  L  K  L  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  T  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  G  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  R  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  I  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  L  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  V  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  A  I  V  *  F  V  G  L  F  I  C  N  I  *  S  *  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  A  Y  I  Q  F  F  L  A  L  Y  K  T  K  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  G  N  G  E  W  R  E  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  *  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  T  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  L  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  Y  M  R  I  Y  N  F  F  S  L  Y  T  K  Q  K  R  N  Y  T  L  L  C  I  K  R  E  R  R  A  G  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  D  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25984" stop="25772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVCILLNYKCIARRHMFFSLCTKTETQYIHFCCIKLEKIVFHYNCIIRNCIIRWPFYLQYLKLNICKLYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25794" stop="25594"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVNCIIKCITRRYTFLHAYIQFFLALYKTKTELYTFVYKAREASGNGEWRERFLGERRWQILANV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30340" PGL_stop="34228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30340" e_stop="30389"/>
            <exon e_start="30551" e_stop="30742"/>
            <exon e_start="30863" e_stop="30972"/>
            <exon e_start="31350" e_stop="31620"/>
            <exon e_start="32075" e_stop="32171"/>
            <exon e_start="32308" e_stop="32653"/>
            <exon e_start="33064" e_stop="33429"/>
            <exon e_start="33524" e_stop="33602"/>
            <exon e_start="33751" e_stop="34228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.832" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.860" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.832" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.985"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="0.979"/>
          <exon-intron don_prob="0.911" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30340" e_stop="30389" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.832" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30390" i_stop="30550" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="30551" e_stop="30742" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.860">
            <gDNA_intron_boundary i_start="30743" i_stop="30862" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="30863" e_stop="30972" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.832">
            <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="31350" e_stop="31620" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="31621" i_stop="32074" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="32075" e_stop="32171" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="32172" i_stop="32307" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32308" e_stop="32653" e_length="346"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.952">
            <gDNA_intron_boundary i_start="32654" i_stop="33063" i_length="410"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33064" e_stop="33429" e_length="366"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33524" e_stop="33602" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.897">
            <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="33751" e_stop="34228" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30340" stop="30389"/>
              <exon start="30551" stop="30742"/>
              <exon start="30863" stop="30972"/>
              <exon start="31350" stop="31534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30715" stop="30742"/>
              <exon start="30863" stop="30972"/>
              <exon start="31350" stop="31620"/>
              <exon start="32075" stop="32171"/>
              <exon start="32308" stop="32571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30716" stop="30742"/>
              <exon start="30863" stop="30972"/>
              <exon start="31350" stop="31620"/>
              <exon start="32075" stop="32171"/>
              <exon start="32308" stop="32352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32325" stop="32653"/>
              <exon start="33064" stop="33429"/>
              <exon start="33524" stop="33543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32325" stop="32653"/>
              <exon start="33064" stop="33213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33246" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33353" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33364" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317445" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTTCATTCATATATACCATTCTTTCATTTTTTTTTCCTTAGAACTTG : GTATATTTAAAAAGGGGTTTGGGTGTTTATTCTTTCACCACTTCTCCAATGGGGAAATTAGCTTTGTTTCATTTGCTTTGTGGAATCTTGATTTTTTGGGCTGTCTCTGTGGTAAAAGCAGAGGATCCTTATAAATACTTCACATGGACTGCCACTTATGGAATGGCTTCTCCATTAGGTACTCCCCAGCAG : GTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATG : GAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAG : GTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAG : GCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAG : GTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG : TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG : GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGATGTTTAAGATTTTACTATATTTATGGAACCTTGGCCGAAAGATTATATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGGCCGATGAACATGAAAGATGAGTTTTTTTAACCACCAATGTGT</gDNA_template>
            <first_frame> L  L  H  S  Y  I  P  F  F  H  F  F  F  L  R  T  W :   Y  I  *  K  G  V  W  V  F  I  L  S  P  L  L  Q  W  G  N  *  L  C  F  I  C  F  V  E  S  *  F  F  G  L  S  L  W  *  K  Q  R  I  L  I  N  T  S  H  G  L  P  L  M  E  W  L  L  H  *  V  L  P  S  R :   *  S  L  S  M  V  N  S  L  V  L  G  L  T  L  S  L  M  I  I  S  S  S  T  *  L  I  S  W  M  S  P  F  F  *  H   : G  T  E  S  N  R  E  R  T  L  G  K  T  V  F  W  E  Q  I  V  L  F  L  Q  T  E  I  T  F  T  S  S  N  L  K  I  R  L  G  A  I  L  I  S  L  Q  L  N  C  T  E  L  L  E  V  L  E  C  L  M  F  M  R  D  L  *  S  P  F  H  M  Q  N  L  L  E  I  S  V  C  L  L  V  I  G  T  R  L  V  I  R :   Y  C  G  K  Y  W  I  Q  G  S  L  F  P  S  Q  M  V  S  L  *  M  A  K  S  S  Q  L  S  L  A  I  K  :  A  K  H  I  C  S  G  F  Q  M  W  V  *  K  L  P  L  T  S  E  F  R  A  T  R  *  S  W  *  R  L  K  D  H  M  S  F  K  I  Y  T  I  L  L  M  S  T  L  V  N  L  Y  L  S  L  S  H  W  I  N  L  Q  R  T  T  T  L  L  H  L  Q  G  S  R  Q  L  F  L  L  P  P  Q  C  S  T  T  Q  T  L  K  H  P  Y  L  D  L  C  Q  L  L  Q  L  I  N  F  S  G  R  *  C  K  P  E  Q  S   : G  G  I  L  H  Q  M  Q  L  D  Q  I  L  R  V  H  S  I  M  E  K  L  H  L  Q  G  Q  F  C  L  Q  T  L  H  H  L  S  T  G  S  R  D  T  L  S  M  V  S  L  T  *  I  L  T  L  L  *  S  L  L  I  T  L  T  S  P  E  C  S  L  W  I  P  F  E  V  L  P  L  L  I  L  H  T  *  L  Q  L  C  C  H  L  L  S  M  S  S  S  K  S  F  S  K  T  M  K  T  Q  C  N  L  G  I  L  T  V  M  I  S  G  S  *   : V  S  D  Q  V  L  G  H  K  L  V  E  K  G  I  I  L  L  M  L  L  L  D  I  L  H  R :   F  I  Q  N  L  G  L  L  Y  M  C  L  W  T  T  K  E  C  G  I  *  G  L  Q  C  G  I  D  N  I  L  D  N  R  F  T  *  G  Y  T  I  Q  Q  P  V  *  L  M  N  M  T  Y  L  P  M  L  F  S  V  A  K  L  L  L  F  D  I  L  N  L  V  S  Y  F  L  C  F  L  G  H  K  R  L  T  T  R  D  A  A  G  K  R  N  Y  L  L  H  M  L  *  H  I  A  S  K  Y  F  C  E  *  L  H  I  *  C  L  R  F  Y  Y  I  Y  G  T  L  A  E  R  L  Y  I  K  Q  P  Y  E  T  F  H  D  K  *  C  I  R  P  M  N  M  K  D  E  F  F  *  P  P  M  C </first_frame>
            <second_frame>  C  F  I  H  I  Y  H  S  F  I  F  F  S  L  E  L   : G  I  F  K  K  G  F  G  C  L  F  F  H  H  F  S  N  G  E  I  S  F  V  S  F  A  L  W  N  L  D  F  L  G  C  L  C  G  K  S  R  G  S  L  *  I  L  H  M  D  C  H  L  W  N  G  F  S  I  R  Y  S  P  A   : G  N  P  Y  Q  W  S  I  P  W  S  *  A  *  P  C  H  *  *  *  Y  R  P  Q  L  D  *  *  V  G  *  A  P  S  F  D  M  :  E  R  N  Q  T  E  K  E  L  L  A  R  R  C  F  G  N  K  L  S  Y  S  S  K  Q  K  L  H  L  Q  V  P  T  *  R  S  D  W  E  L  Y  L  F  P  F  N  S  T  A  Q  S  C  W  R  F  W  S  A  *  C  L  C  E  I  C  N  P  R  S  I  C  K  T  C  W  R  F  Q  F  A  Y  W  *  L  V  Q  D  *  S  *   : G  I  A  A  N  I  G  F  R  E  V  S  S  L  P  R  W  S  P  Y  K  W  P  K  A  V  N  F  H  W  R  S  R :   Q  N  I  Y  V  Q  D  F  K  C  G  F  E  N  Y  H  *  L  Q  N  S  G  P  Q  D  E  A  G  R  G  *  R  I  T  C  H  S  K  F  I  R  F  F  *  C  P  R  W  S  I  F  I  Y  P  C  H  I  G  S  I  S  K  G  L  L  H  C  C  I  Y  K  V  H  D  N  C  S  Y  F  H  L  S  A  P  L  H  K  L  S  N  T  R  I  W  T  C  A  S  C  S  S  *  S  I  S  V  V  V  D  A  S  Q  N  N  Q  :  V  E  S  Y  I  K  C  S  *  T  K  S  S  G  F  I  P  L  W  K  N  Y  T  F  K  D  N  F  A  C  K  L  C  T  T  Y  Q  R  E  A  E  I  R  C  Q  W  Y  L  L  H  K  S  *  H  S  S  E  A  C  *  S  L  *  H  P  R  S  V  H  F  G  F  H  S  K  C  S  H  C  *  F  S  T  P  S  Y  S  C  V  A  I  F  S  P  *  V  P  R  N  R  F  P  K  Q  *  R  H  N  A  I  L  A  S  *  R  L  *  F  L  G  R  R  :  F  R  I  R  Y  L  D  T  S  *  *  K  R  V  *  S  C  *  C  S  Y  *  T  Y  Y  T   : G  L  S  K  I  L  D  C  Y  I  C  V  F  G  Q  P  R  N  V  E  F  E  V  C  N  V  G  *  T  I  S  W  T  T  G  L  P  E  G  I  Q  S  N  S  Q  F  S  *  *  I  *  H  T  Y  Q  C  S  S  L  W  Q  S  C  C  S  S  T  S  L  I  W  F  H  I  F  Y  V  F  L  V  I  R  G  *  L  Q  E  M  P  P  A  K  E  T  T  C  S  I  C  C  N  T  *  Q  A  N  I  F  V  S  N  F  I  F  D  V  *  D  F  T  I  F  M  E  P  W  P  K  D  Y  I  L  N  S  L  M  K  H  S  M  I  N  D  V  *  G  R  *  T  *  K  M  S  F  F  N  H  Q  C   </second_frame>
            <third_frame>   A  S  F  I  Y  T  I  L  S  F  F  F  P  *  N  L  :  V  Y  L  K  R  G  L  G  V  Y  S  F  T  T  S  P  M  G  K  L  A  L  F  H  L  L  C  G  I  L  I  F  W  A  V  S  V  V  K  A  E  D  P  Y  K  Y  F  T  W  T  A  T  Y  G  M  A  S  P  L  G  T  P  Q  Q  :  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  I  V  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  P  N  R  N  Y  I  Y  K  F  Q  P  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  A  G  G  F  G  V  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  T  S  H  K  :  V  L  R  Q  I  L  D  S  G  K  S  L  P  F  P  D  G  L  L  I  N  G  Q  K  Q  S  T  F  T  G  D  Q   : G  K  T  Y  M  F  R  I  S  N  V  G  L  K  T  T  I  N  F  R  I  Q  G  H  K  M  K  L  V  E  V  E  G  S  H  V  I  Q  N  L  Y  D  S  F  D  V  H  V  G  Q  S  L  S  I  L  V  T  L  D  Q  S  P  K  D  Y  Y  I  V  A  S  T  R  F  T  T  T  V  L  T  S  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  A  A  P  V  N  Q  F  Q  W  S  L  M  Q  A  R  T  I  R :   W  N  L  T  S  N  A  A  R  P  N  P  Q  G  S  F  H  Y  G  K  I  T  P  S  R  T  I  L  L  A  N  S  A  P  L  I  N  G  K  Q  R  Y  A  V  N  G  I  S  Y  I  N  P  D  T  P  L  K  L  A  D  H  F  N  I  P  G  V  F  T  L  D  S  I  R  S  A  P  T  A  D  S  P  H  L  A  T  A  V  L  P  S  S  L  H  E  F  L  E  I  V  F  Q  N  N  E  D  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G :   F  G  S  G  T  W  T  Q  A  S  R  K  G  Y  N  L  V  D  A  L  T  R  H  T  T  Q  :  V  Y  P  K  S  W  T  A  I  Y  V  S  L  D  N  Q  G  M  W  N  L  R  S  A  M  W  D  R  Q  Y  L  G  Q  Q  V  Y  L  R  V  Y  N  P  T  A  S  L  A  N  E  Y  D  I  P  T  N  A  L  L  C  G  K  A  A  A  L  R  H  P  *  F  G  F  I  F  F  M  F  S  W  S  *  E  V  D  Y  K  R  C  R  R  Q  K  K  L  L  A  P  Y  V  V  T  H  S  K  Q  I  F  L  *  V  T  S  Y  L  M  F  K  I  L  L  Y  L  W  N  L  G  R  K  I  I  Y  *  T  A  L  *  N  I  P  *  *  M  M  Y  K  A  D  E  H  E  R  *  V  F  L  T  T  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30384" stop="30389"/>
                    <exon start="30551" stop="30742"/>
                    <exon start="30863" stop="30972"/>
                    <exon start="31350" stop="31620"/>
                    <exon start="32075" stop="32171"/>
                    <exon start="32308" stop="32653"/>
                    <exon start="33064" stop="33429"/>
                    <exon start="33524" stop="33602"/>
                    <exon start="33751" stop="33957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLVYLKRGLGVYSFTTSPMGKLALFHLLCGILIFWAVSVVKAEDPYKYFTWTATYGMASPLGTPQQVILINGQFPGPRLDLVTNDNIVLNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPPNRNYIYKFQPKDQIGSYTYFPSTQLHRAAGGFGVLNVYARSVIPVPYAKPAGDFSLLIGDWYKTSHKVLRQILDSGKSLPFPDGLLINGQKQSTFTGDQGKTYMFRISNVGLKTTINFRIQGHKMKLVEVEGSHVIQNLYDSFDVHVGQSLSILVTLDQSPKDYYIVASTRFTTTVLTSTSVLHYTNSQTPVSGPVPAAPVNQFQWSLMQARTIRWNLTSNAARPNPQGSFHYGKITPSRTILLANSAPLINGKQRYAVNGISYINPDTPLKLADHFNIPGVFTLDSIRSAPTADSPHLATAVLPSSLHEFLEIVFQNNEDTMQSWHLDGYDFWVVGFGSGTWTQASRKGYNLVDALTRHTTQVYPKSWTAIYVSLDNQGMWNLRSAMWDRQYLGQQVYLRVYNPTASLANEYDIPTNALLCGKAAALRHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30848" e_stop="30972"/>
            <exon e_start="31350" e_stop="31620"/>
            <exon e_start="32075" e_stop="32171"/>
            <exon e_start="32308" e_stop="32653"/>
            <exon e_start="33064" e_stop="33429"/>
            <exon e_start="33524" e_stop="33602"/>
            <exon e_start="33751" e_stop="34228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30848" e_stop="30972" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.832">
            <gDNA_intron_boundary i_start="30973" i_stop="31349" i_length="377"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31350" e_stop="31620" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="31621" i_stop="32074" i_length="454"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32075" e_stop="32171" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="32172" i_stop="32307" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32308" e_stop="32653" e_length="346"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.952">
            <gDNA_intron_boundary i_start="32654" i_stop="33063" i_length="410"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33064" e_stop="33429" e_length="366"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33430" i_stop="33523" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33524" e_stop="33602" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.897">
            <gDNA_intron_boundary i_start="33603" i_stop="33750" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="33751" e_stop="34228" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30848" stop="30972"/>
              <exon start="31350" stop="31620"/>
              <exon start="32075" stop="32171"/>
              <exon start="32308" stop="32636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32325" stop="32653"/>
              <exon start="33064" stop="33429"/>
              <exon start="33524" stop="33543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32325" stop="32653"/>
              <exon start="33064" stop="33213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33246" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33353" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33364" stop="33429"/>
              <exon start="33524" stop="33602"/>
              <exon start="33751" stop="34085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317445" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGAACTTGTAAGGTAATCCTTATCAATGGTCAATTCCCTGGTCCTAGGCTTGACCTTGTCACTAATGATAATATCGTCCTCAACTTGATTAATAAGTTGGATGAGCCCCTTCTTTTGACATG : GAACGGAATCAAACAGAGAAAGAACTCTTGGCAAGACGGTGTTTTGGGAACAAATTGTCCTATTCCTCCAAACAGAAATTACATTTACAAGTTCCAACCTAAAGATCAGATTGGGAGCTATACTTATTTCCCTTCAACTCAACTGCACAGAGCTGCTGGAGGTTTTGGAGTGCTTAATGTTTATGCGAGATCTGTAATCCCCGTTCCATATGCAAAACCTGCTGGAGATTTCAGTTTGCTTATTGGTGATTGGTACAAGACTAGTCATAAG : GTATTGCGGCAAATATTGGATTCAGGGAAGTCTCTTCCCTTCCCAGATGGTCTCCTTATAAATGGCCAAAAGCAGTCAACTTTCACTGGCGATCAAG : GCAAAACATATATGTTCAGGATTTCAAATGTGGGTTTGAAAACTACCATTAACTTCAGAATTCAGGGCCACAAGATGAAGCTGGTAGAGGTTGAAGGATCACATGTCATTCAAAATTTATACGATTCTTTTGATGTCCACGTTGGTCAATCTTTATCTATCCTTGTCACATTGGATCAATCTCCAAAGGACTACTACATTGTTGCATCTACAAGGTTCACGACAACTGTTCTTACTTCCACCTCAGTGCTCCACTACACAAACTCTCAAACACCCGTATCTGGACCTGTGCCAGCTGCTCCAGTTAATCAATTTCAGTGGTCGTTGATGCAAGCCAGAACAATCAG : GTGGAATCTTACATCAAATGCAGCTAGACCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACACCTTCAAGGACAATTTTGCTTGCAAACTCTGCACCACTTATCAACGGGAAGCAGAGATACGCTGTCAATGGTATCTCTTACATAAATCCTGACACTCCTCTGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGG : TTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAG : GTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGACAACCAAGGAATGTGGAATTTGAGGTCTGCAATGTGGGATAGACAATATCTTGGACAACAGGTTTACCTGAGGGTATACAATCCAACAGCCAGTTTAGCTAATGAATATGACATACCTACCAATGCTCTTCTCTGTGGCAAAGCTGCTGCTCTTCGACATCCTTAATTTGGTTTCATATTTTTTATGTTTTCTTGGTCATAAGAGGTTGACTACAAGAGATGCCGCCGGCAAAAGAAACTACTTGCTCCATATGTTGTAACACATAGCAAGCAAATATTTTTGTGAGTAACTTCATATTTGATGTTTAAGATTTTACTATATTTATGGAACCTTGGCCGAAAGATTATATATTAAACAGCCTTATGAAACATTCCATGATAAATGATGTATAAGGCCGATGAACATGAAAGATGAGTTTTTTTAACCACCAATGTGT</gDNA_template>
            <first_frame> L  *  T  C  K  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  I  V  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  P  N  R  N  Y  I  Y  K  F  Q  P  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  A  G  G  F  G  V  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  T  S  H  K  :  V  L  R  Q  I  L  D  S  G  K  S  L  P  F  P  D  G  L  L  I  N  G  Q  K  Q  S  T  F  T  G  D  Q   : G  K  T  Y  M  F  R  I  S  N  V  G  L  K  T  T  I  N  F  R  I  Q  G  H  K  M  K  L  V  E  V  E  G  S  H  V  I  Q  N  L  Y  D  S  F  D  V  H  V  G  Q  S  L  S  I  L  V  T  L  D  Q  S  P  K  D  Y  Y  I  V  A  S  T  R  F  T  T  T  V  L  T  S  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  A  A  P  V  N  Q  F  Q  W  S  L  M  Q  A  R  T  I  R :   W  N  L  T  S  N  A  A  R  P  N  P  Q  G  S  F  H  Y  G  K  I  T  P  S  R  T  I  L  L  A  N  S  A  P  L  I  N  G  K  Q  R  Y  A  V  N  G  I  S  Y  I  N  P  D  T  P  L  K  L  A  D  H  F  N  I  P  G  V  F  T  L  D  S  I  R  S  A  P  T  A  D  S  P  H  L  A  T  A  V  L  P  S  S  L  H  E  F  L  E  I  V  F  Q  N  N  E  D  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G :   F  G  S  G  T  W  T  Q  A  S  R  K  G  Y  N  L  V  D  A  L  T  R  H  T  T  Q  :  V  Y  P  K  S  W  T  A  I  Y  V  S  L  D  N  Q  G  M  W  N  L  R  S  A  M  W  D  R  Q  Y  L  G  Q  Q  V  Y  L  R  V  Y  N  P  T  A  S  L  A  N  E  Y  D  I  P  T  N  A  L  L  C  G  K  A  A  A  L  R  H  P  *  F  G  F  I  F  F  M  F  S  W  S  *  E  V  D  Y  K  R  C  R  R  Q  K  K  L  L  A  P  Y  V  V  T  H  S  K  Q  I  F  L  *  V  T  S  Y  L  M  F  K  I  L  L  Y  L  W  N  L  G  R  K  I  I  Y  *  T  A  L  *  N  I  P  *  *  M  M  Y  K  A  D  E  H  E  R  *  V  F  L  T  T  N  V  </first_frame>
            <second_frame>  F  E  L  V  R  *  S  L  S  M  V  N  S  L  V  L  G  L  T  L  S  L  M  I  I  S  S  S  T  *  L  I  S  W  M  S  P  F  F  *  H   : G  T  E  S  N  R  E  R  T  L  G  K  T  V  F  W  E  Q  I  V  L  F  L  Q  T  E  I  T  F  T  S  S  N  L  K  I  R  L  G  A  I  L  I  S  L  Q  L  N  C  T  E  L  L  E  V  L  E  C  L  M  F  M  R  D  L  *  S  P  F  H  M  Q  N  L  L  E  I  S  V  C  L  L  V  I  G  T  R  L  V  I  R :   Y  C  G  K  Y  W  I  Q  G  S  L  F  P  S  Q  M  V  S  L  *  M  A  K  S  S  Q  L  S  L  A  I  K  :  A  K  H  I  C  S  G  F  Q  M  W  V  *  K  L  P  L  T  S  E  F  R  A  T  R  *  S  W  *  R  L  K  D  H  M  S  F  K  I  Y  T  I  L  L  M  S  T  L  V  N  L  Y  L  S  L  S  H  W  I  N  L  Q  R  T  T  T  L  L  H  L  Q  G  S  R  Q  L  F  L  L  P  P  Q  C  S  T  T  Q  T  L  K  H  P  Y  L  D  L  C  Q  L  L  Q  L  I  N  F  S  G  R  *  C  K  P  E  Q  S   : G  G  I  L  H  Q  M  Q  L  D  Q  I  L  R  V  H  S  I  M  E  K  L  H  L  Q  G  Q  F  C  L  Q  T  L  H  H  L  S  T  G  S  R  D  T  L  S  M  V  S  L  T  *  I  L  T  L  L  *  S  L  L  I  T  L  T  S  P  E  C  S  L  W  I  P  F  E  V  L  P  L  L  I  L  H  T  *  L  Q  L  C  C  H  L  L  S  M  S  S  S  K  S  F  S  K  T  M  K  T  Q  C  N  L  G  I  L  T  V  M  I  S  G  S  *   : V  S  D  Q  V  L  G  H  K  L  V  E  K  G  I  I  L  L  M  L  L  L  D  I  L  H  R :   F  I  Q  N  L  G  L  L  Y  M  C  L  W  T  T  K  E  C  G  I  *  G  L  Q  C  G  I  D  N  I  L  D  N  R  F  T  *  G  Y  T  I  Q  Q  P  V  *  L  M  N  M  T  Y  L  P  M  L  F  S  V  A  K  L  L  L  F  D  I  L  N  L  V  S  Y  F  L  C  F  L  G  H  K  R  L  T  T  R  D  A  A  G  K  R  N  Y  L  L  H  M  L  *  H  I  A  S  K  Y  F  C  E  *  L  H  I  *  C  L  R  F  Y  Y  I  Y  G  T  L  A  E  R  L  Y  I  K  Q  P  Y  E  T  F  H  D  K  *  C  I  R  P  M  N  M  K  D  E  F  F  *  P  P  M  C </second_frame>
            <third_frame>   L  N  L  *  G  N  P  Y  Q  W  S  I  P  W  S  *  A  *  P  C  H  *  *  *  Y  R  P  Q  L  D  *  *  V  G  *  A  P  S  F  D  M  :  E  R  N  Q  T  E  K  E  L  L  A  R  R  C  F  G  N  K  L  S  Y  S  S  K  Q  K  L  H  L  Q  V  P  T  *  R  S  D  W  E  L  Y  L  F  P  F  N  S  T  A  Q  S  C  W  R  F  W  S  A  *  C  L  C  E  I  C  N  P  R  S  I  C  K  T  C  W  R  F  Q  F  A  Y  W  *  L  V  Q  D  *  S  *   : G  I  A  A  N  I  G  F  R  E  V  S  S  L  P  R  W  S  P  Y  K  W  P  K  A  V  N  F  H  W  R  S  R :   Q  N  I  Y  V  Q  D  F  K  C  G  F  E  N  Y  H  *  L  Q  N  S  G  P  Q  D  E  A  G  R  G  *  R  I  T  C  H  S  K  F  I  R  F  F  *  C  P  R  W  S  I  F  I  Y  P  C  H  I  G  S  I  S  K  G  L  L  H  C  C  I  Y  K  V  H  D  N  C  S  Y  F  H  L  S  A  P  L  H  K  L  S  N  T  R  I  W  T  C  A  S  C  S  S  *  S  I  S  V  V  V  D  A  S  Q  N  N  Q  :  V  E  S  Y  I  K  C  S  *  T  K  S  S  G  F  I  P  L  W  K  N  Y  T  F  K  D  N  F  A  C  K  L  C  T  T  Y  Q  R  E  A  E  I  R  C  Q  W  Y  L  L  H  K  S  *  H  S  S  E  A  C  *  S  L  *  H  P  R  S  V  H  F  G  F  H  S  K  C  S  H  C  *  F  S  T  P  S  Y  S  C  V  A  I  F  S  P  *  V  P  R  N  R  F  P  K  Q  *  R  H  N  A  I  L  A  S  *  R  L  *  F  L  G  R  R  :  F  R  I  R  Y  L  D  T  S  *  *  K  R  V  *  S  C  *  C  S  Y  *  T  Y  Y  T   : G  L  S  K  I  L  D  C  Y  I  C  V  F  G  Q  P  R  N  V  E  F  E  V  C  N  V  G  *  T  I  S  W  T  T  G  L  P  E  G  I  Q  S  N  S  Q  F  S  *  *  I  *  H  T  Y  Q  C  S  S  L  W  Q  S  C  C  S  S  T  S  L  I  W  F  H  I  F  Y  V  F  L  V  I  R  G  *  L  Q  E  M  P  P  A  K  E  T  T  C  S  I  C  C  N  T  *  Q  A  N  I  F  V  S  N  F  I  F  D  V  *  D  F  T  I  F  M  E  P  W  P  K  D  Y  I  L  N  S  L  M  K  H  S  M  I  N  D  V  *  G  R  *  T  *  K  M  S  F  F  N  H  Q  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30854" stop="30972"/>
                    <exon start="31350" stop="31620"/>
                    <exon start="32075" stop="32171"/>
                    <exon start="32308" stop="32653"/>
                    <exon start="33064" stop="33429"/>
                    <exon start="33524" stop="33602"/>
                    <exon start="33751" stop="33957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1482</number_coding_nucleotides>
                  <number_encoded_amino_acids>494</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCKVILINGQFPGPRLDLVTNDNIVLNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPPNRNYIYKFQPKDQIGSYTYFPSTQLHRAAGGFGVLNVYARSVIPVPYAKPAGDFSLLIGDWYKTSHKVLRQILDSGKSLPFPDGLLINGQKQSTFTGDQGKTYMFRISNVGLKTTINFRIQGHKMKLVEVEGSHVIQNLYDSFDVHVGQSLSILVTLDQSPKDYYIVASTRFTTTVLTSTSVLHYTNSQTPVSGPVPAAPVNQFQWSLMQARTIRWNLTSNAARPNPQGSFHYGKITPSRTILLANSAPLINGKQRYAVNGISYINPDTPLKLADHFNIPGVFTLDSIRSAPTADSPHLATAVLPSSLHEFLEIVFQNNEDTMQSWHLDGYDFWVVGFGSGTWTQASRKGYNLVDALTRHTTQVYPKSWTAIYVSLDNQGMWNLRSAMWDRQYLGQQVYLRVYNPTASLANEYDIPTNALLCGKAAALRHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33231" e_stop="33792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33231" e_stop="33792" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33231" stop="33792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGCTTGCTGATCACTTTAACATCCCCGGAGTGTTCACTTTGGATTCCATTCGAAGTGCTCCCACTGCTGATTCTCCACACCTAGCTACAGCTGTGTTGCCATCTTCTCTCCATGAGTTCCTCGAAATCGTTTTCCAAAACAATGAAGACACAATGCAATCTTGGCATCTTGACGGTTATGATTTCTGGGTCGTAGGGTATGTCGCAATCATCAAAAGGTTTTGATTCACTGCACCTGGCGTCGTAAGGTTGGCTTAGTTTTCTTACTCTTCCTGTTGTAAATATTTGCAGTTTCGGATCAGGTACTTGGACACAAGCTAGTAGAAAAGGGTATAATCTTGTTGATGCTCTTACTAGACATACTACACAGGTAATTCCAGCTTCCTCCACGACTATAAAAATCCTCAACACTGTTAATGTATGTCATTTTTTATCATTTTAGTCAAGTACTATTGATGATTATTCATGGAAAGCTGAATTTGCAGTTTCTAAGCTTCAGGATGAAATGTTTGTTGCAGGTTTATCCAAAATCTTGGACTGCTATATATGTGTCTTTGGAC</gDNA_template>
            <first_frame> *  S  L  L  I  T  L  T  S  P  E  C  S  L  W  I  P  F  E  V  L  P  L  L  I  L  H  T  *  L  Q  L  C  C  H  L  L  S  M  S  S  S  K  S  F  S  K  T  M  K  T  Q  C  N  L  G  I  L  T  V  M  I  S  G  S  *  G  M  S  Q  S  S  K  G  F  D  S  L  H  L  A  S  *  G  W  L  S  F  L  T  L  P  V  V  N  I  C  S  F  G  S  G  T  W  T  Q  A  S  R  K  G  Y  N  L  V  D  A  L  T  R  H  T  T  Q  V  I  P  A  S  S  T  T  I  K  I  L  N  T  V  N  V  C  H  F  L  S  F  *  S  S  T  I  D  D  Y  S  W  K  A  E  F  A  V  S  K  L  Q  D  E  M  F  V  A  G  L  S  K  I  L  D  C  Y  I  C  V  F  G  </first_frame>
            <second_frame>  E  A  C  *  S  L  *  H  P  R  S  V  H  F  G  F  H  S  K  C  S  H  C  *  F  S  T  P  S  Y  S  C  V  A  I  F  S  P  *  V  P  R  N  R  F  P  K  Q  *  R  H  N  A  I  L  A  S  *  R  L  *  F  L  G  R  R  V  C  R  N  H  Q  K  V  L  I  H  C  T  W  R  R  K  V  G  L  V  F  L  L  F  L  L  *  I  F  A  V  S  D  Q  V  L  G  H  K  L  V  E  K  G  I  I  L  L  M  L  L  L  D  I  L  H  R  *  F  Q  L  P  P  R  L  *  K  S  S  T  L  L  M  Y  V  I  F  Y  H  F  S  Q  V  L  L  M  I  I  H  G  K  L  N  L  Q  F  L  S  F  R  M  K  C  L  L  Q  V  Y  P  K  S  W  T  A  I  Y  V  S  L  D </second_frame>
            <third_frame>   K  L  A  D  H  F  N  I  P  G  V  F  T  L  D  S  I  R  S  A  P  T  A  D  S  P  H  L  A  T  A  V  L  P  S  S  L  H  E  F  L  E  I  V  F  Q  N  N  E  D  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G  Y  V  A  I  I  K  R  F  *  F  T  A  P  G  V  V  R  L  A  *  F  S  Y  S  S  C  C  K  Y  L  Q  F  R  I  R  Y  L  D  T  S  *  *  K  R  V  *  S  C  *  C  S  Y  *  T  Y  Y  T  G  N  S  S  F  L  H  D  Y  K  N  P  Q  H  C  *  C  M  S  F  F  I  I  L  V  K  Y  Y  *  *  L  F  M  E  S  *  I  C  S  F  *  A  S  G  *  N  V  C  C  R  F  I  Q  N  L  G  L  L  Y  M  C  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33233" stop="33457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLADHFNIPGVFTLDSIRSAPTADSPHLATAVLPSSLHEFLEIVFQNNEDTMQSWHLDGYDFWVVGYVAIIKRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33480" stop="33674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWLSFLTLPVVNICSFGSGTWTQASRKGYNLVDALTRHTTQVIPASSTTIKILNTVNVCHFLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37619" PGL_stop="44315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37619" e_stop="37765"/>
            <exon e_start="37862" e_stop="37898"/>
            <exon e_start="38383" e_stop="38468"/>
            <exon e_start="39038" e_stop="39133"/>
            <exon e_start="40305" e_stop="40467"/>
            <exon e_start="40578" e_stop="40740"/>
            <exon e_start="43958" e_stop="44315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.880" e_score="0.857"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.999" e_score="0.965"/>
          <exon-intron don_prob="0.652" acc_prob="0.343" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.963"/>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.857">
            <gDNA_exon_boundary e_start="37619" e_stop="37765" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.880">
            <gDNA_intron_boundary i_start="37766" i_stop="37861" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37862" e_stop="37898" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37899" i_stop="38382" i_length="484"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="38383" e_stop="38468" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.876" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38469" i_stop="39037" i_length="569"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="39038" e_stop="39133" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.652" acc_prob="0.343">
            <gDNA_intron_boundary i_start="39134" i_stop="40304" i_length="1171"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="40305" e_stop="40467" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40468" i_stop="40577" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40578" e_stop="40740" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40741" i_stop="43957" i_length="3217"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="43958" e_stop="44315" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37619" stop="37765"/>
              <exon start="37862" stop="37898"/>
              <exon start="38383" stop="38468"/>
              <exon start="39038" stop="39133"/>
              <exon start="40305" stop="40467"/>
              <exon start="40578" stop="40740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37619" stop="37765"/>
              <exon start="37862" stop="37898"/>
              <exon start="38383" stop="38468"/>
              <exon start="39038" stop="39133"/>
              <exon start="40305" stop="40401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40358" stop="40467"/>
              <exon start="40578" stop="40740"/>
              <exon start="43958" stop="44315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40359" stop="40467"/>
              <exon start="40578" stop="40740"/>
              <exon start="43958" stop="44315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGCACGGCGAAATTCAAACTGCAACTTTAGGGTTTACTATAATTATAATTTCAATTATCTCCTCGATCAATCGCGGCTTTGTTTGTGAAGTACTAAAGAGGAATCATCAATCATGAATTGCGAAGTTTGTCAGCTAAAAGAACTT : GATGTGGAGCACTTTGAGATACGAGAAGTCCTCCGAT : GTATTTTGCATACAATTATGTTCCATAGAGCCTTAGGCCTGCTGCGGCCGAAGGATGTTGATTTGGAACTTTTTGACATTACATAT : ACACAGTGTGGTGATGTGGAGGTTGAAAAGAAAATTGAAGAGAAGATTACCCTATTCATTGATAGAGTCGAGAAGCACCCTAACAGGAAAAATCAG : ATTTGCCTATCCTTCTGTGAAGTCAAAAACAAACAAGCCTCGTGGTTCACTACCAAAGTAGAACGTTTTTACTGGGAACACTGGTATATAAATTTGAATGTGGCTCATCATCCGAAAGGTCATCCTGGCAAATCTCATCTCTCAAAAGTAGTTGACCCAGGAG : AGAGTGCATCTGAGGAGAGGAGTGCTCGGCGAACAGTGTTGGAATCATCTCTTCGTGAAGTTATGTTTCAGATAATAAAATTTGTAAATGAGAAAAAGGATCACATTCCTGCGATTTCAAATCTTGAGTGTGTCACTTTTCCCTATGAGATCACTATCTCAAG : TTCATCAGATTCTGCATTTGGGATGGATGTGATCAGGAGGATGCTACAGACTGGGCATCCGACCATGCTCAGCTGATTGGAGATACCCTGATGGTGGCCAATCTTCCCTTTATCTCATTCTTTAAGAGGTAAAATGGTTGTTCATCCAATGTCTGGCAATGTGAATATTTCGGACCAAGTATAGTATGGGTTCCTCTAGTGGCCTAGGAGTCTCACAATTGAAAGAAATGGAAGCTGTGGATATCTTTGCTTGATCTACTAATTTATTTTTTCCTTCGTGTTTCATATCATAGTAAACAACATATACAGCTGAATATTGCATGATCAATCTAATTAAGTTTGTTTAGTTTCTTTCAGT</gDNA_template>
            <first_frame> F  A  R  R  N  S  N  C  N  F  R  V  Y  Y  N  Y  N  F  N  Y  L  L  D  Q  S  R  L  C  L  *  S  T  K  E  E  S  S  I  M  N  C  E  V  C  Q  L  K  E  L  :  D  V  E  H  F  E  I  R  E  V  L  R   : C  I  L  H  T  I  M  F  H  R  A  L  G  L  L  R  P  K  D  V  D  L  E  L  F  D  I  T  Y  :  T  Q  C  G  D  V  E  V  E  K  K  I  E  E  K  I  T  L  F  I  D  R  V  E  K  H  P  N  R  K  N  Q  :  I  C  L  S  F  C  E  V  K  N  K  Q  A  S  W  F  T  T  K  V  E  R  F  Y  W  E  H  W  Y  I  N  L  N  V  A  H  H  P  K  G  H  P  G  K  S  H  L  S  K  V  V  D  P  G   : E  S  A  S  E  E  R  S  A  R  R  T  V  L  E  S  S  L  R  E  V  M  F  Q  I  I  K  F  V  N  E  K  K  D  H  I  P  A  I  S  N  L  E  C  V  T  F  P  Y  E  I  T  I  S  S :   S  S  D  S  A  F  G  M  D  V  I  R  R  M  L  Q  T  G  H  P  T  M  L  S  *  L  E  I  P  *  W  W  P  I  F  P  L  S  H  S  L  R  G  K  M  V  V  H  P  M  S  G  N  V  N  I  S  D  Q  V  *  Y  G  F  L  *  W  P  R  S  L  T  I  E  R  N  G  S  C  G  Y  L  C  L  I  Y  *  F  I  F  S  F  V  F  H  I  I  V  N  N  I  Y  S  *  I  L  H  D  Q  S  N  *  V  C  L  V  S  F  S </first_frame>
            <second_frame>  S  H  G  E  I  Q  T  A  T  L  G  F  T  I  I  I  I  S  I  I  S  S  I  N  R  G  F  V  C  E  V  L  K  R  N  H  Q  S  *  I  A  K  F  V  S  *  K  N  L :   M  W  S  T  L  R  Y  E  K  S  S  D  :  V  F  C  I  Q  L  C  S  I  E  P  *  A  C  C  G  R  R  M  L  I  W  N  F  L  T  L  H  I :   H  S  V  V  M  W  R  L  K  R  K  L  K  R  R  L  P  Y  S  L  I  E  S  R  S  T  L  T  G  K  I  R :   F  A  Y  P  S  V  K  S  K  T  N  K  P  R  G  S  L  P  K  *  N  V  F  T  G  N  T  G  I  *  I  *  M  W  L  I  I  R  K  V  I  L  A  N  L  I  S  Q  K  *  L  T  Q  E  :  R  V  H  L  R  R  G  V  L  G  E  Q  C  W  N  H  L  F  V  K  L  C  F  R  *  *  N  L  *  M  R  K  R  I  T  F  L  R  F  Q  I  L  S  V  S  L  F  P  M  R  S  L  S  Q   : V  H  Q  I  L  H  L  G  W  M  *  S  G  G  C  Y  R  L  G  I  R  P  C  S  A  D  W  R  Y  P  D  G  G  Q  S  S  L  Y  L  I  L  *  E  V  K  W  L  F  I  Q  C  L  A  M  *  I  F  R  T  K  Y  S  M  G  S  S  S  G  L  G  V  S  Q  L  K  E  M  E  A  V  D  I  F  A  *  S  T  N  L  F  F  P  S  C  F  I  S  *  *  T  T  Y  T  A  E  Y  C  M  I  N  L  I  K  F  V  *  F  L  S   </second_frame>
            <third_frame>   R  T  A  K  F  K  L  Q  L  *  G  L  L  *  L  *  F  Q  L  S  P  R  S  I  A  A  L  F  V  K  Y  *  R  G  I  I  N  H  E  L  R  S  L  S  A  K  R  T   : *  C  G  A  L  *  D  T  R  S  P  P  M :   Y  F  A  Y  N  Y  V  P  *  S  L  R  P  A  A  A  E  G  C  *  F  G  T  F  *  H  Y  I   : Y  T  V  W  *  C  G  G  *  K  E  N  *  R  E  D  Y  P  I  H  *  *  S  R  E  A  P  *  Q  E  K  S   : D  L  P  I  L  L  *  S  Q  K  Q  T  S  L  V  V  H  Y  Q  S  R  T  F  L  L  G  T  L  V  Y  K  F  E  C  G  S  S  S  E  R  S  S  W  Q  I  S  S  L  K  S  S  *  P  R  R :   E  C  I  *  G  E  E  C  S  A  N  S  V  G  I  I  S  S  *  S  Y  V  S  D  N  K  I  C  K  *  E  K  G  S  H  S  C  D  F  K  S  *  V  C  H  F  S  L  *  D  H  Y  L  K  :  F  I  R  F  C  I  W  D  G  C  D  Q  E  D  A  T  D  W  A  S  D  H  A  Q  L  I  G  D  T  L  M  V  A  N  L  P  F  I  S  F  F  K  R  *  N  G  C  S  S  N  V  W  Q  C  E  Y  F  G  P  S  I  V  W  V  P  L  V  A  *  E  S  H  N  *  K  K  W  K  L  W  I  S  L  L  D  L  L  I  Y  F  F  L  R  V  S  Y  H  S  K  Q  H  I  Q  L  N  I  A  *  S  I  *  L  S  L  F  S  F  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37709" stop="37765"/>
                    <exon start="37862" stop="37898"/>
                    <exon start="38383" stop="38468"/>
                    <exon start="39038" stop="39133"/>
                    <exon start="40305" stop="40467"/>
                    <exon start="40578" stop="40740"/>
                    <exon start="43958" stop="44033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STKEESSIMNCEVCQLKELDVEHFEIREVLRCILHTIMFHRALGLLRPKDVDLELFDITYTQCGDVEVEKKIEEKITLFIDRVEKHPNRKNQICLSFCEVKNKQASWFTTKVERFYWEHWYINLNVAHHPKGHPGKSHLSKVVDPGESASEERSARRTVLESSLREVMFQIIKFVNEKKDHIPAISNLECVTFPYEITISSSSDSAFGMDVIRRMLQTGHPTMLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65403" PGL_stop="65621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65403" e_stop="65621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="65403" e_stop="65621" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65403" stop="65621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACTCCGGATTTCAGGGTGGGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTCGATGCCTTGAAGTTCCGGCATGGACTAGATTTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  L  L  R  I  S  G  W  A  N  A  S  S  L  D  W  I  F  L  F  M  S  R  C  L  E  V  P  A  W  T  R  F  L  C  I  L  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  H  Y  S  G  F  Q  G  G  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  D  F  Y  V  F  *  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  P  D  F  R  V  G  *  C  F  *  L  G  L  D  L  P  L  H  V  S  M  P  *  S  S  G  M  D  *  I  F  M  Y  F  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0035P05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="82445" PGL_stop="80624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82445" e_stop="82087"/>
            <exon e_start="82006" e_stop="81238"/>
            <exon e_start="80637" e_stop="80624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.481" e_score="0.999"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="82445" e_stop="82087" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82086" i_stop="82007" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="82006" e_stop="81238" e_length="769"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.481">
            <gDNA_intron_boundary i_start="81237" i_stop="80638" i_length="600"/>
          </intron>
          <exon e_serial="3" e_score="0.643">
            <gDNA_exon_boundary e_start="80637" e_stop="80624" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82445" stop="82087"/>
              <exon start="82006" stop="81487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81969" stop="81238"/>
              <exon start="80637" stop="80624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCATCTTTCAGGACTTCAGTGAATTTGATTTCCAACACAATTTTCTCTAAAGATTTGACTGATCCATTTTCCGATTCCGCTAAGGAATTTAAGGAATTGGTGTGGAACATCATGGTTGAGGTTGGTAAACCGAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGGCGCTTGACTGAATATTTTACTAAGCTTCTTCACCTTATTAGTGGTTTGATCGATGAGCGGATAAAGGAAAGGAAAATGGGAAATCGGGCAAATGTTGATGTGTTGGATGCCCTTCTCAACATTAGCCCTGATGAAATCGACAGGAATCATATCGAGCATCTGTGTCTG : GAAATGTTTGCAGCAGGGACTGATACAATATCAAATACATTAGAGTGGGCAATGGCTGAACTACTGAAGAATCCACATACTTTGGAGGAAGCACAAAAAGAACTTGAACAAATAATTGGCAGAGGCAAACTAATAAATGAAGCTGATGTTCCAAAATTACCTTACTTGAGGTGCATCGTGAAAGAAACCTTTCGTATACACCCACAAGTTCCTTTCTTAATTCAGCGCAAAACAGAGGAAGATGTTGATTTTTGCGGCTATACTATTCCAAAAGACTCGCAGGTTCTTGTGAACGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTGGAATTTAAGCCAGAAAGGTTTTGGGATTCAGAAATAGACTTTAAAGGTCGGGATTTTGAGCTGATTCCATTTGGCGCTGGTAGAAGAATTTGCCCTGGATTGCCTTTGGCTATCAGGATGGTTCCAGTAGCACTAGGTTCATTGCTAAATATATTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAGAGTTTTGGTATTACCTTGGCAAAAACTCAACCTCTGCTAGCTATCCCTATTCCGGTGTAACAGTTGCGATAAACTTAAGAATCCATGTAGTTGCTAAATAAGCAGGCTTTTTGCCATGAAAAATCAAATATTGTTAATTTTATTTGAATTTTCAATGTAGAAGTTGTGTTTGATCATATAATGTCATGAATTAGATCTCATATACGAGATACTATCATCTAAT : TGAGAAACAACAAA</gDNA_template>
            <first_frame> E  H  L  S  G  L  Q  *  I  *  F  P  T  Q  F  S  L  K  I  *  L  I  H  F  P  I  P  L  R  N  L  R  N  W  C  G  T  S  W  L  R  L  V  N  R  I  W  W  T  I  S  P  F  L  R  R  L  I  H  K  V  *  G  G  A  *  L  N  I  L  L  S  F  F  T  L  L  V  V  *  S  M  S  G  *  R  K  G  K  W  E  I  G  Q  M  L  M  C  W  M  P  F  S  T  L  A  L  M  K  S  T  G  I  I  S  S  I  C  V  W :   K  C  L  Q  Q  G  L  I  Q  Y  Q  I  H  *  S  G  Q  W  L  N  Y  *  R  I  H  I  L  W  R  K  H  K  K  N  L  N  K  *  L  A  E  A  N  *  *  M  K  L  M  F  Q  N  Y  L  T  *  G  A  S  *  K  K  P  F  V  Y  T  H  K  F  L  S  *  F  S  A  K  Q  R  K  M  L  I  F  A  A  I  L  F  Q  K  T  R  R  F  L  *  T  Y  G  Q  *  G  A  T  L  V  Y  G  K  T  L  W  N  L  S  Q  K  G  F  G  I  Q  K  *  T  L  K  V  G  I  L  S  *  F  H  L  A  L  V  E  E  F  A  L  D  C  L  W  L  S  G  W  F  Q  *  H  *  V  H  C  *  I  Y  L  I  G  S  Y  M  V  E  L  H  L  K  I  W  T  W  R  R  V  L  V  L  P  W  Q  K  L  N  L  C  *  L  S  L  F  R  C  N  S  C  D  K  L  K  N  P  C  S  C  *  I  S  R  L  F  A  M  K  N  Q  I  L  L  I  L  F  E  F  S  M  *  K  L  C  L  I  I  *  C  H  E  L  D  L  I  Y  E  I  L  S  S  N  :  *  E  T  T   </first_frame>
            <second_frame>  S  I  F  Q  D  F  S  E  F  D  F  Q  H  N  F  L  *  R  F  D  *  S  I  F  R  F  R  *  G  I  *  G  I  G  V  E  H  H  G  *  G  W  *  T  E  F  G  G  L  F  P  L  S  *  E  D  *  S  T  R  Y  K  A  A  L  D  *  I  F  Y  *  A  S  S  P  Y  *  W  F  D  R  *  A  D  K  G  K  E  N  G  K  S  G  K  C  *  C  V  G  C  P  S  Q  H  *  P  *  *  N  R  Q  E  S  Y  R  A  S  V  S   : G  N  V  C  S  R  D  *  Y  N  I  K  Y  I  R  V  G  N  G  *  T  T  E  E  S  T  Y  F  G  G  S  T  K  R  T  *  T  N  N  W  Q  R  Q  T  N  K  *  S  *  C  S  K  I  T  L  L  E  V  H  R  E  R  N  L  S  Y  T  P  T  S  S  F  L  N  S  A  Q  N  R  G  R  C  *  F  L  R  L  Y  Y  S  K  R  L  A  G  S  C  E  R  M  G  N  R  A  R  L  *  S  M  G  R  P  F  G  I  *  A  R  K  V  L  G  F  R  N  R  L  *  R  S  G  F  *  A  D  S  I  W  R  W  *  K  N  L  P  W  I  A  F  G  Y  Q  D  G  S  S  S  T  R  F  I  A  K  Y  I  *  L  E  A  T  W  W  N  C  T  *  R  F  G  H  G  G  E  F  W  Y  Y  L  G  K  N  S  T  S  A  S  Y  P  Y  S  G  V  T  V  A  I  N  L  R  I  H  V  V  A  K  *  A  G  F  L  P  *  K  I  K  Y  C  *  F  Y  L  N  F  Q  C  R  S  C  V  *  S  Y  N  V  M  N  *  I  S  Y  T  R  Y  Y  H  L  I :   E  K  Q  Q  </second_frame>
            <third_frame>   A  S  F  R  T  S  V  N  L  I  S  N  T  I  F  S  K  D  L  T  D  P  F  S  D  S  A  K  E  F  K  E  L  V  W  N  I  M  V  E  V  G  K  P  N  L  V  D  Y  F  P  F  L  K  K  I  D  P  Q  G  I  R  R  R  L  T  E  Y  F  T  K  L  L  H  L  I  S  G  L  I  D  E  R  I  K  E  R  K  M  G  N  R  A  N  V  D  V  L  D  A  L  L  N  I  S  P  D  E  I  D  R  N  H  I  E  H  L  C  L  :  E  M  F  A  A  G  T  D  T  I  S  N  T  L  E  W  A  M  A  E  L  L  K  N  P  H  T  L  E  E  A  Q  K  E  L  E  Q  I  I  G  R  G  K  L  I  N  E  A  D  V  P  K  L  P  Y  L  R  C  I  V  K  E  T  F  R  I  H  P  Q  V  P  F  L  I  Q  R  K  T  E  E  D  V  D  F  C  G  Y  T  I  P  K  D  S  Q  V  L  V  N  V  W  A  I  G  R  D  S  S  L  W  E  D  P  L  E  F  K  P  E  R  F  W  D  S  E  I  D  F  K  G  R  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  I  R  M  V  P  V  A  L  G  S  L  L  N  I  F  N  W  K  L  H  G  G  I  A  P  K  D  L  D  M  E  E  S  F  G  I  T  L  A  K  T  Q  P  L  L  A  I  P  I  P  V  *  Q  L  R  *  T  *  E  S  M  *  L  L  N  K  Q  A  F  C  H  E  K  S  N  I  V  N  F  I  *  I  F  N  V  E  V  V  F  D  H  I  M  S  *  I  R  S  H  I  R  D  T  I  I  *   : L  R  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82443" stop="82087"/>
                    <exon start="82006" stop="81401"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFRTSVNLISNTIFSKDLTDPFSDSAKEFKELVWNIMVEVGKPNLVDYFPFLKKIDPQGIRRRLTEYFTKLLHLISGLIDERIKERKMGNRANVDVLDALLNISPDEIDRNHIEHLCLEMFAAGTDTISNTLEWAMAELLKNPHTLEEAQKELEQIIGRGKLINEADVPKLPYLRCIVKETFRIHPQVPFLIQRKTEEDVDFCGYTIPKDSQVLVNVWAIGRDSSLWEDPLEFKPERFWDSEIDFKGRDFELIPFGAGRRICPGLPLAIRMVPVALGSLLNIFNWKLHGGIAPKDLDMEESFGITLAKTQPLLAIPIPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="85961" PGL_stop="85013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85961" e_stop="85425"/>
            <exon e_start="85039" e_stop="85013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.519"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85961" e_stop="85425" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="85424" i_stop="85040" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="0.519">
            <gDNA_exon_boundary e_start="85039" e_stop="85013" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85961" stop="85432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85950" stop="85425"/>
              <exon start="85039" stop="85013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280538" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85939" stop="85425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGACTCACAAGTTCTTGTGAATGTATGGGCAATAGGGCGCGACTCTAGTCTATGGGAAGACCCTTTAAACTTTAAGCCGGAGAGGTTTTGGGAGTCGGATATAGACTTTAGAGGTCGGGATTTTGAGCTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGACTGCCTTTGGCTATCAGGATGATTCCAATCGCGCTAGGTTCATTGATAAATACGTTTAATTGGAAGCTACATGGTGGAATTGCACCTAAAGATTTGGACATGGAGGAAAAATTTGGTATTACCCTGGCAAAAGCTCAACCTCTGCTTGCCATCCCTGTTCCATTGTAGATCAAGAATTATTACTACAGTATGTAAAAATATTCTAGTGTATAGTGTCTCTAAAGATCATTTGCATGTCTGTCAAGAACTGTCAAATGCTATATAAGCCATTGTTCTATACTTGTGTATCCTTGAAATAAGACCATGTCACCACCAAGGATTATGTAATTCTTTCTTGGTTTTCAGTAATGACAATATTATTTGAATTA : ACTTAAAGTTGGAAAACATAAATATCA</gDNA_template>
            <first_frame> *  R  L  T  S  S  C  E  C  M  G  N  R  A  R  L  *  S  M  G  R  P  F  K  L  *  A  G  E  V  L  G  V  G  Y  R  L  *  R  S  G  F  *  A  N  S  I  W  C  W  *  K  N  L  P  W  T  A  F  G  Y  Q  D  D  S  N  R  A  R  F  I  D  K  Y  V  *  L  E  A  T  W  W  N  C  T  *  R  F  G  H  G  G  K  I  W  Y  Y  P  G  K  S  S  T  S  A  C  H  P  C  S  I  V  D  Q  E  L  L  L  Q  Y  V  K  I  F  *  C  I  V  S  L  K  I  I  C  M  S  V  K  N  C  Q  M  L  Y  K  P  L  F  Y  T  C  V  S  L  K  *  D  H  V  T  T  K  D  Y  V  I  L  S  W  F  S  V  M  T  I  L  F  E  L  :  T  *  S  W  K  T  *  I  S </first_frame>
            <second_frame>  K  D  S  Q  V  L  V  N  V  W  A  I  G  R  D  S  S  L  W  E  D  P  L  N  F  K  P  E  R  F  W  E  S  D  I  D  F  R  G  R  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  I  R  M  I  P  I  A  L  G  S  L  I  N  T  F  N  W  K  L  H  G  G  I  A  P  K  D  L  D  M  E  E  K  F  G  I  T  L  A  K  A  Q  P  L  L  A  I  P  V  P  L  *  I  K  N  Y  Y  Y  S  M  *  K  Y  S  S  V  *  C  L  *  R  S  F  A  C  L  S  R  T  V  K  C  Y  I  S  H  C  S  I  L  V  Y  P  *  N  K  T  M  S  P  P  R  I  M  *  F  F  L  G  F  Q  *  *  Q  Y  Y  L  N  * :   L  K  V  G  K  H  K  Y   </second_frame>
            <third_frame>   K  T  H  K  F  L  *  M  Y  G  Q  *  G  A  T  L  V  Y  G  K  T  L  *  T  L  S  R  R  G  F  G  S  R  I  *  T  L  E  V  G  I  L  S  *  F  H  L  V  L  V  E  E  F  A  L  D  C  L  W  L  S  G  *  F  Q  S  R  *  V  H  *  *  I  R  L  I  G  S  Y  M  V  E  L  H  L  K  I  W  T  W  R  K  N  L  V  L  P  W  Q  K  L  N  L  C  L  P  S  L  F  H  C  R  S  R  I  I  T  T  V  C  K  N  I  L  V  Y  S  V  S  K  D  H  L  H  V  C  Q  E  L  S  N  A  I  *  A  I  V  L  Y  L  C  I  L  E  I  R  P  C  H  H  Q  G  L  C  N  S  F  L  V  F  S  N  D  N  I  I  *  I   : N  L  K  L  E  N  I  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85960" stop="85625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDSQVLVNVWAIGRDSSLWEDPLNFKPERFWESDIDFRGRDFELIPFGAGRRICPGLPLAIRMIPIALGSLINTFNWKLHGGIAPKDLDMEEKFGITLAKAQPLLAIPVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="87701" PGL_stop="86049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87701" e_stop="87237"/>
            <exon e_start="87158" e_stop="86695"/>
            <exon e_start="86230" e_stop="86049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87701" e_stop="87237" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.908">
            <gDNA_intron_boundary i_start="87236" i_stop="87159" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87158" e_stop="86695" e_length="464"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86694" i_stop="86231" i_length="464"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="86230" e_stop="86049" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87701" stop="87242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87700" stop="87237"/>
              <exon start="87158" stop="87090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87680" stop="87237"/>
              <exon start="87158" stop="86864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87460" stop="87237"/>
              <exon start="87158" stop="86695"/>
              <exon start="86230" stop="86158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="86695"/>
              <exon start="86230" stop="86049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87058" stop="86695"/>
              <exon start="86230" stop="86065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTTAGCCTCCAAGAACCAACATATTCCCCACTTCATAAGCCAAGAAATTAAAATGGATTACTTTGACATTTTGCTAGGAGTGTTATTCGTCTGGGTTTTGGTGCGCGGAGTATTGATTTCAGTTAGAAGAAGCAAAAGAGTTGCACCAGGTCCATTCCCTTTGCCTATCATCGGAAATCTTCATTTGCTTGGTCATAAACCCCACATATCACTTACGCAACTCGCAAAAAAATATGGTCCTATTATGAATCTCAAATTAGGACAAATAAACGCAGTGGTCATTTCCTCGTCCGTCTTGGCTAAAGAAGCTATGCAAAAGCAAGATTTAGCCTTTTCAAATCGGTTTGTTATTGACGCTATCCGTGCCTGCAATCATGATGATTTCTCAGTTATATGGTTACCTGTCAACAACTCTCAATGGAGAACGCTTCGCAAGATCATGAACTCTCACATCTTCTCAG : GAAACAAGCTAGATGCTAATGAGCATCTGAGGACAAAAAAGATGCAGGAGTTGATTGATTACTGTCACAAAAGTAGCAAAGTTGGTGAAGCAGTGGATATTGGCAGAGCAGCTTTTAGAACTTCATTAAATTTGTTGTCCAACACCATTTTCTCTAAAGATTTGACTGATCCATTCTCTGATTCTGCTAAAGAATTTAAGGAATTGGTATGGAAGATCATGGTTGAGGCTGGTAAACCTAATTTGGTGGACTATTTCCCCTTTCTTAAGAAGATTGATCCACAAGGTATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGCTAAAGGAAAGAGAATTGGGAAATCGTGAAAATATTGATGTGTTAGATGCCCTTCTCGACATTAGCCCAGATGAAATCGACAGGAATCAAATCGAACATCTGTGTTTG : GACTTGTTTGCAGCAGGGACCGATACGACTTCAAATACATTGGAGTGGGCTATGGCTGAACTACTCAAGAACCCACGTGCTTTGGAGAAAGCACAAAAAGAGCTAGAACAAGTAATTGGCAGAGGCAAACCAATAGATGAAGCTGATGTTGCAAAATTACCTTACTTGAGGTGCATCGTAAA</gDNA_template>
            <first_frame> L  S  *  P  P  R  T  N  I  F  P  T  S  *  A  K  K  L  K  W  I  T  L  T  F  C  *  E  C  Y  S  S  G  F  W  C  A  E  Y  *  F  Q  L  E  E  A  K  E  L  H  Q  V  H  S  L  C  L  S  S  E  I  F  I  C  L  V  I  N  P  T  Y  H  L  R  N  S  Q  K  N  M  V  L  L  *  I  S  N  *  D  K  *  T  Q  W  S  F  P  R  P  S  W  L  K  K  L  C  K  S  K  I  *  P  F  Q  I  G  L  L  L  T  L  S  V  P  A  I  M  M  I  S  Q  L  Y  G  Y  L  S  T  T  L  N  G  E  R  F  A  R  S  *  T  L  T  S  S  Q  :  E  T  S  *  M  L  M  S  I  *  G  Q  K  R  C  R  S  *  L  I  T  V  T  K  V  A  K  L  V  K  Q  W  I  L  A  E  Q  L  L  E  L  H  *  I  C  C  P  T  P  F  S  L  K  I  *  L  I  H  S  L  I  L  L  K  N  L  R  N  W  Y  G  R  S  W  L  R  L  V  N  L  I  W  W  T  I  S  P  F  L  R  R  L  I  H  K  V  *  G  D  A  P  L  I  I  L  L  R  F  F  T  V  *  V  I  *  S  M  S  G  *  R  K  E  N  W  E  I  V  K  I  L  M  C  *  M  P  F  S  T  L  A  Q  M  K  S  T  G  I  K  S  N  I  C  V  W :   T  C  L  Q  Q  G  P  I  R  L  Q  I  H  W  S  G  L  W  L  N  Y  S  R  T  H  V  L  W  R  K  H  K  K  S  *  N  K  *  L  A  E  A  N  Q  *  M  K  L  M  L  Q  N  Y  L  T  *  G  A  S  *  </first_frame>
            <second_frame>  F  L  S  L  Q  E  P  T  Y  S  P  L  H  K  P  R  N  *  N  G  L  L  *  H  F  A  R  S  V  I  R  L  G  F  G  A  R  S  I  D  F  S  *  K  K  Q  K  S  C  T  R  S  I  P  F  A  Y  H  R  K  S  S  F  A  W  S  *  T  P  H  I  T  Y  A  T  R  K  K  I  W  S  Y  Y  E  S  Q  I  R  T  N  K  R  S  G  H  F  L  V  R  L  G  *  R  S  Y  A  K  A  R  F  S  L  F  K  S  V  C  Y  *  R  Y  P  C  L  Q  S  *  *  F  L  S  Y  M  V  T  C  Q  Q  L  S  M  E  N  A  S  Q  D  H  E  L  S  H  L  L  R :   K  Q  A  R  C  *  *  A  S  E  D  K  K  D  A  G  V  D  *  L  L  S  Q  K  *  Q  S  W  *  S  S  G  Y  W  Q  S  S  F  *  N  F  I  K  F  V  V  Q  H  H  F  L  *  R  F  D  *  S  I  L  *  F  C  *  R  I  *  G  I  G  M  E  D  H  G  *  G  W  *  T  *  F  G  G  L  F  P  L  S  *  E  D  *  S  T  R  Y  K  A  T  L  H  *  L  F  Y  *  D  S  S  P  Y  E  *  F  D  R  *  A  A  K  G  K  R  I  G  K  S  *  K  Y  *  C  V  R  C  P  S  R  H  *  P  R  *  N  R  Q  E  S  N  R  T  S  V  F   : G  L  V  C  S  R  D  R  Y  D  F  K  Y  I  G  V  G  Y  G  *  T  T  Q  E  P  T  C  F  G  E  S  T  K  R  A  R  T  S  N  W  Q  R  Q  T  N  R  *  S  *  C  C  K  I  T  L  L  E  V  H  R  K </second_frame>
            <third_frame>   F  L  A  S  K  N  Q  H  I  P  H  F  I  S  Q  E  I  K  M  D  Y  F  D  I  L  L  G  V  L  F  V  W  V  L  V  R  G  V  L  I  S  V  R  R  S  K  R  V  A  P  G  P  F  P  L  P  I  I  G  N  L  H  L  L  G  H  K  P  H  I  S  L  T  Q  L  A  K  K  Y  G  P  I  M  N  L  K  L  G  Q  I  N  A  V  V  I  S  S  S  V  L  A  K  E  A  M  Q  K  Q  D  L  A  F  S  N  R  F  V  I  D  A  I  R  A  C  N  H  D  D  F  S  V  I  W  L  P  V  N  N  S  Q  W  R  T  L  R  K  I  M  N  S  H  I  F  S   : G  N  K  L  D  A  N  E  H  L  R  T  K  K  M  Q  E  L  I  D  Y  C  H  K  S  S  K  V  G  E  A  V  D  I  G  R  A  A  F  R  T  S  L  N  L  L  S  N  T  I  F  S  K  D  L  T  D  P  F  S  D  S  A  K  E  F  K  E  L  V  W  K  I  M  V  E  A  G  K  P  N  L  V  D  Y  F  P  F  L  K  K  I  D  P  Q  G  I  R  R  R  S  T  N  Y  F  T  E  I  L  H  R  M  S  D  L  I  D  E  R  L  K  E  R  E  L  G  N  R  E  N  I  D  V  L  D  A  L  L  D  I  S  P  D  E  I  D  R  N  Q  I  E  H  L  C  L  :  D  L  F  A  A  G  T  D  T  T  S  N  T  L  E  W  A  M  A  E  L  L  K  N  P  R  A  L  E  K  A  Q  K  E  L  E  Q  V  I  G  R  G  K  P  I  D  E  A  D  V  A  K  L  P  Y  L  R  C  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87699" stop="87237"/>
                    <exon start="87158" stop="86695"/>
                    <exon start="86230" stop="86051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLASKNQHIPHFISQEIKMDYFDILLGVLFVWVLVRGVLISVRRSKRVAPGPFPLPIIGNLHLLGHKPHISLTQLAKKYGPIMNLKLGQINAVVISSSVLAKEAMQKQDLAFSNRFVIDAIRACNHDDFSVIWLPVNNSQWRTLRKIMNSHIFSGNKLDANEHLRTKKMQELIDYCHKSSKVGEAVDIGRAAFRTSLNLLSNTIFSKDLTDPFSDSAKEFKELVWKIMVEAGKPNLVDYFPFLKKIDPQGIRRRSTNYFTEILHRMSDLIDERLKERELGNRENIDVLDALLDISPDEIDRNQIEHLCLDLFAAGTDTTSNTLEWAMAELLKNPRALEKAQKELEQVIGRGKPIDEADVAKLPYLRCIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="92854" PGL_stop="92047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92854" e_stop="92047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="92854" e_stop="92047" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92854" stop="92047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGAGTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGAAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  V  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  K  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  E  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  *  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  S  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  E  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92852" stop="92049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKSLGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYEGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93513" PGL_stop="92865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93513" e_stop="92865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="93513" e_stop="92865" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93513" stop="92865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93512" stop="93128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACATCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGTCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGATTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTACAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTTCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCATATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  I  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  V  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  D  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  T  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  F  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  I  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  S  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  I  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  S  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  Y  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   H  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  Y  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  F  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0035P05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93512" stop="92865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMSSDIHQSIAQDRPRRIGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVSRGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAYQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 309 chains have been computed
$ 
$ memory statistics:
$ 219656 bytes spliced alignments in total
$ 43 spliced alignments have been stored
$ 5108 bytes was the average size of a spliced alignment
$ 19568 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 395 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:30:25
-->
