<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:26:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574916" ref_strand="+" ref_description="SGN-E574916 [34459]">
      <seq>tgaactgtcatgacttattttaactcttcacatgcactattcttagggaaaaaaaaaagccttaaccacatttccacgctcccttcttctcattgattcttctccatcttcatattctctttcaacaactcacaccacgttcgcaacaacaaatctctcaggtgaagagaaggtagctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaacttgccgaagataatccttccctttctaagctcctcattgttttcactgtcagcggtggaggtcttgtggcatactctgaggcaggaaaattgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttattgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtgatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacagtggaaagtcgcagtgttgttgaaccaattcgcaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14616" stop="17471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14915" g_stop="15070" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="296" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="576" r_length="280" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17171" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="615" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E574916" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14915" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTACATGACTCATTTTAACTCTTCACATTCCCATTTCATAGGGAAAAAAAAAAG---AAGCCTCA-A-CCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCG-TGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATC</genome_strand>
        <mrna_strand>TGAACTGTCATGACTTATTTTAACTCTTCACATGCACTATTCTTAGGGAAAAAAAAAAGCCTTAACCACATTTCCACGCTCCCTTCTTCTCATTGATTCTTCTCCATCTTCATATTCTCTTTCAACAACTCACACCACGTTCGCAACAACAAATCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTAGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTGCCGAAGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGAGGTCTTGTGGCATACTCTGAGGCAGGAAAATTGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTATTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTGATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACAGTGGAAAGTCGCAGTGTTGTTGAACCAATTCGCAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291967" ref_strand="+" ref_description="SGN-E291967 [cLET-7-I22]">
      <seq>gggaaaaaaaaaagaagcctcaaccacgttcccttcttctcattgattcttctccatcttcacgtgctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtcacggtgattgcgagattttctaaaactttccgggataatccttccctttctaagctcctcattgttttcactgtcagaggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggctgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatccagaaaacaagaaggtatattgtcgatcaaatctaagcaccaacggaaatgggaaggaagagtttgcagtagattatgactatcttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14660" stop="17571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14960" g_stop="15070" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="245" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="525" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17271" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="664" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E291967" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14960" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCA</genome_strand>
        <mrna_strand>GGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTGCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTCACGGTGATTGCGAGATTTTCTAAAACTTTCCGGGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGCTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540393" ref_strand="+" ref_description="SGN-E540393 [TUS-60-K8]">
      <seq>cctcaaccacgttcccttcttctcattgattcttctccatcttcacgttctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgttttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatccagaaaacaagaaggtatattgtcgatcaaatctaagcaccaacggaaatgggaaggaagagtttgcagtagattatgactatcttgtcattgccactggagcccgtgtaaatacatttcacattcctggtgttgaagagacacccttcttctgaaggaagtagaagatgctcaaaagatccgtagaactgttattgactgttttgagaagcaagtctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14677" stop="17846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14977" g_stop="15070" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="228" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="508" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17339" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="714" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17340" i_stop="17481" i_length="142">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17482" g_stop="17546" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="778" r_length="64" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E540393" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14977" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17339"/>
          <exon e_start="17482" e_stop="17546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAGGTAATCCCCGTTATACCATCTGCAAGTTTGTGATACCAAAAGATTAGGAGTTCGACATAATTTATTTAAGATTAGCTTGGTGACACATTTAGCTCATGCAATACATTGGTCTTGACATTTACATTGGATGCTGTTTGTTCAGGAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</genome_strand>
        <mrna_strand>CCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTTCACATTCCTGGTGTTGAAGAGACACCCTTCTTC-TGAAG..............................................................................................................................................GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAG-AAGCAAGTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288362" ref_strand="+" ref_description="SGN-E288362 [cLES-16-G23]">
      <seq>ctcaaccacgttcccttcttctcattgattcttctccatcttcacgtgctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgctttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14678" stop="17178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14978" g_stop="15070" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="227" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17139" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="514" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E288362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14978" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATG</genome_strand>
        <mrna_strand>CTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTGCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGCTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331733" ref_strand="+" ref_description="SGN-E331733 [cTOD-7-J8]">
      <seq>aaccacgttcccttcttctcattgattcttctccatcttcacgttctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgttttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14681" stop="17481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14981" g_stop="15070" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="224" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="504" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17181" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="553" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E331733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14981" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATC</genome_strand>
        <mrna_strand>AACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254642" ref_strand="+" ref_description="SGN-E254642 [cLEG-29-A16]">
      <seq>gctgtaccctaaggtcaaagatctggtgaagataacacttcttgaggcaacagatcatattttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="17364" stop="19888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17664" g_stop="17732" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17733" i_stop="18636" i_length="904">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="289" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19485" g_stop="19588" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="498" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E254642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17664" e_stop="17732"/>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACATGTAAGACCACACTTCTTTTAAGCATTCCTCTAAAGGATATTTCATATGCATGCTCATACATCATTACTTGAACTACCACCTACTGGAACTTGGAAATATATAGTAGTATATACGTTTACTATCCCGTAAATAGAAGTTCTGGTGGAGTAATACCTCTTTGAGATGCAAGTTTAAGGATGTGATAGAAGTGATTCTTCATGTTTGGCTTTCCAATGATGCCTAGTGATGGATGTTGTCTTCTCTACAGTTTCAGTTTCTGGCTCTTGATTGAGCTTATTGTAAATACAGACTTTGAACCCAAAGGATAGTTTCTTCTCTCGACATTAGGATGTGATACCTGGCATAGGACATTATGCTGTTGAAAGACACGCCAAGCAAAGGACATTTTGGCTGCTAGCCCTTGTTTAACAGTGCTGGGTTTATTGAAAATAATTTTCAGAATGAGCAAAACAGAAAATCATCCAGTTCTGTTCCTTTTCGTCTTCTCTTTTTTCTTTCTTTCTTTTATTTGGAGATAGGTGAAGTAAATCAGGCTGCTTCTCAGTGGTATGCCTTCAAAGAACTGACTAATAATGACATACTAAAATGGGTAATATAACTTTGTAAAGAGGTTGAAACAGAGCAGATTCACCATTTTATTCCAAAATCTAGTAGTTTATGCAGATCTTTTCAGTAGATGCCTTTTTGTTGTTTGGTAGTAAAAATTTTGCAAAAAAAATTGGTGATTTATTAGCTCAGAGACATCTAAAGTCGTAAGTGCTGCTATGTGATTGGTGATGCCTGAGCAGATTCAAGTATTTCTAGTTATACTGCAACCGTTTTAACTTGAGACATGCATCTTCTATTATGAGCTCATTTTTCAATATCACTTGTGTTCTGATATTAATCTGTTTATCATTTATAGGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCC</genome_strand>
        <mrna_strand>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253989" ref_strand="+" ref_description="SGN-E253989 [cLEG-34-C15]">
      <seq>tgtaccctaaggtcaaagatctggtgaagataacacttcttgaggcaacagatcatattttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaagtggagctttacttgaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="17366" stop="19915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17666" g_stop="17732" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17733" i_stop="18636" i_length="904">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="287" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19485" g_stop="19615" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="523" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E253989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17666" e_stop="17732"/>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACATGTAAGACCACACTTCTTTTAAGCATTCCTCTAAAGGATATTTCATATGCATGCTCATACATCATTACTTGAACTACCACCTACTGGAACTTGGAAATATATAGTAGTATATACGTTTACTATCCCGTAAATAGAAGTTCTGGTGGAGTAATACCTCTTTGAGATGCAAGTTTAAGGATGTGATAGAAGTGATTCTTCATGTTTGGCTTTCCAATGATGCCTAGTGATGGATGTTGTCTTCTCTACAGTTTCAGTTTCTGGCTCTTGATTGAGCTTATTGTAAATACAGACTTTGAACCCAAAGGATAGTTTCTTCTCTCGACATTAGGATGTGATACCTGGCATAGGACATTATGCTGTTGAAAGACACGCCAAGCAAAGGACATTTTGGCTGCTAGCCCTTGTTTAACAGTGCTGGGTTTATTGAAAATAATTTTCAGAATGAGCAAAACAGAAAATCATCCAGTTCTGTTCCTTTTCGTCTTCTCTTTTTTCTTTCTTTCTTTTATTTGGAGATAGGTGAAGTAAATCAGGCTGCTTCTCAGTGGTATGCCTTCAAAGAACTGACTAATAATGACATACTAAAATGGGTAATATAACTTTGTAAAGAGGTTGAAACAGAGCAGATTCACCATTTTATTCCAAAATCTAGTAGTTTATGCAGATCTTTTCAGTAGATGCCTTTTTGTTGTTTGGTAGTAAAAATTTTGCAAAAAAAATTGGTGATTTATTAGCTCAGAGACATCTAAAGTCGTAAGTGCTGCTATGTGATTGGTGATGCCTGAGCAGATTCAAGTATTTCTAGTTATACTGCAACCGTTTTAACTTGAGACATGCATCTTCTATTATGAGCTCATTTTTCAATATCACTTGTGTTCTGATATTAATCTGTTTATCATTTATAGGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAA</genome_strand>
        <mrna_strand>TGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAAGTGGAGCTTTACTTGAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371006" ref_strand="+" ref_description="SGN-E371006 [TUS-29-L11]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaggagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcatgttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="18333" stop="20225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19485" g_stop="19757" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="606" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19857" g_stop="19925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="675" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E371006" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19757"/>
          <exon e_start="19857" e_stop="19925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCG</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAGGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAT...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370451" ref_strand="+" ref_description="SGN-E370451 [TUS-29-K11]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataacaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtgatggtgttaaggagtcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="18333" stop="19979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19485" g_stop="19679" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="528" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E370451" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATT</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAACAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTGATGGTGTTAAGGAGTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280409" ref_strand="+" ref_description="SGN-E280409 [cLER-1-N17]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="18333" stop="19925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19485" g_stop="19625" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="474" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E280409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGT</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705406" ref_strand="+" ref_description="SGN-E705406 [FA27AC03]">
      <seq>gccattagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaagagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattangctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="18656" stop="21053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19485" g_stop="19757" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="378" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19857" g_stop="19978" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="500" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20264" g_stop="20383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="620" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20477" g_stop="20753" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="897" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E705406" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19757"/>
          <exon e_start="19857" e_stop="19978"/>
          <exon e_start="20264" e_stop="20383"/>
          <exon e_start="20477" e_stop="20753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTG</genome_strand>
        <mrna_strand>GCCATTAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTANGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548377" ref_strand="+" ref_description="SGN-E548377 [TUS-60-K8](-)">
      <seq>ttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaagagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagcctttaatgtcacaatgtttaatggagtataagttttggtattttttggatgaagtaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="19305" stop="21223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19605" g_stop="19757" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19857" g_stop="19978" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="275" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="395" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20477" g_stop="20930" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="849" r_length="454" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E548377" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19605" e_stop="19757"/>
          <exon e_start="19857" e_stop="19978"/>
          <exon e_start="20264" e_stop="20383"/>
          <exon e_start="20477" e_stop="20930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGC</genome_strand>
        <mrna_strand>TTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371005" ref_strand="+" ref_description="SGN-E371005 [TUS-29-L11](-)">
      <seq>tccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagcctttaatgtcacaatgtttaatggagtataagttttggtattttttggatgaagtaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="19539" stop="21223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19742" g_stop="19757" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19857" g_stop="19978" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="138" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="258" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20477" g_stop="20932" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="714" r_length="456" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E371005" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19742" e_stop="19757"/>
          <exon e_start="19857" e_stop="19978"/>
          <exon e_start="20264" e_stop="20383"/>
          <exon e_start="20477" e_stop="20932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGCTG</genome_strand>
        <mrna_strand>TCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690063" ref_strand="+" ref_description="SGN-E690063 [LH_Ea02I13]">
      <seq>ctccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggttgtttgtgggtttcctgccatcacaattttgcagctacacgaagtactacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagccttttaatgtcacaatgttcaatggagtataagttttggtatttttcggttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="20276" stop="21223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20574" g_stop="20926" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E690063" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20574" e_stop="20926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACAC---G-A--ACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCC-TTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCA</genome_strand>
        <mrna_strand>CTCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTTGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAAGTACTACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTTAATGTCACAATGTTCAATGGAGTATAAGTTTTGGTATTTTTCGGTTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693903" ref_strand="+" ref_description="SGN-E693903 [LH_Ea02I13](-)">
      <seq>ctccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggttgtttgtgggtttcctgccatcacaattttgcagctacacgaagtactacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagccttttaatgtcacaatgttcaatggagtataagttttggtatttttcggtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="20276" stop="21223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20574" g_stop="20909" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="366"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E693903" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20574" e_stop="20909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACAC---G-A--ACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCC-TTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGG</genome_strand>
        <mrna_strand>CTCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTTGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAAGTACTACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTTAATGTCACAATGTTCAATGGAGTATAAGTTTTGGTATTTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578979" ref_strand="+" ref_description="SGN-E578979 [86102]">
      <seq>aaagtgtccacatttttcaccattctcaagactgagttttcttgagatggaaatgaatccgagcttgaaaaaaccgagggaatctgtagatttatcgaactcatcggagttaactcagtcagcattcccagatgaggtgttggagaaggtgttgtctcttgttcagtctcataaagatagaaattcagcttcactggtgtgcaaggattggtataatgcagagcgttggacaaggactaagctgtttattgggaattgctattcagttactcctgagattgtagcaagaagattcccaaagattaagagtgttacccttaaagggaaaccaagattttctgactttaatttggtaccagagaattggggtgctgatattcaggcttggcttgatgtttttgccaaagtttacccctttcttgaggagttgagattgaaaagaatggctgttagtgatgagagtttggagtttttggcaaaatcatttcttggatttaaggctctctcattgttgagttgtgatggttttagcactgatgggatcagtagcattgctgctcactgcaagaacttgacagagctggacattcaggagaatggcatggatgatatttgtggtagttggctaagttgttttccggatgacttcacatcactggaggtgcttaactttgcctgtatgaacactgagatcagtaaagatgctttaagagagacttgtcgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="35015" stop="38181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35315" g_stop="35350" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35351" i_stop="35880" i_length="530">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35881" g_stop="36412" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="567" r_length="531" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36413" i_stop="37723" i_length="1311">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37724" g_stop="37877" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="722" r_length="155" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E578979" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35315" e_stop="35350"/>
          <exon e_start="35881" e_stop="36412"/>
          <exon e_start="37724" e_stop="37877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTCCACATTTTTCACCACTCTCAAGACTGAGGTATGAAATAAAAATAAGAAGAAGAAAAAAGCCAACAGCTTTTTCAATTCGTGTTCAAATCCAGTTTGTTTTTTTCTCTTACAACTCACGCTTTTCTTCCTGTTTTTCTTGTAATTGTTCTGAAATTTTACTGATTCTTTTCCTCTTTTTCTTTTGTTTTTTTCTGTGTGTTAGATTGATATAAGCATGGTTTTTTCTGGCCCATTTCTTTTATCTGCTTTTTTTCAGTAGCATTTCAGAAATTTCTCAGCCTTTTTTCTCTTTTAGAGTTTAGACCCATCTCTCTTGCTCTGTTTTCTTGAAGCTCTAAATTGGAGTAGAAGAACTGATTGCAGATGATGTTTTCTTTTTGAAATTCAGGTGACTCAAGATGGTTTTTGTTTTTGTTTTTTACAAATCTTGAAAGCTAGTTTTTCTATGTTTATTCAACTGAGGGGGTTAAAGCTGGAATCTTGCTGTTGAAAATTTTGTCAGCATGTTGAAAAATAGGATAAAGATTTGAACTTTGAGTTGTTTTGATTTCAGTTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACTGCAAGTAAGATGATCTTTTAACTTGTGTCAACTTTTGATTGTTATTTTTAATACTATCATTTACGTTTCAGATATGGATGTTGTTTTGATTGGATAAAAAATCTATCTTTTTTTCAAGGAATAGTTTTTATTTGATTGTAACTGGTATATCTAGCATCTGACTTCAAGATCTCAGTTTTCTGTTATGGTGGATTTAGAATTCTTTCAAGGCAGATTGAGGAAAAACAGTAGTGTTTACAAGGTGGTCCATGCTAATTATTGTAGTAATGGAGGACAAAACAGTAGACCCATGTGTCTGGATGTGGAATGGTTAAGAAACTTGTATTTTTCATTTGAAGTGGCCATGTGAGTGAAGAAATAAAAAAGTGACATGTTCTGGACTTGGGACATGTTATAGGTCTCGCTGTTTATCTTGTTATCACCACCTTGTCTTGCCACACATTAAAAAGAAAGAAGAAAAAAAGTATAAGTGGAAATTGAAATGGTTCCACTTTATGATTTCTTTTTCTGTTCCTTTTTTATGTTACTTTCATGATGTGACATTGACCTGTTAATGAGCATTAATTAAGGGAATTCTTTGATGTCATTGTTAGGCATAAATAACTCTTCTTATTGGTCAAGAAAGAGTTTCTATTTTAACTTGGATTGTGTAACAGATATTTGATCTCTTAACCTTTTAATGTCTATTAGACTTGTTCAATGTATGGAGCTTCAACTAGTATATACTATGTATATTTTGTCAAACTGTTGTCTAGTTTTGTAGCACCACTTGGTTATTATGGTTTATGAGGCTGTCGGGTTGATTGTTGTCTTGACAAATAAGGAATACCATCACAAAGGTGTCTAGGTCGCATATCTAGATTTTGCTGTGACCAGAACTTAATGATTCTGATATCATATAGTTTTAAACGTAGGAGTTGGCATCTTTGCAAGTTTAAGTTACGATAATCTGAACCAAAAAGAATGTGAGGATGTGGGATCTTTGGTTGTTCTGGTCTGCAATCGTTCCAAAGAAATGTAGTTTGAAGGATGGCTCTAATGTCATATCCACAATTCAATATACTTGGACAGTTGGACTTGTATATAACAAATGTCTTCATGTACTATCTAAATGATGCATACAATGAGGTTCTATTTATGTGATGATAGCAAGATTTCATTTGAGTAATATTCCAAGGTATAGAAAAGCAAAACATGTTTTCTTCATAGGCAGCAGAAATGTCAGTTTGTTTTGTGGCTCTTAATTGATGCTTATCAGCATGAAACCAAGTTATCTTAATTGCTATACCTATCTAAATGTTGGTTTTCTTCTCAGGAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTT-AGAGAGACTTGTC</genome_strand>
        <mrna_strand>AAAGTGTCCACATTTTTCACCATTCTCAAGACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAACTCATCGGAGTTAACTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGATAGAAATTCAGCTTCACTGGTGTGCAAGGATTGGTATAATGCAGAGCGTTGGACAAGGACTAAGCTGTTTATTGGGAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTCCCAAAGATTAAGAGTGTTACCCTTAAAGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCAGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTAGTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTCTCATTGTTGAGTTGTGATGGTTTTAGCACTGATGGGATCAGTAGCATTGCTGCTCACTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTGTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTCACATCACTGGAGGTGCTTAACTTTGCCTGTATGAACACTGAGATCAGTAAAGATGCTTTAAGAGAGACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570164" ref_strand="+" ref_description="SGN-E570164 [14705]">
      <seq>gtccacatttttcaccattctcaagactgagttttcttgagatggaaatgaatccgagcttgaaaaaaccgagggaatctgtagatttatcgaactcatcggagttaactcagtcagcattcccagatgaggtgttggagaaggtgttgtctcttgttcagtctcataaagatagaaattcagcttcactggtgtgcaaggattggtataatgcaggagcgttggacaaggactaagctgtttattgggaattgctattcagttactcctgagattgtagcaagaagattcccaaagattaagagtgttacccttaaagggaaaccaagattttctgactttaatttggtaccagagcaattggggtgctgatattcaggcttggcttgatgttttttggcaaaggtttacccctttcttgaggagttgaagattgaaaagaatggctgttagtgatgagaggtttggagtttttgggcacaaatcatttcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="35020" stop="36638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35320" g_stop="35350" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35351" i_stop="35880" i_length="530">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35881" g_stop="36338" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="496" r_length="465" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E570164" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35320" e_stop="35350"/>
          <exon e_start="35881" e_stop="36338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACATTTTTCACCACTCTCAAGACTGAGGTATGAAATAAAAATAAGAAGAAGAAAAAAGCCAACAGCTTTTTCAATTCGTGTTCAAATCCAGTTTGTTTTTTTCTCTTACAACTCACGCTTTTCTTCCTGTTTTTCTTGTAATTGTTCTGAAATTTTACTGATTCTTTTCCTCTTTTTCTTTTGTTTTTTTCTGTGTGTTAGATTGATATAAGCATGGTTTTTTCTGGCCCATTTCTTTTATCTGCTTTTTTTCAGTAGCATTTCAGAAATTTCTCAGCCTTTTTTCTCTTTTAGAGTTTAGACCCATCTCTCTTGCTCTGTTTTCTTGAAGCTCTAAATTGGAGTAGAAGAACTGATTGCAGATGATGTTTTCTTTTTGAAATTCAGGTGACTCAAGATGGTTTTTGTTTTTGTTTTTTACAAATCTTGAAAGCTAGTTTTTCTATGTTTATTCAACTGAGGGGGTTAAAGCTGGAATCTTGCTGTTGAAAATTTTGTCAGCATGTTGAAAAATAGGATAAAGATTTGAACTTTGAGTTGTTTTGATTTCAGTTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCA-GAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAG-AATTGGGGTGCTGATATTCAGGCTTGGCTTGATG-TTTTTGCCAAA-GTTTACCCCTTTCTTGAGGAGTTG-AGATTGAAAAGAATGGCTGTTACTGATGAGA-GTTTGGAGTTTTT-GGCA-AAATCATTTCTTGGA</genome_strand>
        <mrna_strand>GTCCACATTTTTCACCATTCTCAAGACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAACTCATCGGAGTTAACTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGATAGAAATTCAGCTTCACTGGTGTGCAAGGATTGGTATAATGCAGGAGCGTTGGACAAGGACTAAGCTGTTTATTGGGAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTCCCAAAGATTAAGAGTGTTACCCTTAAAGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCAGAGCAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTTGGCAAAGGTTTACCCCTTTCTTGAGGAGTTGAAGATTGAAAAGAATGGCTGTTAGTGATGAGAGGTTTGGAGTTTTTGGGCACAAATCATTTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570964" ref_strand="+" ref_description="SGN-E570964 [15631]">
      <seq>caggagaatggcatggatgatatttgtggtagttggctaagttgttttccggatgactttacatcactggaggtgcttaactttgcctgtatgaacactgagatcagtaaggatgctttagaagagacttgtcggtagatgcaaatcactgagggttctgaaggttaacaagaacgtcaccttgcctcagttgcaacgcctgctcgtccgagctcctcagctgatggagctgggtacaggatgctttcttccagatcaactcacaagtcggcagtatgcagaacttgaaagtgcattcagcaactgcaaacatctgcactctctttcaggcttttgggaagcaaatcgtcgatatttaccatctctttatgcagcctgtgctaggctgactttcctcaacttgagctatgaagcaattaggagtggtgaattttcgaagcttcttgctcattgcccaaatttaaggcgcctttgggtcctagacactgtcaaagataaggggttagaggctgttggaaccagctgcccattgcttgaagaattgcgagtctttcctgctgacccttttgaagaggatatggaccatggagtgactgagtcaggctttgtggctcgtgtctgctggttgttcctaagcttcaatatgttctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="37446" stop="39504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37746" g_stop="38219" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38220" i_stop="39026" i_length="807">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39027" g_stop="39204" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="655" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E570964" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37746" e_stop="38219"/>
          <exon e_start="39027" e_stop="39204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTTAG-AGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTGAACAAGAACGTCACCTTGCCTCAGTTACAACGCCTGCTCGTCCGGGCACCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGAAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGTTTCTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGTCTGACTTTCCTCAACTTGAGCTATGAAACCATTAGGAGTGGTGAACTTTCGAAGCTTCTTCTTCATTGCCCAAATTTAAGGCGCCTTTGGGTAAGAATCTTCCTCAGGCTTTAACATTAATGTGATAAATCCTTTCATGATAAGGTCTTAGGTATTGACCTCCTAACATTTGACATTTTGTCAAGGAACGACGCAATAGATCTTTAATTTTCCCATCTACATGTATGTGTGTGGTTATTCCCCAACACTTAAATTCTATTTCTTCATTAAAAAGTATATTTCCCACCTATGTTCTCCCTGAGGAACAAATAACATCTCTACGAGAGAGCATTGCACGTTTGTTCATAAAATTTGATATTTCCTTCATGAAGATATCCCGTACTAGTTTTGGGAAGAAGTTTGTGCATTACATCTTCCTCTATTGTTTGCCAAAAGAAGTTGGTTGAACTACTCTCAACTGGTATAGTTATTTAGGAGTGCATATACATTCCTGTTTGGGATGAAGGTTAGCTTGAGCCTCACATTAGTGCCTGATCAGGACTATCTGCATGCTTTTAAGCGGATATATAACCTGTTCATCACTTGAGTAATAAGAGAGAGGAGGTACCATATTCACCATAATCTGTATGGTGAACTCCTCGGAATAGAATACAGAAGGAAAAGGTGGAGGGAAAAAGGGAGTTTCCAGTTGTATTCGTTAACAAAGATAATTTCCATTCCAGCACCATGTAAAATCAACTTCGTTGTCAACTGAAAGTACCACTAATGTCTTTTAAGTTTAAACTGCTCTGGGGTTTTTTTCTCTAGGGGATAAGTATTCAAGTGATGCTAATCACCTTTTTCTTTTTAATCCATTTCTTACTTTCAAGGTCTTCATGCCTAATCTTTCTGTTATAGGTCTTAGACACTGTCAATGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAACTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACGGAGTCAGGCTTTATAGCT-GTGTCTGCTGGTTG-TCCTAAGCTTCAATATGTTCTCTATT</genome_strand>
        <mrna_strand>CAGGAGAATGGCATGGATGATATTTGTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCTGTATGAACACTGAGATCAGTAAGGATGCTTTAGAAGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTTAACAAGAACGTCACCTTGCCTCAGTTGCAACGCCTGCTCGTCCGAGCTCCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGCAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGCTTTTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGGCTGACTTTCCTCAACTTGAGCTATGAAGCAATTAGGAGTGGTGAATTTTCGAAGCTTCTTGCTCATTGCCCAAATTTAAGGCGCCTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGACACTGTCAAAGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAATTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACTGAGTCAGGCTTTGTGGCTCGTGTCTGCTGGTTGTTCCTAAGCTTCAATATGTTCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341048" ref_strand="+" ref_description="SGN-E341048 [cTOE-22-G1]">
      <seq>cataactgccccaatttcacccattttcgtctctgtataatgagccctggccagccagattacttgacaaatgaacccatggatgaggcatttggtgcagtggtcaagacttgtaaaaagctccagaggctttctgtttctggacggttgactgacctgacctttgagtatattgggaagtatgccaaaaaccttgagacactttcagttgctttttctggcggcactgactggggtatgcagtgcgtgctcgacggctgttctaagctgaggaagctggagataagggattctccatttggaaatgcagcacttctttctggaatggggaagtatgaatcaatgcggtgtctttggatgtcagcttgcagggtcaccatgaatggttgtagaatacttgcacgagagagacctangttgaatgtcgaggtaatcaaagatgagcacagcgatgactatgctgataaattatacgtctatcgttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="38946" stop="40033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39246" g_stop="39733" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E341048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39246" e_stop="39733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</genome_strand>
        <mrna_strand>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTANGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454735" ref_strand="+" ref_description="SGN-E454735 [cSTS-24-O21]">
      <seq>cctcgtgccgcaaaatctctaactaattcgccggaatcttcacttttccgaccccatctcgccggagaatggaattcaggcaagtccaatgaaaagcgacatgtttactctaccggaaaatgcagaaaatccagttgggtcatccgccggaaaatcaagaatccggcgagttattgagttcatttcttcacttatatctctttcttattcaatcaaagttttccctgtgaaatggcaatcgatacgaaacaagcttgaagagcttctttcgagtttatctgccattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaactgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaggagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttctatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="48676" stop="49965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48971" g_stop="49665" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E454735" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48971" e_stop="49665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACC</genome_strand>
        <mrna_strand>CCTCGTGCCGCAAAATCTCTAACTAATTCGCCGGAATCTTCACTTTTCCGACCCCATCTCGCCGGAGAATGGAATTCAGGCAAGTCCAATGAAAAGCGACATGTTTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTATTGAGTTCATTTCTTCACTTATATCTCTTTCTTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAACAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCCATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAACTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAGGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTCTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467544" ref_strand="+" ref_description="SGN-E467544 [cSTB-49-E14]">
      <seq>ctctaactaattcgccggaatcttcacttttccgaccccatctcgccggagaatggaattcaggcaagtccaatgaaaagcgacatgtttactctaccggaaaatgcagaaaatccagttgggtcatccgccggaaaatcaagaatccggcgagttattgagttcatttcttcacttatatctctttcttattcaatcaaagttttccctgtgaaatggcaatcgatacgaaacaagcttgaagagcttctttcgagtttatctgccattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaactgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaggagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttctatattagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="48687" stop="49847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48987" g_stop="49547" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E467544" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48987" e_stop="49547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGAT</genome_strand>
        <mrna_strand>CTCTAACTAATTCGCCGGAATCTTCACTTTTCCGACCCCATCTCGCCGGAGAATGGAATTCAGGCAAGTCCAATGAAAAGCGACATGTTTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTATTGAGTTCATTTCTTCACTTATATCTCTTTCTTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAACAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCCATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAACTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAGGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTCTATATTAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211082" ref_strand="+" ref_description="SGN-E211082 [cLEC-69-D19]">
      <seq>gaaatggcaatcgatacgaagcaagcttgaagagcttctttcgagtttatctgctattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaattgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaagagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttttatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataaccttgtttctgtgttagtgagttttcttgatttgcaagaagataatcttcaagaagaagcagctaaggcattatctgtaatagcagggtttcaatcttttagaagttgtttgatttctgctggaataatttcccctttgattagagttttggagtgtgggattgggttgagtnaagaattgccaccaggtgtttgcaaaagctcacagagaactcagataatgcatgggtcatttcagctcatggtggggttactgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="48899" stop="50225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49199" g_stop="49925" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E211082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49199" e_stop="49925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</genome_strand>
        <mrna_strand>GAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTNAAGAA-TTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGGTCATTTCAGCTCATGGTGGGGTTACTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324378" ref_strand="+" ref_description="SGN-E324378 [cTOC-6-L17]">
      <seq>acagctaccctcaagaattgccatgaactttctcggcattgtgttgagttttcttatggtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaagagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttttatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataaccttgtttctgtgttagtgagttttcttgatttgcaagaagataatcttcaagaagaagcagctaaggcattatctgtaatagcagggtttcaatcttttagaagttgtttgatttctgctggaataatttcccctttgattagagttttggagtgtgggattgggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="49014" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49314" g_stop="49833" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E324378" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49314" e_stop="49833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGA</genome_strand>
        <mrna_strand>ACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATGGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403390" ref_strand="+" ref_description="SGN-E403390 [PPC-10-B7]">
      <seq>actaatgggggatgctggatttatgcctgagttagtgaagtttcttgattcaaagtcatttgaggttagagaaatggcagctgaaacactatcaagtatggtgattgtaccaagaaaccaaaagagatttggacagaatgatgaaaatgttggtttgctgctgcaaatgcttgatccagaacaggcaaattttggcaacaaaaatctgttgctttctatactcatgtcattaacaagttgcaatagtgccagaaagaaaattgcaaactcagggtatctgataaacattgagaagttagctgaggctgaagtatcagatgcaaaaaagattgtcagaaaattgtcttcaaatagattcagaagcattctcagtggaatctggcattcataatcaatgtaattcaattttgtcttatgcttaaatattttaccaaaaccaaaaaacagaaaggagatcttatgtaatataatccaagataaatgtactttattgttaagaaagagcttttagaacatccccttttgccctttttagcttctagtcatataataaaaaaaaagattactgaatattacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="50100" stop="51300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50399" g_stop="50930" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E403390" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50399" e_stop="50930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTA-TTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</genome_strand>
        <mrna_strand>ACTAATGGGGGATGCTGGATTTATGCCTGAGTTAGTGAAGTTTCTTGATTCAAAGTCATTTGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATGAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAACAGGCAAATTTTGGCAACAAAAATCTGTTGCTTTCTATACTCATGTCATTAACAAGTTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAGAAGTTAGCTGAGGCTGAAGTATCAGATGCAAAAAAGATTGTCAGAAAATTGTCTTCAAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAAATATTTTACCAAAACCAAAAAACAGAAAGGAGATCTTATGTAATATAATCCAAGATAAATGTACTTTATTGTTAAGAAAGAGCTTTTAGAACATCCCCTTTTGCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433326" ref_strand="+" ref_description="SGN-E433326 [STM-58-G8]">
      <seq>actaatgggggatgctggatttatgcctgagttagtgaagtttcttgattcaaagtcatttgaggttagagaaatggcagctgaaacactatcaagtatggtgattgtaccaagaaaccaaaagagatttggacagaatgatgaaaatgttggtttgctgctgcaaatgcttgatccagaacaggcaaattttggcaacaaaaatctgttgctttctatactcatgtcattaacaagttgcaatagtgccagaaagaaaattgcaaactcagggtatctgataaacattgagaagttagctgaggctgaagtatcagatgcaaaaaagattgtcagaaaattgtcttcaaatagattcagaagcattctcagtggaatctggcattcataatcaatgtaattcaattttgtcttatgcttaaatattttaccaaaaccaaaaaacagaaaggagatcttatgtaatataatccaagataaatgtactttattgttaagaaagagcttttagaacatccccttttgccctttttagcttctagtcntataataaaaaaaaagattactgaatattacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="50100" stop="51300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50399" g_stop="50930" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="562"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E433326" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50399" e_stop="50930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTA-TTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</genome_strand>
        <mrna_strand>ACTAATGGGGGATGCTGGATTTATGCCTGAGTTAGTGAAGTTTCTTGATTCAAAGTCATTTGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATGAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAACAGGCAAATTTTGGCAACAAAAATCTGTTGCTTTCTATACTCATGTCATTAACAAGTTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAGAAGTTAGCTGAGGCTGAAGTATCAGATGCAAAAAAGATTGTCAGAAAATTGTCTTCAAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAAATATTTTACCAAAACCAAAAAACAGAAAGGAGATCTTATGTAATATAATCCAAGATAAATGTACTTTATTGTTAAGAAAGAGCTTTTAGAACATCCCCTTTTGCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428890" ref_strand="-" ref_description="SGN-E428890 [STM-51-G23]">
      <seq>aagagaccagagaggtggtgcacttccagagcaaggaggcttcggaggagttcaacattatggctctcaacaaggtggaagttctggacaacaaacctttggaggtcaaccactgagatatggccccacatttgggcagaacaatccaaggccaggaggaaatcagaatttcccaccgatggagcagcagggcaacatgcaagggggggagcagaggacttatgaatctagtggtacaatgggaacggatcaagagagatactgaagatatggcgcagtatcatgacgtactgagaaatgatttgtcaattagcttttgactagctaaaggtgatggttattgtctgaataattgagaaatgatcacgatcacttcctcaacaatcaccaagaaacttggactgagaaaatattgttgtggtaaatagtttatcgatgtcttagtatggttatggaaatggtgctttgtgaatgataacatggagagactcaggtgtaaaacaagcatccggtatatgtttctttttgtgtaaggaagaaggtttgtaatgcctttgcttaattttgttatcttagctaagttagcagctggaattgcaagaaaatgtaataaaacatatctaagttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="54615" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54315" g_stop="54063" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54062" i_stop="52849" i_length="1214">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52848" g_stop="52497" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="601" r_length="348" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="651"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E428890" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54315" e_stop="54063"/>
          <exon e_start="52848" e_stop="52497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAAGTAAGCTGTTGCTTCCCTAACCCTCTTATGCGTTGTTTTACTGTTTATTTCTCTGTGAATGACATGATATGATGTATTTGTATTTAAGAGGGAGATAACTTGGAATATCCTCCCTCCAATTGTCTGTTTTCAACCATTACAACCTTTTAACTATGTGTGTCCTATAACTTTAAGTTGCTCGGAATTGGTTTTGGGTGTCCGATAGGGTGTCGATTTAGAAACAAATTTCTTTAAAGCGGACAACTTTTTTTTTTTGTGTGTGGAGGGGTGATTTTTATGTATATTTCCTATTTAAAATAACCAGAAAAGGTAATATCTATTATTTTATGAGTGGTTCGTGCACCACTTTCTCAGCTATTGTGGTTTTTGTCTTGTAAGGAGGTTAAAGAGCATTGTGGACAAGAGGGATTTAATAGGAACCCTACATAGTTGAGGTTCTAATGGGCGAAAACAGACTACTTTGGGGGTGGCGGCGGCGGGGATTTATGTATTTTCCCTGTTTAAAACCACCAAACAAGGTAATGTCTGTCAGATTCTTTAAAGGTTGATCAGAAAACAATGAGTTCCCAAACCAAAAAACTATTTTGCTGGTTCTCTATTATAGTAATGTCAACCATTTGAAAATTCAAATTTGAGTTACTAAAGACATTCAGAAGACAAAGTATTAATGATATTTATGTATGAAAGACTCAGTTTCAAAAAAAAAGAGAAGAGAATGATATATGTCTGAAAGACATATTCTATCCATAGATACAACAACTTAGATTGCTGATTCCTTTTTAGTTGTTAAAAAAAGTTGTTTCGCGTTTTCTCTTGCCAATATACTGATCTAGTAGTTTGACCAGCCAAAAGTTTGTCGTAGCATCAAAGTTATTCATTTTAGAGCACTTCTGTACATTCAATGGTTCTAGCTTTTTGAACTGGAATTTAATTAGGCTAACCCGGAAGGAAGGGGTCATACAAATTTTCTTGATCAAAAAATAAAAATCAAAACTACAGCACCAAAGTGATTGGCCATACACCCTAGAATTCTCTATTGGAATTTTTTTATTAGTAGAGATTTTTAAAATTGTTGGAATGCTCTTTTCTATATTCTGTAACAACTTGGTGACAGAAATACAATGCTTTCAATAACAACCTCTGCAGTTTATTCAAATGAGTCAACTTGCTATCTCTCCATTTGTTCAACACTTATTCTCTGTTAACGTCTGCAGGAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGA-TTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCT--GAAGA-A-TGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAATGCATTTGCTTAATTATTTGTTGTCTTAGCTAAGTTTGCAGCTGGAATGAAAAG</genome_strand>
        <mrna_strand>AAGAGACCAGAGAGGTGGTGCACTTCCAGAGCAAGGAGGCTTCGGAGGAGTTCAACATTATGGCTCTCAACAAGGTGGAAGTTCTGGACAACAAACCTTTGGAGGTCAACCACTGAGATATGGCCCCACATTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATGGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGAATCTAGTGGTACAATGGGAACGGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATACTGAAGATATGGCGCAGTATCATGACGTACTGAGAAATGATTTGTCAATTAGCTTTTGACTAGCTAAAGGTGATGGTTATTGTCTGAATAATTGAGAAATGATCACGATCAC-T--TC----CTCAACAATCACCAAGAAACTTGGACTGAGAAAATATTGTTGTGGTAAATAGTTTATCGATGTCTTAGTATGGTTATGGAAATGGTGCTTTGTGAATGATAACATGGAGAGACTCAGGTGTAAAACAAGCATCCGGTATATGTTTCTTTTTGTGTAAGGAAGAAGGTTTGTAATGCCTTTGCTTAA-T-TTTGTTATCTTAGCTAAGTTAGCAGCTGGAATTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712311" ref_strand="+" ref_description="SGN-E712311 [FB04CA04]">
      <seq>ctccaccgcaacagaactatggctcacgacagtatgctccgccacctcaacagaactacagacaaccacaggatctttctccacagcagaattatgagcggccacagaatcctcagccaaaccagagttacggtgtacctcagagtgttccttctcagtggaatcatggccttcagccaaaatttgtacctcaacagatctatgggcctcaaggggctggggatcataggggtcctgcacctcctgatagcaacctagatgcgtgggataattcccaggttggatggggtgattcaatacgttcaccttttcctcgaagagaccagagaggtggtgcacctccagagcaaggaggctttggaggagttcaacattatgggtctcaacaaggtggaagttctgaacaacaaacctttggagatcaaccactgagatatgggccccagtttgggcagaacaatccaaggccaggaggaaatcagaatttcccaccgatagagcagcagggcaacatgcaagggggggagcagaggacttatgcatctagtggtacaatgggaacagatcaagagagatactaaagatatggtgcagtatcatgacgtactgagaaaggattgttaattagcttttgactagctaaaggtgatggttcttgtctgaataattgagaaatgatcatgatcacatcctctagtctcaacaattaccaagaaacttgggctgaagaatgttgtggtaaatagttttccaatgtcttaatatggttatggaaatggggttttgtgaatgataacatggagagacttaggtgtaaaacaagcctcttgtatctgttttcttttgtgcaaggaagaaagtttctattgacnaaaaaaaaacaaaaataaaaaacttggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="54931" stop="52249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54631" g_stop="54063" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54062" i_stop="52849" i_length="1214">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52848" g_stop="52552" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="866" r_length="297" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="873" polyA_stop="887"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E712311" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54631" e_stop="54063"/>
          <exon e_start="52848" e_stop="52552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAAGTAAGCTGTTGCTTCCCTAACCCTCTTATGCGTTGTTTTACTGTTTATTTCTCTGTGAATGACATGATATGATGTATTTGTATTTAAGAGGGAGATAACTTGGAATATCCTCCCTCCAATTGTCTGTTTTCAACCATTACAACCTTTTAACTATGTGTGTCCTATAACTTTAAGTTGCTCGGAATTGGTTTTGGGTGTCCGATAGGGTGTCGATTTAGAAACAAATTTCTTTAAAGCGGACAACTTTTTTTTTTTGTGTGTGGAGGGGTGATTTTTATGTATATTTCCTATTTAAAATAACCAGAAAAGGTAATATCTATTATTTTATGAGTGGTTCGTGCACCACTTTCTCAGCTATTGTGGTTTTTGTCTTGTAAGGAGGTTAAAGAGCATTGTGGACAAGAGGGATTTAATAGGAACCCTACATAGTTGAGGTTCTAATGGGCGAAAACAGACTACTTTGGGGGTGGCGGCGGCGGGGATTTATGTATTTTCCCTGTTTAAAACCACCAAACAAGGTAATGTCTGTCAGATTCTTTAAAGGTTGATCAGAAAACAATGAGTTCCCAAACCAAAAAACTATTTTGCTGGTTCTCTATTATAGTAATGTCAACCATTTGAAAATTCAAATTTGAGTTACTAAAGACATTCAGAAGACAAAGTATTAATGATATTTATGTATGAAAGACTCAGTTTCAAAAAAAAAGAGAAGAGAATGATATATGTCTGAAAGACATATTCTATCCATAGATACAACAACTTAGATTGCTGATTCCTTTTTAGTTGTTAAAAAAAGTTGTTTCGCGTTTTCTCTTGCCAATATACTGATCTAGTAGTTTGACCAGCCAAAAGTTTGTCGTAGCATCAAAGTTATTCATTTTAGAGCACTTCTGTACATTCAATGGTTCTAGCTTTTTGAACTGGAATTTAATTAGGCTAACCCGGAAGGAAGGGGTCATACAAATTTTCTTGATCAAAAAATAAAAATCAAAACTACAGCACCAAAGTGATTGGCCATACACCCTAGAATTCTCTATTGGAATTTTTTTATTAGTAGAGATTTTTAAAATTGTTGGAATGCTCTTTTCTATATTCTGTAACAACTTGGTGACAGAAATACAATGCTTTCAATAACAACCTCTGCAGTTTATTCAAATGAGTCAACTTGCTATCTCTCCATTTGTTCAACACTTATTCTCTGTTAACGTCTGCAGGAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTA</genome_strand>
        <mrna_strand>CTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGGGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTTCTTTTGTGCAAGGAAGAAAGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321105" ref_strand="+" ref_description="SGN-E321105 [cTOB-13-O9]">
      <seq>aattatcgccctcctcagcagaactatgggccagcacagggtcatccaccacagcagaattatggtgcagcacagggtcctccaccacagcagaattataacgcgccacagggtcctccaccccagcagaactatggcccaccaaggtatcctccaccgcaacagaactatggctcacgacagtatgctccgccacctcaacagaactacagacaaccacaggatctttctccacagcagaattatgagcggccacagaatcctcagccaaaccagagttacggtgtacctcagagtgttccttctcagtggaatcatggccttcagccaaaatttgtacctcaacagatctatgggcctcaaggggctggggatcataggggtcctgcacctcctgatagcaacctagatgcgtgggataattcccaggttggatggggtgattcaatacgttcaccttttcctcgaagagaccagagaggtggtgcacctccagagcaaggaggctttggaggagttcaacattatgggtctcaacaaggtggaagttctgaacaacaaacctttggagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="55082" stop="53907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54782" g_stop="54207" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E321105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54782" e_stop="54207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAA</genome_strand>
        <mrna_strand>AATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273220" ref_strand="+" ref_description="SGN-E273220 [cLEM-24-E17]">
      <seq>ttacgagggtagagtttattgagacttatgtgcagactgctgggaaggtcttcgggagtgtggaagaggctaanaaaaagatttatgccttaagcacaacaacttaccgaggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaagtataataacggagaaatcattgagagaccacctcctccacagtttcaaagacaaggtagcaggcctcgaagaggcccacagtatcaacaaggcaattatcgccctcctcagcagaactatgggccagcacagggtcatccaccacagcagaattatggtgcagcacagggtcctccaccacagcagaattataacgcgccacagggtcctccaccccagcagaactatggcccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56275" stop="54339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55975" g_stop="55918" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="54994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="222" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54883" g_stop="54639" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="467" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E273220" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55975" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="54994"/>
          <exon e_start="54883" e_stop="54639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCA</genome_strand>
        <mrna_strand>TTACGAGGGTAGAGTTTATTGAGACTTATGTGCAGACTGCTGGGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAANAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428889" ref_strand="+" ref_description="SGN-E428889 [STM-51-G23]">
      <seq>ttcagagtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggcgatggcgctgtatacttctcgtctccggcgagctctccctctttcctcatccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacgacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctccctggagttgtgtttgtactgcctgattcctatattgatccagtaaacaggnaatatggaggtgacaagtataataatggggaaatcattgagagacacctcctccacagtttcaaagacaaggtagcaagcctcgaagaagccacagtatcaacaagcaattatcgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56663" stop="54470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="55918" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="54994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="612" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110">
            <donor d_prob="0.827" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54883" g_stop="54772" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="721" r_length="109" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E428889" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="54994"/>
          <exon e_start="54883" e_stop="54772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCC</genome_strand>
        <mrna_strand>TTCAGAGTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCGATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCATCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACGACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCTGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAGGNAATATGGAG..............................................................................................................GTGACAAGTATAATAATGGGGAAATCATTGAGAGA-CACCTCCTCCACAGTTTCAAAGACAAGGTAGCAAGCCTCGAAGAAG-CCACAGTATCAACAA-GCAATTATCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481323" ref_strand="+" ref_description="SGN-E481323 [cSTD-17-F14]">
      <seq>tgctgtataccttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcacctctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagagatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaagctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaagtataataatggggaaatcattgagagaccacctcctncacagtttcaaagacaaggtagcaagcctcgaagaggcccacagtatcaacaaggcaattatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56598" stop="54475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56299" g_stop="55918" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="482" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="54994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="548" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54883" g_stop="54775" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="657" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E481323" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56299" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="54994"/>
          <exon e_start="54883" e_stop="54775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGTATAC-TTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCA-CTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCG</genome_strand>
        <mrna_strand>TGCTGTATACCTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACCTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAAGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAGTATAATAATGGGGAAATCATTGAGAGACCACCTCCTNCACAGTTTCAAAGACAAGGTAGCAAGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441939" ref_strand="+" ref_description="SGN-E441939 [cSTA-31-H23]">
      <seq>gtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggctatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcatctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgctaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56659" stop="54692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56359" g_stop="55918" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="540" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="54994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="606" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54883" g_stop="54876" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="614" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E441939" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56359" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="54994"/>
          <exon e_start="54883" e_stop="54876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAG</genome_strand>
        <mrna_strand>GTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCTATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCATCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483447" ref_strand="+" ref_description="SGN-E483447 [cSTE-9-O6]">
      <seq>caaccacccatatccaccggctatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcatctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgctaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccangagttgtgtttgtactgcctgattcctatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56625" stop="54717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56325" g_stop="55918" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="506" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="55017" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="549" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E483447" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56325" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="55017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGA</genome_strand>
        <mrna_strand>CAACCACCCATATCCACCGGCTATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCATCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCANGAGTTGTGTTTGTACTGCCTGATTCCTATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582772" ref_strand="+" ref_description="SGN-E582772 [8405]">
      <seq>gcgatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagagatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcagcgtcttggtgttcagaggacacatccgaagaagtttgaaggtctcccagggagtttgtgtttgtactgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56606" stop="54730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56306" g_stop="55918" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="490" r_length="101" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="0.85"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="55030" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="522" r_length="32" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E582772" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56306" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="55030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAG-GTCTT-GTGTTCAGAGGACACAT-CGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCA-GGAG-TTGTGTTTGTACTGCCTG</genome_strand>
        <mrna_strand>GCGATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGCGTCTTGGTGTTCAGAGGACACATCCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGGAGTTTGTGTTTGTACTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481341" ref_strand="+" ref_description="SGN-E481341 [cSTD-17-J8]">
      <seq>ttcagagtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggcgatggcgctgtatacttctcgtctccggcgaagctctccctctttcctcatccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacgacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56663" stop="54848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="55918" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55148" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="544" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E481341" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="55918"/>
          <exon e_start="55242" e_stop="55148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGA-GCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTG</genome_strand>
        <mrna_strand>TTCAGAGTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCGATGGCGCTGTATACTTCTCGTCTCCGGCGAAGCTCTCCCTCTTTCCTCATCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACGACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304915" ref_strand="+" ref_description="SGN-E304915 [cLEX-10-O8]">
      <seq>ggagctttgattaatggatttgctcagaatgttgctatgctcattattggtcgtatttttcttggttttggttattgctagtgaagcttctaggaaaattgaacatccctggaggaacttgttgcaaaagaaatatagaccacatcttacaatggcaattatgatcccatttttccaacaacttactggaatcaacgtgattatgttttatgcacctgtgttgtttaaaaccattggttttggtactgatgcttcacttatgtctgctgtgatcactggtggaatcaatgtcattgccactattgtttctatttactatgttgataaattaggaagaagattcttgtttcttgaaggtggaattcaaatgctcttttcccaaatagccgtggcaattttgatagcaataaagtttggagtaaatggaactccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="64918" stop="67907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65218" g_stop="65287" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65288" i_stop="67064" i_length="1777">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67065" g_stop="67376" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="382" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67467" g_stop="67607" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="523" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E304915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65218" e_stop="65287"/>
          <exon e_start="67065" e_stop="67376"/>
          <exon e_start="67467" e_stop="67607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTGGTATTGGATTTGCCAATCAGGTGCGTCTATTTTTTTTATTCAATTTAAGTTTTGTGTGCTTGTTGTAAAAAATATTCATTGAACGAGCCTTCTTGTGGTTGGCATGTGGTAATATTCCTAATTATTTGTTTGTTGGTCCGCGCCAATATTACAATAAAAATAACTTTTAGCAGTAATAAATATTAAGTGCTACAATTTCTTTTAGCAGCAGAATCAATATCGCAAAAGATTTTATGACTTTACTTGGCTAATGATCATTTTTGATACAGTACGTGTTTATGCTATTGAGCAACATTATCTATGTGTTTGTCTCTGTTTAATTATTTTTTTTTCTTTCATTTAGTTCAAGGCTGTTCTGTTCTATGGTTCCCCTGTTCTTTTGGATTATGCCATGGAATTATGTTTATTTGTTTTATTTATTTATTTATTTCTTGGTTTTTAAAAACTGTAAAATATAATAATGGCAAGTTGTCGGTCAACACTTCTCCTGCTGTGCGGATCTGAATGGCAGCAAGTACTTACTGAATCCATATATTAGACCACTCATTAAATATATTTTTATTTTATTTTTCTTAGAAAATAATCTTTTTATATTTTGTAAAAAAAAAATTACACTTGAAATCTTAGTATTCACTAAATATCTTGTATTTGTCCATTGAATAATGAAAATATTTTTTGGTTTAAAAGAAAAATGTGTTTTGAATACAACATCATTGTGATTTGGACTTTCGAGCTCTTCCAAGTAAGAGGAACCTACTTTTTTAAATATTGCACGTTAACCCTACATGAAAAGACTTTTTTGCTAAAAAAAACCCCACCACGCACTGTAAACAGTCCATATTTCACCATTATATATATTTTTTTAAAAAAATAATTATTCTTCAGTCCTTTAATTTGAAAAATAAATCTACTTTGGGATTCTTCAGCAAGTTGTGATTGTCATTATCACTTAATCAATATTTAATCCAATGAAAGTTGTTGAGATTTTTTTTTTAAAAAAAAAAACTCTTTTCCTAAAACACTGTTTAGATGTGTGTATTTTATTTTACTCCAATTTTTGTGACGTTGCCGTGATTTCTTTTCTACACCGTTAGCTCATGAATACGACTATTTATAATAATAAACAAATTCGTATAAATCATAAAATTTACATATTTGTTTTTATTTTACTTTCTTTAATTAAGTATTATTGATATATATTGTGTTTTTTATCAACTAGGACAAGAACAAGTGGCCCCCCCTCATGAAGAAAATACAATTCCTCTTACTTTTTTTTTTTTTTAATGTTAACTCGATAATATTTTAGTATTTGAATTTTGAGATTTTAATCATGTCAAGTAGAATGTTGAAATCAAAAGAGTTATCCGATATAGAAAAAAATTGTTATCTTTTTAATGGGACTAAAAAAAGTTTCAGTCAGATACTTAAATTGAACTATTTTTGTTGTTGTTTCATTGACTTGCAGTCTGTTCCACTATACCTATCAGAAATGGCACCATACAAATACAGAGGAGCACTGAACATAGGTTTTCAACTTTCCATCACCATTGGTATACTTGTAGCCAATGTGTTAAACTATTTCTTTGCCAAAATTCATTGGGGATGGAGATTGAGTTTAGGAGGTGCTATGGTACCTGCATTGATCATCACAATAGGTTCATTATTCCTCCCTGAAACCCCTAATTCGATGATCGAACGTGGTAACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAAGTAAGTCCATTTCTTTTTTCTTGCGAATTCAGAAAATTTAGAGTCTATTTTCTAATTTGAACTTGTTTTTTTTTTTGAATTGATGTACAGATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGA</genome_strand>
        <mrna_strand>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA..........................................................................................ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744801" ref_strand="+" ref_description="SGN-E744801 [GI|5734437]">
      <seq>aaccacgacgaagccaaagctcgattgaagagaattaggggaattgaagatgtagatgaagagttcaatgatttggttattgctagtgaagcttctaggaaaattgaacatccctggaggaacttgttgcaaaagaaatatagaccacatcttacaatggcaattatgatcccatttttccaacaacttactggaatcaacgtgattatgttttatgcacctgtgttgtttaaaaccattggttttggtactgatgcttcacttatgtctgctgtgatcactggtggaatcaatgtcattgccactattgtttctatttactatgttgataaattaggaagaagattcttgtttcttgaaggtggaattcaaatgctcttttcccaaatagccgtggcaattttgatagcaataaagtttggagtaaatggaactccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccttttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaattatgttcataagctgtataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="66690" stop="68518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66990" g_stop="67376" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67467" g_stop="68218" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="1139" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1140" polyA_stop="1161"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E744801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1139</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66990" e_stop="67376"/>
          <exon e_start="67467" e_stop="68218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAAGTAAGTCCATTTCTTTTTTCTTGCGAATTCAGAAAATTTAGAGTCTATTTTCTAATTTGAACTTGTTTTTTTTTTTGAATTGATGTACAGATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</genome_strand>
        <mrna_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA..........................................................................................ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394162" ref_strand="+" ref_description="SGN-E394162 [TUS-42-G17](-)">
      <seq>cttcaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccctttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67213" stop="68501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67513" g_stop="68205" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E394162" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67513" e_stop="68205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</genome_strand>
        <mrna_strand>CTTCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCCTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398079" ref_strand="+" ref_description="SGN-E398079 [TUS-42-G17]">
      <seq>ctccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67213" stop="68194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67513" g_stop="67894" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E398079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67513" e_stop="67894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCC</genome_strand>
        <mrna_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393617" ref_strand="+" ref_description="SGN-E393617 [TUS-42-I17]">
      <seq>ctccaggggaattaccttaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcttcttggatggctcgtacctagtgaaattttcccagtggaaattcgatcatctgcacaaagtatccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67213" stop="67969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67513" g_stop="67669" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E393617" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67513" e_stop="67669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGT</genome_strand>
        <mrna_strand>CTCCAGGGGAATTACCTTAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCTTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCAGTGGAAATTCGATCATCTGCACAAAGTATCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285018" ref_strand="+" ref_description="SGN-E285018 [cLER-19-B17]">
      <seq>tccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacataattgtatgactttagtttgggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67214" stop="68275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67514" g_stop="67975" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E285018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67514" e_stop="67975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTT</genome_strand>
        <mrna_strand>TCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACATAATTGTATGACTTTAGTTTGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394166" ref_strand="+" ref_description="SGN-E394166 [TUS-42-I17](-)">
      <seq>agtgaaaattttcccactggaaattggatcagctgcacaaagtatcaatgtttcagtgaacatgatcttcacatttgcagtagcacaagtttttttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccctttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67320" stop="68501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67620" g_stop="68205" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E394166" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67620" e_stop="68205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTG-AAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</genome_strand>
        <mrna_strand>AGTGAAAATTTTCCCACTGGAAATTGGATCAGCTGCACAAAGTATCAATGTTTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTTTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCCTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733781" ref_strand="+" ref_description="SGN-E733781 [LB10DG02]">
      <seq>cattagtgaggtcgaattaccaaacccactatgcagaaaataattcaatatatcatctttaattaatgagtctcacgcagtgggtgttatgcaacactagatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="78137" stop="4730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77838" g_stop="77739" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77738" i_stop="76901" i_length="838">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="171" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="253" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="372" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75561" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="570" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75462" g_stop="75193" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="840" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75192" i_stop="75046" i_length="147">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.219" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75045" g_stop="75024" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="862" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E733781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77838" e_stop="77739"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75561"/>
          <exon e_start="75462" e_stop="75193"/>
          <exon e_start="75045" e_stop="75024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAAGGGACCTTTATGATTTACTTCTTTAATCAGTGTATGTATCCAAAATTTAACTACACAGTTTTAAATATTCATAAAATTGAGAAAATATATTCTCTGTCAAAGTCATCATCTAATAATTTAAAATAAAAATTGAACGGGGAAACAGAAGCAAAACAAGAAACAGATAC</genome_strand>
        <mrna_strand>CATTAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG...................................................................................................................................................AAAAAAAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543014" ref_strand="+" ref_description="SGN-E543014 [TUS-64-J20](-)">
      <seq>tagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggtgaaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgntatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79301" stop="74891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79001" g_stop="78904" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="169" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="251" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="370" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75561" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="568" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75462" g_stop="75192" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="840" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75191" i_stop="75046" i_length="146">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.219" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75045" g_stop="75031" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="855" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E543014" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79001" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75561"/>
          <exon e_start="75462" e_stop="75192"/>
          <exon e_start="75045" e_stop="75031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTG-TATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAAGGGACCTTTATGATTTACTTCTTTAATCAGTGTATGTATCCAAAATTTAACTACACAGTTTTAAATATTCATAAAATTGAGAAAATATATTCTCTGTCAAAGTCATCATCTAATAATTTAAAATAAAAATTGAACGGGGAAACAGAAGCAAAACAAGAAA</genome_strand>
        <mrna_strand>TAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTGAAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGNTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGA..................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225826" ref_strand="+" ref_description="SGN-E225826 [cLEL-17-E16](-)">
      <seq>gttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="76151" stop="74891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75851" g_stop="75819" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75680" g_stop="75561" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="153" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75462" g_stop="75191" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="425" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E225826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75851" e_stop="75819"/>
          <exon e_start="75680" e_stop="75561"/>
          <exon e_start="75462" e_stop="75191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</genome_strand>
        <mrna_strand>GTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211576" ref_strand="+" ref_description="SGN-E211576 [cLEC-67-M7]">
      <seq>ttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagtaccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattcccttttagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79257" stop="74910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78957" g_stop="78904" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="125" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="207" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="404" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75561" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="524" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75462" g_stop="75210" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="776" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E211576" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78957" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75561"/>
          <exon e_start="75462" e_stop="75210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAA</genome_strand>
        <mrna_strand>TTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAG-TACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCCTTTTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705425" ref_strand="+" ref_description="SGN-E705425 [FA27AE01]">
      <seq>cgcttaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtcccactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79594" stop="75328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79299" g_stop="78904" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="467" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="549" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="668" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="746" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75628" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="799" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E705425" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79299" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGA</genome_strand>
        <mrna_strand>CGCTTAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCC..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461394" ref_strand="+" ref_description="SGN-E461394 [cPRO-8-G6]">
      <seq>aaaaagtattgtcagctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtaaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggagcaagtagctgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79555" stop="75364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79272" g_stop="78904" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="518" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="637" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="715" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75663" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="733" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E461394" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79272" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAG</genome_strand>
        <mrna_strand>AAAAAGTATTGT---CA-GCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTAAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGAGCAAGTAGCTGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543015" ref_strand="+" ref_description="SGN-E543015 [TUS-64-J20]">
      <seq>tgcatttccaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79604" stop="75519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79304" g_stop="78904" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="471" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="553" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="672" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="750" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75671" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="760" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E543015" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79304" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAA</genome_strand>
        <mrna_strand>TGCATTTCC-AAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485820" ref_strand="+" ref_description="SGN-E485820 [cSTE-19-L23]">
      <seq>attcaactccctgctgttctaaaatgtattgtcaacacgctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatccatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattcaagtttgtagagcatccagaaaataaatgaaaaccaatggaccagaagagcagagtaaagttcaagatcatgagccctcagggtgaanggaccgatggactatgtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79592" stop="76027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79292" g_stop="78904" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="460" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="542" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76327" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="658" r_length="116" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E485820" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79292" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAG-CCTCAAGGTGAAAGGACCGATGGACTATGTACCTGA</genome_strand>
        <mrna_strand>ATTCAACTCCCTGCTGTTCTAAAATGTATTGTCAACACGCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCCATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAAATGAAAACCAATGGACCAGAAGAGCAGAGTAAAGTTCAAGATCATGAGCCCTCAGGGTGAANGGACCGATGGACTATGTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437521" ref_strand="+" ref_description="SGN-E437521 [cSTA-4-E11]">
      <seq>ccaaaattcaactccctgctgttctaaaaagtttgtcagctgtcaataaaggagacagcacgacgtcgtatctgaaatctccgaatttccggcgaaagttccttaattttcggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgactactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgttctcccggagcaattctcgcccccggtgagagcatgattgcaactgttttcaagtttgtagagcatccagaaaataatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79597" stop="76105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79297" g_stop="78904" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="461" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="543" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76405" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="580" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E437521" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79297" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGT-TCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAA</genome_strand>
        <mrna_strand>CCAAAATTCAACTCCCTGCTGTTCTAAAAAGT-TTGT---C-AGCTGTCAATAAAGGAGACAGCACGACGTCGTATCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTTCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACTACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTTCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATGATTGCAACTG...........................................................................................................................................TTTTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302379" ref_strand="+" ref_description="SGN-E302379 [cLEW-27-O8]">
      <seq>gcatttccaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79603" stop="76106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79303" g_stop="78904" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="470" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="552" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76406" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="588" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E302379" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79303" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAA</genome_strand>
        <mrna_strand>GCATTTCC-AAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460509" ref_strand="+" ref_description="SGN-E460509 [cPRO-31-D5]">
      <seq>aaaaagtattgtcagctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattncagtttgtagagcatccagaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79555" stop="76112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79272" g_stop="78904" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="518" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76412" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="548" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-E460509" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79272" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATA</genome_strand>
        <mrna_strand>AAAAAGTATTGT---CA-GCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTNCAGTTTGTAGAGCATCCAGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722455" ref_strand="-" ref_description="SGN-E722455 [FC17BC11]">
      <seq>tttttttttttttttttttttttttttttttttttttttaaagctgtactagttgtagttcattcactgtgaactatcaaatatacatgccctagccagtttaaaaaactcactggtctttccttatatatatatatacaaaaaccctaaacccaagactcagatgagtgtgtatatacatatatgacattttgtacaaaagactcattttgatgagtcaaagcagagcccctgatgagattaaggaccccagcaggtcaagaacatgacagtcctaaaagacttttccgcctgtttaatttttttagcctttgctgcttttatcagagcattggtatcaacacccccagagaatttccatgtttgccttgaagatgatccagcaccagcaccccaagacgagtccttaagagttttgattccaccgtcaccttgtcttgttgcttgatgatcctttaccccttgatgaatcaccctcatcacaccttgatgcactttactgatcatgtaacaactagttttttttttttaatcaagacgattctgttttgtaaaatttccaagtgtaatggaacgatatatatagaggaactcatcaattcggccgattggccgccaatcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="66246" stop="84997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81576" g_stop="81618" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.698"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81619" i_stop="84132" i_length="2514">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84133" g_stop="84687" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="598" r_length="555" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E722455" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81576" e_stop="81618"/>
          <exon e_start="84133" e_stop="84687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTTTCTAAACTTTTTATATTTTCTGTTTTTTCAAGATTCTAAGTTTAAGTTAAAAGTTTTCTTTGTTAAGTGGATATCACTACTTGTTATTCATTCTACGTAGTGGATTAAGTAAATGCAATTTGATTAGTGGATTAGGTTTCATAAATTCAAATTAAGTTGACTAATTCCATATTTCCATTAGTGGAAATGTAATTAATTCAGTCCAAGAAGGAAAAATAATGTCAAATATTCAAATTTTCTGCTGCTTAGACCAGCACAAATGCGTGTTTAATTTTTGTTTAAACTATTTCTACATGTGTTTCTTTCATTTTTTTTTTCAATGATCATTAATCCAAATCCAATTATGACTTGTTCTCTTCAGTAATTTTAGGATTGGATCTGACCGTTGGAACTTTTTGTCAAGATTATTGAAGAATGTGGACAAGTTACCTGAAAATGATTTTCGTTTTAAATATTCCCTTAATCCCCAAACTTATAGCCTAATCTTAAATATTTTAGGTTTGGCAAACATAAAAATTATGTTTGTTATGGCTATTAATATGTATATTTCTGCATACATATATAAAAGAATCAATTGTATAATATATTTCGGTATATAAATACAAAAGTATTAATTGTATAATATATGTTTTATAAATCAAGAAAGAGGGAAAGATAAGTAAAACTAGGTAGGAAAAAAATTGTATCTGTATAATTATAAGTGCATATGACGAAAATATATGTATTTGTATTTTATATATAATTTTCTCTCGTTTTATACAAACACAAACACAACTTATACATTTGTATTTATATATAGTGAGAGAGGCGAGCGAGATTCTATAGGGAGAGAAAAAGATATATATATATATATATATATATATATATATATATATACAGTTTTGTCTCGCTTTATACAAACAGAAACACATTTTATATATTTGTGTTTATATAAAGTGAGTGAGGCAAGAAAAAAACTGTCCAGTGAAAAATCGAGAATGGCAAGCAAGAAACTCAGACAAATGCTAATTGTTTACTACGTATTATAATTAAATCAAATTGTGAATATGATATAATTTGAATAAATAATTTGTTATTTTATATGATTTTTTCAATAATCAATGTTGATGTTAATAATTGTGGTTTGTGGCCTCGGTGGCCGAATAATGTTTACAATTTTGGGCTTATCTGATCTTTTTATTAGAGCAATTTATATGTACTTGTCAAAGCTTTATAATCTTCATGCTTGTATGAATATAATACTCGTGTCATAAGTTGTTTCAATGAAATTTGAGATGTGACAAAAGTAATAGAATTACTGTTTAGGGAAAATTGTATAGAATAGCAAATTAATAATTTAAAATAAATAAAGTAGTTAGGGTTTGATTTAATTGTGCTCCATAGCAAAAGTTAGCTAAAGTTTGCCAGACGTCTCTCTCCCAAAAATCTTGCTCGCCACTCTCCATTCTCGCTCGCCTCTCGCTTTATACACAGAAGTAAATATATATCTTCGTGTTATACATTTAATTATACAATTTACAAAATTTTTACTTCAAACATTGCAGAGTAAAAGGCCAACAAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTTTGTTTTTGTATAGAGCGAGAGAAAAACATATATATTCTTGCTATACACTTATAATTATGCAATATACATACATTTTAATTCGATTCAACTGTATGCAAAGCAAATTTTATAAAAATATTGTAACAAAATAGGCAGCGAATTATACAATTGTGCATTATACAATCGCAGTGACATAGGATAACGAATTATACAATTGTATATGTATAGTGAATTATATAGTTTTATGTTTGCTATGGAACGCAATTATGCAAACTTTGTTATAACATATAAATATGAATTTTTTTTTGCTTTATGTAAAAGCTGCCCTACTTTTTAACCCACGAAAACACTGTTTAAAAGAAAATTCACAAAAACAAAATTGAAAATATCGTTCCTCAACAAGACGGAGATAAAATTGGGCTAGAGGTTGGTCCAGCACACCATGCTACACACAAGGCCCAAATATATATATATATATATCTTCAAATAAAATAAAATTAAAAAAATTGGATTGTAAACCTAATGTTTTTTTAAAAAAAATATAGAATATGGTGTATGCTTACCATGAAAATGATAAGATACAAAATAAAATATTATTATTTATTTTTTATTATAAATAAGCAAAGACAAAAATAGAAAAAATTAAGATAATGATGTAATTATATCAAAATCAATCTATTCCTAAAATGATTATTATATGTACCCTACTTATATTATTTAGTTTTTCACCTGATATATGTTACTCCATATTAGAAATTGACTAATTTAAATTCGCGCTACATAATTAGAATTTTCTCTTTAAATCTGATACCTTTTGATTAAAAAAATAATACTTCATCTATTGCGTCATTTCAATTCTTCGTGCCCTAAATCTAAATAAATATTTTACTGAAAACTAATGAAATAACACAAATCAATAGCTAACAACAATCGAAAAAGCTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCACTAGCCAGTCTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCACTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTCTTCCGCCTGTTTAATCTTCTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCACCAGAGAATTTCCATGTCTGCCTTGAAGATGATCCAGCACCAGCACCACAAGACGAGTCCTTAAGAGTCTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTCTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCCCTAGCCAGTTTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCCCTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTTTTCCGCCTGTTTAATTTTTTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCCCCAGAGAATTTCCATGTTTGCCTTGAAGATGATCCAGCACCAGCACCCCAAGACGAGTCCTTAAGAGTTTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTTTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316287" ref_strand="+" ref_description="SGN-E316287 [cTOA-23-H24]">
      <seq>tccaccactttccaccattactcttcaagcaaacaaatttaacccaggtacatttcgcaaaaatagttgtacattccaggaataacaactaacaactacctgtcttgactccaatttcatagcctttatggatcttctacgttactccgcctcccgctatcctgcagctcatcttcaacttcccttccgtacgccacttcgccggcggttcgtcgccgttaggtcaagtttgagccttccgttcgcggagcagaaagctaagtattatagcgagctcgaagctgctgttgatgttgtcgagcgagcttgtcgtctctgcgttgacgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctttggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggataaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctggatcctattgatggtacacgagggtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86967" stop="90042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87267" g_stop="87488" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="325" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="428" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="89060" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="637" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89061" i_stop="89706" i_length="646">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89707" g_stop="89742" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="673" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E316287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87267" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="89060"/>
          <exon e_start="89707" e_stop="89742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTGTCATTAATATCTCCTGAGAAACATTTCAAGAGGTTATCGAACAGGTCATGGTGGGGGGGGGGGGGGGAAGGTTGGATGGATGGTAGAATATATGGAAACAGTTTCCTTCCCTTGGATAACCTTCGTTTAGTTGAAAATACATCTTCTTTTGTACATAAACTTTTACCAGACCAAGGGTAATATTTTTAAGGCCCTATTCACTTCTATCAATATGACATCAGGAAATACTTCCTTGTCTGTCTTTACTCTGTATTTTGTGATTAAAATAAGTTAACTTTTATCGTCCATGCCCTGAACAGCTGACAAAAAGGCATGTTTGCAGTTTATACTTGCATAGTTACTTGGGCTGCACTCATAAATTTCCAACCTCGTACAGATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</genome_strand>
        <mrna_strand>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447016" ref_strand="+" ref_description="SGN-E447016 [cSTA-24-I1]">
      <seq>cttcaagttaacaaatttaacccaggtacatttcgcagtaataggggtaccattccaagaataacaactaacaactacctgacttgactccaatttcattgcctttatggatcttctccgttactccccctcccgcttccctgcagctcatcctcaacttcccttccctaccccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgtggagcagaaagacaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggataaagcaactttaggagatgaagtaacagaagataatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86989" stop="89297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87289" g_stop="87488" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="304" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="407" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="88997" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="553" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E447016" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87289" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTA-CATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTG</genome_strand>
        <mrna_strand>CTTCAAGTTAACAAATTTAACCCAGGTACATTTCGCAGTAATAGGGGTACCATTCCAAGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATCTTCTCCGTTACTCCCCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCCTACCCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGTGGAGCAGAAAGACAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472986" ref_strand="+" ref_description="SGN-E472986 [cSTB-30-N3]">
      <seq>aagtaaacagatttaacccaggtccatttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86993" stop="89248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87293" g_stop="87488" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="299" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="88948" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="499" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E472986" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87293" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="88948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGT</genome_strand>
        <mrna_strand>AAGTAAACAGATTTAACCCAGGTCCATTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413974" ref_strand="+" ref_description="SGN-E413974 [STM-18-P21]">
      <seq>aagtaaacagatttaacccaggtccatttcgtagtaataagttgtacattccaggaaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtangattcttgagaaaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86993" stop="88781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87293" g_stop="87488" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="301" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88481" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="353" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E413974" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87293" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAAT-AGTTGTACATTCCAGG-AATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACC</genome_strand>
        <mrna_strand>AAGTAAACAGATTTAACCCAGGTCCATTTCGTAGTAATAAGTTGTACATTCCAGGAAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTANGATTCTTGAGAAAAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412347" ref_strand="+" ref_description="SGN-E412347 [STM-16-K7]">
      <seq>tttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtctcccacagccgacacttctctgcatatcttttttttcttcagttattgaattcatataattcgacctcaattagtttgagactgagacacaaattgattgatatatgagtgtgctttttcttcttccaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87019" stop="89233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87319" g_stop="87724" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="508" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88852" g_stop="88933" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="590" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E412347" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87319" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="88933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATA--TTTTTTTTCTTCAGTTGTTGAATTCGTAT-ATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</genome_strand>
        <mrna_strand>TTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAGGTCTCCCACAGCCGACACTTCTCTGCATATCTTTTTTTTCTTCAGTTATTGAATTCATATAATTCGACCTCAATTAGTTTGAGACTGAGACACA-A---ATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470458" ref_strand="+" ref_description="SGN-E470458 [cSTB-18-G8]">
      <seq>tttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtctcccacagccgacacttctctgcatatcttttttttcttcagttattgaattcatataattcgacctcaattagtttgagactgagacacaaattgattgatatatgagtgtgctttttcttcttccaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87019" stop="88837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87319" g_stop="87724" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="508" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E470458" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87319" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATA--TTTTTTTTCTTCAGTTGTTGAATTCGTAT-ATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG</genome_strand>
        <mrna_strand>TTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAGGTCTCCCACAGCCGACACTTCTCTGCATATCTTTTTTTTCTTCAGTTATTGAATTCATATAATTCGACCTCAATTAGTTTGAGACTGAGACACA-A---ATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476136" ref_strand="+" ref_description="SGN-E476136 [cSTB-43-O4]">
      <seq>cttccctgcagctcatcctcagcttccctttcgtacgccacttcgccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaagccaagtattatagcgagctcgaagctgctgttgatgttgtcgagcgagcttgtcgtctctgcgttgacgtgaagaagtcactgttctcaagtgatggtagaattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctttggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggaaaaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87123" stop="89362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87423" g_stop="87488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="169" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="272" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="89060" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="481" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89061" i_stop="89323" i_length="263">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89324" g_stop="89330" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="487" r_length="6" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E476136" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87423" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="89060"/>
          <exon e_start="89324" e_stop="89330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTG</genome_strand>
        <mrna_strand>CTTCCCTGCAGCTCATCCTCAGCTTCCCTTTCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGAATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGAAAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG.......................................................................................................................................................................................................................................................................-ATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433131" ref_strand="+" ref_description="SGN-E433131 [STM-58-E9]">
      <seq>ggaaatctttacccttgtcaggtttatttgatgcaaaaacagactctgagaacataagagaagggaacatacttcttctgtctgcatgctgtgggagtttgtgcaaatatctgatggtggcttctggtagagcatcggtttacattcaggggaagaaggcgacatctattatcaaggtctgggaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtaactaatgggagcttacatagcaagattattggaatgatctcttcaaattcatcagttctttgacattctttttggcattattgtgacaaatcaatagtcagatactaatgaagatttccgccaattcatcaattgttaatgatacttgcattcttttgacgaatcacagcatatagcagtatacatatcaatgtctctccgttttcttcctcctcgtagtcatcagtatctctctgttgtttctcatcaatacttgtatctttcctctttcggtctctatggacagataatatactgaaatggtgtggagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="90513" stop="98647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90813" g_stop="90909" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90910" i_stop="92125" i_length="1216">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92126" g_stop="92204" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="176" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92274" g_stop="92324" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="227" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97989" g_stop="98331" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="569" r_length="342" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E433131" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90813" e_stop="90909"/>
          <exon e_start="92126" e_stop="92204"/>
          <exon e_start="92274" e_stop="92324"/>
          <exon e_start="97989" e_stop="98331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACGGACTCTGAGAACATAGGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAGGTGAATCATTCTTCTCAATTTTTTTTCCTCATATTCTTAACATACGTGAACCTAGATAATTATGAAATGATACGTAGTGATCTGATGTGAAAAGAAAGGATGCTTAGATTTGTGGTGTGAAATCTTTCTTTCCTTCTGTTCGCAGTCGTGAAAGTTTTTACCTCTATAGGGCTCCAATTTGGTTGATGAGATTCAATACAGAGGGGATTGATGATGAAAATAAAAATAAATGGGATACAATGATTTCCTTTGCAAATTGGACCTAGATAAAGATTGGGCTGGGGAAAGGTTGAGGTGATCAATCAAGAGCATCGTTCTAGGATTTCATTTGTTCCAGCAAGTATTAGCTTGCTTTATCTTTTAAGTTGCTTCACTTGTTCTAGGAATGCAAGCTTGCTTTCTCTTCTAAGTAATTGCAGTTGTTCTGGGAATGCCTTTACTATGATGCCCAACAACTCTTTTCTTACAGTAGGCTAGGCTGGTAAAACTTTTTGGTGCCTGTGAGTTGAACATCACTCAGTAGATACATATTCTGTAAACTGCAGGTCATGGTCTTGTAGTTACTGAGTAAGTATGTTCATTGCGTCTTGATGATGTGCAGTTCAGCAACATGAAGTTTTCTGCTGGCTTTGTGCATTATTGGAATGTTATTCAGTACCTTAAAAAATTAAAGCTGCTTGCGGTTGCATAACCTCTAATTTTGTCTTCATTTTCCCCCTTGTATTTGACTCGAAAAAATATAGCATGTGCTGTTGTTAGATCTGAAAACACACAACCTGCGGTTCTTCTTAGTTTGTACATATACTAATCCCACACCATTCTCTTATATATGTTTATGTTTAGAATTTGATGAGGCATTGTAACATCACAAACCTCTTCTCCAAATGAAACTAGCTTTATGATAAACTTATGCTTTGAAGTTGGAATTTGGACTGGCACTCGGCAACAATCGTCAACTTAATACAGAAGAGGCTTGTCATTCACATCCAGAAGAGATTGAGTGCTCTATTTAATACTTTAGGAAACAGAGTGCCCTCAGAACCATTCTTCAAGTGATTATAAAATTCATTTCCCTTTTAGCCTGAACAGCTGAGTTGTAATTACTTTTGTATTGTCTTCTTTCTTCTTCTTTTACGGCCGCAATCAAATTAGTATTTCAATTTCATGATGGTTTTTGCACATTTGTTCTATTCAATTTTTGTTTCTAAATTTACAGTTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGC-TTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCT</genome_strand>
        <mrna_strand>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACAGACTCTGAGAACATAAGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCGGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTAACTAATGGGAGCTTACATAGCAAGATTATTGGAATGATCTCTTCAAATTCATCAGTTCTTTGACATTCTTTTTGGCATTATTGTGAC-AAATCAATAGTCAGATACTAATGAAGATTTCCGCCAATTCATCAATTG-TTAATGATACTTGCATTCTTTTGACGAATCACAGCATATAGCAGTATACATATCAATGTCTCTCCGTTTTCTTCCTCCTCGTAGTCATCAGTATCTCTCTGTTGTTTCTCATCAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417843" ref_strand="-" ref_description="SGN-E417843 [STM-26-A8]">
      <seq>atggtggcttctggtagagcatcggtttacattcaggggaagaaggcgacatctattatcaaggtctgggaccacgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgttactaatgggagcttacatagcaagattattggaatgatctcttcaaattcatcagttctttgacattctttttggcattattgtgacaaatcaatagtcagatactaatgaagatttccgccaattcatcaattgttaatgacacttgcattcttttgacgaatcacagcatatagcagtgttatatcaatgtctctccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91842" stop="98562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92142" g_stop="92204" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92274" g_stop="92324" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="114" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97989" g_stop="98278" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="402" r_length="288" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E417843" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417843" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92142" e_stop="92204"/>
          <exon e_start="92274" e_stop="92324"/>
          <exon e_start="97989" e_stop="98278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGC-TTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCAT</genome_strand>
        <mrna_strand>ATGGTGGCTTCTGGTAGAGCATCGGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCACGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTTACTAATGGGAGCTTACATAGCAAGATTATTGGAATGATCTCTTCAAATTCATCAGTTCTTTGACATTCTTTTTGGCATTATTGTGAC-AAATCAATAGTCAGATACTAATGAAGATTTCCGCCAATTCATCAATTG-TTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGCAGTGT-TATATCAATGTCTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378230" ref_strand="+" ref_description="SGN-E378230 [TUS-45-I6]">
      <seq>agttcagggagaagaaggcgacatctattatcaaggtcttcgaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtgactaatgggagcttacatagcaagattatcgaaatgatctcttcaaattcatcagttctttgacaggcttttggcattattgtgacaaaatcaatagtcagatactaatgaagatttcctccattcatcatttgtttaatgacacttgcattcttttgacgaatcacagcatatagaagtatacatatcaatgtctctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91873" stop="98580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92171" g_stop="92204" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92274" g_stop="92324" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="86" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97989" g_stop="98279" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="376" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E378230" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92171" e_stop="92204"/>
          <exon e_start="92274" e_stop="92324"/>
          <exon e_start="97989" e_stop="98279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAGGG-GAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATT</genome_strand>
        <mrna_strand>AGTTCAGGGAGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTTCGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCC-ATTCATCATTTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296818" ref_strand="+" ref_description="SGN-E296818 [cLET-26-F21]">
      <seq>tcaggggaagaaggcgacatctattatcaaggtctgggaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtgactaatgggagcttacatagcaagattatcgaaatgatctcttcaaattcatcagttctttgacaggcttttggcattattgtgacaaaatcaatagtcagatactaatgaagatttcctccaattcatcaattgtttaatgacacttgcattcttttgacgaatcacagcatatagaagtatacatatcaatgtctctccattttcttcctcctcgtactcatcagtatctctctgttgtttctcataaatacctgtatcgatcttctttcatctgtatggaaggataatattggtggagaatgattcatgactgcagtctancttataaatcaatgttctttttgtttcttcccttcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91874" stop="98740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92174" g_stop="92204" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92274" g_stop="92324" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="82" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97989" g_stop="98440" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="534" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E296818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92174" e_stop="92204"/>
          <exon e_start="92274" e_stop="92324"/>
          <exon e_start="97989" e_stop="98440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</genome_strand>
        <mrna_strand>TCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGATCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTANCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="95096" stop="96344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95396" g_stop="96044" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95396" e_stop="96044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="95097" stop="96081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95397" g_stop="95781" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95397" e_stop="95781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="95755" stop="97150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96055" g_stop="96850" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96055" e_stop="96850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTA-----T-C------TAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701526" ref_strand="+" ref_description="SGN-E701526 [FA16AH06]">
      <seq>cttgttttatatattataataacagcttttcccccaaaacttgtgtcaatataattgaaaaatacattggtggattcctagcagaagcaaagaaaaaaaaatcaccaggagatgttttctcaacttacttaagcctgggaggcaagagttacttggtacatgtgttggtggaagttagcaagtagccagctaggtgcatacaagctggccagacaccatgtgaaggtaccagacaatggtaacataatatactaaccagttcagatacatatccactggtcctttcaccttgaggctcataattttgagcttcacttcagctcactcttttgatccttcggtttttcatttttatctggatgctctgcaaatttgattactatgacattgacttaagaaaatctgaacaaaatacttgcatgacacaattactcagctacaaatagacaaaaacaacttgaaagagaaggacataaactaagagtgaagaacattaccagcagctatcatcagtgaggacgcatgaagcagttcttggtccagttgtttggaactaatgcactgcagttgacagcaacaagtcagcaaccatgtatgcacattaatgtgtgtacacacgtcaatacatattctcaaaagagtttcaagccagagtgacactaaaagaaagaggagctagaacagagcgaggttgccaaaacggaagagagacatgaaatcatggtaattttgtcaaccttgaaatgtacttgagaccttttttatatagccaagaaaaatccgggggccgcggcgtatggttaaaccttgttgtttggtggacaatggacccgctcctctactcttctacacttaaatactaggcttttgtctgtcggggattcaaactccttatgtgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98908" stop="100410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99208" g_stop="100110" g_length="903"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="903" r_length="903" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E701526" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99208" e_stop="100110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAACTCCTTATGTGCAACT</genome_strand>
        <mrna_strand>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGGGGATTCAAACTCCTTATGTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367268" ref_strand="+" ref_description="SGN-E367268 [cLPT-5-F17]">
      <seq>aagaacttttttccttgatttcaggatttcttatttgtgcctctaactgttaagctttctttctccaccaaaattgctgcaactatagagatattagtgctggtaggcatctttcagatacttatttcattgtgtacaatgggtttcttcaaaagtcatgttcactagaataatattctggaggagggggagtctatgcgatattttggtgtctgctattcttcaatgtcagtccacatatctgaaactatttgagcagagttcataatacctgaaactatttgatcaggatattgattaaattagttgtcttcgagttgcttatataacatcagattcttgttatacttgaaaaagcttataatccacagttcgttacttgacctctgtgaccacacattatttcagttattgaaatccatctaagatgattatatttgtcattgatctgcttgattagtcttgtgaagcaacaccaaataccaacacacccttcttctgtgaaggaaatttgttttttagcagtattttgttattagcttatgtggaattatcattatcttattcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="109640" stop="110809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109940" g_stop="110509" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E367268" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109940" e_stop="110509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTC---C-CCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</genome_strand>
        <mrna_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGCCTCTAACTGTTAAGCTTTCTTTCTCCACCAAAATTGCTGCAACTATAGAGATATTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGG-TTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGAGTCTATGCGATATTTTGGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGCAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTGCTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACCTCTGTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCAACACCAAATACCAACACACCCTTCTTCTGTGAAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTTATTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550031" ref_strand="+" ref_description="SGN-E550031 [TUS-5-P5]">
      <seq>ttgattacattcaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaattcaagatttttcaactataagtacaaccccatgtgttccattttctagtcatgaagctcaactcatgcagccaccaattacaacaaaaatagaggatttctcatcagatcttngaaactttggtaactcacnaaataattgtcaagttattaatgatgatgagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="122635" stop="124213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122935" g_stop="122991" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123089" g_stop="123218" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="186" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123372" g_stop="123913" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="728" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E550031" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122935" e_stop="122991"/>
          <exon e_start="123089" e_stop="123218"/>
          <exon e_start="123372" e_stop="123913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</genome_strand>
        <mrna_strand>TTGATTACATTC-AAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTNGAAACTTTGGTAACTCACNAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390563" ref_strand="+" ref_description="SGN-E390563 [TUS-44-G23]">
      <seq>ttgattacattcaaatacatggatatggtaattggaggactcttccaaagagtgctgggcttcagagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaaaaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacagcacatgtccacgtcttgatcttcttgatctttcttccattttaaagcattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaatttcagatttttcaactataagtaccaccccatgtgttccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="122635" stop="124089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122935" g_stop="122991" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123089" g_stop="123218" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123372" g_stop="123789" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="607" r_length="420" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E390563" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122935" e_stop="122991"/>
          <exon e_start="123089" e_stop="123218"/>
          <exon e_start="123372" e_stop="123789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACA-CACA-GTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTT</genome_strand>
        <mrna_strand>TTGATTACATTCAAATACATGGATATGGTAATTGGAGGACTCTTCCAAAGAGTGCTG.................................................................................................GGCTTCAGAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAAAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACAGCACATGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAAGCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTTCAGATTTTTCAACTATAAGTACCACCCCATGTGTTCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231349" ref_strand="+" ref_description="SGN-E231349 [cLED-10-D22]">
      <seq>tgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="122636" stop="123974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122936" g_stop="122991" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123089" g_stop="123218" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="186" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123372" g_stop="123674" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="489" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E231349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122936" e_stop="122991"/>
          <exon e_start="123089" e_stop="123218"/>
          <exon e_start="123372" e_stop="123674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</genome_strand>
        <mrna_strand>TGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390797" ref_strand="+" ref_description="SGN-E390797 [TUS-44-G23](-)">
      <seq>acttgattcaacaatatcagcagcccaactagtgaagatgaaagagataggtagtgcagcaacatgttgaactttgataatattccaaatatctgggatactattaatgaatttatgtaatttttacgcttttttttttttaaaggaacaaacaaacagttcgaaagaggtgttttattttttttttttacctgtgagcttttggacatgttgttgtttcctgaaaaacaaaaaacaaaaaaaaaaggttacttcttttagtttagtgcataatttttattttgtagaccttatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="123778" stop="124676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124078" g_stop="124384" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E390797" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124078" e_stop="124384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTTGACCTTATTTCTATCACGAGT</genome_strand>
        <mrna_strand>ACTTGATTCAACAATATCAGCAGCCCAACTAGTGAAGATGAAAGAGATAGGTAGTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTATTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTGTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTAGACCTTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550388" ref_strand="+" ref_description="SGN-E550388 [TUS-5-P5](-)">
      <seq>taatttttacgcttttttttttttaaaggaaccaaacaaacagttcgaaaagaggtgttttattttttttttttacctctgagcttttggacatgttgttgtttcctgaaaaacaaaaaacaaaaaaaaaaggtgacttcttttagtttagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="123895" stop="124648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124195" g_stop="124348" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-E550388" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124195" e_stop="124348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTACGCTTTTTTTTTTTTAAAGGAA-CAAACAAACAGTTCG-AAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCAT</genome_strand>
        <mrna_strand>TAATTTTTACGCTTTTTTTTTTTTAAAGGAACCAAACAAACAGTTCGAAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTGACTTCTTTTAGTTTAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>75</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14915" PGL_stop="17546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14915" e_stop="15070"/>
            <exon e_start="15222" e_stop="15355"/>
            <exon e_start="16595" e_stop="16874"/>
            <exon e_start="17133" e_stop="17339"/>
            <exon e_start="17482" e_stop="17546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.821"/>
          <exon-intron don_prob="0.995" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.971"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.821">
            <gDNA_exon_boundary e_start="14915" e_stop="15070" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15222" e_stop="15355" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.916">
            <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16595" e_stop="16874" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="17133" e_stop="17339" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="17340" i_stop="17481" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="17482" e_stop="17546" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14915" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14960" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14977" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17339"/>
              <exon start="17482" stop="17546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14978" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14981" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTACATGACTCATTTTAACTCTTCACATTCCCATTTCATAGGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG : GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG : TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG : AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAG : GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</gDNA_template>
            <first_frame> R  T  Y  M  T  H  F  N  S  S  H  S  H  F  I  G  K  K  K  R  S  L  N  H  V  P  F  F  S  L  I  L  L  H  L  H  V  L  F  Q  Q  L  T  P  R  S  Q  Q  Q  L  S  Q  :  V  K  R  R  L  L  G  E  I  A  *  V  E  R  K  M  Q  R  V  T  V  I  E  R  F  S  K  T  F  R  D  N  P  S  L  S  K  L  L  I  V  F  T  V  S :   G  G  G  L  V  A  Y  S  E  A  G  K  S  N  D  N  S  N  A  G  A  L  V  E  A  N  N  R  K  K  K  V  V  V  L  G  T  G  W  A  G  T  S  F  L  K  N  L  K  D  P  S  Y  D  V  Q  V  I  S  P  R  N  Y  F  A  F  T  P  L  L  P  S  V  T  C  G  T  V  E  S  R  S  V  V  E  P  I  R  N  I  I  R  K  :  R  Y  A  E  A  Y  Y  W  E  A  E  C  I  K  I  D  P  E  N  K  K  V  Y  C  R  S  N  L  S  T  N  G  N  G  K  E  E  F  A  V  D  Y  D  Y  L  V  I  A  T  G  A  R  V  N  T  F  N  I  P  G  V  E  E  N  T  F  F  L  K  :  E  V  E  D  A  Q  K  I  R  R  T  V  I  D  C  F  E  K  A  S  L   </first_frame>
            <second_frame>  E  L  T  *  L  I  L  T  L  H  I  P  I  S  *  G  K  K  K  E  A  S  T  T  F  P  S  S  H  *  F  F  S  I  F  T  F  S  F  N  N  S  H  H  V  R  N  S  N  S  L  R :   *  R  E  G  C  *  V  R  S  R  K  L  N  A  K  C  R  E  *  R  *  L  R  D  F  L  K  L  S  V  I  I  L  P  F  L  S  S  S  L  F  S  L  S   : V  V  E  V  L  W  H  T  P  R  Q  E  N  R  M  T  I  Q  M  L  E  H  W  L  R  P  T  T  E  K  R  K  L  L  S  L  E  L  V  G  L  E  P  V  S  *  R  I  *  R  I  L  H  M  M  S  K  *  Y  L  Q  E  I  T  L  H  S  P  L  C  F  Q  V  L  H  V  A  R  *  K  V  A  V  L  L  N  Q  F  V  T  L  S  E  R :   D  M  Q  R  P  I  T  G  K  L  N  V  S  K  L  I  Q  K  T  R  R  Y  I  V  D  Q  I  *  A  P  T  E  M  G  R  K  S  L  Q  *  I  M  T  I  L  S  L  P  L  E  P  V  *  I  H  S  T  F  L  V  L  K  R  T  P  S  S  *  R :   K  *  K  M  L  K  R  S  V  E  L  L  L  T  V  L  R  K  Q  V  C  </second_frame>
            <third_frame>   N  L  H  D  S  F  *  L  F  T  F  P  F  H  R  E  K  K  K  K  P  Q  P  R  S  L  L  L  I  D  S  S  P  S  S  R  S  L  S  T  T  H  T  T  F  A  T  A  T  L  S   : G  E  E  K  V  A  R  *  D  R  V  S  *  T  Q  N  A  E  S  N  G  D  *  E  I  F  *  N  F  P  *  *  S  F  P  F  *  A  P  H  C  F  H  C  Q  :  W  W  R  S  C  G  I  L  R  G  R  K  I  E  *  Q  F  K  C  W  S  I  G  *  G  Q  Q  Q  K  K  E  S  C  C  P  W  N  W  L  G  W  N  Q  F  L  E  E  S  E  G  S  F  I  *  C  P  S  N  I  S  K  K  L  L  C  I  H  P  F  A  S  K  C  Y  M  W  H  G  R  K  S  Q  C  C  *  T  N  S  *  H  Y  Q  K   : E  I  C  R  G  L  L  L  G  S  *  M  Y  Q  N  *  S  R  K  Q  E  G  I  L  S  I  K  S  K  H  Q  R  K  W  E  G  R  V  C  S  R  L  *  L  S  C  H  C  H  W  S  P  C  K  Y  I  Q  H  S  W  C  *  R  E  H  L  L  L  E   : G  S  R  R  C  S  K  D  P  *  N  C  Y  *  L  F  *  E  S  K  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15255" stop="15355"/>
                    <exon start="16595" stop="16874"/>
                    <exon start="17133" stop="17339"/>
                    <exon start="17482" stop="17544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERKMQRVTVIERFSKTFRDNPSLSKLLIVFTVSGGGLVAYSEAGKSNDNSNAGALVEANNRKKKVVVLGTGWAGTSFLKNLKDPSYDVQVISPRNYFAFTPLLPSVTCGTVESRSVVEPIRNIIRKRYAEAYYWEAECIKIDPENKKVYCRSNLSTNGNGKEEFAVDYDYLVIATGARVNTFNIPGVEENTFFLKEVEDAQKIRRTVIDCFEKASL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17664" PGL_stop="20932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17664" e_stop="17732"/>
            <exon e_start="18637" e_stop="18856"/>
            <exon e_start="18950" e_stop="19054"/>
            <exon e_start="19485" e_stop="19757"/>
            <exon e_start="19857" e_stop="19978"/>
            <exon e_start="20264" e_stop="20383"/>
            <exon e_start="20477" e_stop="20932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17664" e_stop="17732" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17733" i_stop="18636" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18637" e_stop="18856" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18950" e_stop="19054" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19485" e_stop="19757" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19857" e_stop="19978" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20383" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.872" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="20477" e_stop="20932" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17664" stop="17732"/>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17666" stop="17732"/>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19757"/>
              <exon start="19857" stop="19925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19757"/>
              <exon start="19857" stop="19978"/>
              <exon start="20264" stop="20383"/>
              <exon start="20477" stop="20753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19605" stop="19757"/>
              <exon start="19857" stop="19978"/>
              <exon start="20264" stop="20383"/>
              <exon start="20477" stop="20930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19742" stop="19757"/>
              <exon start="19857" stop="19978"/>
              <exon start="20264" stop="20383"/>
              <exon start="20477" stop="20932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20574" stop="20926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20574" stop="20909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT : GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG : GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG : GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG : GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG : GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG : CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGCTG</gDNA_template>
            <first_frame> A  V  P  *  G  Q  R  S  G  E  D  N  T  S  *  G  N  R  S  Y  F  E  H  :  V  *  Q  K  N  Y  C  F  C  *  R  K  I  P  Q  R  W  Y  *  C  E  N  R  V  N  G  C  E  G  R  R  K  R  N  F  Y  Q  G  C  *  A  W  R  N  N  F  Y  A  L  W  N  G  C  L  V  Y  W  Y  W  N  S  S  S  N  Y  G  V  Y  E  A  H  W  S   : G  K  Q  T  S  V  S  N  R  *  V  A  A  C  *  G  T  G  E  R  I  C  T  W  *  L  C  N  N  Q  P  A  Q  S  H   : G  R  Y  C  C  Y  I  S  K  S  R  Q  R  *  L  W  N  T  Y  S  Q  R  I  S  G  S  P  *  *  H  M  *  K  I  P  A  G  G  A  L  L  E  K  *  K  N  E  *  S  C  R  S  L  E  R  I  E  R  *  W  C  *  R  V  D  *  G  G  H  *  R  I  *  I  C  S  V  P  S  G  Y  *  Y  E  E  S  S  S  N  S  S   : G  C  I  S  A  R  C  L  L  S  *  M  L  *  S  Y  G  G  M  *  K  K  S  G  R  S  S  S  V  *  R  R  R  P  P  S  L  S  P  I  Q  :  V  P  T  F  G  T  V  C  T  F  G  R  R  A  N  S  S  T  T  S  R  R  L  G  F  N  W  S  *  Q  S  V  A  M  V  F  C  V  C  *  :  Q  T  S  Q  L  A  Y  K  G  I  G  C  L  *  L  G  K  T  V  H  I  W  K  R  L  E  P  D  L  R  C  Y  A  P  V  D  L  S  *  N  S  I  R  L  L  P  K  V  F  *  C  E  S  *  R  I  C  L  F  N  S  F  T  K  Q  L  G  I  G  R  L  W  V  S  C  H  H  N  F  A  A  T  R  T  *  R  T  Q  F  S  I  I  A  S  *  *  R  *  N  E  H  L  *  E  G  C  *  I  V  I  *  I  I  P  Y  I  A  Q  V  F  Y  F  E  *  H  P  A  K  P  L  M  S  Q  C  L  M  E  Y  K  F  W  Y  F  L  D  E  V  T  K  S  L  L </first_frame>
            <second_frame>  L  Y  P  K  V  K  D  L  V  K  I  T  L  L  E  A  T  D  H  I  L  N  M :   F  D  K  R  I  T  A  F  A  E  E  K  F  H  R  D  G  I  D  V  K  T  G  S  M  V  V  K  V  G  E  K  E  I  S  T  K  D  V  K  R  G  E  I  T  S  M  P  Y  G  M  A  V  W  S  T  G  I  G  T  R  P  V  I  M  E  F  M  K  H  I  G  Q  :  G  S  R  R  V  L  A  T  D  E  W  L  R  V  E  G  Q  E  N  V  Y  A  L  G  D  C  A  T  I  N  Q  R  K  V  M  :  E  D  I  A  A  I  F  Q  K  A  D  K  D  N  S  G  T  L  T  V  K  E  F  Q  E  V  L  N  D  I  C  E  R  Y  P  Q  V  E  L  Y  L  K  N  K  K  M  S  N  L  V  D  L  L  K  E  S  K  G  N  G  V  K  E  S  I  E  V  D  I  E  E  F  K  S  A  L  S  Q  V  D  T  D  M  K  N  L  P  A  T  A  Q  :  V  A  S  Q  Q  G  V  Y  L  A  K  C  F  N  R  M  E  E  C  E  K  N  P  E  G  P  L  R  F  R  G  E  G  R  H  R  F  H  P  F  R :   Y  R  H  L  G  Q  F  A  P  L  G  G  E  Q  T  A  A  Q  L  P  G  D  W  V  S  I  G  H  S  S  Q  W  L  W  Y  S  V  Y  A  S :   K  Q  V  S  W  R  T  R  A  L  V  V  S  D  W  V  R  R  F  I  F  G  R  D  S  S  Q  I  *  G  V  T  P  Q  W  I  Y  L  E  I  P  L  G  C  Y  Q  K  F  F  D  V  N  P  N  G  F  V  C  L  I  L  L  P  N  N  L  A  L  V  V  C  G  F  P  A  I  T  I  L  Q  L  H  E  H  R  E  P  N  F  L  *  L  H  H  N  K  G  E  M  N  I  Y  R  R  D  V  K  L  *  F  E  L  F  H  I  L  L  R  C  S  I  L  N  N  I  R  L  S  L  *  C  H  N  V  *  W  S  I  S  F  G  I  F  W  M  K  *  L  N  H  C   </second_frame>
            <third_frame>   C  T  L  R  S  K  I  W  *  R  *  H  F  L  R  Q  Q  I  I  F  *  T   : C  L  T  K  E  L  L  L  L  L  K  K  N  S  T  E  M  V  L  M  *  K  Q  G  Q  W  L  *  R  *  E  K  K  K  F  L  P  R  M  L  S  V  E  K  *  L  L  C  L  M  E  W  L  S  G  L  L  V  L  E  L  V  Q  *  L  W  S  L  *  S  T  L  V  R :   E  A  D  E  C  *  Q  P  M  S  G  C  V  L  R  D  R  R  T  Y  M  H  L  V  T  V  Q  Q  S  T  S  A  K  S  W :   K  I  L  L  L  Y  F  K  K  Q  T  K  I  T  L  E  H  L  Q  S  K  N  F  R  K  S  L  M  T  Y  V  K  D  T  R  R  W  S  F  T  *  K  I  K  K  *  V  I  L  S  I  S  *  K  N  R  K  V  M  V  L  K  S  R  L  R  W  T  L  K  N  L  N  L  L  C  P  K  W  I  L  I  *  R  I  F  Q  Q  Q  L  R :   L  H  L  S  K  V  S  T  *  L  N  A  L  I  V  W  R  N  V  K  K  I  R  K  V  L  F  G  L  E  E  K  A  A  I  A  F  T  H  S   : G  T  D  I  W  D  S  L  H  L  W  E  E  S  K  Q  Q  H  N  F  Q  E  I  G  F  Q  L  V  I  A  V  S  G  Y  G  I  L  C  M  L   : A  N  K  S  V  G  V  Q  G  H  W  L  S  L  T  G  *  D  G  S  Y  L  E  E  T  R  A  R  F  K  V  L  R  P  S  G  F  I  L  K  F  H  *  A  V  T  K  S  F  L  M  *  I  L  T  D  L  F  V  *  F  F  Y  Q  T  T  W  H  W  S  F  V  G  F  L  P  S  Q  F  C  S  Y  T  N  I  E  N  P  I  F  Y  N  C  I  I  I  K  V  K  *  T  S  I  G  G  M  L  N  C  N  L  N  Y  S  I  Y  C  S  G  V  L  F  *  I  T  S  G  *  A  F  N  V  T  M  F  N  G  V  *  V  L  V  F  F  G  *  S  N  *  I  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17665" stop="17732"/>
                    <exon start="18637" stop="18856"/>
                    <exon start="18950" stop="19054"/>
                    <exon start="19485" stop="19757"/>
                    <exon start="19857" stop="19978"/>
                    <exon start="20264" stop="20383"/>
                    <exon start="20477" stop="20564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYPKVKDLVKITLLEATDHILNMFDKRITAFAEEKFHRDGIDVKTGSMVVKVGEKEISTKDVKRGEITSMPYGMAVWSTGIGTRPVIMEFMKHIGQGSRRVLATDEWLRVEGQENVYALGDCATINQRKVMEDIAAIFQKADKDNSGTLTVKEFQEVLNDICERYPQVELYLKNKKMSNLVDLLKESKGNGVKESIEVDIEEFKSALSQVDTDMKNLPATAQVASQQGVYLAKCFNRMEECEKNPEGPLRFRGEGRHRFHPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWVRRFIFGRDSSQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35315" PGL_stop="39204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35315" e_stop="35350"/>
            <exon e_start="35881" e_stop="36412"/>
            <exon e_start="37724" e_stop="38219"/>
            <exon e_start="39027" e_stop="39204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.812" acc_prob="0.930" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.962"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="35315" e_stop="35350" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.812" acc_prob="0.930">
            <gDNA_intron_boundary i_start="35351" i_stop="35880" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="35881" e_stop="36412" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36413" i_stop="37723" i_length="1311"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="37724" e_stop="38219" e_length="496"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38220" i_stop="39026" i_length="807"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="39027" e_stop="39204" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35315" stop="35350"/>
              <exon start="35881" stop="36412"/>
              <exon start="37724" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35320" stop="35350"/>
              <exon start="35881" stop="36338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37746" stop="38219"/>
              <exon start="39027" stop="39204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGTCCACATTTTTCACCACTCTCAAGACTGAG : TTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACTGCAA : GAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTTAGAGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTGAACAAGAACGTCACCTTGCCTCAGTTACAACGCCTGCTCGTCCGGGCACCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGAAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGTTTCTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGTCTGACTTTCCTCAACTTGAGCTATGAAACCATTAGGAGTGGTGAACTTTCGAAGCTTCTTCTTCATTGCCCAAATTTAAGGCGCCTTTGG : GTCTTAGACACTGTCAATGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAACTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACGGAGTCAGGCTTTATAGCTGTGTCTGCTGGTTGTCCTAAGCTTCAATATGTTCTCTATT</gDNA_template>
            <first_frame> K  V  S  T  F  F  T  T  L  K  T  E  :  F  F  L  R  W  K  *  I  R  A  *  K  N  R  G  N  L  *  I  Y  R  K  C  R  S  Y  L  S  Q  H  S  Q  M  R  C  W  R  R  C  C  L  L  F  S  L  I  K  T  E  I  Q  L  H  W  C  A  K  I  G  I  M  Q  S  V  G  Q  E  L  S  C  L  L  E  I  A  I  Q  L  L  L  R  L  *  Q  E  D  F  P  R  L  R  V  L  P  L  R  G  N  Q  D  F  L  T  L  I  W  Y  L  R  I  G  V  L  I  F  R  L  G  L  M  F  L  P  K  F  T  P  F  L  R  S  *  D  *  K  E  W  L  L  L  M  R  V  W  S  F  W  Q  N  H  F  L  D  L  R  L  C  H  C  *  V  V  T  V  L  A  L  M  G  S  V  A  L  L  L  T  A   : R  T  *  Q  S  W  T  F  R  R  M  A  W  M  I  F  L  V  V  G  *  V  V  F  R  M  T  L  H  H  W  R  C  L  T  L  P  V  *  T  L  R  S  V  K  M  L  *  R  D  L  S  V  D  A  N  H  *  G  F  *  R  *  T  R  T  S  P  C  L  S  Y  N  A  C  S  S  G  H  L  S  *  W  S  W  V  Q  D  A  F  F  Q  I  N  S  Q  V  G  S  M  K  N  L  K  V  H  S  A  T  A  N  I  C  T  L  F  Q  V  S  G  K  Q  I  V  D  I  Y  H  L  F  M  Q  P  V  L  V  *  L  S  S  T  *  A  M  K  P  L  G  V  V  N  F  R  S  F  F  F  I  A  Q  I  *  G  A  F  G :   S  *  T  L  S  M  I  R  G  *  R  L  L  E  P  A  A  H  C  L  K  N  C  E  S  F  L  L  T  L  L  K  R  I  W  T  M  E  *  R  S  Q  A  L  *  L  C  L  L  V  V  L  S  F  N  M  F  S  I </first_frame>
            <second_frame>  K  C  P  H  F  S  P  L  S  R  L  S :   F  S  *  D  G  N  E  S  E  L  E  K  T  E  G  I  C  R  F  I  E  N  V  G  V  I  S  V  S  I  P  R  *  G  V  G  E  G  V  V  S  C  S  V  S  *  R  Q  K  F  S  F  I  G  V  Q  R  L  V  *  C  R  A  L  D  K  N  *  A  V  Y  W  K  L  L  F  S  Y  S  *  D  C  S  K  K  I  S  Q  D  *  E  C  Y  P  *  G  E  T  K  I  F  *  L  *  F  G  T  *  E  L  G  C  *  Y  S  G  L  A  *  C  F  C  Q  S  L  P  L  S  *  G  V  E  I  E  K  N  G  C  Y  *  *  E  F  G  V  F  G  K  I  I  S  W  I  *  G  S  V  I  V  E  L  *  R  F  *  H  *  W  D  R  *  H  C  C  S  L  Q  :  E  L  D  R  A  G  H  S  G  E  W  H  G  *  Y  F  W  *  L  A  K  L  F  S  G  *  L  Y  I  T  G  G  A  *  L  C  Q  Y  E  H  *  D  Q  *  R  C  F  R  E  T  C  R  *  M  Q  I  T  E  G  S  E  G  E  Q  E  R  H  L  A  S  V  T  T  P  A  R  P  G  T  S  A  D  G  A  G  Y  R  M  L  S  S  R  S  T  H  K  S  A  V  *  R  T  *  K  C  I  Q  Q  L  Q  T  S  A  L  S  F  R  F  L  G  S  K  S  S  I  F  T  I  S  L  C  S  L  C  *  S  D  F  P  Q  L  E  L  *  N  H  *  E  W  *  T  F  E  A  S  S  S  L  P  K  F  K  A  P  L   : G  L  R  H  C  Q  *  *  G  V  R  G  C  W  N  Q  L  P  I  A  *  R  T  A  S  L  S  C  *  P  F  *  R  G  Y  G  P  W  S  D  G  V  R  L  Y  S  C  V  C  W  L  S  *  A  S  I  C  S  L   </second_frame>
            <third_frame>   S  V  H  I  F  H  H  S  Q  D  *   : V  F  L  E  M  E  M  N  P  S  L  K  K  P  R  E  S  V  D  L  S  K  M  S  E  L  S  Q  S  A  F  P  D  E  V  L  E  K  V  L  S  L  V  Q  S  H  K  D  R  N  S  A  S  L  V  C  K  D  W  Y  N  A  E  R  W  T  R  T  K  L  F  I  G  N  C  Y  S  V  T  P  E  I  V  A  R  R  F  P  K  I  K  S  V  T  L  K  G  K  P  R  F  S  D  F  N  L  V  P  E  N  W  G  A  D  I  Q  A  W  L  D  V  F  A  K  V  Y  P  F  L  E  E  L  R  L  K  R  M  A  V  T  D  E  S  L  E  F  L  A  K  S  F  L  G  F  K  A  L  S  L  L  S  C  D  G  F  S  T  D  G  I  G  S  I  A  A  H  C  K :   N  L  T  E  L  D  I  Q  E  N  G  M  D  D  I  S  G  S  W  L  S  C  F  P  D  D  F  T  S  L  E  V  L  N  F  A  S  M  N  T  E  I  S  K  D  A  L  E  R  L  V  G  R  C  K  S  L  R  V  L  K  V  N  K  N  V  T  L  P  Q  L  Q  R  L  L  V  R  A  P  Q  L  M  E  L  G  T  G  C  F  L  P  D  Q  L  T  S  R  Q  Y  E  E  L  E  S  A  F  S  N  C  K  H  L  H  S  L  S  G  F  W  E  A  N  R  R  Y  L  P  S  L  Y  A  A  C  A  S  L  T  F  L  N  L  S  Y  E  T  I  R  S  G  E  L  S  K  L  L  L  H  C  P  N  L  R  R  L  W  :  V  L  D  T  V  N  D  K  G  L  E  A  V  G  T  S  C  P  L  L  E  E  L  R  V  F  P  A  D  P  F  E  E  D  M  D  H  G  V  T  E  S  G  F  I  A  V  S  A  G  C  P  K  L  Q  Y  V  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35350" stop="36412"/>
                    <exon start="37724" stop="38219"/>
                    <exon start="39027" stop="39203"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLEMEMNPSLKKPRESVDLSKMSELSQSAFPDEVLEKVLSLVQSHKDRNSASLVCKDWYNAERWTRTKLFIGNCYSVTPEIVARRFPKIKSVTLKGKPRFSDFNLVPENWGADIQAWLDVFAKVYPFLEELRLKRMAVTDESLEFLAKSFLGFKALSLLSCDGFSTDGIGSIAAHCKNLTELDIQENGMDDISGSWLSCFPDDFTSLEVLNFASMNTEISKDALERLVGRCKSLRVLKVNKNVTLPQLQRLLVRAPQLMELGTGCFLPDQLTSRQYEELESAFSNCKHLHSLSGFWEANRRYLPSLYAACASLTFLNLSYETIRSGELSKLLLHCPNLRRLWVLDTVNDKGLEAVGTSCPLLEELRVFPADPFEEDMDHGVTESGFIAVSAGCPKLQYVLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39246" PGL_stop="39733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39246" e_stop="39733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="39246" e_stop="39733" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39246" stop="39733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</gDNA_template>
            <first_frame> H  N  C  P  N  F  T  H  F  R  L  C  I  M  S  P  G  Q  P  D  Y  L  T  N  E  P  M  D  E  A  F  G  A  V  V  K  T  C  K  K  L  Q  R  L  S  V  S  G  R  L  T  D  L  T  F  E  Y  I  G  K  Y  A  K  N  L  E  T  L  S  V  A  F  S  G  G  T  D  W  G  M  Q  C  V  L  D  G  C  S  K  L  R  K  L  E  I  R  D  S  P  F  G  N  A  A  L  L  S  G  M  G  K  Y  E  S  M  R  C  L  W  M  S  A  C  R  V  T  M  N  G  C  R  I  L  A  R  E  R  P  R  L  N  V  E  V  I  K  D  E  H  S  D  D  Y  A  D  K  L  Y  V  Y  R  S   </first_frame>
            <second_frame>  I  T  A  P  I  S  P  I  F  V  S  V  *  *  A  L  A  S  Q  I  T  *  Q  M  N  P  W  M  R  H  L  V  Q  W  S  R  L  V  K  S  S  R  G  F  L  F  L  D  G  *  L  T  *  P  L  S  I  L  G  S  M  P  K  T  L  R  H  F  Q  L  L  F  L  A  A  L  T  G  V  C  S  A  C  S  T  A  V  L  S  *  G  S  W  R  *  G  I  L  H  L  E  M  Q  H  F  F  L  E  W  G  S  M  N  Q  C  G  V  F  G  C  Q  L  A  G  S  P  *  M  V  V  E  Y  L  H  E  R  D  L  G  *  M  S  R  *  S  K  M  S  T  A  M  T  M  L  I  N  Y  T  S  I  V  L  </second_frame>
            <third_frame>   *  L  P  Q  F  H  P  F  S  S  L  Y  N  E  P  W  P  A  R  L  L  D  K  *  T  H  G  *  G  I  W  C  S  G  Q  D  L  *  K  A  P  E  A  F  C  F  W  T  V  D  *  P  D  L  *  V  Y  W  E  V  C  Q  K  P  *  D  T  F  S  C  F  F  W  R  H  *  L  G  Y  A  V  R  A  R  R  L  F  *  A  E  E  A  G  D  K  G  F  S  I  W  K  C  S  T  S  F  W  N  G  E  V  *  I  N  A  V  S  L  D  V  S  L  Q  G  H  H  E  W  L  *  N  T  C  T  R  E  T  *  V  E  C  R  G  N  Q  R  *  A  Q  R  *  L  C  *  *  I  I  R  L  S  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39246" stop="39731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNCPNFTHFRLCIMSPGQPDYLTNEPMDEAFGAVVKTCKKLQRLSVSGRLTDLTFEYIGKYAKNLETLSVAFSGGTDWGMQCVLDGCSKLRKLEIRDSPFGNAALLSGMGKYESMRCLWMSACRVTMNGCRILARERPRLNVEVIKDEHSDDYADKLYVYRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48971" PGL_stop="49925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48971" e_stop="49925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="48971" e_stop="49925" e_length="955"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48971" stop="49665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48987" stop="49547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49199" stop="49925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49314" stop="49833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</gDNA_template>
            <first_frame> F  F  H  P  K  S  L  S  N  S  P  E  S  S  L  L  R  P  H  L  A  G  E  W  N  S  G  K  T  N  E  I  H  H  V  Y  S  T  G  K  C  R  K  S  S  W  V  I  R  R  K  I  K  N  P  A  S  *  *  V  H  F  F  T  Y  I  S  F  V  F  N  Q  S  F  P  C  E  M  A  I  D  T  K  Q  A  *  R  A  S  F  E  F  I  C  Y  *  E  L  *  F  H  R  K  L  P  S  T  L  Q  L  P  S  G  H  Y  S  Y  P  Q  E  L  P  *  T  F  S  A  L  C  *  V  F  L  *  W  E  T  A  D  A  E  *  S  *  Y  S  F  Y  K  I  R  Q  S  Y  K  E  Y  F  *  D  L  L  S  W  F  A  Y  S  K  L  C  H  Y  C  S  K  A  Q  S  W  S  F  S  *  *  Y  Q  V  L  Y  *  G  F  V  V  K  G  Q  D  W  V  F  R  D  E  E  T  R  V  D  C  F  E  *  N  Y  S  R  R  *  *  V  C  *  S  C  N  *  N  *  *  P  C  F  C  V  S  E  F  S  *  F  A  R  R  *  S  S  R  R  S  S  *  G  I  I  C  N  S  R  V  S  I  F  *  K  L  F  D  F  C  W  N  N  F  P  F  D  *  S  F  G  V  W  D  W  V  E  *  R  I  C  H  Q  V  F  A  K  A  H  R  E  L  R  *  C  M  V  N  F  S  S  W  W  G  Y  C  F  </first_frame>
            <second_frame>  F  F  I  P  N  L  Y  L  I  R  R  N  L  H  F  S  D  H  I  S  P  E  N  G  I  Q  G  R  R  M  K  S  I  M  S  T  L  P  E  N  A  E  N  P  V  G  S  S  A  G  K  S  R  I  R  R  V  N  E  F  I  S  S  L  I  S  L  S  Y  S  I  K  V  F  P  V  K  W  Q  S  I  R  S  K  L  E  E  L  L  S  S  L  S  A  I  E  N  C  D  S  T  E  N  Y  P  P  L  C  S  S  L  Q  A  I  T  A  T  L  K  N  C  H  E  L  S  R  H  C  V  E  F  S  Y  S  G  K  L  L  M  Q  S  D  L  D  I  V  S  T  K  L  D  N  H  I  K  S  I  S  E  I  Y  S  L  G  L  L  T  Q  S  S  A  I  I  V  P  K  P  N  L  G  A  S  R  D  D  I  K  F  Y  I  R  D  L  L  S  R  V  K  I  G  S  S  E  M  K  K  Q  G  L  I  A  L  N  E  I  I  Q  E  D  D  R  Y  V  K  V  A  I  E  I  D  N  L  V  S  V  L  V  S  F  L  D  L  Q  E  D  N  L  Q  E  E  A  A  K  A  L  S  V  I  A  G  F  Q  S  F  R  S  C  L  I  S  A  G  I  I  S  P  L  I  R  V  L  E  C  G  I  G  L  S  K  E  F  A  T  R  C  L  Q  K  L  T  E  N  S  D  N  A  W  S  I  S  A  H  G  G  V  T  V  L </second_frame>
            <third_frame>   F  S  S  Q  I  S  I  *  F  A  G  I  F  T  S  P  T  T  S  R  R  R  M  E  F  R  E  D  E  *  N  P  S  C  L  L  Y  R  K  M  Q  K  I  Q  L  G  H  P  P  E  N  Q  E  S  G  E  L  M  S  S  F  L  H  L  Y  L  F  R  I  Q  S  K  F  S  L  *  N  G  N  R  Y  E  A  S  L  K  S  F  F  R  V  Y  L  L  L  R  I  V  I  P  Q  K  T  T  L  H  S  A  A  P  F  R  P  L  Q  L  P  S  R  I  A  M  N  F  L  G  I  V  L  S  F  L  I  V  G  N  C  *  C  R  V  I  L  I  *  F  L  Q  N  *  T  I  I  *  R  V  F  L  R  F  T  L  L  V  C  L  L  K  A  L  P  L  L  F  Q  S  P  I  L  E  L  L  V  M  I  S  S  F  I  L  G  I  C  C  Q  G  S  R  L  G  L  Q  R  *  R  N  K  G  *  L  L  *  M  K  L  F  K  K  M  I  G  M  L  K  L  Q  L  K  L  I  T  L  F  L  C  *  *  V  F  L  I  C  K  K  I  I  F  K  K  K  Q  L  R  H  Y  L  *  *  Q  G  F  N  L  L  E  V  V  *  F  L  L  E  *  F  P  L  *  L  E  F  W  S  V  G  L  G  *  V  K  N  L  P  P  G  V  C  K  S  S  Q  R  T  Q  I  M  H  G  Q  F  Q  L  M  V  G  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48972" stop="49925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFIPNLYLIRRNLHFSDHISPENGIQGRRMKSIMSTLPENAENPVGSSAGKSRIRRVNEFISSLISLSYSIKVFPVKWQSIRSKLEELLSSLSAIENCDSTENYPPLCSSLQAITATLKNCHELSRHCVEFSYSGKLLMQSDLDIVSTKLDNHIKSISEIYSLGLLTQSSAIIVPKPNLGASRDDIKFYIRDLLSRVKIGSSEMKKQGLIALNEIIQEDDRYVKVAIEIDNLVSVLVSFLDLQEDNLQEEAAKALSVIAGFQSFRSCLISAGIISPLIRVLECGIGLSKEFATRCLQKLTENSDNAWSISAHGGVTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50399" PGL_stop="50930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50399" e_stop="50930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="50399" e_stop="50930" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50399" stop="50930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50399" stop="50930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTATTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</gDNA_template>
            <first_frame> A  N  G  G  C  W  I  Y  A  *  V  G  E  V  S  R  F  K  V  I  *  G  *  R  N  G  S  *  N  T  I  K  Y  G  D  C  T  K  K  P  K  E  I  W  T  E  *  S  K  C  W  F  A  A  A  N  A  *  S  R  R  G  K  F  W  Q  Q  K  A  V  A  F  Y  T  H  V  I  N  K  L  Q  *  C  Q  K  E  N  C  K  L  R  V  S  D  K  H  *  K  V  S  *  G  *  S  F  R  C  K  K  D  S  Q  K  I  V  F  Q  *  I  Q  K  H  S  Q  W  N  L  A  F  I  I  N  V  I  Q  F  C  L  M  L  N  Y  L  P  K  P  K  I  R  K  E  I  L  C  N  I  N  Q  D  K  C  I  L  L  L  R  K  N  F  *  N  I  P  F  C  L  F  </first_frame>
            <second_frame>  L  M  G  D  A  G  F  M  P  E  L  V  K  F  L  D  S  K  S  Y  E  V  R  E  M  A  A  E  T  L  S  S  M  V  I  V  P  R  N  Q  K  R  F  G  Q  N  D  Q  N  V  G  L  L  L  Q  M  L  D  P  E  E  A  N  F  G  N  K  K  L  L  L  S  I  L  M  S  L  T  S  C  N  S  A  R  K  K  I  A  N  S  G  Y  L  I  N  I  E  K  L  A  E  A  E  V  S  D  A  K  K  I  V  R  K  L  S  S  N  R  F  R  S  I  L  S  G  I  W  H  S  *  S  M  *  F  N  F  V  L  C  L  T  I  Y  Q  N  Q  K  S  E  R  R  S  Y  V  I  *  T  K  I  N  V  F  Y  C  *  E  R  T  F  R  T  S  P  F  A  F  L </second_frame>
            <third_frame>   *  W  G  M  L  D  L  C  L  S  W  *  S  F  *  I  Q  S  H  M  R  L  E  K  W  Q  L  K  H  Y  Q  V  W  *  L  Y  Q  E  T  K  R  D  L  D  R  M  I  K  M  L  V  C  C  C  K  C  L  I  Q  K  R  Q  I  L  A  T  K  S  C  C  F  L  Y  S  C  H  *  Q  A  A  I  V  P  E  R  K  L  Q  T  Q  G  I  *  *  T  L  K  S  *  L  R  L  K  F  Q  M  Q  K  R  *  S  E  N  C  L  P  I  D  S  E  A  F  S  V  E  S  G  I  H  N  Q  C  N  S  I  L  S  Y  A  *  L  F  T  K  T  K  N  Q  K  G  D  L  M  *  Y  K  P  R  *  M  Y  F  I  V  K  K  E  L  L  E  H  P  L  L  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50400" stop="50789"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGDAGFMPELVKFLDSKSYEVREMAAETLSSMVIVPRNQKRFGQNDQNVGLLLQMLDPEEANFGNKKLLLSILMSLTSCNSARKKIANSGYLINIEKLAEAEVSDAKKIVRKLSSNRFRSILSGIWHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56365" PGL_stop="52497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56365" e_stop="55918"/>
            <exon e_start="55242" e_stop="55145"/>
            <exon e_start="55059" e_stop="54994"/>
            <exon e_start="54883" e_stop="54063"/>
            <exon e_start="52848" e_stop="52497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.941"/>
          <exon-intron don_prob="0.859" acc_prob="0.968" e_score="0.990"/>
          <exon-intron don_prob="0.827" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.869"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="56365" e_stop="55918" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="55242" e_stop="55145" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.859" acc_prob="0.968">
            <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55059" e_stop="54994" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.968">
            <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54883" e_stop="54063" e_length="821"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54062" i_stop="52849" i_length="1214"/>
          </intron>
          <exon e_serial="5" e_score="0.869">
            <gDNA_exon_boundary e_start="52848" e_stop="52497" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="54994"/>
              <exon start="54883" stop="54772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="55918"/>
              <exon start="55242" stop="55148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56359" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="54994"/>
              <exon start="54883" stop="54876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56325" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="55017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56306" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="55030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56299" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="54994"/>
              <exon start="54883" stop="54775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55975" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="54994"/>
              <exon start="54883" stop="54639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54782" stop="54207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54631" stop="54063"/>
              <exon start="52848" stop="52552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54315" stop="54063"/>
              <exon start="52848" stop="52497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428890" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG : TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG : GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG : GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA : GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAATGCATTTGCTTAATTATTTGTTGTCTTAGCTAAGTTTGCAGCTGGAATGAAAAG</gDNA_template>
            <first_frame> H  R  V  Y  F  L  I  S  F  S  P  P  S  A  T  T  H  I  H  Q  R  W  R  C  I  L  P  V  S  G  E  L  S  L  F  L  L  Q  F  L  L  K  L  S  I  N  Q  I  S  F  L  Q  L  H  H  S  P  N  V  R  L  P  K  A  I  C  L  S  L  T  V  S  I  F  R  P  N  G  D  Y  L  G  L  L  Q  Y  R  C  P  R  G  L  D  H  L  T  E  I  Q  L  T  M  K  *  V  P  T  Q  S  S  S  K  D  A  I  M  S  I  G  *  L  *  L  I  F  L  K  I  L  S  L  R  G  K  R  *  L  R  L  M  C  R  L  L  L  R  S  S  G   : V  W  K  R  L  R  K  R  F  M  P  *  A  Q  Q  L  T  E  V  F  R  S  C  V  Q  R  T  H  R  R  S  L  K  :  V  S  Q  E  L  C  L  Y  C  L  I  P  I  L  I  Q  *  T  R  N  M  E  :  V  T  S  I  I  T  E  K  S  L  R  D  H  L  L  H  S  F  K  D  K  V  A  G  L  E  E  A  H  S  I  N  K  A  I  I  A  L  L  S  R  T  M  G  Q  H  R  V  I  H  H  S  R  I  M  V  Q  H  R  V  L  H  H  S  R  I  I  T  R  H  R  V  L  H  P  S  R  T  M  A  H  Q  G  I  L  H  R  N  R  T  M  A  H  D  S  M  L  R  H  L  N  R  T  T  D  N  H  R  I  F  L  H  S  R  I  M  S  G  H  R  I  L  S  Q  T  R  V  T  V  Y  L  R  V  F  L  L  S  G  I  M  A  F  S  Q  N  L  Y  L  N  R  S  M  G  L  K  G  L  G  I  I  G  V  L  H  L  L  I  A  T  *  M  R  G  I  I  P  R  L  D  G  V  I  Q  Y  V  H  L  F  L  E  E  T  R  E  V  V  H  L  Q  S  K  E  A  L  E  E  F  N  I  M  G  L  N  K  V  E  V  L  N  N  K  P  L  E  I  N  H  *  D  M  G  P  S  L  G  R  T  I  Q  G  Q  E  E  I  R  I  S  H  R  *  S  S  R  A  T  C  K  G  G  S  R  G  L  M  H  L  V  V  Q  W  E  Q  I  K :   R  D  T  K  D  M  V  Q  Y  H  D  V  L  R  K  D  C  *  L  A  F  D  *  L  K  V  M  V  L  V  *  I  I  E  K  *  S  *  S  H  P  L  V  S  T  I  T  K  K  L  G  L  K  N  V  V  V  N  S  F  P  M  S  *  Y  G  Y  G  N  G  V  L  *  M  I  T  W  R  D  L  G  V  K  Q  A  S  C  I  C  F  F  L  C  K  E  E  G  F  *  C  I  C  L  I  I  C  C  L  S  *  V  C  S  W  N  E  K </first_frame>
            <second_frame>  T  E  F  T  S  S  F  H  S  L  L  R  R  Q  P  H  I  S  T  S  D  G  A  V  Y  F  P  S  P  A  S  S  P  S  F  F  F  N  F  C  S  N  F  P  S  T  K  S  H  F  S  N  C  I  T  L  P  M  Y  V  Y  P  K  Q  F  V  *  A  *  P  F  R  F  S  V  P  M  E  T  I  *  V  F  Y  N  I  A  V  L  E  V  S  I  I  *  P  K  S  S  *  R  *  N  R  S  R  H  N  P  L  R  R  M  R  L  *  A  L  A  D  C  D  *  F  S  *  R  Y  S  A  Y  E  G  R  D  D  *  D  L  C  A  D  C  C  *  G  L  R  E  :  C  G  R  G  *  E  K  D  L  C  L  K  H  N  N  L  P  R  F  S  G  L  V  F  R  G  H  I  E  E  V  *  R :   S  P  R  S  C  V  C  T  A  *  F  L  Y  *  S  S  K  Q  G  I  W  R :   *  Q  V  *  *  R  R  N  H  *  E  T  T  S  S  T  V  S  K  T  R  *  Q  A  S  K  R  P  T  V  S  T  R  Q  L  S  P  S  S  A  E  L  W  A  S  T  G  S  S  T  T  A  E  L  W  C  S  T  G  S  S  T  T  A  E  L  *  R  A  T  G  S  S  T  P  A  E  L  W  P  T  K  V  S  S  T  A  T  E  L  W  L  T  T  V  C  S  A  T  S  T  E  L  Q  T  T  T  G  S  F  S  T  A  E  L  *  A  A  T  E  S  S  A  K  P  E  L  R  C  T  S  E  C  S  F  S  V  E  S  W  P  S  A  K  I  C  T  S  T  D  L  W  A  S  R  G  W  G  S  *  G  S  C  T  S  *  *  Q  P  R  C  V  G  *  F  P  G  W  M  G  *  F  N  T  F  T  F  S  S  K  R  P  E  R  W  C  T  S  R  A  R  R  L  W  R  S  S  T  L  W  V  S  T  R  W  K  F  *  T  T  N  L  W  R  S  T  T  E  I  W  A  P  V  W  A  E  Q  S  K  A  R  R  K  S  E  F  P  T  D  R  A  A  G  Q  H  A  R  G  G  A  E  D  L  C  I  *  W  Y  N  G  N  R  S   : R  E  I  L  K  I  W  C  S  I  M  T  Y  *  E  R  I  V  N  *  L  L  T  S  *  R  *  W  F  L  S  E  *  L  R  N  D  H  D  H  I  L  *  S  Q  Q  L  P  R  N  L  G  *  R  M  L  W  *  I  V  F  Q  C  L  N  M  V  M  E  M  V  F  C  E  *  *  H  G  E  T  *  V  *  N  K  P  L  V  S  V  S  F  C  A  R  K  K  V  S  N  A  F  A  *  L  F  V  V  L  A  K  F  A  A  G  M  K   </second_frame>
            <third_frame>   Q  S  L  L  P  H  F  I  L  S  S  V  G  N  H  T  Y  P  P  A  M  A  L  Y  T  S  R  L  R  R  A  L  P  L  S  S  S  I  F  A  Q  T  F  H  Q  P  N  L  I  S  P  I  A  S  L  S  Q  C  T  S  T  Q  S  N  L  S  K  L  N  R  F  D  F  P  S  Q  W  R  L  F  R  S  S  T  I  S  L  S  S  R  S  R  S  F  D  R  N  P  A  D  D  E  I  G  P  D  T  I  L  F  E  G  C  D  Y  E  H  W  L  I  V  I  D  F  P  K  D  T  Q  L  T  R  E  E  M  I  E  T  Y  V  Q  T  A  A  K  V  F  G  S :   V  E  E  A  K  K  K  I  Y  A  L  S  T  T  T  Y  R  G  F  Q  V  L  C  S  E  D  T  S  K  K  F  E   : G  L  P  G  V  V  F  V  L  P  D  S  Y  I  D  P  V  N  K  E  Y  G   : G  D  K  Y  N  N  G  E  I  I  E  R  P  P  P  P  Q  F  Q  R  Q  G  S  R  P  R  R  G  P  Q  Y  Q  Q  G  N  Y  R  P  P  Q  Q  N  Y  G  P  A  Q  G  H  P  P  Q  Q  N  Y  G  A  A  Q  G  P  P  P  Q  Q  N  Y  N  A  P  Q  G  P  P  P  Q  Q  N  Y  G  P  P  R  Y  P  P  P  Q  Q  N  Y  G  S  R  Q  Y  A  P  P  P  Q  Q  N  Y  R  Q  P  Q  D  L  S  P  Q  Q  N  Y  E  R  P  Q  N  P  Q  P  N  Q  S  Y  G  V  P  Q  S  V  P  S  Q  W  N  H  G  L  Q  P  K  F  V  P  Q  Q  I  Y  G  P  Q  G  A  G  D  H  R  G  P  A  P  P  D  S  N  L  D  A  W  D  N  S  Q  V  G  W  G  D  S  I  R  S  P  F  P  R  R  D  Q  R  G  G  A  P  P  E  Q  G  G  F  G  G  V  Q  H  Y  G  S  Q  Q  G  G  S  S  E  Q  Q  T  F  G  D  Q  P  L  R  Y  G  P  Q  F  G  Q  N  N  P  R  P  G  G  N  Q  N  F  P  P  I  E  Q  Q  G  N  M  Q  G  G  E  Q  R  T  Y  A  S  S  G  T  M  G  T  D  Q  :  E  R  Y  *  R  Y  G  A  V  S  *  R  T  E  K  G  L  L  I  S  F  *  L  A  K  G  D  G  S  C  L  N  N  *  E  M  I  M  I  T  S  S  S  L  N  N  Y  Q  E  T  W  A  E  E  C  C  G  K  *  F  S  N  V  L  I  W  L  W  K  W  C  F  V  N  D  N  M  E  R  L  R  C  K  T  S  L  L  Y  L  F  L  F  V  Q  G  R  R  F  L  M  H  L  L  N  Y  L  L  S  *  L  S  L  Q  L  E  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56363" stop="55918"/>
                    <exon start="55242" stop="55145"/>
                    <exon start="55059" stop="54994"/>
                    <exon start="54883" stop="54063"/>
                    <exon start="52848" stop="52837"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLLPHFILSSVGNHTYPPAMALYTSRLRRALPLSSSIFAQTFHQPNLISPIASLSQCTSTQSNLSKLNRFDFPSQWRLFRSSTISLSSRSRSFDRNPADDEIGPDTILFEGCDYEHWLIVIDFPKDTQLTREEMIETYVQTAAKVFGSVEEAKKKIYALSTTTYRGFQVLCSEDTSKKFEGLPGVVFVLPDSYIDPVNKEYGGDKYNNGEIIERPPPPQFQRQGSRPRRGPQYQQGNYRPPQQNYGPAQGHPPQQNYGAAQGPPPQQNYNAPQGPPPQQNYGPPRYPPPQQNYGSRQYAPPPQQNYRQPQDLSPQQNYERPQNPQPNQSYGVPQSVPSQWNHGLQPKFVPQQIYGPQGAGDHRGPAPPDSNLDAWDNSQVGWGDSIRSPFPRRDQRGGAPPEQGGFGGVQHYGSQQGGSSEQQTFGDQPLRYGPQFGQNNPRPGGNQNFPPIEQQGNMQGGEQRTYASSGTMGTDQERY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65218" PGL_stop="68218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66990" e_stop="67376"/>
            <exon e_start="67467" e_stop="68218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66990" e_stop="67376" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67467" e_stop="68218" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66990" stop="67376"/>
              <exon start="67467" stop="68218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="68205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="67894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="67669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67514" stop="67975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67620" stop="68205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA : ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</gDNA_template>
            <first_frame> N  H  D  E  A  K  A  R  L  K  R  I  R  G  I  E  D  V  D  E  E  F  N  D  L  V  I  A  S  E  A  S  R  K  I  E  H  P  W  R  N  L  L  Q  K  K  Y  R  P  H  L  T  M  A  I  M  I  P  F  F  Q  Q  L  T  G  I  N  V  I  M  F  Y  A  P  V  L  F  K  T  I  G  F  G  T  D  A  S  L  M  S  A  V  I  T  G  G  I  N  V  I  A  T  I  V  S  I  Y  Y  V  D  K  L  G  R  R  F  L  F  L  E  G  G  I  Q  M  L  F  S  Q  :  I  A  V  A  I  L  I  A  I  K  F  G  V  N  G  T  P  G  E  L  P  K  W  Y  A  I  V  V  V  I  F  I  C  V  Y  V  A  G  F  A  W  S  W  G  P  L  G  W  L  V  P  S  E  I  F  P  L  E  I  R  S  A  A  Q  S  I  N  V  S  V  N  M  I  F  T  F  A  V  A  Q  V  F  L  T  M  L  C  H  L  K  F  G  L  F  L  F  F  A  F  F  V  V  I  M  T  V  F  I  Y  F  F  L  P  E  T  K  N  I  P  I  E  E  M  V  I  V  W  K  E  H  W  F  W  S  K  F  M  T  E  V  D  Y  P  G  T  R  N  G  T  A  V  E  M  A  K  G  G  A  G  Y  K  I  V  *  L  *  F  G  F  L  N  F  Y  L  L  F  V  *  C  C  S  G  D  D  I  D  N  Y  *  L  D  L  I  E  T  V  S  I  V  Y  F  C  I  E  K  N  T  *  L  C  S  I  E  N  L  A  K  Q  L  C  S  L  L  F  V  L  L  D  V  L  F  S  S  S  S  L  L  V  *  D  L  Y  Y  K  K  L  C  S  *  A   </first_frame>
            <second_frame>  T  T  T  K  P  K  L  D  *  R  E  L  G  E  L  K  M  *  M  K  S  S  M  I  W  L  L  L  V  K  L  L  G  K  L  N  I  P  G  G  T  C  C  K  R  N  I  D  H  I  L  Q  W  Q  L  *  S  H  F  S  N  N  L  L  E  S  T  *  L  C  F  M  H  L  C  C  L  K  P  L  V  L  V  L  M  L  H  L  C  L  L  *  S  L  V  E  S  M  S  L  P  L  L  F  L  F  T  M  L  I  N  *  E  E  D  S  C  F  L  K  V  E  F  K  C  S  F  P  K :   *  P  W  Q  F  *  *  Q  *  S  L  E  *  M  E  L  Q  G  N  Y  Q  N  G  M  Q  *  W  L  *  Y  S  F  V  Y  M  L  L  D  S  L  G  H  G  V  L  L  D  G  S  Y  L  V  K  F  S  H  W  K  F  D  Q  L  H  K  V  S  M  S  Q  *  T  *  S  S  H  L  Q  *  H  K  F  S  *  Q  C  C  V  I  *  S  L  D  C  F  C  F  S  P  S  L  W  *  L  *  L  C  S  Y  T  S  S  C  L  R  R  K  I  F  R  *  K  R  W  *  L  C  G  K  N  I  G  S  G  L  S  S  *  L  K  L  I  I  L  E  L  G  M  E  L  L  L  K  W  L  K  G  V  L  V  T  K  L  Y  D  F  S  L  G  F  *  I  F  I  C  C  L  Y  N  V  V  V  G  M  I  L  I  I  I  N  *  I  *  L  K  L  F  L  L  F  T  F  A  *  K  K  I  H  N  F  V  Q  *  K  I  W  Q  S  N  C  V  A  F  C  L  F  C  W  M  Y  Y  L  V  V  L  V  F  *  C  K  I  F  I  I  K  N  Y  V  H  K  L  </second_frame>
            <third_frame>   P  R  R  S  Q  S  S  I  E  E  N  *  G  N  *  R  C  R  *  R  V  Q  *  F  G  Y  C  *  *  S  F  *  E  N  *  T  S  L  E  E  L  V  A  K  E  I  *  T  T  S  Y  N  G  N  Y  D  P  I  F  P  T  T  Y  W  N  Q  R  D  Y  V  L  C  T  C  V  V  *  N  H  W  F  W  Y  *  C  F  T  Y  V  C  C  D  H  W  W  N  Q  C  H  C  H  Y  C  F  Y  L  L  C  *  *  I  R  K  K  I  L  V  S  *  R  W  N  S  N  A  L  F  P   : N  S  R  G  N  F  D  S  N  K  V  W  S  K  W  N  S  R  G  I  T  K  M  V  C  N  S  G  C  D  I  H  L  C  I  C  C  W  I  R  L  V  M  G  S  S  W  M  A  R  T  *  *  N  F  P  T  G  N  S  I  S  C  T  K  Y  Q  C  L  S  E  H  D  L  H  I  C  S  S  T  S  F  L  N  N  V  V  S  F  E  V  W  I  V  S  V  F  R  L  L  C  G  D  Y  D  C  V  H  I  L  L  L  A  *  D  E  K  Y  S  D  R  R  D  G  D  C  V  E  R  T  L  V  L  V  *  V  H  D  *  S  *  L  S  W  N  *  E  W  N  C  C  *  N  G  *  R  G  C  W  L  Q  N  C  M  T  L  V  W  V  F  K  F  L  F  V  V  C  I  M  L  *  W  G  *  Y  *  *  L  L  I  R  F  D  *  N  C  F  Y  C  L  L  L  H  R  K  K  Y  I  T  L  F  N  R  K  F  G  K  A  T  V  *  P  F  V  C  F  V  G  C  T  I  *  *  F  *  S  F  S  V  R  S  L  L  *  K  I  M  F  I  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66990" stop="67376"/>
                    <exon start="67467" stop="67958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHDEAKARLKRIRGIEDVDEEFNDLVIASEASRKIEHPWRNLLQKKYRPHLTMAIMIPFFQQLTGINVIMFYAPVLFKTIGFGTDASLMSAVITGGINVIATIVSIYYVDKLGRRFLFLEGGIQMLFSQIAVAILIAIKFGVNGTPGELPKWYAIVVVIFICVYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQVFLTMLCHLKFGLFLFFAFFVVIMTVFIYFFLPETKNIPIEEMVIVWKEHWFWSKFMTEVDYPGTRNGTAVEMAKGGAGYKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65218" e_stop="65287"/>
            <exon e_start="67065" e_stop="67376"/>
            <exon e_start="67467" e_stop="68205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.693" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65218" e_stop="65287" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.693" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65288" i_stop="67064" i_length="1777"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67065" e_stop="67376" e_length="312"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="67467" e_stop="68205" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65218" stop="65287"/>
              <exon start="67065" stop="67376"/>
              <exon start="67467" stop="67607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="68205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="67894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67513" stop="67669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67514" stop="67975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67620" stop="68205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTG : GTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA : ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</gDNA_template>
            <first_frame> G  A  L  I  N  G  F  A  Q  N  V  A  M  L  I  I  G  R  I  F  L  G  F   : G  Y  C  *  *  S  F  *  E  N  *  T  S  L  E  E  L  V  A  K  E  I  *  T  T  S  Y  N  G  N  Y  D  P  I  F  P  T  T  Y  W  N  Q  R  D  Y  V  L  C  T  C  V  V  *  N  H  W  F  W  Y  *  C  F  T  Y  V  C  C  D  H  W  W  N  Q  C  H  C  H  Y  C  F  Y  L  L  C  *  *  I  R  K  K  I  L  V  S  *  R  W  N  S  N  A  L  F  P   : N  S  R  G  N  F  D  S  N  K  V  W  S  K  W  N  S  R  G  I  T  K  M  V  C  N  S  G  C  D  I  H  L  C  I  C  C  W  I  R  L  V  M  G  S  S  W  M  A  R  T  *  *  N  F  P  T  G  N  S  I  S  C  T  K  Y  Q  C  L  S  E  H  D  L  H  I  C  S  S  T  S  F  L  N  N  V  V  S  F  E  V  W  I  V  S  V  F  R  L  L  C  G  D  Y  D  C  V  H  I  L  L  L  A  *  D  E  K  Y  S  D  R  R  D  G  D  C  V  E  R  T  L  V  L  V  *  V  H  D  *  S  *  L  S  W  N  *  E  W  N  C  C  *  N  G  *  R  G  C  W  L  Q  N  C  M  T  L  V  W  V  F  K  F  L  F  V  V  C  I  M  L  *  W  G  *  Y  *  *  L  L  I  R  F  D  *  N  C  F  Y  C  L  L  L  H  R  K  K  Y  I  T  L  F  N  R  K  F  G  K  A  T  V  *  P  F  V  C  F  V  G  C  T  I  *  *  F  *  S  F  S  V  R  S  L  L  *  K  I   </first_frame>
            <second_frame>  E  L  *  L  M  D  L  L  R  M  L  L  C  S  L  L  V  V  F  F  L  V  L  :  V  I  A  S  E  A  S  R  K  I  E  H  P  W  R  N  L  L  Q  K  K  Y  R  P  H  L  T  M  A  I  M  I  P  F  F  Q  Q  L  T  G  I  N  V  I  M  F  Y  A  P  V  L  F  K  T  I  G  F  G  T  D  A  S  L  M  S  A  V  I  T  G  G  I  N  V  I  A  T  I  V  S  I  Y  Y  V  D  K  L  G  R  R  F  L  F  L  E  G  G  I  Q  M  L  F  S  Q  :  I  A  V  A  I  L  I  A  I  K  F  G  V  N  G  T  P  G  E  L  P  K  W  Y  A  I  V  V  V  I  F  I  C  V  Y  V  A  G  F  A  W  S  W  G  P  L  G  W  L  V  P  S  E  I  F  P  L  E  I  R  S  A  A  Q  S  I  N  V  S  V  N  M  I  F  T  F  A  V  A  Q  V  F  L  T  M  L  C  H  L  K  F  G  L  F  L  F  F  A  F  F  V  V  I  M  T  V  F  I  Y  F  F  L  P  E  T  K  N  I  P  I  E  E  M  V  I  V  W  K  E  H  W  F  W  S  K  F  M  T  E  V  D  Y  P  G  T  R  N  G  T  A  V  E  M  A  K  G  G  A  G  Y  K  I  V  *  L  *  F  G  F  L  N  F  Y  L  L  F  V  *  C  C  S  G  D  D  I  D  N  Y  *  L  D  L  I  E  T  V  S  I  V  Y  F  C  I  E  K  N  T  *  L  C  S  I  E  N  L  A  K  Q  L  C  S  L  L  F  V  L  L  D  V  L  F  S  S  S  S  L  L  V  *  D  L  Y  Y  K  K  L  </second_frame>
            <third_frame>   S  F  D  *  W  I  C  S  E  C  C  Y  A  H  Y  W  S  Y  F  S  W  F  W :   L  L  L  V  K  L  L  G  K  L  N  I  P  G  G  T  C  C  K  R  N  I  D  H  I  L  Q  W  Q  L  *  S  H  F  S  N  N  L  L  E  S  T  *  L  C  F  M  H  L  C  C  L  K  P  L  V  L  V  L  M  L  H  L  C  L  L  *  S  L  V  E  S  M  S  L  P  L  L  F  L  F  T  M  L  I  N  *  E  E  D  S  C  F  L  K  V  E  F  K  C  S  F  P  K :   *  P  W  Q  F  *  *  Q  *  S  L  E  *  M  E  L  Q  G  N  Y  Q  N  G  M  Q  *  W  L  *  Y  S  F  V  Y  M  L  L  D  S  L  G  H  G  V  L  L  D  G  S  Y  L  V  K  F  S  H  W  K  F  D  Q  L  H  K  V  S  M  S  Q  *  T  *  S  S  H  L  Q  *  H  K  F  S  *  Q  C  C  V  I  *  S  L  D  C  F  C  F  S  P  S  L  W  *  L  *  L  C  S  Y  T  S  S  C  L  R  R  K  I  F  R  *  K  R  W  *  L  C  G  K  N  I  G  S  G  L  S  S  *  L  K  L  I  I  L  E  L  G  M  E  L  L  L  K  W  L  K  G  V  L  V  T  K  L  Y  D  F  S  L  G  F  *  I  F  I  C  C  L  Y  N  V  V  V  G  M  I  L  I  I  I  N  *  I  *  L  K  L  F  L  L  F  T  F  A  *  K  K  I  H  N  F  V  Q  *  K  I  W  Q  S  N  C  V  A  F  C  L  F  C  W  M  Y  Y  L  V  V  L  V  F  *  C  K  I  F  I  I  K  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65228" stop="65287"/>
                    <exon start="67065" stop="67376"/>
                    <exon start="67467" stop="67958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDLLRMLLCSLLVVFFLVLVIASEASRKIEHPWRNLLQKKYRPHLTMAIMIPFFQQLTGINVIMFYAPVLFKTIGFGTDASLMSAVITGGINVIATIVSIYYVDKLGRRFLFLEGGIQMLFSQIAVAILIAIKFGVNGTPGELPKWYAIVVVIFICVYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQVFLTMLCHLKFGLFLFFAFFVVIMTVFIYFFLPETKNIPIEEMVIVWKEHWFWSKFMTEVDYPGTRNGTAVEMAKGGAGYKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="79304" PGL_stop="75024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79304" e_stop="78904"/>
            <exon e_start="76900" e_stop="76830"/>
            <exon e_start="76662" e_stop="76581"/>
            <exon e_start="76441" e_stop="76323"/>
            <exon e_start="75896" e_stop="75819"/>
            <exon e_start="75680" e_stop="75561"/>
            <exon e_start="75462" e_stop="75192"/>
            <exon e_start="75045" e_stop="75031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="0.998"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.219" e_score="0.993"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79304" e_stop="78904" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76900" e_stop="76830" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76662" e_stop="76581" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76441" e_stop="76323" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75896" e_stop="75819" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75680" e_stop="75561" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="75462" e_stop="75192" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.219">
            <gDNA_intron_boundary i_start="75191" i_stop="75046" i_length="146"/>
          </intron>
          <exon e_serial="8" e_score="0.733">
            <gDNA_exon_boundary e_start="75045" e_stop="75031" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79304" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79303" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79299" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79297" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79292" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79272" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79272" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79001" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75192"/>
              <exon start="75045" stop="75031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78957" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGA : AAGCAAAACAAGAAA</gDNA_template>
            <first_frame> C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V  E :   S  K  T  R   </first_frame>
            <second_frame>  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L   : K  A  K  Q  E  </second_frame>
            <third_frame>   H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  *  :  K  Q  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79198" stop="78904"/>
                    <exon start="76900" stop="76830"/>
                    <exon start="76662" stop="76581"/>
                    <exon start="76441" stop="76323"/>
                    <exon start="75896" stop="75819"/>
                    <exon start="75680" stop="75561"/>
                    <exon start="75462" stop="75400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75421" stop="75192"/>
                    <exon start="75045" stop="75033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVESKTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79304" e_stop="78904"/>
            <exon e_start="76900" e_stop="76830"/>
            <exon e_start="76662" e_stop="76581"/>
            <exon e_start="76441" e_stop="76323"/>
            <exon e_start="75896" e_stop="75819"/>
            <exon e_start="75680" e_stop="75561"/>
            <exon e_start="75462" e_stop="75191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="0.998"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79304" e_stop="78904" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76900" e_stop="76830" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76662" e_stop="76581" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76441" e_stop="76323" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75896" e_stop="75819" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75680" e_stop="75561" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75462" e_stop="75191" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79304" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79303" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79299" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79297" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79292" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79272" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79272" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78957" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75851" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</gDNA_template>
            <first_frame> C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V  E </first_frame>
            <second_frame>  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L   </second_frame>
            <third_frame>   H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79198" stop="78904"/>
                    <exon start="76900" stop="76830"/>
                    <exon start="76662" stop="76581"/>
                    <exon start="76441" stop="76323"/>
                    <exon start="75896" stop="75819"/>
                    <exon start="75680" stop="75561"/>
                    <exon start="75462" stop="75400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75421" stop="75191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77838" e_stop="77739"/>
            <exon e_start="76900" e_stop="76830"/>
            <exon e_start="76662" e_stop="76581"/>
            <exon e_start="76441" e_stop="76323"/>
            <exon e_start="75896" e_stop="75819"/>
            <exon e_start="75680" e_stop="75561"/>
            <exon e_start="75462" e_stop="75193"/>
            <exon e_start="75045" e_stop="75024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.826" acc_prob="0.923" e_score="0.980"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.219" e_score="1.000"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="77838" e_stop="77739" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.826" acc_prob="0.923">
            <gDNA_intron_boundary i_start="77738" i_stop="76901" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76900" e_stop="76830" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76662" e_stop="76581" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76441" e_stop="76323" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75896" e_stop="75819" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75680" e_stop="75561" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75462" e_stop="75193" e_length="270"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.219">
            <gDNA_intron_boundary i_start="75192" i_stop="75046" i_length="147"/>
          </intron>
          <exon e_serial="8" e_score="0.682">
            <gDNA_exon_boundary e_start="75045" e_stop="75024" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77838" stop="77739"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75193"/>
              <exon start="75045" stop="75024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAG : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG : AAGCAAAACAAGAAACAGATAC</gDNA_template>
            <first_frame> Y  Q  *  G  R  I  T  K  P  T  M  Q  K  I  I  Q  Y  I  I  F  N  *  *  V  S  R  S  G  C  Y  A  T  L   : D  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L  :  K  Q  N  K  K  Q  I  </first_frame>
            <second_frame>  I  S  E  V  E  L  P  N  P  L  C  R  K  *  F  N  I  S  S  L  I  N  E  S  H  A  V  G  V  M  Q  H  *  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  * :   S  K  T  R  N  R  Y </second_frame>
            <third_frame>   S  V  R  S  N  Y  Q  T  H  Y  A  E  N  N  S  I  Y  H  L  *  L  M  S  L  T  Q  W  V  L  C  N  T  R :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V   : E  A  K  Q  E  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77769" stop="77739"/>
                    <exon start="76900" stop="76830"/>
                    <exon start="76662" stop="76581"/>
                    <exon start="76441" stop="76323"/>
                    <exon start="75896" stop="75819"/>
                    <exon start="75680" stop="75561"/>
                    <exon start="75462" stop="75400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRSGCYATLDEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75421" stop="75193"/>
                    <exon start="75045" stop="75026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVEAKQETD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81576" PGL_stop="84687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81576" e_stop="81618"/>
            <exon e_start="84133" e_stop="84687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.698"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.698">
            <gDNA_exon_boundary e_start="81576" e_stop="81618" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81619" i_stop="84132" i_length="2514"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="84133" e_stop="84687" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81576" stop="81618"/>
              <exon start="84133" stop="84687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722455" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCTCTTTCTAAACTTTTTATATTTTCTGTTTTTTCAAG : CTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCACTAGCCAGTCTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCACTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTCTTCCGCCTGTTTAATCTTCTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCACCAGAGAATTTCCATGTCTGCCTTGAAGATGATCCAGCACCAGCACCACAAGACGAGTCCTTAAGAGTCTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTCTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATGA</gDNA_template>
            <first_frame> F  S  L  F  L  N  F  L  Y  F  L  F  F  Q   : A  V  L  V  V  V  H  S  L  *  T  I  K  Y  T  C  T  S  Q  S  K  K  L  T  G  L  S  L  Y  I  Y  I  Q  K  P  *  T  Q  D  S  D  E  C  V  Y  T  Y  M  T  F  C  T  K  D  S  F  *  *  V  K  A  E  P  L  M  R  L  R  T  P  A  G  Q  E  H  D  S  P  K  R  L  F  R  L  F  N  L  L  S  L  C  C  F  Y  Q  S  I  G  I  N  T  T  R  E  F  P  C  L  P  *  R  *  S  S  T  S  T  T  R  R  V  L  K  S  L  D  S  T  V  T  L  S  C  C  L  M  I  L  Y  P  L  M  N  H  P  H  H  T  L  M  H  S  T  D  H  V  T  T  S  F  F  F  L  I  K  T  I  L  F  C  K  I  S  K  C  N  G  T  I  Y  I  E  E  L  M  </first_frame>
            <second_frame>  F  L  S  F  *  T  F  Y  I  F  C  F  F  K  :  L  Y  *  L  *  F  I  H  C  E  L  S  N  I  H  A  L  A  S  L  K  N  S  L  V  F  P  Y  I  Y  I  Y  K  N  P  K  P  K  T  Q  M  S  V  Y  I  H  I  *  H  F  V  Q  K  T  H  F  D  E  S  K  Q  S  H  *  *  D  *  G  P  Q  Q  V  K  N  M  T  V  L  K  D  S  S  A  C  L  I  F  L  A  F  A  A  F  I  R  A  L  V  S  T  P  P  E  N  F  H  V  C  L  E  D  D  P  A  P  A  P  Q  D  E  S  L  R  V  L  I  P  P  S  P  C  L  V  A  *  *  S  F  T  P  *  *  I  T  L  I  T  P  *  C  T  L  L  I  M  *  Q  L  V  F  F  F  *  S  R  R  F  C  F  V  K  F  P  S  V  M  E  R  Y  I  *  R  N  S  * </second_frame>
            <third_frame>   F  S  L  S  K  L  F  I  F  S  V  F  S  S :   C  T  S  C  S  S  F  T  V  N  Y  Q  I  Y  M  H  *  P  V  *  K  T  H  W  S  F  L  I  Y  I  Y  T  K  T  L  N  P  R  L  R  *  V  C  I  Y  I  Y  D  I  L  Y  K  R  L  I  L  M  S  Q  S  R  A  T  D  E  I  K  D  P  S  R  S  R  T  *  Q  S  *  K  T  L  P  P  V  *  S  S  *  P  L  L  L  L  S  E  H  W  Y  Q  H  H  Q  R  I  S  M  S  A  L  K  M  I  Q  H  Q  H  H  K  T  S  P  *  E  S  *  F  H  R  H  L  V  L  L  L  D  D  P  L  P  L  D  E  S  P  S  S  H  L  D  A  L  Y  *  S  C  N  N  *  F  F  F  F  N  Q  D  D  S  V  L  *  N  F  Q  V  *  W  N  D  I  Y  R  G  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84468" stop="84686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSTSTTRRVLKSLDSTVTLSCCLMILYPLMNHPHHTLMHSTDHVTTSFFFLIKTILFCKISKCNGTIYIEELM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84334" stop="84537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPQQVKNMTVLKDSSACLIFLAFAAFIRALVSTPPENFHVCLEDDPAPAPQDESLRVLIPPSPCLVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="87267" PGL_stop="89742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87267" e_stop="87488"/>
            <exon e_start="87622" e_stop="87724"/>
            <exon e_start="88430" e_stop="88532"/>
            <exon e_start="88852" e_stop="89060"/>
            <exon e_start="89707" e_stop="89742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87267" e_stop="87488" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87622" e_stop="87724" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88430" e_stop="88532" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88852" e_stop="89060" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89061" i_stop="89706" i_length="646"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89707" e_stop="89742" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87267" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="89060"/>
              <exon start="89707" stop="89742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87289" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="88948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</gDNA_template>
            <first_frame> S  T  T  F  H  H  Y  S  S  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : D  S  G  S  Y  *  W  Y  T  R  V  C  </first_frame>
            <second_frame>  P  P  L  S  T  I  T  L  Q  A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  I  L  D  P  I  D  G  T  R  G  F  V </second_frame>
            <third_frame>   H  H  F  P  P  L  L  F  K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   F  W  I  L  L  M  V  H  E  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87488"/>
                    <exon start="87622" stop="87724"/>
                    <exon start="88430" stop="88532"/>
                    <exon start="88852" stop="89060"/>
                    <exon start="89707" stop="89742"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWILDPIDGTRGFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87289" e_stop="87488"/>
            <exon e_start="87622" e_stop="87724"/>
            <exon e_start="88430" e_stop="88532"/>
            <exon e_start="88852" e_stop="89060"/>
            <exon e_start="89324" e_stop="89330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="0.929"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.421" e_score="0.995"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="87289" e_stop="87488" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="87622" e_stop="87724" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88430" e_stop="88532" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="88852" e_stop="89060" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.421">
            <gDNA_intron_boundary i_start="89061" i_stop="89323" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="89324" e_stop="89330" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87289" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="88948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87423" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="89060"/>
              <exon start="89324" stop="89330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : AATTGTG</gDNA_template>
            <first_frame> L  Q  A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  N  C  </first_frame>
            <second_frame>  F  K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   I  V </second_frame>
            <third_frame>   S  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87488"/>
                    <exon start="87622" stop="87724"/>
                    <exon start="88430" stop="88532"/>
                    <exon start="88852" stop="89060"/>
                    <exon start="89324" stop="89329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87319" e_stop="87724"/>
            <exon e_start="88430" e_stop="88532"/>
            <exon e_start="88852" e_stop="88933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="0.926"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="0.990"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="87319" e_stop="87724" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="88430" e_stop="88532" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="88852" e_stop="88933" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87319" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="88933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87319" stop="87724"/>
              <exon start="88430" stop="88532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</gDNA_template>
            <first_frame> F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R  S  P  I  A  D  T  S  L  H  I  F  F  L  Q  L  L  N  S  Y  I  R  P  Q  L  V  *  D  *  D  T  H  *  L  I  D  I  *  V  C  F  F  F  F  Q  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L </first_frame>
            <second_frame>  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L  G  L  P  S  P  T  L  L  C  I  F  F  F  F  S  C  *  I  R  I  F  D  L  N  *  F  E  T  E  T  H  I  D  *  L  I  Y  E  C  A  F  S  S  S  R  S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G   </second_frame>
            <third_frame>   S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  V  S  H  R  R  H  F  S  A  Y  F  F  S  S  V  V  E  F  V  Y  S  T  S  I  S  L  R  L  R  H  T  L  I  D  *  Y  M  S  V  L  F  L  L  P  G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87590" stop="87724"/>
                    <exon start="88430" stop="88532"/>
                    <exon start="88852" stop="88931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYECAFSSSRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSPIADTSLHIFFLQLLNSYIRPQLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="90813" PGL_stop="98440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90813" e_stop="90909"/>
            <exon e_start="92126" e_stop="92204"/>
            <exon e_start="92274" e_stop="92324"/>
            <exon e_start="97989" e_stop="98440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="0.979"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="90813" e_stop="90909" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="90910" i_stop="92125" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="92126" e_stop="92204" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92274" e_stop="92324" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="97989" e_stop="98440" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90813" stop="90909"/>
              <exon start="92126" stop="92204"/>
              <exon start="92274" stop="92324"/>
              <exon start="97989" stop="98331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92142" stop="92204"/>
              <exon start="92274" stop="92324"/>
              <exon start="97989" stop="98278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417843" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92171" stop="92204"/>
              <exon start="92274" stop="92324"/>
              <exon start="97989" stop="98279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92174" stop="92204"/>
              <exon start="92274" stop="92324"/>
              <exon start="97989" stop="98440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACGGACTCTGAGAACATAGGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAG : TTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG : GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG : GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</gDNA_template>
            <first_frame> G  N  L  Y  P  C  Q  V  Y  L  M  Q  K  R  T  L  R  T  *  E  K  G  T  Y  F  F  C  L  H  A  V  G   : V  C  A  N  I  *  W  W  L  L  V  E  H  Q  F  T  F  R  G  R  R  R  H  L  L  S  R :   S  G  T  M  L  L  E  S  Y  V  S  M  K  L  E  G  R :   *  L  T  G  K  E  V  H  L  I  L  Q  Q  I  K  L  N  G  D  S  S  F  L  Q  A  V  F  L  *  L  M  G  A  Y  I  A  R  L  S  K  *  S  L  Q  I  H  Q  F  F  D  R  L  L  A  L  L  *  Q  N  Q  *  S  D  T  N  E  D  F  L  Q  F  I  N  C  L  M  T  L  A  F  F  *  R  I  T  A  Y  R  S  I  H  I  N  V  S  P  F  S  S  S  S  Y  S  S  V  S  L  C  C  F  S  *  I  P  V  S  F  F  F  H  L  Y  G  R  I  I  L  V  E  N  D  S  *  L  Q  S  S  L  *  I  N  V  L  F  V  S  S  L  H  *  </first_frame>
            <second_frame>  E  I  F  T  L  V  R  F  I  *  C  K  N  G  L  *  E  H  R  R  R  E  H  T  S  S  V  C  M  L  W  E  :  F  V  Q  I  S  D  G  G  F  W  *  S  I  S  L  H  S  G  E  E  G  D  I  Y  Y  Q   : G  L  G  P  C  C  W  N  H  M  C  P  *  S  W  R  E   : G  D  *  L  G  R  K  F  T  *  F  C  S  R  S  N  *  T  E  T  H  L  S  F  R  R  C  S  C  D  *  W  E  L  T  *  Q  D  Y  R  N  D  L  F  K  F  I  S  S  L  T  G  F  W  H  Y  C  D  K  I  N  S  Q  I  L  M  K  I  S  S  N  S  S  I  V  *  *  H  L  H  S  F  D  E  S  Q  H  I  E  V  Y  I  S  M  S  L  H  F  L  P  P  R  T  H  Q  Y  L  S  V  V  S  H  K  Y  L  Y  R  S  S  F  I  C  M  E  G  *  Y  W  W  R  M  I  H  D  C  S  L  A  Y  K  S  M  F  F  L  F  L  P  F  I  E </second_frame>
            <third_frame>   K  S  L  P  L  S  G  L  F  D  A  K  T  D  S  E  N  I  G  E  G  N  I  L  L  L  S  A  C  C  G  S :   L  C  K  Y  L  M  V  A  S  G  R  A  S  V  Y  I  Q  G  K  K  A  T  S  I  I  K  :  V  W  D  H  A  V  G  I  I  C  V  H  E  A  G  G  K  :  V  T  D  W  E  G  S  S  L  D  F  A  A  D  Q  T  E  R  R  L  I  F  P  S  G  G  V  L  V  T  N  G  S  L  H  S  K  I  I  E  M  I  S  S  N  S  S  V  L  *  Q  A  F  G  I  I  V  T  K  S  I  V  R  Y  *  *  R  F  P  P  I  H  Q  L  F  N  D  T  C  I  L  L  T  N  H  S  I  *  K  Y  T  Y  Q  C  L  S  I  F  F  L  L  V  L  I  S  I  S  L  L  F  L  I  N  T  C  I  V  L  L  S  S  V  W  K  D  N  I  G  G  E  *  F  M  T  A  V  *  L  I  N  Q  C  S  F  C  F  F  P  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90815" stop="90909"/>
                    <exon start="92126" stop="92204"/>
                    <exon start="92274" stop="92324"/>
                    <exon start="97989" stop="98138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSLPLSGLFDAKTDSENIGEGNILLLSACCGSLCKYLMVASGRASVYIQGKKATSIIKVWDHAVGIICVHEAGGKVTDWEGSSLDFAADQTERRLIFPSGGVLVTNGSLHSKIIEMISSNSSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95396" e_stop="96044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="95396" e_stop="96044" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95396" stop="96044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95397" stop="95781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95397" stop="96044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96055" e_stop="96850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="96055" e_stop="96850" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96055" stop="96850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96057" stop="96848"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99208" PGL_stop="100110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99208" e_stop="100110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="99208" e_stop="100110" e_length="903"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99208" stop="100110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAACTCCTTATGTGCAACT</gDNA_template>
            <first_frame> L  V  L  Y  I  I  I  T  A  F  P  P  K  L  V  S  I  *  L  K  N  T  L  V  D  S  *  Q  K  Q  R  K  K  N  H  Q  E  M  F  S  Q  L  T  *  A  W  E  A  R  V  T  W  Y  M  C  W  W  K  L  A  S  S  Q  L  G  A  Y  K  L  A  R  H  H  V  K  V  P  D  N  G  N  I  I  Y  *  P  V  Q  I  H  I  H  W  S  F  H  L  E  A  H  N  F  E  L  H  F  S  S  L  F  *  S  F  G  F  S  F  L  S  G  C  S  A  N  L  I  T  M  T  L  T  *  E  N  L  N  K  I  L  A  *  H  N  Y  S  A  T  N  R  Q  K  Q  L  E  R  E  G  H  K  L  R  V  K  N  I  T  S  S  Y  H  Q  *  G  R  M  K  Q  F  L  V  Q  L  F  G  T  N  A  L  Q  L  T  A  T  S  Q  Q  P  C  M  H  I  N  V  C  T  H  V  N  T  Y  S  Q  K  S  F  K  P  E  *  H  *  K  K  E  E  L  E  Q  S  E  V  A  K  T  E  E  R  H  E  I  M  V  I  L  S  T  L  K  C  T  *  D  L  F  Y  I  A  K  K  N  P  G  A  A  A  Y  G  *  T  L  L  F  G  G  Q  W  T  R  S  S  T  L  L  H  L  N  T  R  L  L  S  V  V  D  S  N  S  L  C  A  T </first_frame>
            <second_frame>  L  F  Y  I  L  *  *  Q  L  F  P  Q  N  L  C  Q  Y  N  *  K  I  H  W  W  I  P  S  R  S  K  E  K  K  I  T  R  R  C  F  L  N  L  L  K  P  G  R  Q  E  L  L  G  T  C  V  G  G  S  *  Q  V  A  S  *  V  H  T  S  W  P  D  T  M  *  R  Y  Q  T  M  V  T  *  Y  T  N  Q  F  R  Y  I  S  T  G  P  F  T  L  R  L  I  I  L  S  F  T  S  A  H  S  F  D  P  S  V  F  H  F  Y  L  D  A  L  Q  I  *  L  L  *  H  *  L  K  K  I  *  T  K  Y  L  H  D  T  I  T  Q  L  Q  I  D  K  N  N  L  K  E  K  D  I  N  *  E  *  R  T  L  P  A  A  I  I  S  E  D  A  *  S  S  S  W  S  S  C  L  E  L  M  H  C  S  *  Q  Q  Q  V  S  N  H  V  C  T  L  M  C  V  H  T  S  I  H  I  L  K  R  V  S  S  Q  S  D  T  K  R  K  R  S  *  N  R  A  R  L  P  K  R  K  R  D  M  K  S  W  *  F  C  Q  P  *  N  V  L  E  T  F  F  I  *  P  R  K  I  R  G  P  R  R  M  V  K  P  C  C  L  V  D  N  G  P  A  P  L  L  F  Y  T  *  I  L  G  F  C  L  S  W  I  Q  T  P  Y  V  Q   </second_frame>
            <third_frame>   C  F  I  Y  Y  N  N  S  F  S  P  K  T  C  V  N  I  I  E  K  Y  I  G  G  F  L  A  E  A  K  K  K  K  S  P  G  D  V  F  S  T  Y  L  S  L  G  G  K  S  Y  L  V  H  V  L  V  E  V  S  K  *  P  A  R  C  I  Q  A  G  Q  T  P  C  E  G  T  R  Q  W  *  H  N  I  L  T  S  S  D  T  Y  P  L  V  L  S  P  *  G  S  *  F  *  A  S  L  Q  L  T  L  L  I  L  R  F  F  I  F  I  W  M  L  C  K  F  D  Y  Y  D  I  D  L  R  K  S  E  Q  N  T  C  M  T  Q  L  L  S  Y  K  *  T  K  T  T  *  K  R  R  T  *  T  K  S  E  E  H  Y  Q  Q  L  S  S  V  R  T  H  E  A  V  L  G  P  V  V  W  N  *  C  T  A  V  D  S  N  K  S  A  T  M  Y  A  H  *  C  V  Y  T  R  Q  Y  I  F  S  K  E  F  Q  A  R  V  T  L  K  E  R  G  A  R  T  E  R  G  C  Q  N  G  R  E  T  *  N  H  G  N  F  V  N  L  E  M  Y  L  R  P  F  L  Y  S  Q  E  K  S  G  G  R  G  V  W  L  N  L  V  V  W  W  T  M  D  P  L  L  Y  S  S  T  L  K  Y  *  A  F  V  C  R  G  F  K  L  L  M  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="109940" PGL_stop="110509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109940" e_stop="110509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="109940" e_stop="110509" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109940" stop="110509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTCCCCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</gDNA_template>
            <first_frame> K  N  F  F  P  *  F  Q  D  F  L  F  V  S  L  T  V  K  L  S  P  P  K  L  L  Q  L  *  R  Y  *  C  W  *  A  S  F  R  Y  L  F  H  C  V  Q  W  V  F  F  K  S  H  V  H  *  N  N  I  L  E  E  G  D  S  M  R  Y  F  S  V  C  Y  S  S  M  S  V  H  I  S  E  T  I  *  V  E  F  I  I  P  E  T  I  *  S  G  Y  *  L  N  *  L  S  S  S  Y  L  Y  N  I  R  F  L  L  Y  L  K  K  L  I  I  H  S  S  L  L  D  F  F  D  H  T  L  F  Q  L  L  K  S  I  *  D  D  Y  I  C  H  *  S  A  *  L  V  L  *  S  T  T  K  H  Q  H  T  L  L  L  C  R  K  F  V  F  *  Q  Y  F  V  I  S  L  C  G  I  I  I  I  *  F  I  F </first_frame>
            <second_frame>  R  T  F  F  L  D  F  R  I  S  Y  L  C  L  *  L  L  S  F  P  H  Q  N  C  C  N  Y  R  D  T  S  A  G  R  H  L  S  D  T  Y  F  I  V  Y  N  G  F  S  S  K  V  M  F  T  R  I  I  F  W  R  R  G  T  L  C  D  I  L  V  S  A  I  L  Q  C  Q  S  T  Y  L  K  L  F  E  *  S  S  *  Y  L  K  L  F  D  Q  D  I  D  *  I  S  C  L  R  V  T  Y  I  T  S  D  S  C  Y  T  *  K  S  L  *  S  T  V  R  Y  L  T  S  L  T  T  H  Y  F  S  Y  *  N  P  S  K  M  I  I  F  V  I  D  L  L  D  *  S  C  E  A  P  Q  N  T  N  T  P  F  F  C  V  G  N  L  F  F  S  S  I  L  L  L  A  Y  V  E  L  S  L  S  N  S  F   </second_frame>
            <third_frame>   E  L  F  S  L  I  S  G  F  L  I  C  V  S  N  C  *  A  F  P  T  K  I  A  A  T  I  E  I  L  V  L  V  G  I  F  Q  I  L  I  S  L  C  T  M  G  F  L  Q  K  S  C  S  L  E  *  Y  S  G  G  G  G  L  Y  A  I  F  *  C  L  L  F  F  N  V  S  P  H  I  *  N  Y  L  S  R  V  H  N  T  *  N  Y  L  I  R  I  L  I  K  L  V  V  F  E  L  L  I  *  H  Q  I  L  V  I  L  E  K  A  Y  N  P  Q  F  V  T  *  L  L  *  P  H  I  I  S  V  I  E  I  H  L  R  *  L  Y  L  S  L  I  C  L  I  S  L  V  K  H  H  K  T  P  T  H  P  S  S  V  *  E  I  C  F  L  A  V  F  C  Y  *  L  M  W  N  Y  H  Y  L  I  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109986" stop="110195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFPHQNCCNYRDTSAGRHLSDTYFIVYNGFSSKVMFTRIIFWRRGTLCDILVSAILQCQSTYLKLFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="122935" PGL_stop="123913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122935" e_stop="122991"/>
            <exon e_start="123089" e_stop="123218"/>
            <exon e_start="123372" e_stop="123913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122935" e_stop="122991" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123089" e_stop="123218" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="123372" e_stop="123913" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122935" stop="122991"/>
              <exon start="123089" stop="123218"/>
              <exon start="123372" stop="123913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122935" stop="122991"/>
              <exon start="123089" stop="123218"/>
              <exon start="123372" stop="123789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122936" stop="122991"/>
              <exon start="123089" stop="123218"/>
              <exon start="123372" stop="123674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  S  Q  I  I  F  K  K  I  K  *  F  A  K  T  N  C  H  K  W  S  K  I  T  K  F  K  I  F  Q  L  *  V  Q  P  H  V  F  H  F  L  V  M  K  L  N  S  C  S  H  Q  L  Q  Q  K  *  R  I  S  H  Q  I  L  K  T  L  V  T  H  K  I  I  V  K  L  L  M  M  M  S  G </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N  P  K  *  S  S  R  K  S  N  N  L  P  K  P  I  A  T  N  G  P  K  *  P  N  S  R  F  F  N  Y  K  Y  N  P  M  C  S  I  F  *  S  *  S  S  T  H  A  A  T  N  Y  N  K  N  R  G  F  L  I  R  S  *  K  L  W  *  L  T  K  *  L  S  S  Y  *  *  *  *  V   </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L  I  P  N  N  L  Q  E  N  Q  I  I  C  Q  N  Q  L  P  Q  M  V  Q  N  N  Q  I  Q  D  F  S  T  I  S  T  T  P  C  V  P  F  S  S  H  E  A  Q  L  M  Q  P  P  I  T  T  K  I  E  D  F  S  S  D  L  E  N  F  G  N  S  Q  N  N  C  Q  V  I  N  D  D  E  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122937" stop="122991"/>
                    <exon start="123089" stop="123218"/>
                    <exon start="123372" stop="123912"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFLIPNNLQENQIICQNQLPQMVQNNQIQDFSTISTTPCVPFSSHEAQLMQPPITTKIEDFSSDLENFGNSQNNCQVINDDEW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="124078" PGL_stop="124384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124078" e_stop="124384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="124078" e_stop="124384" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124078" stop="124384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124195" stop="124348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTTGACCTTATTTCTATCACGAGT</gDNA_template>
            <first_frame> T  Y  F  N  N  S  S  S  T  T  T  E  D  E  R  D  S  Y  C  S  N  M  L  N  F  D  N  I  P  N  I  W  D  T  T  N  E  F  M  *  F  L  R  F  F  F  F  K  G  T  N  K  Q  F  E  R  G  V  L  F  F  F  F  T  S  E  L  L  D  M  L  L  F  P  E  K  Q  K  T  K  K  K  G  Y  F  F  *  F  S  A  *  F  L  F  C  *  P  Y  F  Y  H  E  </first_frame>
            <second_frame>  L  T  S  T  I  A  A  A  Q  L  L  K  M  K  E  I  A  T  A  A  T  C  *  T  L  I  I  F  Q  I  S  G  I  L  L  M  N  L  C  N  F  Y  A  F  F  F  L  K  E  Q  T  N  S  S  K  E  V  F  Y  F  F  F  L  P  L  S  F  W  T  C  C  C  F  L  K  N  K  K  Q  K  K  K  V  T  S  F  S  L  V  H  N  F  Y  F  V  D  L  I  S  I  T  S </second_frame>
            <third_frame>   L  L  Q  Q  *  Q  Q  H  N  Y  *  R  *  K  R  *  L  L  Q  Q  H  V  E  L  *  *  Y  S  K  Y  L  G  Y  Y  *  *  I  Y  V  I  F  T  L  F  F  F  *  R  N  K  Q  T  V  R  K  R  C  F  I  F  F  F  Y  L  *  A  F  G  H  V  V  V  S  *  K  T  K  N  K  K  K  R  L  L  L  L  V  *  C  I  I  F  I  L  L  T  L  F  L  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124148" stop="124384"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIIFQISGILLMNLCNFYAFFFLKEQTNSSKEVFYFFFLPLSFWTCCCFLKNKKQKKKVTSFSLVHNFYFVDLISITS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 135 chains have been computed
$ 
$ memory statistics:
$ 332632 bytes spliced alignments in total
$ 75 spliced alignments have been stored
$ 4435 bytes was the average size of a spliced alignment
$ 25832 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1614 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 153 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:30:07
-->
