<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:23:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417130" ref_strand="+" ref_description="SGN-E417130 [STM-24-D12]">
      <seq>gacaaatggagctgcaaacgaaggtcgcgcaagctgttcacgtgctaaatcacgatagccgatcgtgcaaccgtgttgctgctaatcaatggctagtacagtttcaacagacagatgctgcttgggaagtcgccacgtccatcctgacatccaattatcaccagcaatttgtttgtgactttgaagtcgaattttttgccgctcagattctcaagcgaaagatacaaaatgaaggaagctacttgcaaatgggagcaaaagatgctctgctaaatgctcttctattggctgctaagagatttagtttaggccctccacagctgttgactcaaatttgtcttgctctctctgcactcatgcttcatgctgtagagcatggaaaaccaattgagaagctcttttgcagtctccaaagtttggaaaaccatgatgaaggcaacatcgctgtcttggaaatgctcacagtccttccagaagtcgtggaggatcagaatactgaatacagaattagttcggctcagcgacgcgacttctctcacatacttcagtggttcttgagttccttcatcgtcagagtgatatgagttttaacagtagcattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="2010" stop="4871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2309" g_stop="2529" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2530" i_stop="3955" i_length="1426">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3956" g_stop="4054" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="320" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4055" i_stop="4140" i_length="86">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4141" g_stop="4349" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="529" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4350" i_stop="4496" i_length="147">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4571" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="604" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E417130" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2309" e_stop="2529"/>
          <exon e_start="3956" e_stop="4054"/>
          <exon e_start="4141" e_stop="4349"/>
          <exon e_start="4497" e_stop="4571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGAGCTGCAAACGAAGGTCGCGCAAGCTGTTCACGTGCTAAATCACGATAGCCAATCGTGCAACCGTGTTGCTGCTAATCAATGGTTAGTACAGTTTCAACAGACAGATGTTGCTTGGGAAGTAGCCACGTCCATCCTGACATCCAATTATCACCAGCAATTTGCTTGTGACTTTGAAGTCGAATTTTTTGCCGCTCAGATTCTCAAGCGAAAGGTCAGAGCCCAATAAATCATCTTTCACCCCGTTCACTTTTTTTTTTCATATGAAAGGTCCCAACCCTTCTCTTCAGTTACATGTTTGGGGCTCGTCAAATCCTCAGCCTGATGGGGTAAAGAAACATCTAAAAGGGGGCACAACTAATTGTTTAAAATGCTGTAATAGGGTGGCTACCCAGCACACTCGATAGTAATCACTGGTCCTTAAATTTGATGACAGCAAAGAGGAATGTAATGGTACTGAACTGATTGCATCATCATTTTGGATAAATTGGGACGGACTGAGTTACCAATTTTTCCTTGTTTTTCTTCCTTTTATTTGTGGAGAGAAAATGAGTTCACAATTATCTCAAACTTGCAGATTATTGGTGTCTCTCATAGTGTTATTGGATGCGTTTTGATTATTGTCTTTGAATTCTATGCGAACTATACTGAAAGACTTGGGTTTATCCATCATTTTTCCGTACATTGTGAGGTCATGATGTGAGACTATATTAGTTTATTGAGATTATTCCATGATTTACAGTACTTAGGTTTGATTTAGTTTTATTCAATTAATATATTTTACCGATCAGATCTAAAATTGCCTAGAGTCAGTAGTTTACCAAAGTTATACCACTTGCAATAAATATTTCCAACCAAGCTTAAGAGAATAATCAAGCTTATGATTATTCACCTATTCTCTTCAAGTACTCAGTATTTGTAGACTCTGGCATCCTTCACCTAAGTTTCAATTTTTTTGATGAATTTATGAGAAGTTTTGCAGCTAAGCTGCTTCTACCAATCCATCGGAAAATAACCCCTGTTGATATCCATTTTGATTTCTCCTAGTACTATCAATGTAAAATTACAGGTAGTAATCATTATATATCACTGATCCGCTTCAGGTGAACTATGGTTTGACGCCCAGGGTTCTCTTAGTTAAGAATGTAAGTTATTGCTGAGAGGTTAGTCAAAGAATAATTGATGCTCAATATTCTTAAGGAAGTAAACTGTATGTAATTTTTGACATAATCTTTGTGCTTCATTTATACAACCTTCCCATTCTTTTTTTAATAAGGTAATAATTTCAGTAAAAAGTGGAAAAATCCGTATACAAGAGGTATCTGATGGGTACACCAAAAGTAAACTAGAAACAACAAACTAGTTTGCAACTTTACAAAATCTATTTCAACCCTTTCAAATGCTCTCCTATTTCTCTGTTCCCAAATAATCCACATAATTGCTGAACTGGCAACATTCCATGCCCTTGGACTGCTCTTCCCGCTCCTATAAGTTCATTATGCAGCGCCTCAGCACCTGATTATACTTCCATTAAATTGTATTGTGCTGTATTTAGGGAAGGAGAAATCATATCTCTTATTTCTACTTTTTGAGGTTGCTTATATCTTATTGATAGTGTGAGGTTATTGTCTAATTTGCAGATACAAAATGAAGGAAGCTACTTGCAAATGGGAGCAAAAGATGCTCTGCTAAATGCTCTTCTGTTGGCTGCTAAGAGATTTAGTTTAGGCCCTCCACTGGTGATTCAACATTCTGCTTGCAAATTTTTTTATGATTGTTAAAAATGTTATTTATATTTGCTGAGATCTTATTTTGTTGGAAACAGCTGTTGACTCAAATTTGTCTTGCTCTCTCTGCACTCATGCTTCATGCTGTAGAGCATGGAAAACCAATTGAGAAGCTCTTTTGCAGTCTCCAAAGTTTGGAAAACCATGATGAAGGCAACATCGCTGTCTTGGAAATGCTCACAGTCCTTCCAGAAGTTGTGGAGGATGAGAATACTGAGTACAGAGCTAGTTCGGCTCAGCGACGCGAGTATGGTCGAGAGGTTTAGAACTCCTTTTTGATTGTTTTAAAAGCTGCAGTTTTTTTTTTCTTTTGGATAAGTTGATGCTTTATAATGCATGGCTTCCCTTTATCCAGCTTCTATATCTTACATGTATATTTTCCTGCAAGGAACAGCTTCTCTCACATACTTCAGTGGTTCTTGAGTTCCTTCATCGTCAGAGTGATATGAGTTTTAACAGTAGCATTCAA</genome_strand>
        <mrna_strand>GACAAATGGAGCTGCAAACGAAGGTCGCGCAAGCTGTTCACGTGCTAAATCACGATAGCCGATCGTGCAACCGTGTTGCTGCTAATCAATGGCTAGTACAGTTTCAACAGACAGATGCTGCTTGGGAAGTCGCCACGTCCATCCTGACATCCAATTATCACCAGCAATTTGTTTGTGACTTTGAAGTCGAATTTTTTGCCGCTCAGATTCTCAAGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAAATGAAGGAAGCTACTTGCAAATGGGAGCAAAAGATGCTCTGCTAAATGCTCTTCTATTGGCTGCTAAGAGATTTAGTTTAGGCCCTCCACAG......................................................................................CTGTTGACTCAAATTTGTCTTGCTCTCTCTGCACTCATGCTTCATGCTGTAGAGCATGGAAAACCAATTGAGAAGCTCTTTTGCAGTCTCCAAAGTTTGGAAAACCATGATGAAGGCAACATCGCTGTCTTGGAAATGCTCACAGTCCTTCCAGAAGTCGTGGAGGATCAGAATACTGAATACAGAATTAGTTCGGCTCAGCGACGCGA...................................................................................................................................................CTTCTCTCACATACTTCAGTGGTTCTTGAGTTCCTTCATCGTCAGAGTGATATGAGTTTTAACAGTAGCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440540" ref_strand="+" ref_description="SGN-E440540 [cSTA-17-I4]">
      <seq>gacaaatggagctgcaaacgaaggtcgcgcaagctgttcacgtgctgaatcacgatagccgatcgtgcaaccgtgttgctgctaatcaatggctagtacagtttcaacagacagatgctgcttgggaagtcgccacgtccatcctgacatccaattatcaccagcaatttgtttgtgactttgaagtcgaattttttgccgctcagattctcaagcgaaagatacaaaatgaaggaagctacttgcaaatgggagcaaaagatgctctgctaaatgctcttctattggctgctaagagatttagtttaggccctccacagctgttgactcaaatttgtcttgctctctctgcactcatgcttcatgctgtagagcatggaaaaccaattgagaagctcttttgcagtctccaaagtttggaaaaccatgatgaaggcaacatcgctgtcttggaaatgctcacagtccttccagaagtcgtggaggatcagaatactgaatacagaattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="2010" stop="4634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2309" g_stop="2529" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2530" i_stop="3955" i_length="1426">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3956" g_stop="4054" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="320" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4055" i_stop="4140" i_length="86">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4141" g_stop="4334" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="514" r_length="194" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E440540" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2309" e_stop="2529"/>
          <exon e_start="3956" e_stop="4054"/>
          <exon e_start="4141" e_stop="4334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGAGCTGCAAACGAAGGTCGCGCAAGCTGTTCACGTGCTAAATCACGATAGCCAATCGTGCAACCGTGTTGCTGCTAATCAATGGTTAGTACAGTTTCAACAGACAGATGTTGCTTGGGAAGTAGCCACGTCCATCCTGACATCCAATTATCACCAGCAATTTGCTTGTGACTTTGAAGTCGAATTTTTTGCCGCTCAGATTCTCAAGCGAAAGGTCAGAGCCCAATAAATCATCTTTCACCCCGTTCACTTTTTTTTTTCATATGAAAGGTCCCAACCCTTCTCTTCAGTTACATGTTTGGGGCTCGTCAAATCCTCAGCCTGATGGGGTAAAGAAACATCTAAAAGGGGGCACAACTAATTGTTTAAAATGCTGTAATAGGGTGGCTACCCAGCACACTCGATAGTAATCACTGGTCCTTAAATTTGATGACAGCAAAGAGGAATGTAATGGTACTGAACTGATTGCATCATCATTTTGGATAAATTGGGACGGACTGAGTTACCAATTTTTCCTTGTTTTTCTTCCTTTTATTTGTGGAGAGAAAATGAGTTCACAATTATCTCAAACTTGCAGATTATTGGTGTCTCTCATAGTGTTATTGGATGCGTTTTGATTATTGTCTTTGAATTCTATGCGAACTATACTGAAAGACTTGGGTTTATCCATCATTTTTCCGTACATTGTGAGGTCATGATGTGAGACTATATTAGTTTATTGAGATTATTCCATGATTTACAGTACTTAGGTTTGATTTAGTTTTATTCAATTAATATATTTTACCGATCAGATCTAAAATTGCCTAGAGTCAGTAGTTTACCAAAGTTATACCACTTGCAATAAATATTTCCAACCAAGCTTAAGAGAATAATCAAGCTTATGATTATTCACCTATTCTCTTCAAGTACTCAGTATTTGTAGACTCTGGCATCCTTCACCTAAGTTTCAATTTTTTTGATGAATTTATGAGAAGTTTTGCAGCTAAGCTGCTTCTACCAATCCATCGGAAAATAACCCCTGTTGATATCCATTTTGATTTCTCCTAGTACTATCAATGTAAAATTACAGGTAGTAATCATTATATATCACTGATCCGCTTCAGGTGAACTATGGTTTGACGCCCAGGGTTCTCTTAGTTAAGAATGTAAGTTATTGCTGAGAGGTTAGTCAAAGAATAATTGATGCTCAATATTCTTAAGGAAGTAAACTGTATGTAATTTTTGACATAATCTTTGTGCTTCATTTATACAACCTTCCCATTCTTTTTTTAATAAGGTAATAATTTCAGTAAAAAGTGGAAAAATCCGTATACAAGAGGTATCTGATGGGTACACCAAAAGTAAACTAGAAACAACAAACTAGTTTGCAACTTTACAAAATCTATTTCAACCCTTTCAAATGCTCTCCTATTTCTCTGTTCCCAAATAATCCACATAATTGCTGAACTGGCAACATTCCATGCCCTTGGACTGCTCTTCCCGCTCCTATAAGTTCATTATGCAGCGCCTCAGCACCTGATTATACTTCCATTAAATTGTATTGTGCTGTATTTAGGGAAGGAGAAATCATATCTCTTATTTCTACTTTTTGAGGTTGCTTATATCTTATTGATAGTGTGAGGTTATTGTCTAATTTGCAGATACAAAATGAAGGAAGCTACTTGCAAATGGGAGCAAAAGATGCTCTGCTAAATGCTCTTCTGTTGGCTGCTAAGAGATTTAGTTTAGGCCCTCCACTGGTGATTCAACATTCTGCTTGCAAATTTTTTTATGATTGTTAAAAATGTTATTTATATTTGCTGAGATCTTATTTTGTTGGAAACAGCTGTTGACTCAAATTTGTCTTGCTCTCTCTGCACTCATGCTTCATGCTGTAGAGCATGGAAAACCAATTGAGAAGCTCTTTTGCAGTCTCCAAAGTTTGGAAAACCATGATGAAGGCAACATCGCTGTCTTGGAAATGCTCACAGTCCTTCCAGAAGTTGTGGAGGATGAGAATACTGAGTACAGAGCTAGTTC</genome_strand>
        <mrna_strand>GACAAATGGAGCTGCAAACGAAGGTCGCGCAAGCTGTTCACGTGCTGAATCACGATAGCCGATCGTGCAACCGTGTTGCTGCTAATCAATGGCTAGTACAGTTTCAACAGACAGATGCTGCTTGGGAAGTCGCCACGTCCATCCTGACATCCAATTATCACCAGCAATTTGTTTGTGACTTTGAAGTCGAATTTTTTGCCGCTCAGATTCTCAAGCGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAAATGAAGGAAGCTACTTGCAAATGGGAGCAAAAGATGCTCTGCTAAATGCTCTTCTATTGGCTGCTAAGAGATTTAGTTTAGGCCCTCCACAG......................................................................................CTGTTGACTCAAATTTGTCTTGCTCTCTCTGCACTCATGCTTCATGCTGTAGAGCATGGAAAACCAATTGAGAAGCTCTTTTGCAGTCTCCAAAGTTTGGAAAACCATGATGAAGGCAACATCGCTGTCTTGGAAATGCTCACAGTCCTTCCAGAAGTCGTGGAGGATCAGAATACTGAATACAGAATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412861" ref_strand="-" ref_description="SGN-E412861 [STM-16-N20]">
      <seq>cccagcttgtatatggtggacagtgtgaaagaaaggaatcaaagatgttttgagggcaagaagaacaatgtgcagaatttcaagatgaattgtatagctctttattatttttggtgtaaacagaaagtcttagtacaggcagaagaactttttgatgttttagactatttgtgacaaaaagcacagatggagtcggtctagtttgtaatacttttggaagaggggctactttgatgtagtatacctgtggataaatagaagaaaaagttaccataataaaaaaaaaatatatcattaaaaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="15019" stop="14161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14719" g_stop="14430" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E412861" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14719" e_stop="14430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCTAGTATATGGTGGACAGTGTGGAAAGAAAGGAATCAAATATGTTTTAAGGGCAAGAAGAACAATTTGCAGAATTTCAAGATGAATTGTACAGCTCTTTATTATTTTTGGTGTAAACAGAAAGTTTTAGTACAGGCAGAAGAACTTTTTGACGTTATAGACTATTTGTGACAAAAAGCACAGATGGAGTCAGTCTAGTTTATAATACTTTTGGAAGGGAGGCTACTTTGATGTAGTATACCTGTGGACAAATAGGGAAAAAAAAGTTATCACTCTCAAAAAAAAA</genome_strand>
        <mrna_strand>CCCAGCTTGTATATGGTGGACAGTGT-GAAAGAAAGGAATCAAAGATGTTTTGAGGGCAAGAAGAACAATGTGCAGAATTTCAAGATGAATTGTATAGCTCTTTATTATTTTTGGTGTAAACAGAAAGTCTTAGTACAGGCAGAAGAACTTTTTGATGTTTTAGACTATTTGTGACAAAAAGCACAGATGGAGTCGGTCTAGTTTGTAATACTTTTGGAAGAGGGGCTACTTTGATGTAGTATACCTGTGGATAAATA--GAAGAAAAAGTTACCATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217752" ref_strand="+" ref_description="SGN-E217752 [cLEL-25-O9](-)">
      <seq>gaaaaaatattgcagtattatcaaaggcaaattaattttattaataattggagacatacattcatagatataatttctaacctaaaaatagaaaaatatgcttctcacttatcagcaaaatttaaataacaaataaaagaacctaactccctaaattcaactcacacaggactccaataaaataatttaaaaatcctaaaatagctaattgatatatttttgcaatatcctgagacatattctcttgatttgggccacagtgagattatttggcagcggattgatttcataatcctcttccacggcttcccaaagattaagaacctctaagtaagtttccattctcacatcccatagttgataattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcaaagaaaaaatactgccgtattatcaaagggaattattttattaataattcagagacatacctgtctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="17867" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18167" g_stop="18677" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E217752" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18167" e_stop="18677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATATTGCAGTATTATCAAAGG-GAATT-ATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAA-CTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAA-CTAACT-CCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAA</genome_strand>
        <mrna_strand>GAAAAAATATTGCAGTATTATCAAAGGCAAATTAATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACCTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACCTAACTCCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217617" ref_strand="+" ref_description="SGN-E217617 [cLEL-25-O21](-)">
      <seq>tattgcagtattatcaaagggaattattttattaataattggagacatacattcatagatataatttctaactaaaaatagaaaaatatgcttctcacttatcagcaaaatttaaataacaaataaaagaactaactcctaaattcaactcacacaggactccaataaaataatttaaaaatcctaaaatagctaattgatatatttttgcaatatcctgagacatattctcttgatttgggccacagtgagattatttggcagcggattgatttcataatcctcttccacggcttcccaaagattaagaacctctaagtaagtttccattctcacatcccatagttgataattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcaaagaaaaaatactgccgtattatcaaagggaattattttattaataatctcagagacatacctgtctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="17874" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18174" g_stop="18677" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E217617" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18174" e_stop="18677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCAGTATTATCAAAGGGAATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAAT-TCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAA</genome_strand>
        <mrna_strand>TATTGCAGTATTATCAAAGGGAATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATCTCAGAGACATACCTGTCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222096" ref_strand="+" ref_description="SGN-E222096 [cLEL-36-A4](-)">
      <seq>gcagtattatcaaagggaattattttattaataattgaagacatacattcatagatataatttctaactaaaaatagaaaaatatgcttctcacttatcagcaaaatttaaataacaaataaaagaactaactcctaaattcaactcacacaggactccaataaaataatttaaaaatcctaaaatagctaattgatatatttttgcaatatcctgagacatattctcttgatttgggccacagtgagattatttggcagcggattgatttcataatcctcttccacggcttcccaaagattaagaacctctaagtaagtttccattctcacatcccatagttgataattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcaaagaaaaaatactgccgtattatcaaagggaattattttattaataattcagagacatacctgtctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="17878" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18178" g_stop="18677" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E222096" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18178" e_stop="18677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATTATCAAAGGGAATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAA</genome_strand>
        <mrna_strand>GCAGTATTATCAAAGGGAATTATTTTATTAATAATTGAAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222909" ref_strand="+" ref_description="SGN-E222909 [cLEL-38-M20](-)">
      <seq>aattattttattaataattggagacatacattcatagatataatttctaactaaaaatagaaaaatatgcttctcacttatcagcaaaatttaaatatcaaataaaagaactaactcctaaattcagctcacacaggactccaataaaataatttaaaaatcctaaaatagctaattgatatatttttgcaatatcctgagacatattctcttgatttgggccacagtgagattatttggcagcggattgatttcataatcctcttccacggcttcccaaagattaagaacctctaagtaagtttccattctcacatcccatagttgataattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcaaagaaaaaatactgccgtattatcaaagggaattattttattaataattcagagacatacctgtctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="17895" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18195" g_stop="18677" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E222909" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18195" e_stop="18677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAA</genome_strand>
        <mrna_strand>AATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATATCAAATAAAAGAACTAACTCCTAAATTCAGCTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227835" ref_strand="+" ref_description="SGN-E227835 [cLEL-39-L17](-)">
      <seq>agttgccattctcacatcccatagttgattattctcaccatcaataataggaggatccattagcgaaaaactattttcgaaatctatttttctactcaaacaaataatactgccgtattatcaaaggggattattttattaataattcagggacatacctgtctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="18195" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18495" g_stop="18678" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E227835" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18495" e_stop="18678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>AGTTGCCATTCTCACATCCCATAGTTGATTATTCTCACCATCAATAATAGGAGGATCCATTAGCGAAAAACTATTTTCGAAATCTATTTTTCTACTCAAACAAATAATACTGCCGTATTATCAAAGGGGATTATTTTATTAATAATTCAGGGACATACCTGTCTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227860" ref_strand="+" ref_description="SGN-E227860 [cLEL-39-O3](-)">
      <seq>ttctcacatcccatagttgataattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcaaaggaaaaatactgccgtattatcaaagggaattattttattaataattcagagacatacctgcctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="18203" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18503" g_stop="18678" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E227860" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18503" e_stop="18678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>TTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGGAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGCCTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227744" ref_strand="+" ref_description="SGN-E227744 [cLEL-39-B24](-)">
      <seq>agttggtaattctcaccatcaaaaataggaggaaccattagcgaaaaactattttcggaatctatttttctactcgaagaaaaaatgctgccgtattatcaaagggaattattttattaataattcagagacatacctgtctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="18217" stop="18978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18517" g_stop="18678" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E227744" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18517" e_stop="18678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAAA</genome_strand>
        <mrna_strand>AGTTGGTAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCGAAGAAAAAATGCTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357061" ref_strand="+" ref_description="SGN-E357061 [cTOS-22-O2]">
      <seq>aatgcagaatcattcttctcaaggagtctcaacttcttagagaatttgtgcattttttgtaccaatgtacattgtacagtatccccaattttgtaatatagaaatcagtcttgaaatacacaacatatcaacgaggcactgatggcccatttatgccaattggttagtagggcaaaagaatcatcaaaagagaaataaaacggaggatattgattattctaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="67632" stop="68457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67932" g_stop="68162" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E357061" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67932" e_stop="68162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAGAATCATTCTTCTCAAGGAGTCTCAACTTCTTAGAGAATTTGTGCATTTTTTGTACCAATGTACATTGTACAGTATCCCCAATTTTGTAATATAGAAATCAGTCTTGAAATACACAACATATCAACGAGGCACTGATGGCCCATTTATGCCAATTGGTTAGTAGGGCAAAAGAATCATCAAAAGAGAAATAAAACGGAGGATATTGATTATTCTAACAAATCTTA</genome_strand>
        <mrna_strand>AATGCAGAATCATTCTTCTCAAGGAGTCTCAACTTCTTAGAGAATTTGTGCATTTTTTGTACCAATGTACATTGTACAGTATCCCCAATTTTGTAATATAGAAATCAGTCTTGAAATACACAACATATCAACGAGGCACTGATGGCCCATTTATGCCAATTGGTTAGTAGGGCAAAAGAATCATCAAAAGAGAAATAAAACGGAGGATATTGATTATTCTAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="68440" stop="69664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68704" g_stop="69374" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68704" e_stop="69374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCCCCATACCCATACACCAATGGTTATGGTTATCTTCTTCACCCACCATTCTAATAATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCTCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAA-TTGTCGGGTTAAAGATGGAACTGTACAGGGAAAGGAAGGAAGGGTCGCCATTAATGGAGTTAGAGGAAATGTGTGTTTTGTTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAAGTTTTACTCTTTTTTT--TTTTTTTTTACTTTAAAATAATTTTTTATTTTTTTTCTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAAAGCATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTAATTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATAAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTATAATTAAATAT</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACC-A--G-T--GGTTATCTTCTTC-CCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG--AGG--GG--GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTG-TTCCAGTTGAAGGCAGGG-A---GGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCTATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361117" ref_strand="+" ref_description="SGN-E361117 [cLPP-13-B5]">
      <seq>ccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataagtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtggccgcatatgactttggcctattttattctaccgttggttacgaatatttattagtatatataggaatccaccattaanggaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="68440" stop="76030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68705" g_stop="69365" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E361117" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68705" e_stop="69365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCAACCCCCATACCCATACACCAATGGTTATGGTTATCTTCTTCACCCACCATTCTAATAATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCTCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAA-TTGTCGGGTTAAAGATGGAACTGTACAGGGAAAGGAAGGAAGGGTCGCCATTAATGGAGTTAGAGGAAATGTGTGTTTTGTTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAAGTTTTACTCTTTTTTT--TTTTTTTTTACTTTAAAATAATTTTTTATTTTTTTTCTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAAAGCATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTAATTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATAAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTATA</genome_strand>
        <mrna_strand>CCACCCCAACCCCTATCCCCATACACC-A--G---TGGTTATCTTCTTC-CCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG--AGG--GG--GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTG-TTCCAGTTGAAGGCAGGG-A---GGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAAGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541883" ref_strand="+" ref_description="SGN-E541883 [TUS-62-O13](-)">
      <seq>atgcactaaggttgcataatcttcatttgaaagaaaggggaaaaaataatgtgtaagacatgtttttccatatttaagtggctgtgtaatgatgtgtcttgttcaggctgaactgctcttggagctacctaaagaacagttgctgaattggatcttccaatgcctcgcagaattatattcttcattgccgaccttgataaaatattagtcctttcaatgaactgtgattcttacatcatctagtaggcagccccacggtccattgcccatcgctataatagggtactggggagtgctttaattaagagcgttagaagcttgtctctcatcagcagctgtccccacatgtacagtatgaaaacttgagatagatctgtatcatatattcaagctgattgtgttaaccaactggcactttccattcctcgcgggcagtcaatctatatcagaagtaaaagccacgatgagtgcattgccttctgagatgaggattaacagagttgtttacatataggatataggatatattgatggacaaaaaaaagttaggatcctgaataggggaagagcacagatcatattttgtctttcatgttccctggacccattggctcctttctctttatgttattagatagatgtactcttcgtgacattttctttcttctgaattatgacgcttcaaggaatttgtgttacatatttatttattcaaaaaaactagtaaaattaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="78591" stop="68770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78291" g_stop="77803" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77802" i_stop="77685" i_length="118">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77684" g_stop="77443" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="731" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77442" i_stop="76556" i_length="887">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76555" g_stop="76519" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="767" r_length="36" r_score="0.514"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E541883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78291" e_stop="77803"/>
          <exon e_start="77684" e_stop="77443"/>
          <exon e_start="76555" e_stop="76519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTAAGGTTGCATAATCTTCATTTGAAAGAAAGGGGAAAAAATAATGTGTAAGACATGTTTTTCCATATTTAAGTGGCTGTGTAATGATGTGTCTTGTTCAGGCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAGGTACTTAACTTTTGAATTCAATGAGGTTTATCTTTGGTCTGTTCTCTTTTTATCTTTTCATTTTCTATTTTTACATTGTCTCCTAATCGTCAGACCTGGTTTGCTTTTCACTGTGCAGGATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATTATCCGCGTGAAGCGCTAGAATTTAATATCATAAAATTTATAAATAATACTTAAAATTTGTCAGTCATTAATAATGTAAAGGATAATGATAATTATTACTACATCTTATCATTTATCCATAATAACATAAGCATAAATTAATGACCGTCAGTGAGCCACTCAATAAGAGGCAGAGAACACAAATATTTAATTGTGAAGAAGAAGAAGGGTTCAAAATTTTCGTTGTTTTAAAATGTGAGGAAATCCCTTTATTTATAGACAACAAATGGTAGTGCGAACAAATGTTTATTATATCTTATCGGAAAGGTTACAACTATTTGAAAAAGTTGCAATCCTTCAAATTAGACACAACTTTTTATAAAAGTCGCAACTTTTTATAAAATTACAATTTTTCACATAAGTCATAACTTTTCATGAAAGGAGAAGGATAATTTTGTAAATAAATAAATTAAAAGAGAATTCTGGTTTGTGGTGGAGCCACGTAGACGGATCTAAGGTTCTCTTATATATATATACTAGCAGGGGCGAAGCTACAGTGTTAAATGAGGGTTCGGACGAACTTACTAGCTTTTACAGACTCTATAAACGTATTGAAAAATCATGTACAAATATCTTTAAAATTTGCGTGCGAGTCCATATCATATTGAGGTGGATGGCGCAGTGGTAAGTACGCAATTATGTATAATTTGGATGGGGGTACGAGTCTAACTAAGCAATAGTTAATCAATATTTTTTATTTAATTCAACTACAAGATAAAAAATGTAGAAAATTTCAATTTTTTTTAAAAATAACCCAAACAATCAATATAAATAAAATTCATATGATTTGAGTTATTATTTATCGTGAAGAGTTAATGTTCTGATTGATCTTTAATGAAAATATTTTAGAGAAAAAGATAGAAATTCTTAACTTGAAAAAGGAAGA</genome_strand>
        <mrna_strand>ATGCACTAAGGTTGCATAATCTTCATTTGAAAGAAAGGGGAAAAAATAATGTGTAAGACATGTTTTTCCATATTTAAGTGGCTGTGTAATGATGTGTCTTGTTCAGGCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAG......................................................................................................................GATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376932" ref_strand="+" ref_description="SGN-E376932 [TUS-20-C21](-)">
      <seq>attggatcttccaatgcctcgcagaattatattcttcattgccgaccttgataaaatattagtcctttcaatgaactgtgattcttacatcatctagtaggcagccccacggtccattgcccatcgctataatagggtactggggagtgctttaattaagagcgttagaagcttgtctctcatcagcagctgtccccacatgtacagtatgaaaacttgagatagatctgtatcatatattcaagctgattgtgttaaccaactggcactttccattcctcgcgggcagtcaatctatatcagaagtaaaagccacgatgagtgcattgccttctgagatgaggattaacagagttgtttacatataggatataggatatattgatggacaaaaaaaagttaggatcctgaataggggaagagcacagatcatattttgtctttcatgttccctggacccattggctcctttctctttatgttattagatagatgtactcttcgtgacattttctttcttctgaattatgacgcttcaaggaatttgtgttacatatttatttattcaaaaaaactagtaaaattatccgcgtgaagcgctagaatttaatatcataaaatttataaataatacttaaaatttgtcagtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="78445" stop="77070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78145" g_stop="77803" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77802" i_stop="77685" i_length="118">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77684" g_stop="77366" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="662" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E376932" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78145" e_stop="77803"/>
          <exon e_start="77684" e_stop="77366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAGGTACTTAACTTTTGAATTCAATGAGGTTTATCTTTGGTCTGTTCTCTTTTTATCTTTTCATTTTCTATTTTTACATTGTCTCCTAATCGTCAGACCTGGTTTGCTTTTCACTGTGCAGGATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATTATCCGCGTGAAGCGCTAGAATTTAATATCATAAAATTTATAAATAATACTTAAAATTTGTCAGTCATTAATAATGTA</genome_strand>
        <mrna_strand>ATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAG......................................................................................................................GATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATTATCCGCGTGAAGCGCTAGAATTTAATATCATAAAATTTATAAATAATACTTAAAATTTGTCAGTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541890" ref_strand="+" ref_description="SGN-E541890 [TUS-62-O17](-)">
      <seq>agttgctgaattggatcttccaatgcctcgcagaattatattcttcattgccgaccttgataaaatattagtcctttcaatgaactgtgattcttacatcatctagtaggcagccccacggtccattgcccatcgctataatagggtactggggagtgctttaattaagagcgttagaagcttgtctctcatcagcagctgtccccacatgtacagtatgaaaacttgagatagatctgtatcatatattcaagctgattgtgttaaccaactggcactttccattcctcgcgggcagtcaatctatatcagaagtaaaagccacgatgagtgcattgccttctgagatgaggattaacagagttgtttacatataggatataggatatattgatggacaaaaaaaagttaggatcctgaataggggaagagcacagatcatattttgtctttcatgttccctggacccattggctcctttctctttatgttattagatagatgtactcttcgtgacattttctttcttctgaattatgacgcttcaaggaatttgtgttacatatttatttattcaaaaaaactagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="78454" stop="77145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78154" g_stop="77803" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77802" i_stop="77685" i_length="118">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77684" g_stop="77445" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="592" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E541890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78154" e_stop="77803"/>
          <exon e_start="77684" e_stop="77445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAGGTACTTAACTTTTGAATTCAATGAGGTTTATCTTTGGTCTGTTCTCTTTTTATCTTTTCATTTTCTATTTTTACATTGTCTCCTAATCGTCAGACCTGGTTTGCTTTTCACTGTGCAGGATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAA</genome_strand>
        <mrna_strand>AGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAG......................................................................................................................GATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E596234" ref_strand="+" ref_description="SGN-E596234 [39523]">
      <seq>cgaaaatctgaggcgtcagtatggcaaagaaccttactggatggaaatcctattgaaaaagctttatgtcagaagaatggcagcagatttaggaattagcagcatttatgcttcaggaaagatggttggcatgaaaacaaacatgtcaaaaaaggttttcaagttgataactgattcagcaacttcagatattcatcagaattctctgatatttgaagatggccaaataaaggctgaactgctcttggagctacctaaagaacagttgctgaattggatcttccaatgccttgcagaattatattcctcattgccgaccttgataaaatattagtcctttcaatgaactgtgattcttacatcatctagtaggcagccgccccatggccattgcccatcgcgataatagggtcctggggggtggtttaattaagagtgttagaactcttgtctctcatcagcggctgtccccacatgtacagtcatgaaaacttgagatagatctgtatcatatattcaagcagattgtgttaaccaactggcactttccatttcctcgcgggccggtcaatctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="78865" stop="77546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78566" g_stop="78335" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78334" i_stop="78186" i_length="149">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78185" g_stop="77846" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="578" r_length="346" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E596234" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78566" e_stop="78335"/>
          <exon e_start="78185" e_stop="77846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCTTCAGGAAAGATGGTTGGCATGAAAACAAACATGTCAAAAAAGGTTTTCAAGTTGATAACGGATTCAGCAACTTCAGATATTCATCAAAATTCTCTGATATTTGAAGATGGCCAAATAAAGGTGTCGTTTTGTTGATTTTACTACCTTCTCTATACCTATACTAATGCACTAAGGTTGCATAATCTTCATTTGAAAGAAAGGGGAAAAAATAATGTGTAAGACATGTTTTTCCATATTTAAGTGGCTGTGTAATGATGTGTCTTGTTCAGGCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCC-CCAC-GGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAA-GCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGT-ATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCA-TTCCTCGCGGG-CAGTCAATCTATAT</genome_strand>
        <mrna_strand>CGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTGGATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTAGCAGCATTTATGCTTCAGGAAAGATGGTTGGCATGAAAACAAACATGTCAAAAAAGGTTTTCAAGTTGATAACTGATTCAGCAACTTCAGATATTCATCAGAATTCTCTGATATTTGAAGATGGCCAAATAAAG.....................................................................................................................................................GCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTTGCAGAATTATATTCCTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCGCCCCATGGCCATTGCCCATCGCGATAATAGGGTCCTGGGGGGTGGTTTAATTAAGAGTGTTAGAACTCTTGTCTCTCATCAGCGGCTGTCCCCACATGTACAGTCATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCAGATTGTGTTAACCAACTGGCACTTTCCATTTCCTCGCGGGCCGGTCAATCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376933" ref_strand="+" ref_description="SGN-E376933 [TUS-20-C21]">
      <seq>tcggacgggcggataaggaagctcatgcacatttattctatcctgacaaatcacttctttcagaccatgcactagagagacttgctgctcttgaagagtgctgtgaacttggtcaaggttttcagcttgcagaaagagacatggctattagaggatttggcaatatttttggtgagcaacagacgggggatgtcggcaatgtgggcattgatctattctttgagatgttgtttgaaagcttgtctaaggttgatgagcatcgtgtaatatcagttccttaccctgcaatggagcttgatatcaatataaaccctcatcttccttctgagtacataaaccatttggagaaccccatgcaaatcatcaatagcgctgaaaaagcagctgaaaaggacattttcaacctgatgcaatttacggaaaatctgaggcgtcagtatggcaaagaaccttactctatggaaatcctattgaaaaagctttatgtcagaagaatggcagcagatttaggaattaccagcatttatgcttcatgaaagatggttggcatgaaaacaaacatgtcaaaaaaggttttcaagttgataacggattcagcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="81634" stop="78083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81334" g_stop="81261" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81260" i_stop="81037" i_length="224">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81036" g_stop="80863" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="248" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="80675" i_length="188">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80674" g_stop="80630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80629" i_stop="78692" i_length="1938">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.232" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78691" g_stop="78383" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="602" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E376933" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81334" e_stop="81261"/>
          <exon e_start="81036" e_stop="80863"/>
          <exon e_start="80674" e_stop="80630"/>
          <exon e_start="78691" e_stop="78383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTAGTATGCTCTTTTTCCTCTATATTTTTCTAATGACAGGATATGTAGGAGATGGTTCATATATTCTGTCTTCTTGCCTTTATTCTGGTAATGTTGTGGTATTTTCCAACAGAATAGAGGTTCTAATTTATCAAGGATGAATTTCATTATATGCATGTTGTGTGAAGTTATTTGCAGAAGATTGATCTTTATTATGTCTCTAATATAGCATTCATTTGACAATTTAGGAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTGGTCAAGGTTTTCAGCTTGCAGAAAGAGACATGGCTATTAGAGGATTTGGCAATATTTTTGGTGAGCAACAGACGGGGGATGTCGGCAATGTGGGCATTGATCTATTCTTTGAGATGTTGTTTGAAAGCTTGTCTAAGGTCTGTTTGCATCATCCTTTTATTTCATTATTACTGGTTACAAAGATAAAATTCACTGGTATGTGCCTAAGATAGGATTGGTTTCTGCATGCTATCCTCCCTTAGTTGAGATTATGATATTTGTATGCATCGATTATGTACCTTTCAAAATAAAAGGTAATGAGATCTGTTATCTTGTGTTATTCCAGGTTGATGAGCATCGTGTAATATCAGTTCCTTACCCTGCAATGGAGGTATTTAGTGCTCTCTATATTTTCTATAAGTTGATACATTAATCTAGTACAAAATCCATTTTACGTCTGTGCTTGTGTCCCATTCTCTAATACCTAATCCGTGCTGCTTTTTTAAGGAACTATCATTAATTGATTTTTTAGATGATTGGTTAGAATGTCAACTAGAGAAATTCGGATCTTAAATAGGAAAAATTTTGGGACACTATTTTGAATTAGTAAATGTTGAGTCATGTACGACCAGAATTTGCCTATCTACCTACTATAGTGAATTATGAGCTTTTCATTAGCACACCCAATTAAGCTTTGATTATGCTTTGATTATCATTGAAAGATATACTAGTCTTCTACAGACAAGAATCACAAACTAGACTTGACAATCGAGATGCATATGCACGATCATGTTTTTTTTTCTTTGTTCTTTCGGTAATTATGTATAAGTTGCAGTTATAAAGAACATATAAACAAGTTCTCTCACTATTATTTCAAAATTAAAGGGAGTCTTCTTGAGATTAGCTATTAAATATGTGAAAAGTTCTTAAAGTGTAGTTACGAAAGTATTCGATTTTCAGAGTGGGATGAAATTTCTCAAAAAAATTCATTCCATCTCAATATATATGACCTGACTTTGTTACCAGTTTCAAAAAAAGTATATATGACCTGACTTGATGTATGTCGACTGTTAGGAGTTGAGTATTTGATCAATTAGTACTTTGGGTTTTGATAAAAGAGTGTTGAAAAAAATAGTTTTAACACTACGTGATTTTTTCTAATCTTGTTAAGTCTTGATGGACAGAGTTACCCGATACCTGTGCTAGTGGGAGGTAGCAGGTACCTCTTCAAATTAGTCTATGTACATGAAAGCTGACCTCGAACACCTCGGTTAAAAAAAGAAGTATGGAAAAGTGAAGTTGTTAGTTTAAACGATGTGGTGTCAAGTTTGAATTATCTAGGATAGCATCAATTATACTATTTCATTTTGTTGGAGGAGAGGATTTTCAAGATTGTGAAAGTTGTCAACTATTTTATGTCGCTCCAAAAAAGAAAAGTACGTCAAGTTTTTTGGTTATATGGAGGACTAATTAGAAGTGAAAAAATAGCTAATAATCTAGAGGGTTTTTAAGTAACTGGGCAATTATACGTCTTATATGAAACATTAAAGGTATAAATCACTACTTCATTGCATGAAGTTTAAATAATTGTTAAAAAGGCACAAGAAAGAATGCAAGGAAACAACGACGAAGATAAGAAACTATACAGTAATAAATTATCGATTGGAAGACTGGAAGTCACGCATTATCTAGTTTCTTCAGTTGAGTCTCTAATTTACTGCCTTATCATCGTCTCTTGCTTCGGAACATGTAATAAGAGTACTAGGTAGAAAAATAAAGACAAAATGCTTGGAATTGGGATGCATGATCAGGGAATTAAGCTGGGTTAGTTATCTAAATGTTGAGCATGACCTCACTTGTCCGCTAGGCATGTGACATGTGGAAACGGCTTCGTATAGGAAACTATAGACTGGTGGTTCTACAAATAGCTTGTTAGAATTTGTGTCTCCTGTTAAAGTTATTCTGCTTTCACATCCAATGTGAATGATATAGCTTATAGTTTATCTGCTGAACTAATTTCATTGGCAATTACATATACCATTGTGAAAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCATTGTGATAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCATTGTGAAAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCAGTGAAAGATATAGCTTATAATTTATCTGCAGAACTAATTCCATTGACAATTGCACATAATGGGGGTATAACCTTTCAAAATTCTCTCACTTCCTCTTCAGCTTGATATCAATATAAACCCTCATCTTCCTTCTGAGTACATAAACCATTTGGAGAACCCCATGCAAATCATCAATAGCGCTGAAAAAGCAGCTGAAAAGGACATTTTCAACCTGATGCAATTTACGGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCTTCAGGAAAGATGGTTGGCATGAAAACAAACATGTCAAAAAAGGTTTTCAAGTTGATAACGGATTCAGCAACT</genome_strand>
        <mrna_strand>TCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTA................................................................................................................................................................................................................................GAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTGGTCAAGGTTTTCAGCTTGCAGAAAGAGACATGGCTATTAGAGGATTTGGCAATATTTTTGGTGAGCAACAGACGGGGGATGTCGGCAATGTGGGCATTGATCTATTCTTTGAGATGTTGTTTGAAAGCTTGTCTAAG............................................................................................................................................................................................GTTGATGAGCATCGTGTAATATCAGTTCCTTACCCTGCAATGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATATCAATATAAACCCTCATCTTCCTTCTGAGTACATAAACCATTTGGAGAACCCCATGCAAATCATCAATAGCGCTGAAAAAGCAGCTGAAAAGGACATTTTCAACCTGATGCAATTTACGGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCTTCATGAAAGATGGTTGGCATGAAAACAAACATGTCAAAAAAGGTTTTCAAGTTGATAACGGATTCAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233018" ref_strand="+" ref_description="SGN-E233018 [cLED-6-H18]">
      <seq>tcggacgggcggataaggaagctcatgcacatttattctatcctgacaaatcacttctttcagaccatgcactagagagacttgctgctcttgaagagtgctgtgaacttggtcaaggttttcagcttgcagaaagagacatggctattagaggatttggcaatatttttggtgagcaacagacgggggatgtcggcaatgtgggcattgatctattctttgagatgttgtttgaaagcttgtctaaggttgatgagcatcgtgtaatatcagttccttaccctgcaatggagcttgatatcaatataaaccctcatcttccttctgagtacataaaccatttggagaaccccatgcaaatcatcaatagcgctgaaaaagcagctgaaaaggacattttcaacctgatgcaatttacggaaaatctgaggcgtcagtatggcaaagaaccttactctatggaaatcctattgaaaaagctttatgtcagaagaatggcagcagatttaggaattaccagcatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="81634" stop="78155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81334" g_stop="81261" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81260" i_stop="81037" i_length="224">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81036" g_stop="80863" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="248" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="80675" i_length="188">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80674" g_stop="80630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80629" i_stop="78692" i_length="1938">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.232" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78691" g_stop="78455" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="530" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E233018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81334" e_stop="81261"/>
          <exon e_start="81036" e_stop="80863"/>
          <exon e_start="80674" e_stop="80630"/>
          <exon e_start="78691" e_stop="78455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTAGTATGCTCTTTTTCCTCTATATTTTTCTAATGACAGGATATGTAGGAGATGGTTCATATATTCTGTCTTCTTGCCTTTATTCTGGTAATGTTGTGGTATTTTCCAACAGAATAGAGGTTCTAATTTATCAAGGATGAATTTCATTATATGCATGTTGTGTGAAGTTATTTGCAGAAGATTGATCTTTATTATGTCTCTAATATAGCATTCATTTGACAATTTAGGAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTGGTCAAGGTTTTCAGCTTGCAGAAAGAGACATGGCTATTAGAGGATTTGGCAATATTTTTGGTGAGCAACAGACGGGGGATGTCGGCAATGTGGGCATTGATCTATTCTTTGAGATGTTGTTTGAAAGCTTGTCTAAGGTCTGTTTGCATCATCCTTTTATTTCATTATTACTGGTTACAAAGATAAAATTCACTGGTATGTGCCTAAGATAGGATTGGTTTCTGCATGCTATCCTCCCTTAGTTGAGATTATGATATTTGTATGCATCGATTATGTACCTTTCAAAATAAAAGGTAATGAGATCTGTTATCTTGTGTTATTCCAGGTTGATGAGCATCGTGTAATATCAGTTCCTTACCCTGCAATGGAGGTATTTAGTGCTCTCTATATTTTCTATAAGTTGATACATTAATCTAGTACAAAATCCATTTTACGTCTGTGCTTGTGTCCCATTCTCTAATACCTAATCCGTGCTGCTTTTTTAAGGAACTATCATTAATTGATTTTTTAGATGATTGGTTAGAATGTCAACTAGAGAAATTCGGATCTTAAATAGGAAAAATTTTGGGACACTATTTTGAATTAGTAAATGTTGAGTCATGTACGACCAGAATTTGCCTATCTACCTACTATAGTGAATTATGAGCTTTTCATTAGCACACCCAATTAAGCTTTGATTATGCTTTGATTATCATTGAAAGATATACTAGTCTTCTACAGACAAGAATCACAAACTAGACTTGACAATCGAGATGCATATGCACGATCATGTTTTTTTTTCTTTGTTCTTTCGGTAATTATGTATAAGTTGCAGTTATAAAGAACATATAAACAAGTTCTCTCACTATTATTTCAAAATTAAAGGGAGTCTTCTTGAGATTAGCTATTAAATATGTGAAAAGTTCTTAAAGTGTAGTTACGAAAGTATTCGATTTTCAGAGTGGGATGAAATTTCTCAAAAAAATTCATTCCATCTCAATATATATGACCTGACTTTGTTACCAGTTTCAAAAAAAGTATATATGACCTGACTTGATGTATGTCGACTGTTAGGAGTTGAGTATTTGATCAATTAGTACTTTGGGTTTTGATAAAAGAGTGTTGAAAAAAATAGTTTTAACACTACGTGATTTTTTCTAATCTTGTTAAGTCTTGATGGACAGAGTTACCCGATACCTGTGCTAGTGGGAGGTAGCAGGTACCTCTTCAAATTAGTCTATGTACATGAAAGCTGACCTCGAACACCTCGGTTAAAAAAAGAAGTATGGAAAAGTGAAGTTGTTAGTTTAAACGATGTGGTGTCAAGTTTGAATTATCTAGGATAGCATCAATTATACTATTTCATTTTGTTGGAGGAGAGGATTTTCAAGATTGTGAAAGTTGTCAACTATTTTATGTCGCTCCAAAAAAGAAAAGTACGTCAAGTTTTTTGGTTATATGGAGGACTAATTAGAAGTGAAAAAATAGCTAATAATCTAGAGGGTTTTTAAGTAACTGGGCAATTATACGTCTTATATGAAACATTAAAGGTATAAATCACTACTTCATTGCATGAAGTTTAAATAATTGTTAAAAAGGCACAAGAAAGAATGCAAGGAAACAACGACGAAGATAAGAAACTATACAGTAATAAATTATCGATTGGAAGACTGGAAGTCACGCATTATCTAGTTTCTTCAGTTGAGTCTCTAATTTACTGCCTTATCATCGTCTCTTGCTTCGGAACATGTAATAAGAGTACTAGGTAGAAAAATAAAGACAAAATGCTTGGAATTGGGATGCATGATCAGGGAATTAAGCTGGGTTAGTTATCTAAATGTTGAGCATGACCTCACTTGTCCGCTAGGCATGTGACATGTGGAAACGGCTTCGTATAGGAAACTATAGACTGGTGGTTCTACAAATAGCTTGTTAGAATTTGTGTCTCCTGTTAAAGTTATTCTGCTTTCACATCCAATGTGAATGATATAGCTTATAGTTTATCTGCTGAACTAATTTCATTGGCAATTACATATACCATTGTGAAAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCATTGTGATAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCATTGTGAAAGATATAGCTTATAGTTTATCTGCTGAACTAATTCCATTGGCAATTGCAAATACCAGTGAAAGATATAGCTTATAATTTATCTGCAGAACTAATTCCATTGACAATTGCACATAATGGGGGTATAACCTTTCAAAATTCTCTCACTTCCTCTTCAGCTTGATATCAATATAAACCCTCATCTTCCTTCTGAGTACATAAACCATTTGGAGAACCCCATGCAAATCATCAATAGCGCTGAAAAAGCAGCTGAAAAGGACATTTTCAACCTGATGCAATTTACGGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCT</genome_strand>
        <mrna_strand>TCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTA................................................................................................................................................................................................................................GAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTGGTCAAGGTTTTCAGCTTGCAGAAAGAGACATGGCTATTAGAGGATTTGGCAATATTTTTGGTGAGCAACAGACGGGGGATGTCGGCAATGTGGGCATTGATCTATTCTTTGAGATGTTGTTTGAAAGCTTGTCTAAG............................................................................................................................................................................................GTTGATGAGCATCGTGTAATATCAGTTCCTTACCCTGCAATGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATATCAATATAAACCCTCATCTTCCTTCTGAGTACATAAACCATTTGGAGAACCCCATGCAAATCATCAATAGCGCTGAAAAAGCAGCTGAAAAGGACATTTTCAACCTGATGCAATTTACGGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269941" ref_strand="+" ref_description="SGN-E269941 [cLEM-7-M17]">
      <seq>ttgatgaggaacagaggtttggtgtaaaacagaaggagaggattgcttcatttaaaacttcagtggatgtactcacactttcagcaacgcctattccgagaactctatatttagcattaactggatttcgtgacgctagtttgatctcaacaccgcctcctgagagagttccaataagaacacatctttcagcttacagtaaggacaaagtaatatcagctatcaagcatgaattggaccgtggtggtcgagttttttatgtcttgccccgcattaaaggtcttgaggatgttatggaattcttagaactggcatttccacatgttgaaatagctattgctcatggaaagcaatactcaaaacagcttgaggaaactatggaaagatttgcacggggagacattagaattcttatatgtacaaatatagtagaaagtggccttgatattcaaaacgcaaacacaatcatcattcaagatgttcagcaatttggacttgcacaattgtatcagttgcgtggaagggtcggacgggcggataaggaagctcatgcacatttattctatcctgacaaatcacttctttcagaccatgcactagagagacttgctgctcttgaagagtgctgtgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="91161" stop="80700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90858" g_stop="90734" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90733" i_stop="90499" i_length="235">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90498" g_stop="90359" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="279" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90358" i_stop="90223" i_length="136">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90222" g_stop="90152" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="350" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90151" i_stop="88295" i_length="1857">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88294" g_stop="88133" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="512" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88132" i_stop="81348" i_length="6785">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81347" g_stop="81261" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="599" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81260" i_stop="81037" i_length="224">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81036" g_stop="81000" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="636" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E269941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90858" e_stop="90734"/>
          <exon e_start="90498" e_stop="90359"/>
          <exon e_start="90222" e_stop="90152"/>
          <exon e_start="88294" e_stop="88133"/>
          <exon e_start="81347" e_stop="81261"/>
          <exon e_start="81036" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTTAAAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAGGTAATACCACCGAGTTTGTTTCAATTTATCCAAGCCCTGGATGGCTGTGATGAAGTATCCACTGTACTGTTGGGCAGTCCAACAGCTGAATTGTGCATCATTCATTCAGCTGTGTCAATGTTGGCTAGATTTGACTAATTGTGAAGTTACCTTCAACAAGTCAATGTTTTGCCTGCTCAATCTTTTTGTCTGTTTTGCTTTTTGTCTGCCTTCATTTTCTTTTCCACTCTAACAGTTTGATCTCAACACCGCCTCCTGAGAGAGTTCCAATAAGAACACATCTTTCAGCTTACAGTAAGGACAAAGTAATATCAGCTATCAAGCATGAATTGGACCGTGGTGGTCGAGTTTTTTATGTCTTGCCCCGCATTAAAGGTAATGCATTCTGTGCCTTTTATTTACATTAATTGTGAGTAGCATTATGTAATTTGGTGGCCAGGCTGTAGAGGAGTTTGCTGAAGTTCATCCATTGTACTCGTTGTAGTTACATGGGTTTGTCTTTTACTTGCAGGTCTTGAGGATGTTATGGAATTCTTAGAACTGGCATTTCCACATGTTGAAATAGCTATTGCTCATGGAAAGGTAATTATGGGATTTAATGAGTTGGCTTTAAGTTCTGCTATTGAACGTCAATCAATCAATCATTTGATCAATCAACTGTGTGATACCCTGTGACTTAAGCTGTTATGGGACTCTTTAAGCTTTCTTCTATAGCTTCTGCATTTACTAATCCTTGTTCTTCATTGGAGTTCTCTTCTGGACTGTCTGATGCCTTTTGACCAAGCATACATGAATCTAGGAAACTTTATGAGGCAGAGCACCATAAGAGAGGAATTGAGAATTGATTTATCATATGGGAGTAAAATTTTTCGGGTATGAAAATCAAACGCTTATTGTTCATAGGTCTTATGTTTAGTGGTACAGTTGGATGAAGGGTATATTAGACCTTTTGAGATAATCCAGGCCCTTCTCCTTACAACTTATTGAGATTAAACTAGTCACTGCAAATTATTTAGTATTGGAGTGAAATGGGACTGAATAGAGAAGAATAAATGATTCATGTATCCAACTCCAATTGACTTGGAACTGAAACGGGGTTGATTGATAGATTAATTATTCTGGTGGGACTATATGTTGAAAATTACTTTCAGTTACTGTAATAATTTTTAGCATAATAAGTTGTTAGGTTTAGGATAAATTTGAAATTTAAATTTCTATTAGGTTGTTGAGTTTATTTAGCTTTTTTGAATTTTTGTTATGAAGATTTTCTACGGATTATGTTTTCAAGTTGACTGTTCAAAAGCCCTTGTAAAATTATGGAGAGACATTTTCAACTTAAAAAAAAAAAAAACCAACAGTGATATCAAGAGCCTCATTGATCTTCCGTGATCTATGAGTTTATTTTAAAGAACTATTTTTCACCCGTTAGGTCTAGTTTTAACCCTTCAAGGCTAATTTCAACCCGTGCTTATTTTCTACGCGTCGACTATTTTCAACCTATACCAATTTTTAACCTATTTTCAACCATGACAAGCAACAATCTCTTTTTCAATACCCCAGAAATTTTCACCAACAAATATTATCAAATTTGGTCTGTGAGAATGAACTCATATTTTGAAACCTATGATTTATTATATGTTGTAATGGAAGAAAGATCCTTACAAACTCTCCTTGCAAATCCTATCACTGTCCAGATGAAAGCACTTTCAAAAGAGTTCTCAGACAAGATAAGATTATTGAGGGTGTTTTTTAAGGACAAAACCAAAAGAAGAAAAAGAAAGAAGAAGAGGAAGATCAATATAAAAATTGTGCAAGTTTAAAATAATCAAAAGAATTCAGCACCAATTGCCAAACAGAAATTGAGGAGGAGCAATTTTTTAAAATTGCAGTAACTAAAGCCAAGGAGGATTGTTGAAAATTGCTTTCAGTTACTGTAGTAATTTTTAGCATAGTAAGTTGTCTGATGTCTATTACATTGTTGTAGTGGTTAATATTACTTAGCCTCTTTGAATTTTTGTTATGCAACGTTCTTGTAGATTATGTAATCAAGTTGGTTAGTTGAATCCCTTCTATGCTTGATAAAATTATGGATAGATGTTTTCAACCCTTTTTTTTTGCACCATATTTTAAAAAAAAAACAACACAATAATGAGAGCAAATTTCTTTAAAGAGTCATGTCGCCTTGTTGCAACAGCAATGGTGGCTGATATTACATATTCAGTATTACTGGTACTAAAGTAGAATTTAAGTTATTGGTGCATTTGTTCTTGCTATTGCTCTAAAAAGTTTATGCTTTTTCAGAGCATTAAACTTTGATAGAATACTTATGTTCATTCAGTCTTTAGACATAATCTAAGATATGAACACATATTTACATAGCATCTACACTGCATTATTCAGTTCTAGTGGTCTCACATGCCATTTCATCTTTTTTGGCAGCAATACTCAAAACAGCTTGAGGAAACTATGGAAAGATTTGCACGGGGAGACATTAGAATTCTTATATGTACAAATATAGTAGAAAGTGGCCTTGATATTCAAAACGCAAACACAATCATCATTCAAGATGTTCAGCAATTTGGACTTGCACAATTGTATCAGGTTTTTACATTCTCTTGCCTAAACGAACAGCAAGATTTTGGTGTCATGTTTTTTTCCATCCCTATTGGTAGTTTTTTCCTCCACTGTTTCAGTTACATTAAAGCAGGAAGCAAATCATTTCTTTTTATCTGTTGAATTTTCTTCGGCATAAGTGATAGAAACATAGTTTATTTTGACGCAGCCTTTTGTTCAATTTTACATGAATTTGATGTTCCTTGACAGCATTTGCTGTTTTCCCAGCTCTGAGTTATATAGAATCTCTCTGCTTCCTTAATATACCTGATTAGCAACCAGCTTTTGACAAAAAAAATGTTCTCTACTTTTTCTCTCTCTTGAAGAATGTGCCTAGAAGTCTTCCCACCTTTTCCGGTTAATTCCGAGGCTCTTTCCGGTGATAATCATGGTCAGAAACATTTATTTCACTGCTGGGAAAAAATCTTTTGAGGTAGTAGACATTAGCGAAGACCATTCACGATGGTTTCTGTGGATCAAGCGGAACAGAAGATTTACAAGAAGAATTAAAATAGACGAAAATAACTTAATATGGGTCTGCGAAGCGATGAAACAAGCATCAAGGGGAACAGGCTGTCTATGTAGGAGATGGCGGAGGAAAGTTGAGGCATACCTCTACAGAGTTGTACAAAATTTCAACATGTATGGTCGTTTTGTCAGGATCGAAGCAGTGCTTGGTGACCGAAAATCTTCAGTGATTATCCCAGAAATAATCTGCAATGGCGGATGGGCTGAAATAGCAGAAAAAATTCTAGGTCAGCTGCGTAGCACTTCAAAGCCTCCTAGGGTTCCGCTGGCAAGAACATTCAGGGAGGCGGCTTCTCCTTCTGACTAGCCAGTTCATACTAAAACCGCAGCCATTGAAGTTCAAAACTCCATCAAAATCAGCCACGCAGCAGAGTTGGATAGTTCCAAATTCCTCTCACTATACTTGATTGGAATATTCAACGATCCTTTCCACTCAAATCCCAACACCGACATCATCCAGAAGTGGTTCTTAAACAGGTGGAAAATCACGGCGGGCCTGAAAATCACTCCTCTCTCACACAATCAGTTTCTATTCGAAATGCCTTCACGACAGGAGGCAGCGCGGATTATGGCAGGAGAATGGTTTTGGAATGGTCGAAAATTGACTCTCAAGTGGTGGTCGCCAGTGGTCGGAACTGAAATTGACACACCAATCTCAGAATTTCAATGGGTTAAGGCCTTGGGCATTCCCCTACATGCTTGGTCAGAAAGCACTTTTAAGGTTATTGGTGATATGTGTGGGGGATTTTGTGGATACAGATGAAGATACAAAAAGGAGGAATCATCTGTATTGGGCTCTGATCTGTGTCAAGAAGTCGGGAACAGTCCTTCCAAACAAGATTAAGCTGGAAGTAGGAGACCGAAACATTGAAATCACGATTATAATTGACACCCATGCAAAATTTTGGGTGGCCGGAAATAGTAAAAGCAGTGCCGGAGATAGCAACGCGACAAACGATGGCAAAAGGGAAGCATCGAGTCTCGCACCGCTAAAGTTTGCTGACAGGCAGGTGGGGCAGCACGTGATTTGTCCAGAAATTTCAAAATTCTGCGATGGAGTGGGACCCTCAGCATATAAAGGTAAAATTGCAAAGCTCAACAATGTTTAATGGCCGCTGGAGTATCACAAACATGGGCCAAAAAGAAGACAACATACTAAAACATTCTGGAAATCAAAAGGGTTAGCCCAAAATAAATATGTTGGCACTGCACCTCCCAGCCTCATCGTGTCTAACACTTTTGACCCTTTAACGAAGGACACAGAAATTTCAAGTCTCAACCAGGAGGCTGAAATTAGTGAAGCATTGGCTGGGTACATGTCAGAACAACTCGATGCAGATGATGAGAGTGAAAAGATCCGAATCCCCAAGGCACCACGAATCACTCCTCAGAATAATCAATCAATCTTGGCAAGTGCATCAGATTCATAATACTCTTCCCAGAATTTCTGTGACTCTTCATCTCTATCATGCAACGATGAAGTCAACCTCACCTCAACAGTCATTGAAACCTCCAAATGGACCAAGCTTGTGATGGTGAAAGCTTGCAAGGCTTTCGGGGTAAACGTTGCTGGATTTGAACACGAACTCCTAAATATGGTGTATAGATTGGAACAACAAAAACAACTGCAGTTACAACAAAAACAAGTAATTCAGGGGCAGGACAACCCAAAAAGGAAGAAGAAGGGAGAGAATGAACTAAAGAAGCTTCTTTGTGACCTGATACAACATAATGGCGGTTAGGGGTAGGAAATACAAAGCCTTCTCTGGATGAAAGTTAAAATCTTGAGTTGGAATGTCAGGGGGCTCAACGAGATCAATAAAAGGAGCACAATAAAGTCCTTAATCAGACAGTGGAATCCCGATGTAATATGTTGCAGGAAACCAAACTAGATGAATTGTCGAGCTTGATCAGTGGGCAGTTATGAGGAAACAGATGGGCCAGCTGGGCAGAACTAAAAGAAAATGGTACAAGGGGAGGCATCATCGTTCTATGGGACAAGCGGAACTGGGTAAATATTAGCACACATCAGGGGATCTACACAGTCTTATGTATGCTGGAAAGTGTGCAGGTTAATTTTCGATGGTGTTTCACTGGAGTTTATGGGCCTCATACTAACATTGAAAGAGAAGATCTTTGGTATGAGCTTGCAGCAATAAGAGGATTGTGGGATGACAGTTGGGTCATAGGAGGCGACTTCAATGTTTGTCGCGTTGAAAGTGAGAGATACAATTGCATAAGAAGGTCCAAGGCTATGAGTAGCTTCAATGACACCATCTCGGACCTTGGCCTCATGGATTTGCCTTTGCAGGGGGCATTCTATACCTGGACTAGAGGAGATGATCCAATTCAAGCATCAAGAATTGATCGGTTCTTGATATCCCCAGAATGGAATGATTGTTTTAACGCAATCAATCAATTAGCACTCCCTAGTGTAGTCTCCGATCACAGGCCTATACTCTTGAAATGTGGGGTTGGGAGTCTAGTTCATCTTAATTCAAGTTCGAAAATATGTGGCTAGAGGAAGAAGGCTTCTTGGAGAAGGTCAAAACATGGTTGCAAAGTTACTCTGTGAATGGGACACCAGATTTTATTTTATACTAGAAGTCAGATACCTGAAGAAAGATATCTCAAATTGGAATAGAGAGGTATTTGGCAAAATTGACACTAACAGAAACAGGGCACTGGAAGAATTAACTGCTATCGAATATGCTTCAGAGAATAGAGCGCAGACTCCAGAAGAGAATCCAAAGTTCTATGTCTCAAGTTGGAATTGAAGAAGTATCTTGGAGGCAAAAATCAAGATGCTTATGGCTTAAGGAGGGTGATAGGAACACAAAATATTTTCAGAAAGTTTCCAATGGCCGTAGGAGGAACAATACCATCGATAAACTCAAAGTAGGTGAAGTCATAGTGGATGATAAAGCTGTAATCAAAGAAGAAATTTTGAGTTTTTACCAGCAACTATACACTGAAAATGAACCTTGGAGGCCCACTGTTAGCTTTGAAAGTATGACATCCATCTCCCTGGATGAAAGAGACTGGCTGGAAAGAAATTTCGAGGAGGAAATTCATGCTACCATCAAGACTTGTGCACCTGCCAAAGCCCCATGACCGGACGGATTCAGAATGGCCTTTTCCCAGAAGGCATGGGATGTCATTAAATATGAAGTAATCGGGGCCCTAAACCACTTTCACCATAACTGTCATATGGTCAAGTCCTATAATGCTTCCTTTATTGCCCTTATTCCTAAAAAGAAAGGGGCAATAGAATTAAAAGATTACAGACCCATCAGTCTTATTGGGAGTGTGTACAAGTTAACATCAAAGATTCTTGCGGAGAGACTTAAATCTGTAATTGGGAAGTTGGTATCAGGCTACCAAAATGCATTTGTTAAGGGTAGACACATCTCAGATGCTGTATTGATAGCAAATGAGGTGCTGGATTGGAAGCAGAAATCAGGAGACGCAGGGTTGTTGTTTAAACTTGACATAGAGAAAGCTTTTGACAAGCTTAATTGGGCTTATCTGTTCACAATTTTGAGAAGGATAGGATTCGGGAGTAGGTGGATCAAATACAGCTTGACAACGGTAAAATACTCTGCTCATTAACAGAGAGCCTGTAGGTTTTTTCTCTCCTCAAAAAGGGTTGAGGCAAGGAGATCCCCTCTCTCCCTTCTCTTCATCCTCGCTATGGAAGGCCTTAGTAAGATGCTCCAAAAAGCATGTCAACTACAATGGATTGAAGGCTTCAACGTAGGCAGCCCCACGGGAAACAATGTCACAGTTTCACATTTGCTGTATGCGGATGATACTCTGCTATTTTGTGGGGCAGATAGATCACAAGTTATTAAGCTAAACTTGATTTTGCACATCTTTGAAGCTGTCTCTGGACTACACACATATGTCAAAAAGCATTATCTATCCAGTAAACTCAGTGCAGAATTTGGTAGAGCTAGCTGGAATCATGTCCTGCAACATAGGGTCCTTCCCAACAACTTATCTTGGGTTGCCCTTAGGTGCAAATTTCAATGCTAACGAGATATGGTTGGGAATAATTGAGAAGTTAGAAAAAAGACTAGCAACATGGCAAATGCAGTATCTTTCTTTTGGAGGAAGAGTTACATTGATTAATAGTGTAATGGACAACATCCCAACATATCACATGTTTCTTTTCCCTATACCATCAAAAGTTCTCAAGAAGCTCGATAGAATGAGAAGGAATTTTCTATGGGAAGGAAACAACAAGGATCACAAGTTTCACTTGGTTAAATGGGAAAAAGTGACAACCTAAATCTCAAGGGGGTTTGGGCATCAAAGATCGTGTAGCTAACAACAAAGGCATGATGATGAAATGGTTATGGAGGTACGGAACTGAAGACATTGGTTTGTGGAAAGAGGTGATCAAAGCTAAACATGGTGAGCTTACTCACTGGTCCACAAATGTCTCAACAGATGCATATGGAGTTGGTCTATGGAAAAGCATCAGTAAACTTTGGCCAGAGTTTGCTGGGAACGTCACATTTAGAGTTGGCGATGGATCTCACATCAAATTTTGGAAGGACATATGGTTGGGAGACAACTTTGGGTGAGGAATTTCCAAGTTTGCACCTCATTGCAATTGAACCAAATCTACCATTGCATCCAACAGATCAGACGACAGTTGGGACCTAAGGTTCAGGAGAAACCTAAATGACTGGGAACTTAATGACATATTTGCCTCTTTGCCAAATTGCAGCCCTGCTCCTTTTCACCCCAAGAGCCTGATAGATTGAAATGGGGTAACTCAAGAAAAGGTCACTACACAGTCAAGGAAGGATATCACAGCTTATGCTCAAGGAACTCAATGATTGACAAATGGCCATGGAAGCATATATGGAAGACAAAATTACCTACCAAAGTGATCTGTTTCAGTTGGACTGCACTACATAACTCATGCCTCACACATGATAATCTCTCCAAAAGGAAATTCCAGCTTGCTAACCGATGCTATTTATGCCACAAGCACACAGAAAGTGTCAACCACTTGCTACTACACTGCCCAGCTGCCTCACACCTATGGAATATGTTTTGTTGTTTTTCTGGCCTTTCTTGGGTCATGTTTTTCTCTGTTACGGATACTCTTGAAAGTTGGAATTCACGGGATGTTGACAAAGCCACCAAGAGTATGTCGATGATGATCCCTGGTGTTATCTTCTGGTGTTTATGGACAGAGAGGAACAAAAAATGTTTCGATGGAATTTCAACTTCTAGAGATCTCTGGCGAGGAAGATGTCTAGTTAGCCTTTTTAGTTGGTCCAAACTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGCTCAGGAAGAGGCTACAAATCCTTTTTTGTGAGCTTAAATGATCTATCCTTCTAAAGCTTGCATCTTCTTGATGCCTTGAAATGAATCTACTTACTTCATCAAAAAAAAAAAATACCTGATTAATCACACGAGACGGTTAATGGTGCTAAAGGAGAAAATTTACCTCTTGGGATAACTTAGGTAGCGGGGGTTTAGTGTAGCAAGTATTTGTTACATTCAAAAACTCATTGTAGTCTTGGGATTACTTGAAGTTCAATAGCATTTATAGTATTATTTTCCTTTTAGTGGCATTACAGTCAAGCTCAGATTTTTATGAGACAAGGAATTGTTACAGAGAGAACAAATGTCGTTGAACCAGCCTTTCTGTGATATTTGTGAAGTCTTCCCTTGTTTCTTTCATAAGGAGTTTCTGGGGTTTGGTTCTCTTGTGATGTTAACCATGGGAAAACACTGACCTGCTATGCAGCTGTGGTAATGAAGTCAATCAATTGTCTTCTACTTAATGTAGTGATTTCAAACTCCTATGAAGAAGCATCTTTTCTATCTTTCCCAGTTTTTTTTTTCACTGTATTGACTACTAAAGTTGATTGGTCAAAGATTTTCAGCCCTTAATTTCTAAACTTGGCCCCTGCCGCTGTTAGCTAAATCATTAACTTGTCTCTTAATAGCTTATGGTCAACACTGTAGATTTTGCAGTTAGATATCTTTTAGCAGATTTTATGAGACTCGTATTATGACCATTGGCTAATCTGGACATGATGATGTGTTTCTGACAGTTCCATATCTTTACTTTTCAGATTCTTCTCTATTGTTGTTATTGATTGTTATAATTTCAATTGCTGTGACTTCTATACTCTTTCTAATTCCTACTCCCTCTTTGATTATTGTAGTTGCGTGGAAGGGTCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTAGTATGCTCTTTTTCCTCTATATTTTTCTAATGACAGGATATGTAGGAGATGGTTCATATATTCTGTCTTCTTGCCTTTATTCTGGTAATGTTGTGGTATTTTCCAACAGAATAGAGGTTCTAATTTATCAAGGATGAATTTCATTATATGCATGTTGTGTGAAGTTATTTGCAGAAGATTGATCTTTATTATGTCTCTAATATAGCATTCATTTGACAATTTAGGAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTG</genome_strand>
        <mrna_strand>AGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTTAAAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAG...........................................................................................................................................................................................................................................TTTGATCTCAACACCGCCTCCTGAGAGAGTTCCAATAAGAACACATCTTTCAGCTTACAGTAAGGACAAAGTAATATCAGCTATCAAGCATGAATTGGACCGTGGTGGTCGAGTTTTTTATGTCTTGCCCCGCATTAAAG........................................................................................................................................GTCTTGAGGATGTTATGGAATTCTTAGAACTGGCATTTCCACATGTTGAAATAGCTATTGCTCATGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTCAAAACAGCTTGAGGAAACTATGGAAAGATTTGCACGGGGAGACATTAGAATTCTTATATGTACAAATATAGTAGAAAGTGGCCTTGATATTCAAAACGCAAACACAATCATCATTCAAGATGTTCAGCAATTTGGACTTGCACAATTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTGGAAGGGTCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTA................................................................................................................................................................................................................................GAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487056" ref_strand="+" ref_description="SGN-E487056 [cSTE-24-I1]">
      <seq>gtttttttttttttttttttgatgaagtaagtagattcatttcaaggcatcaagaagatgcaagctttacaaggatagatcagttaagcacacaaaaaaaaggatttgtagcctctttctaagctatagagctaacaaaatccaagaagagttctaaattatttacaggggtcagtttggaccaactaaaaaggctaactagacatctgcctcgcaaaagatttctagaagttgaaattccatcaaaacatcttttgttcctctttgtccataaacactaaaagataacaccaggaatcatcatcgacatacacttggtggctttctcaacatcccgtgaactccaactttcaagagcatccctaacagagaaaggcatgacccaggaaagaccaaaaaagcagcaaaacatattccagaggtctgaggcagctgggcagtgcagtagcaagtgattgacattttctgtgtgcttgtggcagaaatagcatcggttagcaagctggagtttccttttggagagattatcctgtgtgaggcatgagttatacagtgcagtccaacagaaatagatcactttggtagggaattttgtcttccatatatgcttccatggccatttgtcaatcattgagttccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="81824" stop="83057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82123" g_stop="82757" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="642" r_length="637" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E487056" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82123" e_stop="82757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTTTTTTTTTGATGAAGTAAGTAGATTCATTTCAAGGCATCAAGAAGATGCAAGCTTTAGAAGGATAGATCATTTAAGCTCAC--AAAAAAGGATTTGTAGCCTCTTCCTGAGCTATAGAGCTAACAAAATCCAAGAAGAGTTCTAAATTATTTACAGGGGTCAGTTTGGACCAACTAAAAAGGCTAACTAGACATCTTCCTCGCCAGAGATCTCTAGAAGTTGAAATTCCATCGAAACATTTTTTGTTCCTCTCTGTCCATAAACACCAGAAGATAACACCAGGGATCATCATCGACATACTCTTGGTGGCTTTGTCAACATCCCGTGAATTCCAACTTTCAAGAGTATCCGTAACAGAGAAAAACATGACCCAAGAAAGGCCAGAAAAACAACAAAACATATTCCATAGGTGTGAGGCAGCTGGGCAGTGTAGTAGCAAGTGGTTGACACTTTCTGTGTGCTTGTGGCATAAATAGCATCGGTTAGCAAGCTGGAATTTCCTTTTGGAGAGATTATCATGTGTGAGGCATGAGTTATGTAGTGCAGTCCAACTGAAACAGATCACTTTGGTAGGTAATTTTGTCTTCCATATATGCTTCCATGGCCATTTGTCAATCATTGAGTTCCTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTGATGAAGTAAGTAGATTCATTTCAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGATCAGTTAAGCACACAAAAAAAAGGATTTGTAGCCTCTTTCTAAGCTATAGAGCTAACAAAATCCAAGAAGAGTTCTAAATTATTTACAGGGGTCAGTTTGGACCAACTAAAAAGGCTAACTAGACATCTGCCTCGCAAAAGATTTCTAGAAGTTGAAATTCCATCAAAACATCTTTTGTTCCTCTTTGTCCATAAACACTAAAAGATAACACCAGGAATCATCATCGACATACACTTGGTGGCTTTCTCAACATCCCGTGAACTCCAACTTTCAAGAGCATCCCTAACAGAGAAAGGCATGACCCAGGAAAGACCAAAAAAGCAGCAAAACATATTCCAGAGGTCTGAGGCAGCTGGGCAGTGCAGTAGCAAGTGATTGACATTTTCTGTGTGCTTGTGGCAGAAATAGCATCGGTTAGCAAGCTGGAGTTTCCTTTTGGAGAGATTATCCTGTGTGAGGCATGAGTTATACAGTGCAGTCCAACAGAAATAGATCACTTTGGTAGGGAATTTTGTCTTCCATATATGCTTCCATGGCCATTTGTCAATCATTGAGTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613655" ref_strand="+" ref_description="SGN-E613655 [63432]">
      <seq>cacaggttatgctcaaggaactcaatgattgacaaatggccatggaagcatatatggaagacaaaattacctaccaaagtgatttgtttctgttggactgcactgcataactcatgcctcacacaggataatctctccaaaaggaaactccagcttgctaaccgatgctatttctgccacaagcacacagaaaatgtcaaccacttgctactgcactgcccagctgcctcagacctctggagtatgttttgttgcttttttggtctttcctgggtcatgcctttctctgttagggatgctcttgaaagttggagttcacgggatgttgagaaagccatcaagagtatgtcgatgatgatccctggtgttatcttttggtgtttatggacagagaggaacaaaagatgttttgatggaatttcaacttctagaaatcttttgcgaggcagatgtctagttagcctttttagttggtccaaactaacccctgtaaataatttagaactcttcttggattttgttagttctatagcttagaaagaggctacaaatcctttttttgtgagcttaactgatctatccttgtaaagcttgcatctttttgatgccttgaaatgaatctacttacttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="83070" stop="81827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82770" g_stop="82127" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E613655" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82770" e_stop="82127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCTTATGCTCAAGGAACTCAATGATTGACAAATGGCCATGGAAGCATATATGGAAGACAAAATTACCTACCAAAGTGATCTGTTTCAGTTGGACTGCACTACATAACTCATGCCTCACACATGATAATCTCTCCAAAAGGAAATTCCAGCTTGCTAACCGATGCTATTTATGCCACAAGCACACAGAAAGTGTCAACCACTTGCTACTACACTGCCCAGCTGCCTCACACCTATGGAATATGTTTTGTTGTTTTTCTGGCCTTTCTTGGGTCATGTTTTTCTCTGTTACGGATACTCTTGAAAGTTGGAATTCACGGGATGTTGACAAAGCCACCAAGAGTATGTCGATGATGATCCCTGGTGTTATCTTCTGGTGTTTATGGACAGAGAGGAACAAAAAATGTTTCGATGGAATTTCAACTTCTAGAGATCTCTGGCGAGGAAGATGTCTAGTTAGCCTTTTTAGTTGGTCCAAACTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGCTCAGGAAGAGGCTACAAATCC-TTTTTTGTGAGCTTAAATGATCTATCCTTCTAAAGCTTGCATCTTCTTGATGCCTTGAAATGAATCTACTTACTTCATCAAAAAAAAAAA</genome_strand>
        <mrna_strand>CACAGGTTATGCTCAAGGAACTCAATGATTGACAAATGGCCATGGAAGCATATATGGAAGACAAAATTACCTACCAAAGTGATTTGTTTCTGTTGGACTGCACTGCATAACTCATGCCTCACACAGGATAATCTCTCCAAAAGGAAACTCCAGCTTGCTAACCGATGCTATTTCTGCCACAAGCACACAGAAAATGTCAACCACTTGCTACTGCACTGCCCAGCTGCCTCAGACCTCTGGAGTATGTTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCCTTTCTCTGTTAGGGATGCTCTTGAAAGTTGGAGTTCACGGGATGTTGAGAAAGCCATCAAGAGTATGTCGATGATGATCCCTGGTGTTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGTTGGTCCAAACTAACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGTTCTATAGCTTAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTTTTGATGCCTTGAAATGAATCTACTTACTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378379" ref_strand="+" ref_description="SGN-E378379 [TUS-24-J6]">
      <seq>acctccctaatgaaaccaaaaggccacggactttgagcaagttaagcgatactagtgcatgggagaggagaaggatgaagggaaaagttgcagttcagaaaatggttgtggatctaatggagctatacctacacaggttaaaagggaaaagggctccataccccaagactccagctatggctgaatttgcatctcagtttccttttgaacccacaccggatcagaaacaggcattctcagatgtagaaagggacttgacagagagtgaaaatccaatggacagattaatttgcggagatgttggttttggtaaaactgaggttgcactgcgtgccatcttctgtgtagtctctgcagggaagcaagctatggttctagcgccaacaatagttttagctaagcaacattttgatgttatctcagagagattttcaagatatcctaacataagagttggacttcttagcaggtttcagaccaagtcagagaaagaggagtacttgagtatgattaaagacggccatgtggacattattgttgggactcattcactacttggcaatcgggttgaatataataatctgggtctacttgtggttgatgaggaacagaggtttggtgtaaaacagaaggagaggattgcttcatttaaacttcagtggatgtactcacactttcagcaacgcctattccgagaactctatatttagcattaactggatttcgtgacgctaggtaataccaccgagtttgtttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="93905" stop="90409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93605" g_stop="93380" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="230" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93379" i_stop="93020" i_length="360">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93019" g_stop="92774" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="476" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92773" i_stop="91966" i_length="808">
            <donor d_prob="0.662" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91965" g_stop="91831" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="611" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91830" i_stop="90859" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90858" g_stop="90709" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="760" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E378379" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93605" e_stop="93380"/>
          <exon e_start="93019" e_stop="92774"/>
          <exon e_start="91965" e_stop="91831"/>
          <exon e_start="90858" e_stop="90709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCATGGGAGAGGAGAAGGATGAAGGGAAAAGTTGCAGTTCAGAAAATGGTTGTGGATCTAATGGAGCTATACCTACACAGGTTAAAACAAAAAAGGCCTCCATACCCCAAGACTCCAGCTATGGCTGAATTTGCATCTCAGTTTCCTTTTGAACCCACACCGGATCAGAAACAGGTTTTTAATTGTCTATTCTGTATCATTTAAATTCTGATGTCCACCTGCATGGCTTTTTCCGCAAAATATCAGCTGTTGTTGGTTCCTTCCATGTGTATAGTTTAGCTGCAATTGTTGTTTTTCATCCAGTTGGTTCAGCAAGACATGTATGAAAATTTTAACAACCAAAAAAGTAACAGTGTTGTTGTCTTGCCACATTCTATTAAGAATAACTTATTGCTTCTCATTGTGCGTAAAGTGTAGTTATCTTGGCACATTTTAGTCAGAGTAACCTATTGCCTGAAAAGTTCAATCATTTTTACTACTTAACCTATAATGGAAAACTTTTCTGTTTCTTACAGTATTGAATTCCAATGACAGGCATTCTCAGATGTAGAAAGGGACTTGACAGAGAGTGAAAATCCAATGGACAGATTAATTTGCGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCCATCTTCTGTGTAGTCTCTGCAGGGAAGCAAGCTATGGTTCTAGCGCCAACAATAGTTTTAGCTAAGCAACATTTTGATGTTATCTCAGAGAGATTTTCAAGATATCCTAACATAAGAGTTGGACTTCTTAGCAGGTTTCAGGTGCATAACTTGATTTTTATCAATATGCTGCTGATGCCTAAGAAGCACTTTCTACTTGAATTCTACTCTTTATCATTTAAATTTTAGGTGGTTTTGTAAAAGAATGTGGTTGCTTCTGACCTTCAATGTTAAATATTTGCTCATAGTGTTTTCTTGCAAAACCTAACTTCTCACATCTCATGATTTCTTAAGATTAGCTTTCTTGACAATAGGTCCATGGCAAGAAAACATATCTTAAGTTCATCGGAGTGCCTTATAATAAGGGATTCTGTTGATGTACTTCCATGAAACTTAAGCTGACATAGACACGTTAAATCTTATGTCCATTGAGGATTTTATGCAGTTTGAGATTGTTTCACAAGTCATGCTTAATTGATTCTTTTTTTCTATAAGGGTAACTTGTATTCATATTAAAAAAAGACTTCAAACAGGTTCTTTGTTGATTGTTATTTATTTCGAACTCACATAAATTAAAAAAAAGTCACCTTGTTGAAATGGTTTAATATTATTTAATATATTTATATATACTTCTCTTAAATATTGTCTACCTCTTTGATTATTAAGAAGACCATTTAAATATGCAAGGAAGTGCACCAAACTAGAAATGATATCTTCTTCTCTTTCTTTTTAGTATTTTCCTTCCAAAATCTGAGTGATTATGGTTCCCAATATGAACTTCTTAAATATGTTATTTTAGTTTTAGTTCTTTGGTGTTGGCACTGTTGTTCACCTTGTCTAAGTAAACACCATATTTTTATTCGAAGTCCTAATTTTAGTTTTCTTTGCCACCGACTTTTGCTCACTCAAGACCAAGTCAGAGAAAGAGGAGTACTTGAGTATGATTAAAGACGGCCATGTGGACATTATTGTTGGGACTCATTCACTACTTGGCAATCGGGTTGAATATAATAATCTGGGTCTACTTGTGGTTGATGAGGAACAGGTATTTACAGATATCTAAATGCCATTATATTTTGGATTTTCTTTATACAACCATGGTATCGTGACCAACTTGCGTGCACCTTGACTAATCCCACGAGATGCCACCTCCCACCAGCAACAAGAACTATATACCAGGTAATCCCATGAGATGCCACCTCCCACTAGCAACAAGAACCATATACCAGGTAACTTTATCCACCCAGGCTTGGACAAATGGGAAGACCTAGTGTTCCGGTCTCTGTTGGGATTTGAACTTAAACTCATCATTCTTAACCCAGTACATTGACCACTAGGCCACACACCTGGGTGCCATCGTATTTTTTGATTATTTTCTTGTCATTTGCATCGAAAGGAAGTAATGTTTGGAATTTAGTCATGGATGAAATAGGTTGGTTACTTGAGTGAGTAAGACCTTATAAGGAGGAAAAAGTATGCGTAAACTCATTGATCTAAACCTGATAATGCATTCTTGGTTTGATCTATAATAAGCCCAACTATGACTATTTTTTCTTATTATCCCGTGTTTATAAAAAGCTCAAAAGAAACTTCATCCAAAACCCAAAAATGAAAAAAGGTATATTAGCTCGAATAAAACCATGAAGAATCCAGGGAAAGGTGTATTAGCTTATTAGATGGGGCAAGCGTAGGGTACTGTTTCTTTTTTCTTTTGATAGGGTCCATGATGAAATGGAGACTTACGGCCTAGCTGGTGTTCATTTATTCATGGTACTAAGTTTTCTCGTTATCACTTAAATGAATAGTAAATTGAATTTATTGAAGAAGATAGTCAACCTCAGTTTCAAAAAAGAAGAAGAAGATAGTCAACCCTTAACCTTCCCCTGTTAGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGTTTGTGTGTGTCTCTTTTGGACATCCTTCATACCTATAGCCCGATTCATCATATTTGATCTCCCTCTGAATTACTCTTTGTCCTTTCAGAGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTTAAAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAGGTAATACCACCGAGTTTGTTTCAAT</genome_strand>
        <mrna_strand>CCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCATGGGAGAGGAGAAGGATGAAGGGAAAAGTTGCAGTTCAGAAAATGGTTGTGGATCTAATGGAGCTATACCTACACAGGTTAAAAGGGAAAAGGGCTCCATACCCCAAGACTCCAGCTATGGCTGAATTTGCATCTCAGTTTCCTTTTGAACCCACACCGGATCAGAAACAG........................................................................................................................................................................................................................................................................................................................................................................GCATTCTCAGATGTAGAAAGGGACTTGACAGAGAGTGAAAATCCAATGGACAGATTAATTTGCGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCCATCTTCTGTGTAGTCTCTGCAGGGAAGCAAGCTATGGTTCTAGCGCCAACAATAGTTTTAGCTAAGCAACATTTTGATGTTATCTCAGAGAGATTTTCAAGATATCCTAACATAAGAGTTGGACTTCTTAGCAGGTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGTCAGAGAAAGAGGAGTACTTGAGTATGATTAAAGACGGCCATGTGGACATTATTGTTGGGACTCATTCACTACTTGGCAATCGGGTTGAATATAATAATCTGGGTCTACTTGTGGTTGATGAGGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTT-AAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAGGTAATACCACCGAGTTTGTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247644" ref_strand="+" ref_description="SGN-E247644 [cLEF-42-P14]">
      <seq>ggcatctcgtttgctctaccgttacaacctccctaatgaaaccaaaaggccacggactttgagcaagttaagcgatactagtgcatgggagaggagaaggatgaagggaaaagttgcagttcagaaaatggttgtggatctaatggagctatacctacacaggttaaaacaaaaaaggcctccataccccaagactccagctatggctgaatttgcatctcagtttccttttgaacccacaccggatcagaaacaggcattctcagatgtagaaagggacttgacagagagtgaaaatccaatggacagattaatttgcggagatgttggttttggtaaaactgaggttgcactgcgtgccatcttctgtgtagtctctgcagggaagcaagctatggttctagcgccaacaatagttttagctaagcaacattttgatgttatctcagagagattttcaagatatcctaacataagagttggacttcttagcaggtttcagaccaagtcagagaaagaggagtacttgagtatgattaaagacggccatgtggacattattgttgggactcattcactacttggcaatcgggttgaatataataatctgggtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="94779" stop="91551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94479" g_stop="94450" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94449" i_stop="93606" i_length="844">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93605" g_stop="93380" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="256" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93379" i_stop="93020" i_length="360">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93019" g_stop="92774" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="502" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92773" i_stop="91966" i_length="808">
            <donor d_prob="0.662" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91965" g_stop="91851" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="617" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E247644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94479" e_stop="94450"/>
          <exon e_start="93605" e_stop="93380"/>
          <exon e_start="93019" e_stop="92774"/>
          <exon e_start="91965" e_stop="91851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCTCGTTTGCTCTACCGTTACAACCTGTAAGTGCAACACTCCTTTATTTACCACCTTGTTGTAGATTTGTATGCAGACTGCAATACTTGTAATTCATTGCAAAACTACTCTTAATTACCGGTTGGGTTCACTGTCCCAAGCTCCTGAGCTTATTGAGCCACAACTTATTACACTGCTGGTCAATTCCCCCTTTTGGTATTTAAAAATTAAAAATTATGCAGAAGTGGAGAAGATCTTTACATACTCACCAATACAAATACTGCTTCAATCTCCAATACAACTCGAAGGGCCTTCTTTTCAGTTCCTAATAGAGGGCATAGCTCTGACAAAGAATCATGTCCTGTCCAGTTCTCTTGTCATGAATTCCCAGCAATAGACAAATCCTCCCCCCCAAAAAACAAACACACAATAGGCAAATTTCCTTAATACTAAAGGAATTTTAATTTTTCAATTATAAACTTGCGTTGCACCTCTCGATCTAAACAATTTCTTGAATTAACATTTTTTCTGGTTAGGATGACACTTCCTCAGATCACTTAAAATGCATTTCCCATTCAAGTTAGCCTCTTTTCCTTAGTCACGAGCTACCTGCTTTCCATCCCTTGTTAGTCCAGCATGCTTCTTCGTGCCAAGGAAGTAGGCATCTAGCGGTGAGATAGGGATCTGATTCTCGTTTTGAAAGAAATAAAATTATTGATAGAGGGATACAGGCTTTGCCTTTTATTATCCTTTATCACCACCGTTGGAAAGATTCTCTTGAGTTATTGACTGTGGAGCCAAGGGAAACCTGGAAATGTCATTTATTAACAATTCGTGTGCCAGAGAGATAGTCTAGATTACTATTTGATTAATGCCTTTTTAATTATTCAGCCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCATGGGAGAGGAGAAGGATGAAGGGAAAAGTTGCAGTTCAGAAAATGGTTGTGGATCTAATGGAGCTATACCTACACAGGTTAAAACAAAAAAGGCCTCCATACCCCAAGACTCCAGCTATGGCTGAATTTGCATCTCAGTTTCCTTTTGAACCCACACCGGATCAGAAACAGGTTTTTAATTGTCTATTCTGTATCATTTAAATTCTGATGTCCACCTGCATGGCTTTTTCCGCAAAATATCAGCTGTTGTTGGTTCCTTCCATGTGTATAGTTTAGCTGCAATTGTTGTTTTTCATCCAGTTGGTTCAGCAAGACATGTATGAAAATTTTAACAACCAAAAAAGTAACAGTGTTGTTGTCTTGCCACATTCTATTAAGAATAACTTATTGCTTCTCATTGTGCGTAAAGTGTAGTTATCTTGGCACATTTTAGTCAGAGTAACCTATTGCCTGAAAAGTTCAATCATTTTTACTACTTAACCTATAATGGAAAACTTTTCTGTTTCTTACAGTATTGAATTCCAATGACAGGCATTCTCAGATGTAGAAAGGGACTTGACAGAGAGTGAAAATCCAATGGACAGATTAATTTGCGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCCATCTTCTGTGTAGTCTCTGCAGGGAAGCAAGCTATGGTTCTAGCGCCAACAATAGTTTTAGCTAAGCAACATTTTGATGTTATCTCAGAGAGATTTTCAAGATATCCTAACATAAGAGTTGGACTTCTTAGCAGGTTTCAGGTGCATAACTTGATTTTTATCAATATGCTGCTGATGCCTAAGAAGCACTTTCTACTTGAATTCTACTCTTTATCATTTAAATTTTAGGTGGTTTTGTAAAAGAATGTGGTTGCTTCTGACCTTCAATGTTAAATATTTGCTCATAGTGTTTTCTTGCAAAACCTAACTTCTCACATCTCATGATTTCTTAAGATTAGCTTTCTTGACAATAGGTCCATGGCAAGAAAACATATCTTAAGTTCATCGGAGTGCCTTATAATAAGGGATTCTGTTGATGTACTTCCATGAAACTTAAGCTGACATAGACACGTTAAATCTTATGTCCATTGAGGATTTTATGCAGTTTGAGATTGTTTCACAAGTCATGCTTAATTGATTCTTTTTTTCTATAAGGGTAACTTGTATTCATATTAAAAAAAGACTTCAAACAGGTTCTTTGTTGATTGTTATTTATTTCGAACTCACATAAATTAAAAAAAAGTCACCTTGTTGAAATGGTTTAATATTATTTAATATATTTATATATACTTCTCTTAAATATTGTCTACCTCTTTGATTATTAAGAAGACCATTTAAATATGCAAGGAAGTGCACCAAACTAGAAATGATATCTTCTTCTCTTTCTTTTTAGTATTTTCCTTCCAAAATCTGAGTGATTATGGTTCCCAATATGAACTTCTTAAATATGTTATTTTAGTTTTAGTTCTTTGGTGTTGGCACTGTTGTTCACCTTGTCTAAGTAAACACCATATTTTTATTCGAAGTCCTAATTTTAGTTTTCTTTGCCACCGACTTTTGCTCACTCAAGACCAAGTCAGAGAAAGAGGAGTACTTGAGTATGATTAAAGACGGCCATGTGGACATTATTGTTGGGACTCATTCACTACTTGGCAATCGGGTTGAATATAATAATCTGGGTCTAC</genome_strand>
        <mrna_strand>GGCATCTCGTTTGCTCTACCGTTACAACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCATGGGAGAGGAGAAGGATGAAGGGAAAAGTTGCAGTTCAGAAAATGGTTGTGGATCTAATGGAGCTATACCTACACAGGTTAAAACAAAAAAGGCCTCCATACCCCAAGACTCCAGCTATGGCTGAATTTGCATCTCAGTTTCCTTTTGAACCCACACCGGATCAGAAACAG........................................................................................................................................................................................................................................................................................................................................................................GCATTCTCAGATGTAGAAAGGGACTTGACAGAGAGTGAAAATCCAATGGACAGATTAATTTGCGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCCATCTTCTGTGTAGTCTCTGCAGGGAAGCAAGCTATGGTTCTAGCGCCAACAATAGTTTTAGCTAAGCAACATTTTGATGTTATCTCAGAGAGATTTTCAAGATATCCTAACATAAGAGTTGGACTTCTTAGCAGGTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGTCAGAGAAAGAGGAGTACTTGAGTATGATTAAAGACGGCCATGTGGACATTATTGTTGGGACTCATTCACTACTTGGCAATCGGGTTGAATATAATAATCTGGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541886" ref_strand="+" ref_description="SGN-E541886 [TUS-62-O13]">
      <seq>ttccattgaagctctgctttgagaaattagaacaagtttgctcttacaagtttatccatccatggccgctgcaaaggcctccctcttcttctctccctcggagtgctttctcacaactcgtctctgcaaactcttctccactactcaaaaaccctcttttccctctccctcctcctcttctattaccttaaccaatgtcctcaatgccgatgctgtacataccaaattgcctccccgactacggaatgcaagacaggagcaagagcgagacgccatttctctactcaacgagcgaattcgccgggagcatgctaagagagatcactcccctcttagaccggccatggattccgaggaggctgataagtacattcagctcgtgaaagagcagcagcaaaggggccttcagaagctcaaaagcgacagagccagacaaggtgctccacatgatgcagctcaacctacctttagttacaaggtggacccttacactctccgttccggcgattacgtggtccacaggaaagttggaattggtcgattcgttggcatcaaatttgacgttccaaaggattccaaagagcctattgaatacgtctttattgagtacgctgacggtatggctaaattacccgtcaagcaggcatctcgtttgctctaccgttacaacctccctaatgaaacccaaaggccacggactttgagcaagttaagcgatactagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="95421" stop="93251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95121" g_stop="94450" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94449" i_stop="93606" i_length="844">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93605" g_stop="93551" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="727" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E541886" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95121" e_stop="94450"/>
          <exon e_start="93605" e_stop="93551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCCTTACACTCTCCGTTCCGGCGATTACGTGGTCCACAGGAAAGTTGGAATTGGTCGATTCGTTGGCATCAAATTTGACGTTCCAAAGGATTCCAAAGAGCCTATTGAATACGTCTTTATTGAGTACGCTGACGGTATGGCTAAATTACCCGTCAAGCAGGCATCTCGTTTGCTCTACCGTTACAACCTGTAAGTGCAACACTCCTTTATTTACCACCTTGTTGTAGATTTGTATGCAGACTGCAATACTTGTAATTCATTGCAAAACTACTCTTAATTACCGGTTGGGTTCACTGTCCCAAGCTCCTGAGCTTATTGAGCCACAACTTATTACACTGCTGGTCAATTCCCCCTTTTGGTATTTAAAAATTAAAAATTATGCAGAAGTGGAGAAGATCTTTACATACTCACCAATACAAATACTGCTTCAATCTCCAATACAACTCGAAGGGCCTTCTTTTCAGTTCCTAATAGAGGGCATAGCTCTGACAAAGAATCATGTCCTGTCCAGTTCTCTTGTCATGAATTCCCAGCAATAGACAAATCCTCCCCCCCAAAAAACAAACACACAATAGGCAAATTTCCTTAATACTAAAGGAATTTTAATTTTTCAATTATAAACTTGCGTTGCACCTCTCGATCTAAACAATTTCTTGAATTAACATTTTTTCTGGTTAGGATGACACTTCCTCAGATCACTTAAAATGCATTTCCCATTCAAGTTAGCCTCTTTTCCTTAGTCACGAGCTACCTGCTTTCCATCCCTTGTTAGTCCAGCATGCTTCTTCGTGCCAAGGAAGTAGGCATCTAGCGGTGAGATAGGGATCTGATTCTCGTTTTGAAAGAAATAAAATTATTGATAGAGGGATACAGGCTTTGCCTTTTATTATCCTTTATCACCACCGTTGGAAAGATTCTCTTGAGTTATTGACTGTGGAGCCAAGGGAAACCTGGAAATGTCATTTATTAACAATTCGTGTGCCAGAGAGATAGTCTAGATTACTATTTGATTAATGCCTTTTTAATTATTCAGCCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCA</genome_strand>
        <mrna_strand>TTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCCTTACACTCTCCGTTCCGGCGATTACGTGGTCCACAGGAAAGTTGGAATTGGTCGATTCGTTGGCATCAAATTTGACGTTCCAAAGGATTCCAAAGAGCCTATTGAATACGTCTTTATTGAGTACGCTGACGGTATGGCTAAATTACCCGTCAAGCAGGCATCTCGTTTGCTCTACCGTTACAACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAATGAAACCCAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548624" ref_strand="+" ref_description="SGN-E548624 [TUS-62-O17]">
      <seq>ttccattgaagctctgctttgagaaattagaacaagtttgctcttacaagtttatccatccatggccgctgcaaaggcctccctcttcttctctccctcggagtgctttctcacaactcgtctctgcaaactcttctccactactcaaaaaccctcttttccctctccctcctcctcttctattaccttaaccaatgtcctcaatgccgatgctgtacataccaaattgcctccccgactacggaatgcaagacaggagcaagagcgagacgccatttctctactcaacgagcgaattcgccgggagcatgctaagagagatcactcccctcttagaccggccatggattccgaggaggctgataagtacattcagctcgtgaaagagcagcagcaaaggggccttcagaagctcaaaagcgacagagccagacaaggtgctccacatgatgcagctcaacctacctttagttacaaggtggaccctttacaactctccgttccggcgattacgtggtccacaggaaagttggaattgggcgattcgttggcatcaaatttgacgttccaaaggattccaaagagcctattgaatacgtctttatttgagtacgctgacggtatggctaaattacccgtcaagcaggcatctcgtttgctctaccgttacaacctccctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="95421" stop="94150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95121" g_stop="94450" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E548624" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95121" e_stop="94450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCC-TTAC-ACTCTCCGTTCCGGCGATTACGTGGTCCACAGGAAAGTTGGAATTGGTCGATTCGTTGGCATCAAATTTGACGTTCCAAAGGATTCCAAAGAGCCTATTGAATACGTCTTTA-TTGAGTACGCTGACGGTATGGCTAAATTACCCGTCAAGCAGGCATCTCGTTTGCTCTACCGTTACAACCT</genome_strand>
        <mrna_strand>TTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCCTTTACAACTCTCCGTTCCGGCGATTACGTGGTCCACAGGAAAGTTGGAATTGGGCGATTCGTTGGCATCAAATTTGACGTTCCAAAGGATTCCAAAGAGCCTATTGAATACGTCTTTATTTGAGTACGCTGACGGTATGGCTAAATTACCCGTCAAGCAGGCATCTCGTTTGCTCTACCGTTACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300838" ref_strand="+" ref_description="SGN-E300838 [cLEW-8-B21]">
      <seq>tccattgaagctctgctttgagaaattagaacaagtttgctcttacaagtttatccatccatggccgctgcaaaggcctccctcttcttctctccctcggagtgctttctcacaactcgtctctgcaaactcttctccactactcaaaaaccctcttttccctctccctcctcctcttctattaccttaaccaatgtcctcaatgccgatgctgtacataccaaattgcctccccgactacggaatgcaagacaggagcaagagcgagacgccatttctctactcaacgagcgaattcgccgggagcatgctaagagagatcactcccctcttagaccggccatggattccgaggaggctgataagtacattcagctcgtgaaagagcagcagcaaaggggccttcagaagctcaaaagcgacagagccagacaaggtgctccacatgatgcaactcaacctacctttagttacaaggtggacccttacactctccgttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="95420" stop="94319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95120" g_stop="94619" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E300838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95120" e_stop="94619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCCTTACACTCTCCGTTCCG</genome_strand>
        <mrna_strand>TCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAACTCAACCTACCTTTAGTTACAAGGTGGACCCTTACACTCTCCGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367331" ref_strand="+" ref_description="SGN-E367331 [cLPT-7-C15]">
      <seq>tttcgagggaatagataatgtggcaaacccgacgttccattgaagctctgctttgagaaattagaacaagtcttgctcttacaagtttatccatccatggccgctgcaaaggcctccctcttcttctctccctcggagtgctttctcacaactcgtctctgcaaactcttctccactactcaaaaaccctcttttccctctccctcctcctcttctattaccttaaccaatgtcctcaatgccgatgctgtatataccaaattgcctccccgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="-" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="95455" stop="94583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95155" g_stop="94883" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="-" ref_id="SGN-E367331" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95155" e_stop="94883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAGGGAATAGATAATGTGGCAAACCCGACGTTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGT-TTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGAC</genome_strand>
        <mrna_strand>TTTCGAGGGAATAGATAATGTGGCAAACCCGACGTTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTCTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTATATACCAAATTGCCTCCCCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374520" ref_strand="+" ref_description="SGN-E374520 [TUS-38-J14]">
      <seq>atgtggacaagaaaattagttggagtagcggggaatgatatactttacaacccacaaaagagttgctgtttgaaaaacacttaattttttttaaaaaagggaaaaacactttcagagtctatatttaaattttgttgagctgcagaaggactaattatctgtcggcgccaggttgctttctgtcggcatcaatggcgatgattatgagaataagaaatcccttccttccttgtctattaaattaataaattaaactaacatcagcgattaagtttcagtcgttaatgtgggagggaatcaaatgccaatgaagtctcgaatccattcatcagcttcaatgtgtcaaaatatatatcccaacctttgcagctgaagtgctcgtggtcgccaaatgtcaaggactcttgcagcaattgtaggaggtgctgcaggagccgtggcattggtggggattctgcttctcatttgttgcttctgtatttttcgtaaaaggtttatttcaacaacttccgacacaggatcttctgatccatctgttcaagttggaaaaaatgctggggttgaattgacctcacaagatgccagacgcttccacatagaagaattgtctttggccacaaaaggttttagtgataagagtttaattggccaaggcaaattttgggaagtgtacaagggattgcttcatgattgtatgcttgtagcaataaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0032J10-OH2MM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0032J10.4" temp_strand="+" temp_description="C02HBa0032J10.4  AC215366.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0032J10 sequenced_by:kribb upload_account_name:korea">
        <position start="99612" stop="101153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99912" g_stop="100243" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100244" i_stop="100394" i_length="151">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100395" g_stop="100604" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="542" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100605" i_stop="100683" i_length="79">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100684" g_stop="100854" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="713" r_length="171" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0032J10.4" gen_strand="+" ref_id="SGN-E374520" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0032J10.4" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99912" e_stop="100243"/>
          <exon e_start="100395" e_stop="100604"/>
          <exon e_start="100684" e_stop="100854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGACAAGAAAATTAGTTGGAGTAGCGGGGAATGATATACTTTACAACCCACAAAAGAGTTGCTGTTTGAAAAACACTTAATTTTTTTTAAAAAAGGGAAAAACACTTTCAGAGTCTATATTTAAATTTTGTTGAGCTGCAGAAGGACTAATTATCTGTCGGCGCCAGGTTGCTTTCTGTCGGCATCAATGGCGATGATTATGAGAATAAGAAATCCCTTCCTTCCTTGTCTATTAAATTAATAAATTAAACTAACATCAGCGATTAAGTTTCAGTCGTTAATGTGGGAGGGAATCAAATGCCAATGAAGTCTCGAATCCATTCATCAGGTTCACTTCTCTTATTCTTAGTATCGTTATCTTCTATGTGCTGTGCCCTAACTATTTTATCGCAGATATGCTACTTTTAGTGAGTGTCTTTGTTGCTTTAGGTTTTATCACAATGTTAATATTAGGATTAATTCCCTCTTTCATATTTCAGCTTCAATGTGTCAAAATATATATCCCAACCTTTGCAGCTGAAGTGCTCGTGGTCGCCAAATGTCAAGGACTCTTGCAGCAATTGTAGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATTCTGCTTCTCATTTGTTGCTTCTGTATTTTTCGTAAAAGGTTTATTTCAACAACTTCCGACACAGGATCTTCTGATCCATCTGTTCAAGGTCATATCTCACTTCTTATTAAGTCAACAAATGTCGTATTTATTCTCCCAAATTCTCAAGTAATCCGAATCACTTGCAGTTGGAAAAAATGCTGGGGTTGAATTGACCTCACAAGATGCCAGACGCTTCCACATAGAAGAATTGTCTTTGGCCACAAAAGGTTTTAGTGATAAGAGTTTAATTGGCCAAGGCAAATTTGGGGAGGTGTACAAGGGATTGCTTCATGATGGTATGCTTGTAGCAATAAAAA</genome_strand>
        <mrna_strand>ATGTGGACAAGAAAATTAGTTGGAGTAGCGGGGAATGATATACTTTACAACCCACAAAAGAGTTGCTGTTTGAAAAACACTTAATTTTTTTTAAAAAAGGGAAAAACACTTTCAGAGTCTATATTTAAATTTTGTTGAGCTGCAGAAGGACTAATTATCTGTCGGCGCCAGGTTGCTTTCTGTCGGCATCAATGGCGATGATTATGAGAATAAGAAATCCCTTCCTTCCTTGTCTATTAAATTAATAAATTAAACTAACATCAGCGATTAAGTTTCAGTCGTTAATGTGGGAGGGAATCAAATGCCAATGAAGTCTCGAATCCATTCATCAG.......................................................................................................................................................CTTCAATGTGTCAAAATATATATCCCAACCTTTGCAGCTGAAGTGCTCGTGGTCGCCAAATGTCAAGGACTCTTGCAGCAATTGTAGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATTCTGCTTCTCATTTGTTGCTTCTGTATTTTTCGTAAAAGGTTTATTTCAACAACTTCCGACACAGGATCTTCTGATCCATCTGTTCAAG...............................................................................TTGGAAAAAATGCTGGGGTTGAATTGACCTCACAAGATGCCAGACGCTTCCACATAGAAGAATTGTCTTTGGCCACAAAAGGTTTTAGTGATAAGAGTTTAATTGGCCAAGGCAAATTTTGGGAAGTGTACAAGGGATTGCTTCATGATTGTATGCTTGTAGCAATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2309" PGL_stop="4571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2309" e_stop="2529"/>
            <exon e_start="3956" e_stop="4054"/>
            <exon e_start="4141" e_stop="4349"/>
            <exon e_start="4497" e_stop="4571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.968"/>
          <exon-intron don_prob="0.969" acc_prob="0.977" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="2309" e_stop="2529" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2530" i_stop="3955" i_length="1426"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="3956" e_stop="4054" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.977">
            <gDNA_intron_boundary i_start="4055" i_stop="4140" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="4141" e_stop="4349" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4350" i_stop="4496" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4497" e_stop="4571" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2309" stop="2529"/>
              <exon start="3956" stop="4054"/>
              <exon start="4141" stop="4349"/>
              <exon start="4497" stop="4571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2309" stop="2529"/>
              <exon start="3956" stop="4054"/>
              <exon start="4141" stop="4334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATGGAGCTGCAAACGAAGGTCGCGCAAGCTGTTCACGTGCTAAATCACGATAGCCAATCGTGCAACCGTGTTGCTGCTAATCAATGGTTAGTACAGTTTCAACAGACAGATGTTGCTTGGGAAGTAGCCACGTCCATCCTGACATCCAATTATCACCAGCAATTTGCTTGTGACTTTGAAGTCGAATTTTTTGCCGCTCAGATTCTCAAGCGAAAG : ATACAAAATGAAGGAAGCTACTTGCAAATGGGAGCAAAAGATGCTCTGCTAAATGCTCTTCTGTTGGCTGCTAAGAGATTTAGTTTAGGCCCTCCACTG : CTGTTGACTCAAATTTGTCTTGCTCTCTCTGCACTCATGCTTCATGCTGTAGAGCATGGAAAACCAATTGAGAAGCTCTTTTGCAGTCTCCAAAGTTTGGAAAACCATGATGAAGGCAACATCGCTGTCTTGGAAATGCTCACAGTCCTTCCAGAAGTTGTGGAGGATGAGAATACTGAGTACAGAGCTAGTTCGGCTCAGCGACGCGA : CTTCTCTCACATACTTCAGTGGTTCTTGAGTTCCTTCATCGTCAGAGTGATATGAGTTTTAACAGTAGCATTCAA</gDNA_template>
            <first_frame> K  K  W  S  C  K  R  R  S  R  K  L  F  T  C  *  I  T  I  A  N  R  A  T  V  L  L  L  I  N  G  *  Y  S  F  N  R  Q  M  L  L  G  K  *  P  R  P  S  *  H  P  I  I  T  S  N  L  L  V  T  L  K  S  N  F  L  P  L  R  F  S  S  E  R :   Y  K  M  K  E  A  T  C  K  W  E  Q  K  M  L  C  *  M  L  F  C  W  L  L  R  D  L  V  *  A  L  H  C :   C  *  L  K  F  V  L  L  S  L  H  S  C  F  M  L  *  S  M  E  N  Q  L  R  S  S  F  A  V  S  K  V  W  K  T  M  M  K  A  T  S  L  S  W  K  C  S  Q  S  F  Q  K  L  W  R  M  R  I  L  S  T  E  L  V  R  L  S  D  A   : T  S  L  T  Y  F  S  G  S  *  V  P  S  S  S  E  *  Y  E  F  *  Q  *  H  S  </first_frame>
            <second_frame>  K  N  G  A  A  N  E  G  R  A  S  C  S  R  A  K  S  R  *  P  I  V  Q  P  C  C  C  *  S  M  V  S  T  V  S  T  D  R  C  C  L  G  S  S  H  V  H  P  D  I  Q  L  S  P  A  I  C  L  *  L  *  S  R  I  F  C  R  S  D  S  Q  A  K   : D  T  K  *  R  K  L  L  A  N  G  S  K  R  C  S  A  K  C  S  S  V  G  C  *  E  I  *  F  R  P  S  T   : A  V  D  S  N  L  S  C  S  L  C  T  H  A  S  C  C  R  A  W  K  T  N  *  E  A  L  L  Q  S  P  K  F  G  K  P  *  *  R  Q  H  R  C  L  G  N  A  H  S  P  S  R  S  C  G  G  *  E  Y  *  V  Q  S  *  F  G  S  A  T  R  :  L  L  S  H  T  S  V  V  L  E  F  L  H  R  Q  S  D  M  S  F  N  S  S  I  Q </second_frame>
            <third_frame>   K  M  E  L  Q  T  K  V  A  Q  A  V  H  V  L  N  H  D  S  Q  S  C  N  R  V  A  A  N  Q  W  L  V  Q  F  Q  Q  T  D  V  A  W  E  V  A  T  S  I  L  T  S  N  Y  H  Q  Q  F  A  C  D  F  E  V  E  F  F  A  A  Q  I  L  K  R  K  :  I  Q  N  E  G  S  Y  L  Q  M  G  A  K  D  A  L  L  N  A  L  L  L  A  A  K  R  F  S  L  G  P  P  L  :  L  L  T  Q  I  C  L  A  L  S  A  L  M  L  H  A  V  E  H  G  K  P  I  E  K  L  F  C  S  L  Q  S  L  E  N  H  D  E  G  N  I  A  V  L  E  M  L  T  V  L  P  E  V  V  E  D  E  N  T  E  Y  R  A  S  S  A  Q  R  R  D :   F  S  H  I  L  Q  W  F  L  S  S  F  I  V  R  V  I  *  V  L  T  V  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2311" stop="2529"/>
                    <exon start="3956" stop="4054"/>
                    <exon start="4141" stop="4349"/>
                    <exon start="4497" stop="4551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMELQTKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDVAWEVATSILTSNYHQQFACDFEVEFFAAQILKRKIQNEGSYLQMGAKDALLNALLLAAKRFSLGPPLLLTQICLALSALMLHAVEHGKPIEKLFCSLQSLENHDEGNIAVLEMLTVLPEVVEDENTEYRASSAQRRDFSHILQWFLSSFIVRVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14719" PGL_stop="14430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14719" e_stop="14430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="14719" e_stop="14430" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14719" stop="14430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAGCTAGTATATGGTGGACAGTGTGGAAAGAAAGGAATCAAATATGTTTTAAGGGCAAGAAGAACAATTTGCAGAATTTCAAGATGAATTGTACAGCTCTTTATTATTTTTGGTGTAAACAGAAAGTTTTAGTACAGGCAGAAGAACTTTTTGACGTTATAGACTATTTGTGACAAAAAGCACAGATGGAGTCAGTCTAGTTTATAATACTTTTGGAAGGGAGGCTACTTTGATGTAGTATACCTGTGGACAAATAGGGAAAAAAAAGTTATCACTCTCAAAAAAAAA</gDNA_template>
            <first_frame> P  S  *  Y  M  V  D  S  V  E  R  K  E  S  N  M  F  *  G  Q  E  E  Q  F  A  E  F  Q  D  E  L  Y  S  S  L  L  F  L  V  *  T  E  S  F  S  T  G  R  R  T  F  *  R  Y  R  L  F  V  T  K  S  T  D  G  V  S  L  V  Y  N  T  F  G  R  E  A  T  L  M  *  Y  T  C  G  Q  I  G  K  K  K  L  S  L  S  K  K   </first_frame>
            <second_frame>  P  A  S  I  W  W  T  V  W  K  E  R  N  Q  I  C  F  K  G  K  K  N  N  L  Q  N  F  K  M  N  C  T  A  L  Y  Y  F  W  C  K  Q  K  V  L  V  Q  A  E  E  L  F  D  V  I  D  Y  L  *  Q  K  A  Q  M  E  S  V  *  F  I  I  L  L  E  G  R  L  L  *  C  S  I  P  V  D  K  *  G  K  K  S  Y  H  S  Q  K  K  </second_frame>
            <third_frame>   Q  L  V  Y  G  G  Q  C  G  K  K  G  I  K  Y  V  L  R  A  R  R  T  I  C  R  I  S  R  *  I  V  Q  L  F  I  I  F  G  V  N  R  K  F  *  Y  R  Q  K  N  F  L  T  L  *  T  I  C  D  K  K  H  R  W  S  Q  S  S  L  *  Y  F  W  K  G  G  Y  F  D  V  V  Y  L  W  T  N  R  E  K  K  V  I  T  L  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0032J10.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18167" PGL_stop="18678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18167" e_stop="18678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="18167" e_stop="18678" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18167" stop="18677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18174" stop="18677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18178" stop="18677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18195" stop="18677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18495" stop="18678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18503" stop="18678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18517" stop="18678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATATTGCAGTATTATCAAAGGGAATTATTTTATTAATAATTGGAGACATACATTCATAGATATAATTTCTAACTAAAAATAGAAAAATATGCTTCTCACTTATCAGCAAAATTTAAATAACAAATAAAAGAACTAACTCCTAAATTCAACTCACACAGGACTCCAATAAAATAATTTAAAAATCCTAAAATAGCTAATTGATATATTTTTGCAATATCCTGAGACATATTCTCTTGATTTGGGCCACAGTGAGATTATTTGGCAGCGGATTGATTTCATAATCCTCTTCCACGGCTTCCCAAAGATTAAGAACCTCTAAGTAAGTTTCCATTCTCACATCCCATAGTTGATAATTCTCACCATCAAAAATAGGAGGAACCATTAGCGAAAAACTATTTTCGGAATCTATTTTTCTACTCAAAGAAAAAATACTGCCGTATTATCAAAGGGAATTATTTTATTAATAATTCAGAGACATACCTGTCTCAAAAAAAAAATAAAAAAAA</gDNA_template>
            <first_frame> E  K  I  L  Q  Y  Y  Q  R  E  L  F  Y  *  *  L  E  T  Y  I  H  R  Y  N  F  *  L  K  I  E  K  Y  A  S  H  L  S  A  K  F  K  *  Q  I  K  E  L  T  P  K  F  N  S  H  R  T  P  I  K  *  F  K  N  P  K  I  A  N  *  Y  I  F  A  I  S  *  D  I  F  S  *  F  G  P  Q  *  D  Y  L  A  A  D  *  F  H  N  P  L  P  R  L  P  K  D  *  E  P  L  S  K  F  P  F  S  H  P  I  V  D  N  S  H  H  Q  K  *  E  E  P  L  A  K  N  Y  F  R  N  L  F  F  Y  S  K  K  K  Y  C  R  I  I  K  G  N  Y  F  I  N  N  S  E  T  Y  L  S  Q  K  K  N  K  K   </first_frame>
            <second_frame>  K  K  Y  C  S  I  I  K  G  N  Y  F  I  N  N  W  R  H  T  F  I  D  I  I  S  N  *  K  *  K  N  M  L  L  T  Y  Q  Q  N  L  N  N  K  *  K  N  *  L  L  N  S  T  H  T  G  L  Q  *  N  N  L  K  I  L  K  *  L  I  D  I  F  L  Q  Y  P  E  T  Y  S  L  D  L  G  H  S  E  I  I  W  Q  R  I  D  F  I  I  L  F  H  G  F  P  K  I  K  N  L  *  V  S  F  H  S  H  I  P  *  L  I  I  L  T  I  K  N  R  R  N  H  *  R  K  T  I  F  G  I  Y  F  S  T  Q  R  K  N  T  A  V  L  S  K  G  I  I  L  L  I  I  Q  R  H  T  C  L  K  K  K  I  K  K  </second_frame>
            <third_frame>   K  N  I  A  V  L  S  K  G  I  I  L  L  I  I  G  D  I  H  S  *  I  *  F  L  T  K  N  R  K  I  C  F  S  L  I  S  K  I  *  I  T  N  K  R  T  N  S  *  I  Q  L  T  Q  D  S  N  K  I  I  *  K  S  *  N  S  *  L  I  Y  F  C  N  I  L  R  H  I  L  L  I  W  A  T  V  R  L  F  G  S  G  L  I  S  *  S  S  S  T  A  S  Q  R  L  R  T  S  K  *  V  S  I  L  T  S  H  S  *  *  F  S  P  S  K  I  G  G  T  I  S  E  K  L  F  S  E  S  I  F  L  L  K  E  K  I  L  P  Y  Y  Q  R  E  L  F  Y  *  *  F  R  D  I  P  V  S  K  K  K  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0032J10.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="67932" PGL_stop="68162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67932" e_stop="68162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="67932" e_stop="68162" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67932" stop="68162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCAGAATCATTCTTCTCAAGGAGTCTCAACTTCTTAGAGAATTTGTGCATTTTTTGTACCAATGTACATTGTACAGTATCCCCAATTTTGTAATATAGAAATCAGTCTTGAAATACACAACATATCAACGAGGCACTGATGGCCCATTTATGCCAATTGGTTAGTAGGGCAAAAGAATCATCAAAAGAGAAATAAAACGGAGGATATTGATTATTCTAACAAATCTTA</gDNA_template>
            <first_frame> N  A  E  S  F  F  S  R  S  L  N  F  L  E  N  L  C  I  F  C  T  N  V  H  C  T  V  S  P  I  L  *  Y  R  N  Q  S  *  N  T  Q  H  I  N  E  A  L  M  A  H  L  C  Q  L  V  S  R  A  K  E  S  S  K  E  K  *  N  G  G  Y  *  L  F  *  Q  I  L </first_frame>
            <second_frame>  M  Q  N  H  S  S  Q  G  V  S  T  S  *  R  I  C  A  F  F  V  P  M  Y  I  V  Q  Y  P  Q  F  C  N  I  E  I  S  L  E  I  H  N  I  S  T  R  H  *  W  P  I  Y  A  N  W  L  V  G  Q  K  N  H  Q  K  R  N  K  T  E  D  I  D  Y  S  N  K  S   </second_frame>
            <third_frame>   C  R  I  I  L  L  K  E  S  Q  L  L  R  E  F  V  H  F  L  Y  Q  C  T  L  Y  S  I  P  N  F  V  I  *  K  S  V  L  K  Y  T  T  Y  Q  R  G  T  D  G  P  F  M  P  I  G  *  *  G  K  R  I  I  K  R  E  I  K  R  R  I  L  I  I  L  T  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0032J10.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="68704" PGL_stop="69374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68704" e_stop="69374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="68704" e_stop="69374" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68704" stop="69374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68705" stop="69365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCAACCCCCATACCCATACACCAATGGTTATGGTTATCTTCTTCACCCACCATTCTAATAATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCTCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAATTGTCGGGTTAAAGATGGAACTGTACAGGGAAAGGAAGGAAGGGTCGCCATTAATGGAGTTAGAGGAAATGTGTGTTTTGTTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAAGTTTTACTCTTTTTTTTTTTTTTTTACTTTAAAATAATTTTTTATTTTTTTTCTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAAAGCATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTAATTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATAAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTATAATTAAATAT</gDNA_template>
            <first_frame> P  T  P  T  P  I  P  I  H  Q  W  L  W  L  S  S  S  P  T  I  L  I  I  S  K  F  L  V  S  V  V  I  F  F  P  H  H  S  N  G  F  K  I  L  S  I  L  F  H  L  *  I  F  R  R  D  F  F  A  H  L  S  L  P  K  K  R  D  E  V  K  S  Y  N  *  *  K  S  *  *  K  K  N  C  R  V  K  D  G  T  V  Q  G  K  E  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  S  S  *  R  Q  G  S  G  C  L  S  F  T  L  F  F  F  F  L  L  *  N  N  F  L  F  F  F  F  I  I  *  C  L  N  N  F  L  D  *  K  I  K  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  *  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  V  *  L  R  C  L  N  K  *  S  G  Q  V  *  V  A  A  Y  D  F  G  L  *  L  N   </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  N  G  Y  G  Y  L  L  H  P  P  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  L  T  I  L  M  V  S  K  F  L  A  F  C  F  I  Y  K  F  F  E  E  I  F  L  P  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  I  N  K  K  A  D  E  K  K  I  V  G  L  K  M  E  L  Y  R  E  R  K  E  G  S  P  L  M  E  L  E  E  M  C  V  L  F  P  V  E  G  R  E  V  G  V  *  V  L  L  F  F  F  F  F  Y  F  K  I  I  F  Y  F  F  S  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  S  M  S  L  F  N  W  S  N  *  H  V  S  A  S  V  F  H  T  S  S  N  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  I  N  N  R  D  K  F  E  W  P  H  M  T  L  A  Y  N  *  I  </second_frame>
            <third_frame>   H  P  N  P  H  T  H  T  P  M  V  M  V  I  F  F  T  H  H  S  N  N  F  K  I  L  S  I  S  G  Y  L  L  P  S  P  F  *  W  F  Q  N  S  *  H  F  V  S  F  I  N  F  S  K  R  F  F  C  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  L  S  G  *  R  W  N  C  T  G  K  G  R  K  G  R  H  *  W  S  *  R  K  C  V  F  C  F  Q  L  K  A  G  K  W  V  F  K  F  Y  S  F  F  F  F  F  T  L  K  *  F  F  I  F  F  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  K  A  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  P  L  I  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  Q  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L  W  P  I  I  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0032J10.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="95155" PGL_stop="76519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95155" e_stop="94450"/>
            <exon e_start="93605" e_stop="93380"/>
            <exon e_start="93019" e_stop="92774"/>
            <exon e_start="91965" e_stop="91831"/>
            <exon e_start="90858" e_stop="90709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.662" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95155" e_stop="94450" e_length="706"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94449" i_stop="93606" i_length="844"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93605" e_stop="93380" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="93379" i_stop="93020" i_length="360"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93019" e_stop="92774" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.662" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92773" i_stop="91966" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91965" e_stop="91831" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.877">
            <gDNA_intron_boundary i_start="91830" i_stop="90859" i_length="972"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="90858" e_stop="90709" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95155" stop="94883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95121" stop="94450"/>
              <exon start="93605" stop="93551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95121" stop="94450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95120" stop="94619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94479" stop="94450"/>
              <exon start="93605" stop="93380"/>
              <exon start="93019" stop="92774"/>
              <exon start="91965" stop="91851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93605" stop="93380"/>
              <exon start="93019" stop="92774"/>
              <exon start="91965" stop="91831"/>
              <exon start="90858" stop="90709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGAGGGAATAGATAATGTGGCAAACCCGACGTTCCATTGAAGCTCTGCTTTGAGAAATTAGAACAAGTTTGCTCTTACAAGTTTATCCATCCATGGCCGCTGCAAAGGCCTCCCTCTTCTTCTCTCCCTCGGAGTGCTTTCTCACAACTCGTCTCTGCAAACTCTTCTCCACTACTCAAAAACCCTCTTTTCCCTCTCCCTCCTCCTCTTCTATTACCTTAACCAATGTCCTCAATGCCGATGCTGTACATACCAAATTGCCTCCCCGACTACGGAATGCAAGACAGGAGCAAGAGCGAGACGCCATTTCTCTACTCAACGAGCGAATTCGCCGGGAGCATGCTAAGAGAGATCACTCCCCTCTTAGACCGGCCATGGATTCCGAGGAGGCTGATAAGTACATTCAGCTCGTGAAAGAGCAGCAGCAAAGGGGCCTTCAGAAGCTCAAAAGCGACAGAGCCAGACAAGGTGCTCCACATGATGCAGCTCAACCTACCTTTAGTTACAAGGTGGACCCTTACACTCTCCGTTCCGGCGATTACGTGGTCCACAGGAAAGTTGGAATTGGTCGATTCGTTGGCATCAAATTTGACGTTCCAAAGGATTCCAAAGAGCCTATTGAATACGTCTTTATTGAGTACGCTGACGGTATGGCTAAATTACCCGTCAAGCAGGCATCTCGTTTGCTCTACCGTTACAACCT : CCCTAATGAAACCAAAAGGCCACGGACTTTGAGCAAGTTAAGCGATACTAGTGCATGGGAGAGGAGAAGGATGAAGGGAAAAGTTGCAGTTCAGAAAATGGTTGTGGATCTAATGGAGCTATACCTACACAGGTTAAAACAAAAAAGGCCTCCATACCCCAAGACTCCAGCTATGGCTGAATTTGCATCTCAGTTTCCTTTTGAACCCACACCGGATCAGAAACAG : GCATTCTCAGATGTAGAAAGGGACTTGACAGAGAGTGAAAATCCAATGGACAGATTAATTTGCGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCCATCTTCTGTGTAGTCTCTGCAGGGAAGCAAGCTATGGTTCTAGCGCCAACAATAGTTTTAGCTAAGCAACATTTTGATGTTATCTCAGAGAGATTTTCAAGATATCCTAACATAAGAGTTGGACTTCTTAGCAGGTTTCAG : ACCAAGTCAGAGAAAGAGGAGTACTTGAGTATGATTAAAGACGGCCATGTGGACATTATTGTTGGGACTCATTCACTACTTGGCAATCGGGTTGAATATAATAATCTGGGTCTACTTGTGGTTGATGAGGAACAG : AGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTTAAAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAGGTAATACCACCGAGTTTGTTTCAAT</gDNA_template>
            <first_frame> F  R  G  N  R  *  C  G  K  P  D  V  P  L  K  L  C  F  E  K  L  E  Q  V  C  S  Y  K  F  I  H  P  W  P  L  Q  R  P  P  S  S  S  L  P  R  S  A  F  S  Q  L  V  S  A  N  S  S  P  L  L  K  N  P  L  F  P  L  P  P  P  L  L  L  P  *  P  M  S  S  M  P  M  L  Y  I  P  N  C  L  P  D  Y  G  M  Q  D  R  S  K  S  E  T  P  F  L  Y  S  T  S  E  F  A  G  S  M  L  R  E  I  T  P  L  L  D  R  P  W  I  P  R  R  L  I  S  T  F  S  S  *  K  S  S  S  K  G  A  F  R  S  S  K  A  T  E  P  D  K  V  L  H  M  M  Q  L  N  L  P  L  V  T  R  W  T  L  T  L  S  V  P  A  I  T  W  S  T  G  K  L  E  L  V  D  S  L  A  S  N  L  T  F  Q  R  I  P  K  S  L  L  N  T  S  L  L  S  T  L  T  V  W  L  N  Y  P  S  S  R  H  L  V  C  S  T  V  T  T   : S  L  M  K  P  K  G  H  G  L  *  A  S  *  A  I  L  V  H  G  R  G  E  G  *  R  E  K  L  Q  F  R  K  W  L  W  I  *  W  S  Y  T  Y  T  G  *  N  K  K  G  L  H  T  P  R  L  Q  L  W  L  N  L  H  L  S  F  L  L  N  P  H  R  I  R  N  R :   H  S  Q  M  *  K  G  T  *  Q  R  V  K  I  Q  W  T  D  *  F  A  E  M  L  V  L  V  K  L  R  L  H  C  V  P  S  S  V  *  S  L  Q  G  S  K  L  W  F  *  R  Q  Q  *  F  *  L  S  N  I  L  M  L  S  Q  R  D  F  Q  D  I  L  T  *  E  L  D  F  L  A  G  F  R :   P  S  Q  R  K  R  S  T  *  V  *  L  K  T  A  M  W  T  L  L  L  G  L  I  H  Y  L  A  I  G  L  N  I  I  I  W  V  Y  L  W  L  M  R  N  R :   G  L  V  *  N  R  R  R  G  L  L  H  L  K  L  Q  W  M  Y  S  H  F  Q  Q  R  L  F  R  E  L  Y  I  *  H  *  L  D  F  V  T  L  G  N  T  T  E  F  V  S   </first_frame>
            <second_frame>  F  E  G  I  D  N  V  A  N  P  T  F  H  *  S  S  A  L  R  N  *  N  K  F  A  L  T  S  L  S  I  H  G  R  C  K  G  L  P  L  L  L  S  L  G  V  L  S  H  N  S  S  L  Q  T  L  L  H  Y  S  K  T  L  F  S  L  S  L  L  L  F  Y  Y  L  N  Q  C  P  Q  C  R  C  C  T  Y  Q  I  A  S  P  T  T  E  C  K  T  G  A  R  A  R  R  H  F  S  T  Q  R  A  N  S  P  G  A  C  *  E  R  S  L  P  S  *  T  G  H  G  F  R  G  G  *  *  V  H  S  A  R  E  R  A  A  A  K  G  P  S  E  A  Q  K  R  Q  S  Q  T  R  C  S  T  *  C  S  S  T  Y  L  *  L  Q  G  G  P  L  H  S  P  F  R  R  L  R  G  P  Q  E  S  W  N  W  S  I  R  W  H  Q  I  *  R  S  K  G  F  Q  R  A  Y  *  I  R  L  Y  *  V  R  *  R  Y  G  *  I  T  R  Q  A  G  I  S  F  A  L  P  L  Q  P  :  P  *  *  N  Q  K  A  T  D  F  E  Q  V  K  R  Y  *  C  M  G  E  E  K  D  E  G  K  S  C  S  S  E  N  G  C  G  S  N  G  A  I  P  T  Q  V  K  T  K  K  A  S  I  P  Q  D  S  S  Y  G  *  I  C  I  S  V  S  F  *  T  H  T  G  S  E  T   : G  I  L  R  C  R  K  G  L  D  R  E  *  K  S  N  G  Q  I  N  L  R  R  C  W  F  W  *  N  *  G  C  T  A  C  H  L  L  C  S  L  C  R  E  A  S  Y  G  S  S  A  N  N  S  F  S  *  A  T  F  *  C  Y  L  R  E  I  F  K  I  S  *  H  K  S  W  T  S  *  Q  V  S   : D  Q  V  R  E  R  G  V  L  E  Y  D  *  R  R  P  C  G  H  Y  C  W  D  S  F  T  T  W  Q  S  G  *  I  *  *  S  G  S  T  C  G  *  *  G  T   : E  V  W  C  K  T  E  G  E  D  C  F  I  *  N  F  S  G  C  T  H  T  F  S  N  A  Y  S  E  N  S  I  F  S  I  N  W  I  S  *  R  *  V  I  P  P  S  L  F  Q  </second_frame>
            <third_frame>   S  R  E  *  I  M  W  Q  T  R  R  S  I  E  A  L  L  *  E  I  R  T  S  L  L  L  Q  V  Y  P  S  M  A  A  A  K  A  S  L  F  F  S  P  S  E  C  F  L  T  T  R  L  C  K  L  F  S  T  T  Q  K  P  S  F  P  S  P  S  S  S  S  I  T  L  T  N  V  L  N  A  D  A  V  H  T  K  L  P  P  R  L  R  N  A  R  Q  E  Q  E  R  D  A  I  S  L  L  N  E  R  I  R  R  E  H  A  K  R  D  H  S  P  L  R  P  A  M  D  S  E  E  A  D  K  Y  I  Q  L  V  K  E  Q  Q  Q  R  G  L  Q  K  L  K  S  D  R  A  R  Q  G  A  P  H  D  A  A  Q  P  T  F  S  Y  K  V  D  P  Y  T  L  R  S  G  D  Y  V  V  H  R  K  V  G  I  G  R  F  V  G  I  K  F  D  V  P  K  D  S  K  E  P  I  E  Y  V  F  I  E  Y  A  D  G  M  A  K  L  P  V  K  Q  A  S  R  L  L  Y  R  Y  N  L :   P  N  E  T  K  R  P  R  T  L  S  K  L  S  D  T  S  A  W  E  R  R  R  M  K  G  K  V  A  V  Q  K  M  V  V  D  L  M  E  L  Y  L  H  R  L  K  Q  K  R  P  P  Y  P  K  T  P  A  M  A  E  F  A  S  Q  F  P  F  E  P  T  P  D  Q  K  Q  :  A  F  S  D  V  E  R  D  L  T  E  S  E  N  P  M  D  R  L  I  C  G  D  V  G  F  G  K  T  E  V  A  L  R  A  I  F  C  V  V  S  A  G  K  Q  A  M  V  L  A  P  T  I  V  L  A  K  Q  H  F  D  V  I  S  E  R  F  S  R  Y  P  N  I  R  V  G  L  L  S  R  F  Q  :  T  K  S  E  K  E  E  Y  L  S  M  I  K  D  G  H  V  D  I  I  V  G  T  H  S  L  L  G  N  R  V  E  Y  N  N  L  G  L  L  V  V  D  E  E  Q  :  R  F  G  V  K  Q  K  E  R  I  A  S  F  K  T  S  V  D  V  L  T  L  S  A  T  P  I  P  R  T  L  Y  L  A  L  T  G  F  R  D  A  R  *  Y  H  R  V  C  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95099" stop="94450"/>
                    <exon start="93605" stop="93380"/>
                    <exon start="93019" stop="92774"/>
                    <exon start="91965" stop="91831"/>
                    <exon start="90858" stop="90730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1383</number_coding_nucleotides>
                  <number_encoded_amino_acids>461</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRTSLLLQVYPSMAAAKASLFFSPSECFLTTRLCKLFSTTQKPSFPSPSSSSITLTNVLNADAVHTKLPPRLRNARQEQERDAISLLNERIRREHAKRDHSPLRPAMDSEEADKYIQLVKEQQQRGLQKLKSDRARQGAPHDAAQPTFSYKVDPYTLRSGDYVVHRKVGIGRFVGIKFDVPKDSKEPIEYVFIEYADGMAKLPVKQASRLLYRYNLPNETKRPRTLSKLSDTSAWERRRMKGKVAVQKMVVDLMELYLHRLKQKRPPYPKTPAMAEFASQFPFEPTPDQKQAFSDVERDLTESENPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVISERFSRYPNIRVGLLSRFQTKSEKEEYLSMIKDGHVDIIVGTHSLLGNRVEYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90858" e_stop="90734"/>
            <exon e_start="90498" e_stop="90359"/>
            <exon e_start="90222" e_stop="90152"/>
            <exon e_start="88294" e_stop="88133"/>
            <exon e_start="81347" e_stop="81261"/>
            <exon e_start="81036" e_stop="80863"/>
            <exon e_start="80674" e_stop="80630"/>
            <exon e_start="78691" e_stop="78335"/>
            <exon e_start="78185" e_stop="77803"/>
            <exon e_start="77684" e_stop="77366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.814" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.232" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90858" e_stop="90734" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90733" i_stop="90499" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90498" e_stop="90359" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90358" i_stop="90223" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90222" e_stop="90152" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="0.983">
            <gDNA_intron_boundary i_start="90151" i_stop="88295" i_length="1857"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88294" e_stop="88133" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="88132" i_stop="81348" i_length="6785"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81347" e_stop="81261" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.814" acc_prob="0.904">
            <gDNA_intron_boundary i_start="81260" i_stop="81037" i_length="224"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80863" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80862" i_stop="80675" i_length="188"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80674" e_stop="80630" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.232">
            <gDNA_intron_boundary i_start="80629" i_stop="78692" i_length="1938"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="78691" e_stop="78335" e_length="357"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78334" i_stop="78186" i_length="149"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78185" e_stop="77803" e_length="383"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77802" i_stop="77685" i_length="118"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="77684" e_stop="77366" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90858" stop="90734"/>
              <exon start="90498" stop="90359"/>
              <exon start="90222" stop="90152"/>
              <exon start="88294" stop="88133"/>
              <exon start="81347" stop="81261"/>
              <exon start="81036" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81334" stop="81261"/>
              <exon start="81036" stop="80863"/>
              <exon start="80674" stop="80630"/>
              <exon start="78691" stop="78383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81334" stop="81261"/>
              <exon start="81036" stop="80863"/>
              <exon start="80674" stop="80630"/>
              <exon start="78691" stop="78455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78566" stop="78335"/>
              <exon start="78185" stop="77846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78154" stop="77803"/>
              <exon start="77684" stop="77445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78145" stop="77803"/>
              <exon start="77684" stop="77366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTTGGTGTAAAACAGAAGGAGAGGATTGCTTCATTTAAAACTTCAGTGGATGTACTCACACTTTCAGCAACGCCTATTCCGAGAACTCTATATTTAGCATTAACTGGATTTCGTGACGCTAG : TTTGATCTCAACACCGCCTCCTGAGAGAGTTCCAATAAGAACACATCTTTCAGCTTACAGTAAGGACAAAGTAATATCAGCTATCAAGCATGAATTGGACCGTGGTGGTCGAGTTTTTTATGTCTTGCCCCGCATTAAAG : GTCTTGAGGATGTTATGGAATTCTTAGAACTGGCATTTCCACATGTTGAAATAGCTATTGCTCATGGAAAG : CAATACTCAAAACAGCTTGAGGAAACTATGGAAAGATTTGCACGGGGAGACATTAGAATTCTTATATGTACAAATATAGTAGAAAGTGGCCTTGATATTCAAAACGCAAACACAATCATCATTCAAGATGTTCAGCAATTTGGACTTGCACAATTGTATCAG : TTGCGTGGAAGGGTCGGACGGGCGGATAAGGAAGCTCATGCACATTTATTCTATCCTGACAAATCACTTCTTTCAGACCATGCACTA : GAGAGACTTGCTGCTCTTGAAGAGTGCTGTGAACTTGGTCAAGGTTTTCAGCTTGCAGAAAGAGACATGGCTATTAGAGGATTTGGCAATATTTTTGGTGAGCAACAGACGGGGGATGTCGGCAATGTGGGCATTGATCTATTCTTTGAGATGTTGTTTGAAAGCTTGTCTAAG : GTTGATGAGCATCGTGTAATATCAGTTCCTTACCCTGCAATGGAG : CTTGATATCAATATAAACCCTCATCTTCCTTCTGAGTACATAAACCATTTGGAGAACCCCATGCAAATCATCAATAGCGCTGAAAAAGCAGCTGAAAAGGACATTTTCAACCTGATGCAATTTACGGAAAATCTGAGGCGTCAGTATGGCAAAGAACCTTACTCTATGGAAATCCTATTGAAAAAGCTTTATGTCAGAAGAATGGCAGCAGATTTAGGAATTACCAGCATTTATGCTTCAGGAAAGATGGTTGGCATGAAAACAAACATGTCAAAAAAGGTTTTCAAGTTGATAACGGATTCAGCAACTTCAGATATTCATCAAAATTCTCTGATATTTGAAGATGGCCAAATAAAG : GCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAG : GATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATTATCCGCGTGAAGCGCTAGAATTTAATATCATAAAATTTATAAATAATACTTAAAATTTGTCAGTCATTAATAATGTA</gDNA_template>
            <first_frame> R  F  G  V  K  Q  K  E  R  I  A  S  F  K  T  S  V  D  V  L  T  L  S  A  T  P  I  P  R  T  L  Y  L  A  L  T  G  F  R  D  A  S :   L  I  S  T  P  P  P  E  R  V  P  I  R  T  H  L  S  A  Y  S  K  D  K  V  I  S  A  I  K  H  E  L  D  R  G  G  R  V  F  Y  V  L  P  R  I  K   : G  L  E  D  V  M  E  F  L  E  L  A  F  P  H  V  E  I  A  I  A  H  G  K  :  Q  Y  S  K  Q  L  E  E  T  M  E  R  F  A  R  G  D  I  R  I  L  I  C  T  N  I  V  E  S  G  L  D  I  Q  N  A  N  T  I  I  I  Q  D  V  Q  Q  F  G  L  A  Q  L  Y  Q  :  L  R  G  R  V  G  R  A  D  K  E  A  H  A  H  L  F  Y  P  D  K  S  L  L  S  D  H  A  L  :  E  R  L  A  A  L  E  E  C  C  E  L  G  Q  G  F  Q  L  A  E  R  D  M  A  I  R  G  F  G  N  I  F  G  E  Q  Q  T  G  D  V  G  N  V  G  I  D  L  F  F  E  M  L  F  E  S  L  S  K  :  V  D  E  H  R  V  I  S  V  P  Y  P  A  M  E  :  L  D  I  N  I  N  P  H  L  P  S  E  Y  I  N  H  L  E  N  P  M  Q  I  I  N  S  A  E  K  A  A  E  K  D  I  F  N  L  M  Q  F  T  E  N  L  R  R  Q  Y  G  K  E  P  Y  S  M  E  I  L  L  K  K  L  Y  V  R  R  M  A  A  D  L  G  I  T  S  I  Y  A  S  G  K  M  V  G  M  K  T  N  M  S  K  K  V  F  K  L  I  T  D  S  A  T  S  D  I  H  Q  N  S  L  I  F  E  D  G  Q  I  K  :  A  E  L  L  L  E  L  P  K  E  Q  L  L  N  W  I  F  Q  C  L  A  E  L  Y  S  S  L  P  T  L  I  K  Y  *  S  F  Q  *  T  V  I  L  T  S  S  S  R  Q  P  H  G  P  L  P  I  A  I  I  G  Y  W  G  V  L  *  L  R  A  L  E  A  C  L  S  S  A  A  V  P  T  C  T  V  *  K  L  E  I  D  L  Y  H  I  F  K  L  I  V  L  T  N  W  H  F  P  F  L  A  G  S  Q  S  I  S  E  V  K  A  T  M  S  A  L  P  S  E  M  R :   I  N  R  V  V  Y  I  *  D  I  G  Y  I  D  G  Q  K  K  V  R  I  L  N  R  G  R  A  Q  I  I  F  C  L  S  C  S  L  D  P  L  A  P  F  S  L  C  Y  *  I  D  V  L  F  V  T  F  S  F  F  *  I  M  T  L  Q  G  I  C  V  T  Y  L  F  I  Q  K  N  *  *  N  Y  P  R  E  A  L  E  F  N  I  I  K  F  I  N  N  T  *  N  L  S  V  I  N  N  V </first_frame>
            <second_frame>  G  L  V  *  N  R  R  R  G  L  L  H  L  K  L  Q  W  M  Y  S  H  F  Q  Q  R  L  F  R  E  L  Y  I  *  H  *  L  D  F  V  T  L   : V  *  S  Q  H  R  L  L  R  E  F  Q  *  E  H  I  F  Q  L  T  V  R  T  K  *  Y  Q  L  S  S  M  N  W  T  V  V  V  E  F  F  M  S  C  P  A  L  K  :  V  L  R  M  L  W  N  S  *  N  W  H  F  H  M  L  K  *  L  L  L  M  E  S :   N  T  Q  N  S  L  R  K  L  W  K  D  L  H  G  E  T  L  E  F  L  Y  V  Q  I  *  *  K  V  A  L  I  F  K  T  Q  T  Q  S  S  F  K  M  F  S  N  L  D  L  H  N  C  I  S :   C  V  E  G  S  D  G  R  I  R  K  L  M  H  I  Y  S  I  L  T  N  H  F  F  Q  T  M  H  * :   R  D  L  L  L  L  K  S  A  V  N  L  V  K  V  F  S  L  Q  K  E  T  W  L  L  E  D  L  A  I  F  L  V  S  N  R  R  G  M  S  A  M  W  A  L  I  Y  S  L  R  C  C  L  K  A  C  L  R :   L  M  S  I  V  *  Y  Q  F  L  T  L  Q  W  S :   L  I  S  I  *  T  L  I  F  L  L  S  T  *  T  I  W  R  T  P  C  K  S  S  I  A  L  K  K  Q  L  K  R  T  F  S  T  *  C  N  L  R  K  I  *  G  V  S  M  A  K  N  L  T  L  W  K  S  Y  *  K  S  F  M  S  E  E  W  Q  Q  I  *  E  L  P  A  F  M  L  Q  E  R  W  L  A  *  K  Q  T  C  Q  K  R  F  S  S  *  *  R  I  Q  Q  L  Q  I  F  I  K  I  L  *  Y  L  K  M  A  K  *  R :   L  N  C  S  W  S  Y  L  K  N  S  C  *  I  G  S  S  N  A  S  Q  N  Y  I  L  H  C  R  P  *  *  N  I  S  P  F  N  E  L  *  F  L  H  H  L  V  G  S  P  T  V  H  C  P  S  L  *  *  G  T  G  E  C  F  N  *  E  R  *  K  L  V  S  H  Q  Q  L  S  P  H  V  Q  Y  E  N  L  R  *  I  C  I  I  Y  S  S  *  L  C  *  P  T  G  T  F  H  S  S  R  A  V  N  L  Y  Q  K  *  K  P  R  *  V  H  C  L  L  R  *   : G  L  T  E  L  F  T  Y  R  I  *  D  I  L  M  D  K  K  K  L  G  S  *  I  G  E  E  H  R  S  Y  F  V  F  H  V  P  W  T  H  W  L  L  S  L  Y  V  I  R  *  M  Y  S  S  *  H  F  L  S  S  E  L  *  R  F  K  E  F  V  L  H  I  Y  L  F  K  K  T  S  K  I  I  R  V  K  R  *  N  L  I  S  *  N  L  *  I  I  L  K  I  C  Q  S  L  I  M   </second_frame>
            <third_frame>   V  W  C  K  T  E  G  E  D  C  F  I  *  N  F  S  G  C  T  H  T  F  S  N  A  Y  S  E  N  S  I  F  S  I  N  W  I  S  *  R  *  :  F  D  L  N  T  A  S  *  E  S  S  N  K  N  T  S  F  S  L  Q  *  G  Q  S  N  I  S  Y  Q  A  *  I  G  P  W  W  S  S  F  L  C  L  A  P  H  *  R :   S  *  G  C  Y  G  I  L  R  T  G  I  S  T  C  *  N  S  Y  C  S  W  K   : A  I  L  K  T  A  *  G  N  Y  G  K  I  C  T  G  R  H  *  N  S  Y  M  Y  K  Y  S  R  K  W  P  *  Y  S  K  R  K  H  N  H  H  S  R  C  S  A  I  W  T  C  T  I  V  S   : V  A  W  K  G  R  T  G  G  *  G  S  S  C  T  F  I  L  S  *  Q  I  T  S  F  R  P  C  T   : R  E  T  C  C  S  *  R  V  L  *  T  W  S  R  F  S  A  C  R  K  R  H  G  Y  *  R  I  W  Q  Y  F  W  *  A  T  D  G  G  C  R  Q  C  G  H  *  S  I  L  *  D  V  V  *  K  L  V  *   : G  *  *  A  S  C  N  I  S  S  L  P  C  N  G   : A  *  Y  Q  Y  K  P  S  S  S  F  *  V  H  K  P  F  G  E  P  H  A  N  H  Q  *  R  *  K  S  S  *  K  G  H  F  Q  P  D  A  I  Y  G  K  S  E  A  S  V  W  Q  R  T  L  L  Y  G  N  P  I  E  K  A  L  C  Q  K  N  G  S  R  F  R  N  Y  Q  H  L  C  F  R  K  D  G  W  H  E  N  K  H  V  K  K  G  F  Q  V  D  N  G  F  S  N  F  R  Y  S  S  K  F  S  D  I  *  R  W  P  N  K   : G  *  T  A  L  G  A  T  *  R  T  V  A  E  L  D  L  P  M  P  R  R  I  I  F  F  I  A  D  L  D  K  I  L  V  L  S  M  N  C  D  S  Y  I  I  *  *  A  A  P  R  S  I  A  H  R  Y  N  R  V  L  G  S  A  L  I  K  S  V  R  S  L  S  L  I  S  S  C  P  H  M  Y  S  M  K  T  *  D  R  S  V  S  Y  I  Q  A  D  C  V  N  Q  L  A  L  S  I  P  R  G  Q  S  I  Y  I  R  S  K  S  H  D  E  C  I  A  F  *  D  E  :  D  *  Q  S  C  L  H  I  G  Y  R  I  Y  *  W  T  K  K  S  *  D  P  E  *  G  K  S  T  D  H  I  L  S  F  M  F  P  G  P  I  G  S  F  L  F  M  L  L  D  R  C  T  L  R  D  I  F  F  L  L  N  Y  D  A  S  R  N  L  C  Y  I  F  I  Y  S  K  K  L  V  K  L  S  A  *  S  A  R  I  *  Y  H  K  I  Y  K  *  Y  L  K  F  V  S  H  *  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90858" stop="90734"/>
                    <exon start="90498" stop="90359"/>
                    <exon start="90222" stop="90152"/>
                    <exon start="88294" stop="88133"/>
                    <exon start="81347" stop="81261"/>
                    <exon start="81036" stop="80863"/>
                    <exon start="80674" stop="80630"/>
                    <exon start="78691" stop="78335"/>
                    <exon start="78185" stop="78084"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIRTHLSAYSKDKVISAIKHELDRGGRVFYVLPRIKGLEDVMEFLELAFPHVEIAIAHGKQYSKQLEETMERFARGDIRILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAHLFYPDKSLLSDHALERLAALEECCELGQGFQLAERDMAIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVDEHRVISVPYPAMELDININPHLPSEYINHLENPMQIINSAEKAAEKDIFNLMQFTENLRRQYGKEPYSMEILLKKLYVRRMAADLGITSIYASGKMVGMKTNMSKKVFKLITDSATSDIHQNSLIFEDGQIKAELLLELPKEQLLNWIFQCLAELYSSLPTLIKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78291" e_stop="77803"/>
            <exon e_start="77684" e_stop="77443"/>
            <exon e_start="76555" e_stop="76519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.514"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78291" e_stop="77803" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77802" i_stop="77685" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77684" e_stop="77443" e_length="242"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.934">
            <gDNA_intron_boundary i_start="77442" i_stop="76556" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="0.514">
            <gDNA_exon_boundary e_start="76555" e_stop="76519" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78291" stop="77803"/>
              <exon start="77684" stop="77443"/>
              <exon start="76555" stop="76519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78154" stop="77803"/>
              <exon start="77684" stop="77445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCACTAAGGTTGCATAATCTTCATTTGAAAGAAAGGGGAAAAAATAATGTGTAAGACATGTTTTTCCATATTTAAGTGGCTGTGTAATGATGTGTCTTGTTCAGGCTGAACTGCTCTTGGAGCTACCTAAAGAACAGTTGCTGAATTGGATCTTCCAATGCCTCGCAGAATTATATTCTTCATTGCCGACCTTGATAAAATATTAGTCCTTTCAATGAACTGTGATTCTTACATCATCTAGTAGGCAGCCCCACGGTCCATTGCCCATCGCTATAATAGGGTACTGGGGAGTGCTTTAATTAAGAGCGTTAGAAGCTTGTCTCTCATCAGCAGCTGTCCCCACATGTACAGTATGAAAACTTGAGATAGATCTGTATCATATATTCAAGCTGATTGTGTTAACCAACTGGCACTTTCCATTCCTCGCGGGCAGTCAATCTATATCAGAAGTAAAAGCCACGATGAGTGCATTGCCTTCTGAGATGAG : GATTAACAGAGTTGTTTACATATAGGATATAGGATATATTGATGGACAAAAAAAAGTTAGGATCCTGAATAGGGGAAGAGCACAGATCATATTTTGTCTTTCATGTTCCCTGGACCCATTGGCTCCTTTCTCTTTATGTTATTAGATAGATGTACTCTTCGTGACATTTTCTTTCTTCTGAATTATGACGCTTCAAGGAATTTGTGTTACATATTTATTTATTCAAAAAAACTAGTAAAATT : AGAAAAAGATAGAAATTCTTAACTTGAAAAAGGAAGA</gDNA_template>
            <first_frame> M  H  *  G  C  I  I  F  I  *  K  K  G  E  K  I  M  C  K  T  C  F  S  I  F  K  W  L  C  N  D  V  S  C  S  G  *  T  A  L  G  A  T  *  R  T  V  A  E  L  D  L  P  M  P  R  R  I  I  F  F  I  A  D  L  D  K  I  L  V  L  S  M  N  C  D  S  Y  I  I  *  *  A  A  P  R  S  I  A  H  R  Y  N  R  V  L  G  S  A  L  I  K  S  V  R  S  L  S  L  I  S  S  C  P  H  M  Y  S  M  K  T  *  D  R  S  V  S  Y  I  Q  A  D  C  V  N  Q  L  A  L  S  I  P  R  G  Q  S  I  Y  I  R  S  K  S  H  D  E  C  I  A  F  *  D  E  :  D  *  Q  S  C  L  H  I  G  Y  R  I  Y  *  W  T  K  K  S  *  D  P  E  *  G  K  S  T  D  H  I  L  S  F  M  F  P  G  P  I  G  S  F  L  F  M  L  L  D  R  C  T  L  R  D  I  F  F  L  L  N  Y  D  A  S  R  N  L  C  Y  I  F  I  Y  S  K  K  L  V  K  L :   E  K  D  R  N  S  *  L  E  K  G  R </first_frame>
            <second_frame>  C  T  K  V  A  *  S  S  F  E  R  K  G  K  K  *  C  V  R  H  V  F  P  Y  L  S  G  C  V  M  M  C  L  V  Q  A  E  L  L  L  E  L  P  K  E  Q  L  L  N  W  I  F  Q  C  L  A  E  L  Y  S  S  L  P  T  L  I  K  Y  *  S  F  Q  *  T  V  I  L  T  S  S  S  R  Q  P  H  G  P  L  P  I  A  I  I  G  Y  W  G  V  L  *  L  R  A  L  E  A  C  L  S  S  A  A  V  P  T  C  T  V  *  K  L  E  I  D  L  Y  H  I  F  K  L  I  V  L  T  N  W  H  F  P  F  L  A  G  S  Q  S  I  S  E  V  K  A  T  M  S  A  L  P  S  E  M  R :   I  N  R  V  V  Y  I  *  D  I  G  Y  I  D  G  Q  K  K  V  R  I  L  N  R  G  R  A  Q  I  I  F  C  L  S  C  S  L  D  P  L  A  P  F  S  L  C  Y  *  I  D  V  L  F  V  T  F  S  F  F  *  I  M  T  L  Q  G  I  C  V  T  Y  L  F  I  Q  K  N  *  *  N   : *  K  K  I  E  I  L  N  L  K  K  E   </second_frame>
            <third_frame>   A  L  R  L  H  N  L  H  L  K  E  R  G  K  N  N  V  *  D  M  F  F  H  I  *  V  A  V  *  *  C  V  L  F  R  L  N  C  S  W  S  Y  L  K  N  S  C  *  I  G  S  S  N  A  S  Q  N  Y  I  L  H  C  R  P  *  *  N  I  S  P  F  N  E  L  *  F  L  H  H  L  V  G  S  P  T  V  H  C  P  S  L  *  *  G  T  G  E  C  F  N  *  E  R  *  K  L  V  S  H  Q  Q  L  S  P  H  V  Q  Y  E  N  L  R  *  I  C  I  I  Y  S  S  *  L  C  *  P  T  G  T  F  H  S  S  R  A  V  N  L  Y  Q  K  *  K  P  R  *  V  H  C  L  L  R  *   : G  L  T  E  L  F  T  Y  R  I  *  D  I  L  M  D  K  K  K  L  G  S  *  I  G  E  E  H  R  S  Y  F  V  F  H  V  P  W  T  H  W  L  L  S  L  Y  V  I  R  *  M  Y  S  S  *  H  F  L  S  S  E  L  *  R  F  K  E  F  V  L  H  I  Y  L  F  K  K  T  S  K  I  :  R  K  R  *  K  F  L  T  *  K  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0032J10.4"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="82770" e_stop="82127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="82770" e_stop="82127" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82770" stop="82127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGCTTATGCTCAAGGAACTCAATGATTGACAAATGGCCATGGAAGCATATATGGAAGACAAAATTACCTACCAAAGTGATCTGTTTCAGTTGGACTGCACTACATAACTCATGCCTCACACATGATAATCTCTCCAAAAGGAAATTCCAGCTTGCTAACCGATGCTATTTATGCCACAAGCACACAGAAAGTGTCAACCACTTGCTACTACACTGCCCAGCTGCCTCACACCTATGGAATATGTTTTGTTGTTTTTCTGGCCTTTCTTGGGTCATGTTTTTCTCTGTTACGGATACTCTTGAAAGTTGGAATTCACGGGATGTTGACAAAGCCACCAAGAGTATGTCGATGATGATCCCTGGTGTTATCTTCTGGTGTTTATGGACAGAGAGGAACAAAAAATGTTTCGATGGAATTTCAACTTCTAGAGATCTCTGGCGAGGAAGATGTCTAGTTAGCCTTTTTAGTTGGTCCAAACTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGCTCAGGAAGAGGCTACAAATCCTTTTTTGTGAGCTTAAATGATCTATCCTTCTAAAGCTTGCATCTTCTTGATGCCTTGAAATGAATCTACTTACTTCATCAAAAAAAAAAA</gDNA_template>
            <first_frame> H  S  L  C  S  R  N  S  M  I  D  K  W  P  W  K  H  I  W  K  T  K  L  P  T  K  V  I  C  F  S  W  T  A  L  H  N  S  C  L  T  H  D  N  L  S  K  R  K  F  Q  L  A  N  R  C  Y  L  C  H  K  H  T  E  S  V  N  H  L  L  L  H  C  P  A  A  S  H  L  W  N  M  F  C  C  F  S  G  L  S  W  V  M  F  F  S  V  T  D  T  L  E  S  W  N  S  R  D  V  D  K  A  T  K  S  M  S  M  M  I  P  G  V  I  F  W  C  L  W  T  E  R  N  K  K  C  F  D  G  I  S  T  S  R  D  L  W  R  G  R  C  L  V  S  L  F  S  W  S  K  L  T  P  V  N  N  L  E  L  F  L  D  F  V  S  S  I  A  Q  E  E  A  T  N  P  F  L  *  A  *  M  I  Y  P  S  K  A  C  I  F  L  M  P  *  N  E  S  T  Y  F  I  K  K  K   </first_frame>
            <second_frame>  T  A  Y  A  Q  G  T  Q  *  L  T  N  G  H  G  S  I  Y  G  R  Q  N  Y  L  P  K  *  S  V  S  V  G  L  H  Y  I  T  H  A  S  H  M  I  I  S  P  K  G  N  S  S  L  L  T  D  A  I  Y  A  T  S  T  Q  K  V  S  T  T  C  Y  Y  T  A  Q  L  P  H  T  Y  G  I  C  F  V  V  F  L  A  F  L  G  S  C  F  S  L  L  R  I  L  L  K  V  G  I  H  G  M  L  T  K  P  P  R  V  C  R  *  *  S  L  V  L  S  S  G  V  Y  G  Q  R  G  T  K  N  V  S  M  E  F  Q  L  L  E  I  S  G  E  E  D  V  *  L  A  F  L  V  G  P  N  *  P  L  *  I  I  *  N  S  S  W  I  L  L  A  L  *  L  R  K  R  L  Q  I  L  F  C  E  L  K  *  S  I  L  L  K  L  A  S  S  *  C  L  E  M  N  L  L  T  S  S  K  K  K  </second_frame>
            <third_frame>   Q  L  M  L  K  E  L  N  D  *  Q  M  A  M  E  A  Y  M  E  D  K  I  T  Y  Q  S  D  L  F  Q  L  D  C  T  T  *  L  M  P  H  T  *  *  S  L  Q  K  E  I  P  A  C  *  P  M  L  F  M  P  Q  A  H  R  K  C  Q  P  L  A  T  T  L  P  S  C  L  T  P  M  E  Y  V  L  L  F  F  W  P  F  L  G  H  V  F  L  C  Y  G  Y  S  *  K  L  E  F  T  G  C  *  Q  S  H  Q  E  Y  V  D  D  D  P  W  C  Y  L  L  V  F  M  D  R  E  E  Q  K  M  F  R  W  N  F  N  F  *  R  S  L  A  R  K  M  S  S  *  P  F  *  L  V  Q  T  D  P  C  K  *  F  R  T  L  L  G  F  C  *  L  Y  S  S  G  R  G  Y  K  S  F  F  V  S  L  N  D  L  S  F  *  S  L  H  L  L  D  A  L  K  *  I  Y  L  L  H  Q  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82770" stop="82207"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSLCSRNSMIDKWPWKHIWKTKLPTKVICFSWTALHNSCLTHDNLSKRKFQLANRCYLCHKHTESVNHLLLHCPAASHLWNMFCCFSGLSWVMFFSVTDTLESWNSRDVDKATKSMSMMIPGVIFWCLWTERNKKCFDGISTSRDLWRGRCLVSLFSWSKLTPVNNLELFLDFVSSIAQEEATNPFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="82123" PGL_stop="82757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82123" e_stop="82757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="82123" e_stop="82757" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82123" stop="82757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTTTTTTTTTTGATGAAGTAAGTAGATTCATTTCAAGGCATCAAGAAGATGCAAGCTTTAGAAGGATAGATCATTTAAGCTCACAAAAAAGGATTTGTAGCCTCTTCCTGAGCTATAGAGCTAACAAAATCCAAGAAGAGTTCTAAATTATTTACAGGGGTCAGTTTGGACCAACTAAAAAGGCTAACTAGACATCTTCCTCGCCAGAGATCTCTAGAAGTTGAAATTCCATCGAAACATTTTTTGTTCCTCTCTGTCCATAAACACCAGAAGATAACACCAGGGATCATCATCGACATACTCTTGGTGGCTTTGTCAACATCCCGTGAATTCCAACTTTCAAGAGTATCCGTAACAGAGAAAAACATGACCCAAGAAAGGCCAGAAAAACAACAAAACATATTCCATAGGTGTGAGGCAGCTGGGCAGTGTAGTAGCAAGTGGTTGACACTTTCTGTGTGCTTGTGGCATAAATAGCATCGGTTAGCAAGCTGGAATTTCCTTTTGGAGAGATTATCATGTGTGAGGCATGAGTTATGTAGTGCAGTCCAACTGAAACAGATCACTTTGGTAGGTAATTTTGTCTTCCATATATGCTTCCATGGCCATTTGTCAATCATTGAGTTCCTTG</gDNA_template>
            <first_frame> V  F  F  F  F  D  E  V  S  R  F  I  S  R  H  Q  E  D  A  S  F  R  R  I  D  H  L  S  S  Q  K  R  I  C  S  L  F  L  S  Y  R  A  N  K  I  Q  E  E  F  *  I  I  Y  R  G  Q  F  G  P  T  K  K  A  N  *  T  S  S  S  P  E  I  S  R  S  *  N  S  I  E  T  F  F  V  P  L  C  P  *  T  P  E  D  N  T  R  D  H  H  R  H  T  L  G  G  F  V  N  I  P  *  I  P  T  F  K  S  I  R  N  R  E  K  H  D  P  R  K  A  R  K  T  T  K  H  I  P  *  V  *  G  S  W  A  V  *  *  Q  V  V  D  T  F  C  V  L  V  A  *  I  A  S  V  S  K  L  E  F  P  F  G  E  I  I  M  C  E  A  *  V  M  *  C  S  P  T  E  T  D  H  F  G  R  *  F  C  L  P  Y  M  L  P  W  P  F  V  N  H  *  V  P   </first_frame>
            <second_frame>  Y  F  F  F  L  M  K  *  V  D  S  F  Q  G  I  K  K  M  Q  A  L  E  G  *  I  I  *  A  H  K  K  G  F  V  A  S  S  *  A  I  E  L  T  K  S  K  K  S  S  K  L  F  T  G  V  S  L  D  Q  L  K  R  L  T  R  H  L  P  R  Q  R  S  L  E  V  E  I  P  S  K  H  F  L  F  L  S  V  H  K  H  Q  K  I  T  P  G  I  I  I  D  I  L  L  V  A  L  S  T  S  R  E  F  Q  L  S  R  V  S  V  T  E  K  N  M  T  Q  E  R  P  E  K  Q  Q  N  I  F  H  R  C  E  A  A  G  Q  C  S  S  K  W  L  T  L  S  V  C  L  W  H  K  *  H  R  L  A  S  W  N  F  L  L  E  R  L  S  C  V  R  H  E  L  C  S  A  V  Q  L  K  Q  I  T  L  V  G  N  F  V  F  H  I  C  F  H  G  H  L  S  I  I  E  F  L  </second_frame>
            <third_frame>   I  F  F  F  *  *  S  K  *  I  H  F  K  A  S  R  R  C  K  L  *  K  D  R  S  F  K  L  T  K  K  D  L  *  P  L  P  E  L  *  S  *  Q  N  P  R  R  V  L  N  Y  L  Q  G  S  V  W  T  N  *  K  G  *  L  D  I  F  L  A  R  D  L  *  K  L  K  F  H  R  N  I  F  C  S  S  L  S  I  N  T  R  R  *  H  Q  G  S  S  S  T  Y  S  W  W  L  C  Q  H  P  V  N  S  N  F  Q  E  Y  P  *  Q  R  K  T  *  P  K  K  G  Q  K  N  N  K  T  Y  S  I  G  V  R  Q  L  G  S  V  V  A  S  G  *  H  F  L  C  A  C  G  I  N  S  I  G  *  Q  A  G  I  S  F  W  R  D  Y  H  V  *  G  M  S  Y  V  V  Q  S  N  *  N  R  S  L  W  *  V  I  L  S  S  I  Y  A  S  M  A  I  C  Q  S  L  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82238" stop="82603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIELTKSKKSSKLFTGVSLDQLKRLTRHLPRQRSLEVEIPSKHFLFLSVHKHQKITPGIIIDILLVALSTSREFQLSRVSVTEKNMTQERPEKQQNIFHRCEAAGQCSSKWLTLSVCLWHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="99912" PGL_stop="100854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99912" e_stop="100243"/>
            <exon e_start="100395" e_stop="100604"/>
            <exon e_start="100684" e_stop="100854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.780" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99912" e_stop="100243" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.780">
            <gDNA_intron_boundary i_start="100244" i_stop="100394" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100395" e_stop="100604" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.880">
            <gDNA_intron_boundary i_start="100605" i_stop="100683" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="100684" e_stop="100854" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99912" stop="100243"/>
              <exon start="100395" stop="100604"/>
              <exon start="100684" stop="100854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGGACAAGAAAATTAGTTGGAGTAGCGGGGAATGATATACTTTACAACCCACAAAAGAGTTGCTGTTTGAAAAACACTTAATTTTTTTTAAAAAAGGGAAAAACACTTTCAGAGTCTATATTTAAATTTTGTTGAGCTGCAGAAGGACTAATTATCTGTCGGCGCCAGGTTGCTTTCTGTCGGCATCAATGGCGATGATTATGAGAATAAGAAATCCCTTCCTTCCTTGTCTATTAAATTAATAAATTAAACTAACATCAGCGATTAAGTTTCAGTCGTTAATGTGGGAGGGAATCAAATGCCAATGAAGTCTCGAATCCATTCATCAG : CTTCAATGTGTCAAAATATATATCCCAACCTTTGCAGCTGAAGTGCTCGTGGTCGCCAAATGTCAAGGACTCTTGCAGCAATTGTAGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATTCTGCTTCTCATTTGTTGCTTCTGTATTTTTCGTAAAAGGTTTATTTCAACAACTTCCGACACAGGATCTTCTGATCCATCTGTTCAAG : TTGGAAAAAATGCTGGGGTTGAATTGACCTCACAAGATGCCAGACGCTTCCACATAGAAGAATTGTCTTTGGCCACAAAAGGTTTTAGTGATAAGAGTTTAATTGGCCAAGGCAAATTTGGGGAGGTGTACAAGGGATTGCTTCATGATGGTATGCTTGTAGCAATAAAAA</gDNA_template>
            <first_frame> M  W  T  R  K  L  V  G  V  A  G  N  D  I  L  Y  N  P  Q  K  S  C  C  L  K  N  T  *  F  F  L  K  K  G  K  T  L  S  E  S  I  F  K  F  C  *  A  A  E  G  L  I  I  C  R  R  Q  V  A  F  C  R  H  Q  W  R  *  L  *  E  *  E  I  P  S  F  L  V  Y  *  I  N  K  L  N  *  H  Q  R  L  S  F  S  R  *  C  G  R  E  S  N  A  N  E  V  S  N  P  F  I  S :   F  N  V  S  K  Y  I  S  Q  P  L  Q  L  K  C  S  W  S  P  N  V  K  D  S  C  S  N  C  R  R  C  C  R  S  R  G  I  G  G  D  S  A  S  H  L  L  L  L  Y  F  S  *  K  V  Y  F  N  N  F  R  H  R  I  F  *  S  I  C  S  S :   W  K  K  C  W  G  *  I  D  L  T  R  C  Q  T  L  P  H  R  R  I  V  F  G  H  K  R  F  *  *  *  E  F  N  W  P  R  Q  I  W  G  G  V  Q  G  I  A  S  *  W  Y  A  C  S  N  K   </first_frame>
            <second_frame>  C  G  Q  E  N  *  L  E  *  R  G  M  I  Y  F  T  T  H  K  R  V  A  V  *  K  T  L  N  F  F  *  K  R  E  K  H  F  Q  S  L  Y  L  N  F  V  E  L  Q  K  D  *  L  S  V  G  A  R  L  L  S  V  G  I  N  G  D  D  Y  E  N  K  K  S  L  P  S  L  S  I  K  L  I  N  *  T  N  I  S  D  *  V  S  V  V  N  V  G  G  N  Q  M  P  M  K  S  R  I  H  S  S   : A  S  M  C  Q  N  I  Y  P  N  L  C  S  *  S  A  R  G  R  Q  M  S  R  T  L  A  A  I  V  G  G  A  A  G  A  V  A  L  V  G  I  L  L  L  I  C  C  F  C  I  F  R  K  R  F  I  S  T  T  S  D  T  G  S  S  D  P  S  V  Q   : V  G  K  N  A  G  V  E  L  T  S  Q  D  A  R  R  F  H  I  E  E  L  S  L  A  T  K  G  F  S  D  K  S  L  I  G  Q  G  K  F  G  E  V  Y  K  G  L  L  H  D  G  M  L  V  A  I  K  </second_frame>
            <third_frame>   V  D  K  K  I  S  W  S  S  G  E  *  Y  T  L  Q  P  T  K  E  L  L  F  E  K  H  L  I  F  F  K  K  G  K  N  T  F  R  V  Y  I  *  I  L  L  S  C  R  R  T  N  Y  L  S  A  P  G  C  F  L  S  A  S  M  A  M  I  M  R  I  R  N  P  F  L  P  C  L  L  N  *  *  I  K  L  T  S  A  I  K  F  Q  S  L  M  W  E  G  I  K  C  Q  *  S  L  E  S  I  H  Q  :  L  Q  C  V  K  I  Y  I  P  T  F  A  A  E  V  L  V  V  A  K  C  Q  G  L  L  Q  Q  L  *  E  V  L  Q  E  P  W  H  W  W  G  F  C  F  S  F  V  A  S  V  F  F  V  K  G  L  F  Q  Q  L  P  T  Q  D  L  L  I  H  L  F  K  :  L  E  K  M  L  G  L  N  *  P  H  K  M  P  D  A  S  T  *  K  N  C  L  W  P  Q  K  V  L  V  I  R  V  *  L  A  K  A  N  L  G  R  C  T  R  D  C  F  M  M  V  C  L  *  Q  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0032J10.4" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100436" stop="100604"/>
                    <exon start="100684" stop="100853"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SARGRQMSRTLAAIVGGAAGAVALVGILLLICCFCIFRKRFISTTSDTGSSDPSVQVGKNAGVELTSQDARRFHIEELSLATKGFSDKSLIGQGKFGEVYKGLLHDGMLVAIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 86 chains have been computed
$ 
$ memory statistics:
$ 75592 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2606 bytes was the average size of a spliced alignment
$ 14664 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1833 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 103 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:25:54
-->
