<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:16:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437385" ref_strand="+" ref_description="SGN-E437385 [cSTA-3-J3]">
      <seq>caacccaccaataccgaacaacaatacataccgtatacccccagaccccgcctcgtcttcttcctcgaacccaccagtgcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcggtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcattcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15757" stop="18565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16057" g_stop="16218" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16219" i_stop="17589" i_length="1371">
            <donor d_prob="0.900" d_score="0.82"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="170" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17863" g_stop="18265" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="573" r_length="403" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E437385" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16057" e_stop="16218"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCACCAATA-CGAACAACAATACATTACGTATA-CCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGC</genome_strand>
        <mrna_strand>CAACCCACCAATACCGAACAACAATACATACCGTATACCCCCAGACCCCGCCTCGTCTTCTTCCTCGAACCCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCTGTAGC-ATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCGGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCATTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569740" ref_strand="+" ref_description="SGN-E569740 [14218]">
      <seq>aatacgaacaacaatacatacggtataccccagacccgggctcgccttcttcctcggaagccaccagtgcgaaactcagcaagcccagaccccggcgtctattcgctcttcgtacagtattccgggcttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccaggcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaagggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctgggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaaggggctgttgcctccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15766" stop="18589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16066" g_stop="16218" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16219" i_stop="17589" i_length="1371">
            <donor d_prob="0.900" d_score="0.80"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="161" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17863" g_stop="18289" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="592" r_length="431" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E569740" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16066" e_stop="16218"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTC-GAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCC-GC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCA-GCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAA-GGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCT-GGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAA-GGGCTGTTGCCCCCACTG</genome_strand>
        <mrna_strand>AATACGAACAACAATACATACGGTATACCCCAGACCCGGGCTCGCCTTCTTCCTCGGAAGCCACCAGTGCGAAACTCAGCAAGCCCAGACCCCGGCGTCTATTCGCTCTTCGTACAGTATTCCGGGCTTCATCGTCGGAAGAATCTGTAGC-ATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGGCTGTTGCCTCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617116" ref_strand="+" ref_description="SGN-E617116 [90590]">
      <seq>gcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatgggagatttggtcattgtgtatgagaggcacgacacaatgaaaagcagtgaaaggtcagtgaggattggggttctgcaaaaatcgttttgggggctttaaagcatttctgaattggataggtaaaccttttgggtccaagttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaaagggttccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaacctgtggctgtgccattccttctgctggcaaaatgtttgaaaccagatgggggtattgtgctccttctctcccatgcattgaaccaagtaccaacgctcatgttggaagttctcaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15833" stop="19750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16133" g_stop="16214" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17149" i_length="935">
            <donor d_prob="0.958" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17150" g_stop="17158" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="90" r_length="9" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17159" i_stop="17589" i_length="431">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="96" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17863" g_stop="18338" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="579" r_length="483" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19215" g_stop="19415" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="787" r_length="208" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E617116" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16133" e_stop="16214"/>
          <exon e_start="17150" e_stop="17158"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18338"/>
          <exon e_start="19215" e_stop="19415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGAT-GGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATG-AAAGCAGTGAAA-GTCAGTGAGGA-TGGGGTTCTGC-AGAATCGTTTT-GGTGCTTTTAAGCA-TTCTGAA-TGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCG-AGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTC-AACCT-TGGCT-TGTCATTCCTTCTGCTGGCAAAATG-TTGAAACCAGAT-GGGGTATTGTGCTCCTTCTCT-CCATGCATTGA</genome_strand>
        <mrna_strand>GCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATC--AATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAAGCAGTGAAAGGTCAGTGAGGATTGGGGTTCTGCAAAAATCGTTTTGGGGGCTTTAAAGCATTTCTGAATTGGATAGGTAAACCTTTTGGGTCCAA-GTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAAGGGTTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAAACCTGTGGCTGTGCCATTCCTTCTGCTGGCAAAATGTTTGAAACCAGATGGGGGTATTGTGCTCCTTCTCTCCCATGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454378" ref_strand="+" ref_description="SGN-E454378 [cSTS-23-G17]">
      <seq>gcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaaaggttccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15833" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16133" g_stop="16214" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17149" i_length="935">
            <donor d_prob="0.958" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17150" g_stop="17158" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="90" r_length="9" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17159" i_stop="17589" i_length="431">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="96" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17863" g_stop="18338" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="572" r_length="476" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19215" g_stop="19293" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="651" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E454378" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16133" e_stop="16214"/>
          <exon e_start="17150" e_stop="17158"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18338"/>
          <exon e_start="19215" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGAT</genome_strand>
        <mrna_strand>GCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATC--AATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAAGGTTCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449642" ref_strand="+" ref_description="SGN-E449642 [cSTS-7-I1]">
      <seq>gaaaacccagcaagcccagaccccgcttctattcgctcttcgtacagtattccggccttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgaattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatgtttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtangagtaagagatatacagggcgaagggttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15836" stop="19591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16134" g_stop="16218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.835"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16219" i_stop="17589" i_length="1371">
            <donor d_prob="0.900" d_score="0.82"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="91" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17863" g_stop="18338" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="568" r_length="477" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19215" g_stop="19291" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="645" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E449642" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16134" e_stop="16218"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18338"/>
          <exon e_start="19215" e_stop="19291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATG-ATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTG</genome_strand>
        <mrna_strand>GAAAACCCAGCAAGCCCAGACCCCGCTTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCTGTAGC-ATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGAATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATGTTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTANGAGTAAGAGATATACAGGGCGAAGGGTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618808" ref_strand="+" ref_description="SGN-E618808 [69490]">
      <seq>taagcccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaagggttccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaccttggcttgccaattccttctgctggcaaaatgttgaaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacaacggctcaatgtgaaggctctcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15836" stop="19747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16135" g_stop="16214" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17149" i_length="935">
            <donor d_prob="0.958" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17150" g_stop="17158" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="88" r_length="9" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17159" i_stop="17589" i_length="431">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17590" g_stop="17595" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="94" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17863" g_stop="18338" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="570" r_length="476" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19215" g_stop="19449" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="810" r_length="240" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E618808" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16135" e_stop="16214"/>
          <exon e_start="17150" e_stop="17158"/>
          <exon e_start="17590" e_stop="17595"/>
          <exon e_start="17863" e_stop="18338"/>
          <exon e_start="19215" e_stop="19449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTC-ATTCCTTCTGCTGGCAAAATGTTG-AAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGC-GCTC-ATGTGAA-GCACTCAAATCA</genome_strand>
        <mrna_strand>TAAGCCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATC--AATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAGGGTTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGCCAATTCCTTCTGCTGGCAAAATGTTGAAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAACGGCTCAATGTGAAGGCTCTCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270804" ref_strand="+" ref_description="SGN-E270804 [cLEM-6-I17]">
      <seq>aaacccagcaagcccagaccccgctctactcgctcttcgtacagtattccggccttcatcgtcggtagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcaaataaattatcgtttaagcgttttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacgacttcgcttgcaagggctgttgcccccactggccatgtttataccttcgatttccatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15836" stop="18619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16136" g_stop="16214" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17862" i_length="1648">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17863" g_stop="18319" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="536" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E270804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16136" e_stop="16214"/>
          <exon e_start="17863" e_stop="18319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAAC</genome_strand>
        <mrna_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370701" ref_strand="+" ref_description="SGN-E370701 [TUS-28-F2]">
      <seq>aaacccagcacgcccagaccccgctctactcgctcttcgtacagcattccggccttcatcgacggcagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcacataaattatcgtgtaagcgtcttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggggcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccacattctttatatagctgatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15836" stop="18482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16136" g_stop="16214" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17862" i_length="1648">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17863" g_stop="18182" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="399" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E370701" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16136" e_stop="16214"/>
          <exon e_start="17863" e_stop="18182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAG</genome_strand>
        <mrna_strand>AAACCCAGCACGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGCATTCCGGCCTTCATCGACGGCAGCATCGGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCACATAAATTATCGTGTAAGCGTCTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGGGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCACATTCTTTATATAGCTGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746610" ref_strand="+" ref_description="SGN-E746610 [GI|47104140]">
      <seq>aacccagcaagcccagaccccgctctactcgctcttcgtacagtattccggccttcatcgtcggtagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcaaataaattatcgtttaagcgttttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacgacttcgcttgcaagggctgttgcccccactggccatgtttataccttcgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgagggattccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaccttggcttgtcattccttctgctggcaaaatgttgaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacagcgctcatgtgaagcactcaaatcacagtttacagatataagaacatttgaagtacttcttcgcacctatgaagttagacaaaagatactagagagctgcccagtaaatgaaggagattctattgagcgtcctccacggaagaggaggcagggttctgctgaaggaagcaatgggactgaatgctcctcttctcctgcggtggtgattaggccttctggtgaggcaagaggtcatacaggctatttgacatttgccagactcaaatgttttgtgtaatgtgttttgatgaatatccagttcttgtggtcgagtacactgttcgttctttagatgttgtgcttatttttcttcttgattctacaattagatatcagacaattttgtcttgagatttaacaaaaaggaaaagaatcgcttctattcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="15837" stop="20246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16137" g_stop="16214" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16215" i_stop="17862" i_length="1648">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17863" g_stop="18338" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="554" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19215" g_stop="19459" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="799" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19460" i_stop="19554" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19555" g_stop="19948" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="1193" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1194" polyA_stop="1204"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E746610" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1193</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16137" e_stop="16214"/>
          <exon e_start="17863" e_stop="18338"/>
          <exon e_start="19215" e_stop="19459"/>
          <exon e_start="19555" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAGGTAAGTTATTTTCCTGGAATCTTGGTCTCATTCAGTTTAAAACACTGCTATAGGAACTACAGACTCTCATGTGGCAAGTGTTTTTGATTTCGTAGATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</genome_strand>
        <mrna_strand>AACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG...............................................................................................ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370700" ref_strand="+" ref_description="SGN-E370700 [TUS-28-F2](-)">
      <seq>cctcaaccatggcttgtcattccttctgctggcaaaatgttgaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacagcgctcatgtaaagcactcaaatcacagtttacacatataagaacgtttacaggacttcttcgcacctatgaagttagacaaaagatactagagagctgcccagtaaatgaaggagattttattgagcgtcctccacggaagaggaggcagggttttgctgaaggaagcaatgggactgaatgctcctcttctcctgcggtggtgattaggccttctggtgaggcaagaggtcatacaggctatttgacatttgccagactcaaatgttttgtgtaatgtgttttgatgaatatccagttcttgtggtcgagtacactggtcgttctttagatgttgtgcttatttttcttcttgattctacaattagatatcagacaattttgtcttgagatttaacaaaaaggaaaagaatcgctaaaattcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="19033" stop="20236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19333" g_stop="19459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19460" i_stop="19554" i_length="95">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.473" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19555" g_stop="19948" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="521" r_length="394" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E370700" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19333" e_stop="19459"/>
          <exon e_start="19555" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAGGTAAGTTATTTTCCTGGAATCTTGGTCTCATTCAGTTTAAAACACTGCTATAGGAACTACAGACTCTCATGTGGCAAGTGTTTTTGATTTCGTAGATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</genome_strand>
        <mrna_strand>CCTCAACCATGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTAAAGCACTCAAATCACAGTTTACAC...............................................................................................ATATAAGAACGTTTACAGGACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTTTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTTTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGGTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTAAAATTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738586" ref_strand="+" ref_description="SGN-E738586 [LC14AH07]">
      <seq>ggttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcaattgaatttccagtttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttngtggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggctttcaatctgactaaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23358" stop="26054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23658" g_stop="24260" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24261" i_stop="24928" i_length="668">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24929" g_stop="25094" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="769" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25335" g_stop="25420" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="855" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25711" g_stop="25754" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="899" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E738586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23658" e_stop="24260"/>
          <exon e_start="24929" e_stop="25094"/>
          <exon e_start="25335" e_stop="25420"/>
          <exon e_start="25711" e_stop="25754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAAT</genome_strand>
        <mrna_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTNGTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTTCAATCTGACTAACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736628" ref_strand="+" ref_description="SGN-E736628 [LC06CB03]">
      <seq>ggttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcaattgaatttccagtttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23358" stop="25702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23658" g_stop="24260" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24261" i_stop="24928" i_length="668">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24929" g_stop="25094" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="769" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25335" g_stop="25402" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="837" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E736628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23658" e_stop="24260"/>
          <exon e_start="24929" e_stop="25094"/>
          <exon e_start="25335" e_stop="25402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGAC</genome_strand>
        <mrna_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348124" ref_strand="+" ref_description="SGN-E348124 [cTOF-27-C1]">
      <seq>ttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctntatgtggggatttcgtcttcatccgatacaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23360" stop="25280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23660" g_stop="24271" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="24980" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="650" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E348124" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23660" e_stop="24271"/>
          <exon e_start="24942" e_stop="24980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</genome_strand>
        <mrna_strand>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTNTATGTGGGGATTTCGTCTTCATCCGATA-CAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271602" ref_strand="+" ref_description="SGN-E271602 [cLEM-23-F10]">
      <seq>tcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23367" stop="25261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23667" g_stop="24271" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="24961" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="625" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E271602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23667" e_stop="24271"/>
          <exon e_start="24942" e_stop="24961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACT</genome_strand>
        <mrna_strand>TCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346302" ref_strand="+" ref_description="SGN-E346302 [cTOF-23-B24]">
      <seq>gtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaagttactctttctcctctccgcttcttcatgtgttntatttttattggtattttgaaaattcagtattttcctttctatcctgctttgattgctgntattgtgcatacatctttgatcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23384" stop="24692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23684" g_stop="24392" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E346302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23684" e_stop="24392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTAC</genome_strand>
        <mrna_strand>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTNTATTTTTATTGGTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGNTATTGTGCATACATCTTTGATCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476027" ref_strand="+" ref_description="SGN-E476027 [cSTB-43-G19]">
      <seq>cctacctgctgccaatataaacagcagatatatgtataattgaatgtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaacgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctgtagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23411" stop="24404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23721" g_stop="24104" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="416" r_length="385" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E476027" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23721" e_stop="24104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAA</genome_strand>
        <mrna_strand>ATGTATAATTGAATGTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAACGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTGTAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414425" ref_strand="+" ref_description="SGN-E414425 [STM-19-D1]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctgtagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctntatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaaatgttttaacgaacatcagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23436" stop="25308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23735" g_stop="24271" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25008" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="606" r_length="68" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E414425" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23735" e_stop="24271"/>
          <exon e_start="24942" e_stop="25008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGT-AATGTTCTAACGAACATCAGTCTTG</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTGTAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTNTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAAATGTTTTAACGAACATCAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472569" ref_strand="+" ref_description="SGN-E472569 [cSTB-29-O17]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23436" stop="25278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23735" g_stop="24271" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="24978" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="575" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E472569" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23735" e_stop="24271"/>
          <exon e_start="24942" e_stop="24978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACAT</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473825" ref_strand="+" ref_description="SGN-E473825 [cSTB-33-L12]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23436" stop="24305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23735" g_stop="24005" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E473825" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23735" e_stop="24005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATC</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456172" ref_strand="+" ref_description="SGN-E456172 [cSTS-28-B18]">
      <seq>gtcaaccatcaatggtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcaccccattgggtaatgttttaacgaacatcagtcttgggagagttagcagtttccttcactcacacaatcaaagccatggaaccatttttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttgggattgtatcttctctggttcccattgttggntggagtagcattagcatcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23450" stop="25701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23750" g_stop="24271" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25094" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="679" r_length="155" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25335" g_stop="25401" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="748" r_length="69" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E456172" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23750" e_stop="24271"/>
          <exon e_start="24942" e_stop="25094"/>
          <exon e_start="25335" e_stop="25401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCATCAAT-GTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCA-CACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAG-TAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTT-GGATTGTATCTTCTCTGGTTCCCGTTGTTGG-TGGAGTAGCATTAGCATCAATGA</genome_strand>
        <mrna_strand>GTCAACCATCAATGGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACCCCATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGGATTGTATCTTCTCTGGTTCCCATTGTTGGNTGGAGTAGCATTAGCATCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468646" ref_strand="+" ref_description="SGN-E468646 [cSTB-5-O8]">
      <seq>aaccatcaatgtccatataagctgattcgaactacatatagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcaacattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgttaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccagcgactgttacggcctcacaatttggctgtgggactttgctaatactctatatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactatctgcaattcacacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23503" stop="25280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23753" g_stop="24271" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="24980" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="559" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E468646" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23753" e_stop="24271"/>
          <exon e_start="24942" e_stop="24980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</genome_strand>
        <mrna_strand>AACCATCAATGTCCATATAAGCTGATTCGAACTACATATAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAACATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTTAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCAGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTATATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTATCTGCAATTCACACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290782" ref_strand="+" ref_description="SGN-E290782 [cLET-10-E19]">
      <seq>tcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23497" stop="25390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23797" g_stop="24271" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25090" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="624" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E290782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23797" e_stop="24271"/>
          <exon e_start="24942" e_stop="25090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGC</genome_strand>
        <mrna_strand>TCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470534" ref_strand="+" ref_description="SGN-E470534 [cSTB-18-J9]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23524" stop="25362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23824" g_stop="24271" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25062" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="569" r_length="121" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E470534" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23824" e_stop="24271"/>
          <exon e_start="24942" e_stop="25062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCA</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470486" ref_strand="+" ref_description="SGN-E470486 [cSTB-18-M10]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23524" stop="25361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23824" g_stop="24271" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25061" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="568" r_length="120" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E470486" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23824" e_stop="24271"/>
          <exon e_start="24942" e_stop="25061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTC</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470415" ref_strand="+" ref_description="SGN-E470415 [cSTB-18-K21]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctgaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23524" stop="24507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23824" g_stop="24207" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E470415" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23824" e_stop="24207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGAC</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTGAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285222" ref_strand="+" ref_description="SGN-E285222 [cLER-20-P9]">
      <seq>acatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23529" stop="25336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23829" g_stop="24271" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25036" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="538" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E285222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23829" e_stop="24271"/>
          <exon e_start="24942" e_stop="25036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACAC</genome_strand>
        <mrna_strand>ACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278178" ref_strand="+" ref_description="SGN-E278178 [cLER-9-M5]">
      <seq>cgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23778" stop="26033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24078" g_stop="24271" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25094" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="347" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25335" g_stop="25420" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="433" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25711" g_stop="25733" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="456" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E278178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24078" e_stop="24271"/>
          <exon e_start="24942" e_stop="25094"/>
          <exon e_start="25335" e_stop="25420"/>
          <exon e_start="25711" e_stop="25733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGG</genome_strand>
        <mrna_strand>CGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469671" ref_strand="+" ref_description="SGN-E469671 [cSTB-13-J7]">
      <seq>tgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccattgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaatcaatcgcgtaatgtatttagcaaaaaattcatggataaagaggaggaggcattggacaatatcaatttgttctctacgatcacaatcatttcattcatccttttggtacctgttgccattttgatggaaggggtcaagcttactccatcctatctacaatatactgctgcaagccatggtttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="23817" stop="26480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24117" g_stop="24271" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24942" g_stop="25094" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="308" r_length="153" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25335" g_stop="25420" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="394" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="479" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="602" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26268" g_stop="26286" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="621" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E469671" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24117" e_stop="24271"/>
          <exon e_start="24942" e_stop="25094"/>
          <exon e_start="25335" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATG</genome_strand>
        <mrna_strand>TGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCATTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAATCAATCGCGTAATGTATTTAGCAAAAAATTCATGGATAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTACGATCACAATCATTTCATTCATCCTTTTGGTACCTGTTGCCATTTTGATGGAAGGGGTCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGCCATGGTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690254" ref_strand="+" ref_description="SGN-E690254 [LH_Ea03A12]">
      <seq>catgtaaattgggtaatgttttaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttctgcgctgtttcttgcagagcggccatctccttggattgtgtcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccagtcgcgtaatgtatttagcaaaaaattcatggtcaaagaggaggaggcaatggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtctcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgtgtgacaagtgaagaaagtcgtcaaatcctgtagtcataatgctctgtaaagaaaaggtaaaccaaaaacaggaactcgtggattgggttcgagttataggaagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="24675" stop="27431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24968" g_stop="25094" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.732" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25335" g_stop="25420" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="296" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="419" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="497" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="627" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26950" g_stop="27131" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="809" r_length="182" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E690254" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24968" e_stop="25094"/>
          <exon e_start="25335" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGG</genome_strand>
        <mrna_strand>CATGTA-A-ATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCTGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTGTCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAGTCGCGTAATGTATTTAGCAAAAAATTCATGGTCAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCAATGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTCTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGTGTGACAAGTGAAGAAAGTCGTCAAATCCTGTAGTCATAATGCTCTGTAAAGAAAAGGTAAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376887" ref_strand="+" ref_description="SGN-E376887 [TUS-19-H3]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25061" stop="27455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25361" g_stop="25420" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26950" g_stop="27155" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="682" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E376887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25361" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAG</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235541" ref_strand="+" ref_description="SGN-E235541 [cLED-11-P11]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25061" stop="27402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25361" g_stop="25420" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26950" g_stop="27102" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="629" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E235541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25361" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTG</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243541" ref_strand="+" ref_description="SGN-E243541 [cLED-34-A19]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25061" stop="27374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25361" g_stop="25420" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26950" g_stop="27074" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="601" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E243541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25361" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGA</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231182" ref_strand="+" ref_description="SGN-E231182 [cLED-5-G8]">
      <seq>tctggttcccgttgtggggagtacattagcatcaatgacagaggcctttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaattgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25061" stop="26640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25361" g_stop="25420" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25711" g_stop="25795" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="140" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="262" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26340" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="335" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E231182" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25361" e_stop="25420"/>
          <exon e_start="25711" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACC</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTG-TGG-GGAGTA-CATTAGCATCAATGACAGAGGCCT-TTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGT-ATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAA-TTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694094" ref_strand="+" ref_description="SGN-E694094 [LH_Ea03A12](-)">
      <seq>ttagcaaaaaattcatggtcaaagaggaggaggcaatggccaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtctcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgtgtgacaagtgaagaaagtcgtcaaatcctgtagtcataatgctctgtaaagaaaaggtaaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcagaatagtttgagaatccctgtcaataatggaaggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaatactaaaatcaactactaagcgcctatgactgaaacgtgaattattctgatctggctcaaaaagttttggaaattccatgtatcaaaaccaggataccctttaaaagagggaatataatttcaatcctctctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25467" stop="46460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25767" g_stop="25795" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26053" g_stop="26175" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="152" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="230" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="360" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26950" g_stop="27317" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="727" r_length="367" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27318" i_stop="28170" i_length="853">
            <donor d_prob="0.674" d_score="0.81"/>
            <acceptor a_prob="0.000" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28171" g_stop="28259" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="815" r_length="88" r_score="0.506"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E694094" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25767" e_stop="25795"/>
          <exon e_start="26053" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27317"/>
          <exon e_start="28171" e_stop="28259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCA-AGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAG-GCCTATGACTGAAAC-TGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTTATCGTTTGATCATTGTCGATCAGTCCTTTGTTCATACAATAATACCAAGGTCTTAATATGAAAACCATTAATCTACTATTTATTTGCGTTCTTCATGAATACTTTGACTTGAGTTATCCCTTCCATACTAATAGTGAATAGTTTTATAGAAAACCTGTATACCTCCGGGGGAGGAGTAAATTCTGCTTTCCCTACATGGAAGGAGTAAAAGTAATGCATTAACTAGAGAAATTTGCTCAACACTTAGAAGTGGGCTGATTCCATTAAACAAAGTTTGACGGTAAAATACTTTACATTTACATCCGTCAAAAACTTCCCATTTGCAGATTTTCAGCTATCTATTTCCAGTAATACGCTAAAAGCTTCTTCTATCCGAGAACACTGTTTGCCAAAACATGTAGTGGTTAAAGTTTAACAAAAATGACCCCTTTTTCTTCCAGCATTTCCTACAACACATCAAAAATCAACACAGGCTCTCCTTTACCTTCTTACTCCTCCCAATTGTTAGCACGGGGTCCATCGCCAGATTTCCCATCACCTTGGGATCTTTCTTTTTCCCAGTCCTTTCGGGAATCACCAGCTGATGATCTAGTGAAGCCCATCATGGCTTCATGGAAACTGCCACCTACTGGAACTTGAATACGAGTCCGCTCAGATCTTTCAGCACTACGGCTACGACTTCGCTCCCTGCCTTTTCTGTCACCCCATCCAGAACCTCTATTAGGGCTTCTGCTCCTACTTCTATCACGTCTCTGTGAACCCTGCATCATAGTTTCATGGAAGCTTCGACCATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</genome_strand>
        <mrna_strand>TTAGCAAAAAATTCATGGTCAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCAATGGCCAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTCTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGTGTGACAAGTGAAGAAAGTCGTCAAATCCTGTAGTCATAATGCTCTGTAAAGAAAAGGTAAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAGAATAGTTTGAGAATCCCTGTCAATAATGG-A--A-GGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACTAAAATCAACTACTAAGCGCCTATGACTGAAACGTGAATTATTCTGATCTGGCTCAAAAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAATTCCATGTATCAAAACCAGGATACCCTTTAAAAGAGGGAATATAATTTCAATC-CTCTCTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200468" ref_strand="+" ref_description="SGN-E200468 [cLEB-8-N1]">
      <seq>gcacgaggatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25779" stop="27420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26078" g_stop="26175" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="176" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="306" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26950" g_stop="27120" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="477" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E200468" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26078" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATA</genome_strand>
        <mrna_strand>GCACGAGGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376886" ref_strand="+" ref_description="SGN-E376886 [TUS-19-H3](-)">
      <seq>tcattcaacctttgggtaccttctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgagaatccctgtcaataatggaaggatggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaataccaaaatcaactactaaggcctatgactgaaactgaattattctgatctggcggaaaatcatgtattaaaacaggaaaccctttcatataggaatataatttcaatcctctcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="25798" stop="27669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26098" g_stop="26175" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26268" g_stop="26345" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="156" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26683" g_stop="26812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="286" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26950" g_stop="27369" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="706" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E376886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26098" e_stop="26175"/>
          <exon e_start="26268" e_stop="26345"/>
          <exon e_start="26683" e_stop="26812"/>
          <exon e_start="26950" e_stop="27369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTT</genome_strand>
        <mrna_strand>TCATTCAACCTTTGGGTACCTTCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217448" ref_strand="+" ref_description="SGN-E217448 [cLEL-21-P9](-)">
      <seq>atcttcttccaaaacaaccgtttcaccaattaactcccttgggactgctatggctctagcgggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaaaaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgagaatccctgtcaataatggaaggatggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaataccaaaatcaactactaaggcctatgactgaaactgaattattctgatctggcggaaaatcatgtattaaaacaggaaaccctttcatataggaatataatttcaatcctctcttcttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="26473" stop="46460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26773" g_stop="26812" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26950" g_stop="27379" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="471" r_length="430" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27380" i_stop="28247" i_length="868">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28248" g_stop="28265" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="489" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E217448" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26773" e_stop="26812"/>
          <exon e_start="26950" e_stop="27379"/>
          <exon e_start="28248" e_stop="28265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCC-AAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTTATCGTTTGATCATTGTCGATCAGTCCTTTGTTCATACAATAATACCAAGGTCTTAATATGAAAACCATTAATCTACTATTTATTTGCGTTCTTCATGAATACTTTGACTTGAGTTATCCCTTCCATACTAATAGTGAATAGTTTTATAGAAAACCTGTATACCTCCGGGGGAGGAGTAAATTCTGCTTTCCCTACATGGAAGGAGTAAAAGTAATGCATTAACTAGAGAAATTTGCTCAACACTTAGAAGTGGGCTGATTCCATTAAACAAAGTTTGACGGTAAAATACTTTACATTTACATCCGTCAAAAACTTCCCATTTGCAGATTTTCAGCTATCTATTTCCAGTAATACGCTAAAAGCTTCTTCTATCCGAGAACACTGTTTGCCAAAACATGTAGTGGTTAAAGTTTAACAAAAATGACCCCTTTTTCTTCCAGCATTTCCTACAACACATCAAAAATCAACACAGGCTCTCCTTTACCTTCTTACTCCTCCCAATTGTTAGCACGGGGTCCATCGCCAGATTTCCCATCACCTTGGGATCTTTCTTTTTCCCAGTCCTTTCGGGAATCACCAGCTGATGATCTAGTGAAGCCCATCATGGCTTCATGGAAACTGCCACCTACTGGAACTTGAATACGAGTCCGCTCAGATCTTTCAGCACTACGGCTACGACTTCGCTCCCTGCCTTTTCTGTCACCCCATCCAGAACCTCTATTAGGGCTTCTGCTCCTACTTCTATCACGTCTCTGTGAACCCTGCATCATAGTTTCATGGAAGCTTCGACCATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGAAAATAA</genome_strand>
        <mrna_strand>ATCTTCTTCCAAAACAACCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCGGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAAAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708795" ref_strand="+" ref_description="SGN-E708795 [FA36DB08]">
      <seq>cgtggtcaactatgattttccaactggtatagaggactatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattttttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggctaggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgccaatgggaattttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaaatcaccccacttctaagtgttgagcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="28967" stop="27311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28668" g_stop="28297" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28213" g_stop="27612" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="975" r_length="603" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="976" polyA_stop="997"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E708795" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>974</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28668" e_stop="28297"/>
          <exon e_start="28213" e_stop="27612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGG-AATCAGCCCACTTCTAAGTGTTGAGCAA</genome_strand>
        <mrna_strand>CGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCCAATGGGAATTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAAATCACCCCACTTCTAAGTGTTGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745763" ref_strand="+" ref_description="SGN-E745763 [GI|47105107]">
      <seq>gagggagaacggacgggagacatcgtcggaggtgggaatcgtttgtatcagcttcttttatcgtcatcggaaagactttgtcagaggtaattggatactgaagcttgagatggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacccttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaatccagagaccaatactacccaatacgagaagcctgttgctactcctcatgtgggtgctgcacaacataaatcctctgtatctgtaagttcatcagttgagaggccttctcaaagtcaatgttctgaccatggtgacaacagaggtaccaatggtgccttgagcaaactttcctctggagagggtattcagactgcaagagcaaatgagctttcccgcgatgaaacatctgcgcctaaaggttatagtgcttcagctgccgcgagtgacatatctccagatgcctatcgccgtcagcatgaaatttctgtctcaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggtttccttcagagattttgagggagatacatcaagctgggtttcctgctccttccccaatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactgggtctggaaaaactctaggtttcttgcttcctggctttattcttctaaagcaacgtcggagtaatcctcaatcaggccctactattttggttctctcgccaacaagagaattagccacacagatacaagatgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatatggaggcgccccaaaaggccctcagctacgagatctggataggggagttgatattgttgttgctacccctggtcgattgaatgatattttggagatgagaagagttaggctggatcaagtttcttacttggtgttagatgaagcggatcgtatgctggacatgggattcgaacctcagataaggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatggcctaaggaggtccgtagaattgcagctgatctattggttaatccagttcaggttaacattgggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtcatatatggataaacaaaagcgtctagaccagatcttgagatcccaagagcctggatcaaaaatcattatcttctgttcaactaagaaaatgtgtgaccaacttgctcgcaatcttacacacccatttggagctgctgctattcatggtgataaatctcagggtgagagggatcatgtactgagccagttccgcactggcaagtcccccgttcttgttgcaactgatgttgctgctcggggcttggatgtcaaagatatcagggtggtggtcaactatgattttccaactggtatagaggactatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattttttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggctaggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatntgcaaatgggaagtttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaatcagcccacttctaagtgttgaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="37938" stop="27311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37638" g_stop="37555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37554" i_stop="34017" i_length="3538">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34016" g_stop="33683" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="418" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33682" i_stop="32709" i_length="974">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32708" g_stop="32586" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="541" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32585" i_stop="31900" i_length="686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31899" g_stop="31831" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="610" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31830" i_stop="31318" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31317" g_stop="31048" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="880" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31047" i_stop="30377" i_length="671">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30376" g_stop="30026" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="1231" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30025" i_stop="29830" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29829" g_stop="29552" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1509" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29551" i_stop="28672" i_length="880">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28671" g_stop="28297" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1884" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28213" g_stop="27616" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1885" r_stop="2482" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2483" polyA_stop="2499"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E745763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2482</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37638" e_stop="37555"/>
          <exon e_start="34016" e_stop="33683"/>
          <exon e_start="32708" e_stop="32586"/>
          <exon e_start="31899" e_stop="31831"/>
          <exon e_start="31317" e_stop="31048"/>
          <exon e_start="30376" e_stop="30026"/>
          <exon e_start="29829" e_stop="29552"/>
          <exon e_start="28671" e_stop="28297"/>
          <exon e_start="28213" e_stop="27616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAGGTATCATATCTCATTTATACTCGCGATGATTCAGATCTGAGTTGAACTTGCTAGGTTTGGTATTTGACCCCTGATATGTGTTGGTTAACCAGAATGCAGGGTTTTAGATGTTTTATTTTTTTGATTGTCTGGCCTCGATATTGTCGTTATTTTGAAGCTGAACTAGATAGGTTTTGCCTTGAGCTGAAGTTGTTTGGCATTTGAACCCTGTTATGTGTTAATAAATAAAAATTTAGGGTTTTAGATTTTTTTTATCTTTTTGATTGTTTGGCCTCGATGTTCTTGTCCTTTTGAAGTTGAACATGGTAGGTTTGGCCGAGAAGTTGAACTTGTTTGGCATTTGACCGCTGATATGTGTGATAAATAATAATGTAGGGTTTTAGATGGTTTTTAAAAATTGTTTGGCCCCGAAATTGTCATCCTTTGGAAGTTGAACTTGCTATGTTTGCCATTTGACACCTGCTATGTGTTAGTAAACGAGAATGTAGGGGTTTTAGAATGTTTCTTTTATTGTTTGGCCTTGAGTTGAACTTGTTTAGCATTTGACCTCTGCTGTGTGTTAAAAAATTAAAAATGTAGGGGTTTAGTTTTTTAAAATTGTTTGGCCTCGATGTTGTTGTCCTTTTGAAGTTGAACTTGATAGGTTTGACATTTGACCCCTCCTGTGTTTAATAAATAACCATGTAGGGTTTAGATAATTTTTCTTTCGATGTTTGGCCTTGAAATTGTCGTCCTTTTGAAGTTGAACTCGCTAGGTTTGGCATATGACCCCTGCTATGTGTTAATAAACAATAATGTAGGGTTTTAGATTGTTCTTATTTTAAAAATTATTTAGCCTCAATGTTATCGTCCCTTTGAAGTTGAACTTGATAGATCTGGCATTTGATCCCAGCTATGTGTCATTAAATAATAATGTAGAGTTTTAGATGATTTTTTAAGAAAATTGTTTGGCCTCGATGTTGTAGTCCTTTTGAAGTTGAACTTGCTTGGTTTGGCATTTGACCCCATTTACGTGTTAGTAAATGACAATGTAGGTTTTTAGATCGATTTATTTCATTGTTTGGCCTCAATGTTGTGGTTGTTTTGAAGTTGAAGTTACTAGGTTTGGCATTTTGACCCCTGCTACGTGTTTGTGAATGATGATGTAGGGTTTTAGATCATTCTTTTGTTTGTTTTAGGTTTTTGTGACTTTTTTTGTTATTGCTTTGTGTTCCAACAGTTCAAAAGCCTTTGAACTAGTGCAGTGTTGTGAAAAGCGCAGAAAAGAACGCTTAAAGCGCGTTTCAAAGCGAAGCGATACCAGTGCCCTTCTTTCTCCTGAGGCGATGCGATCTGAAAAAGGCGCTCGCTTCAGATAACGTTGCGAGAAGCGACACTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAGCGACAATTAGTTTTTTTTTTTAAAAAATTAGTTAAAAAAATCTGAAATATACAATATAACTTAATTTTTCTTTCATGACTCTTCTTTCGCTTCTTCTCTCTTCACGACCACGACTGAGACTGCGTCTCTCTTCACACATCGACTGCGACTGCATGTAAGTGTTAGCCGATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATACAATCTTCGCCTTTGTTTCATCTCTGTGAGTTTCTTTTCTCTTCAAGAAATGTACGAAGGAGAAAGTCTCACTTATGGTGATGTTTCTGTGGCAAGTGGTGTTGAGGAGAATATTTATAGTTTTAGGGGGAGTACTTTAAGGGGCAAGGAAAGAGGAGTTGGAGGTTCTAGTTCAACTCGAAACCTTGTTGATGAGCCTTCTGATGATGAAGAAGATGATGACCAAGTAGAACCCTTGGTTATGGCACTTGAAGAGTTTGAGGATCTTGTTGAAGAATAGGAGTTTGAGTCTTCGTGATTTAATTATGTTTTTATTTTTGCTTTATATGTTATGACTTATGAGTATTATTGACTATCTATTTTCTTTTAATCTAAGACTATATTACCTCTATTTAGTTATTTTTTTATTTTTATTTTTATACTAATTTCGCTTTTTTTTAAAAAAGCGTGCGCTTTGCTTCACGCTTCTCGCTTCTGTGAAGCAAGCCCTCGTCGCTTTTTTCCGCTTATCGCTTCCCAAAACACTGAACTAGTGCCACTTGCGTGAATATAATGCTTTTGTGCATGTTTGAGTTGAGAGTAGTCCACTTTCGTGTTATTGTAGTCAGTAGCGTATGCAAGATTTTTCAAAAGTGATGTTGACATTTAAAGAAGAGAACGGATTAGATGAAATAATGAAATTTTTTAACCTTAGGGTCTTAAATCTATATTGACTAATCAAGTTAAAAATTGGTTAAATAAATTTAATGTTTACAATTTATGCAAAAGCGGAGAGCTTGGTTGATGGGTTTTGATTTGATCCTTTAACAATTAAGCGCTTCAAATTAAAAGAATCACAGAATCACACGAATTCACTGAGTAGGAGGTTCAAAGTCGGGGAAAATGCAACATAAGTTATGAGCTTAACCAGGGACCATAGAGCACTGTGTGTTATCATTCAATAATATATGTTCACGTACTCTATTTTTTCAGGTTTTATATATATAAGAAATTTTTGATGAATCAGTGTCAGATGACACCCCTTGCCACAAGGTGCATCCAGCCTGTAGTCTCAAGGGAAAACGGCAGTCATGTTAATTTATTCCCATAGATAGTTAGTGTTCCTGCTCTCCGAGTGTTGTGTAATGGCCATCCATTTATTCAGTTTTACGTATTTGACCTCAAGTGTTTTGTTGTCTAGGGGGAGGGTAGCGTAATGGTCAGACCCTTTACCCTACGGTATTATTGGAGGATTGAATCACCATGGTAGCAAGGTCGGAAGGGGTCACAGTTGGTTGTCTGGGTTGGGTTTCTTTGGTTAGTAAGGGGGTTGGTATGCAAAACAATTGTGTGCTGCCTTTTGCTTTTATCAGTATAACTGTGCGAGGGGCACAGTTACTTGTGTTGCTTTGTCTCTGTTAAGAACATATCTACTACTCTTGAAGTAACATGTTCTCTTCCCTTGTGTAGTTCATCTTCTTCTCTCTTTTGCGCAGCCTTATTTAGCTGTTTTGGCTGTAGTACATTTTTAGTACTCCCTCTGTTTCAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAATAAAAGAAAGAAGACTTTTAATCTTGTGATTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTGATCTTGTGGTCTTAAACATGCCACGTGGAAATTTAAAGTTAAAGTGTTGCAAAAAAAAGAAATGCGTCATTCTTTTTGAAACAGACTAAAAAGAAAATAGGGTCATTTTCTCGAAACTGAGGGAGTTCCATCTTATAAACACTGTCAATCATTCAGGTGATGGAATATAACACATGAAAAATGTGATTCATGGATTTCTTTATAGTATTATTGCTTTGTTTAACTCTTATTCTCATTTCATGCTTTAAAGTCGTTTCGTCTTTTCTGGTGCCAGAGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAGGTATTACTGTAGTCCGTTATTTTGTTTTAATCTCTTTTGGAACATCTGTAGCGAAGAGTTTACTTATTCATAAAGGGTCAAGTGTTCTTCTGTTAATTTCAATGGCTGCTGGAGGTCCATTGCAGTACTCATACAATTTTTCCCTCTGTACCTTGACGCAGATGCGATATTTGCTCCAGTGTGGAGCTAAATGTCGTACGCTGTGCAACCCTCTTTTTGGTCTTCCTTGTATTTGGAATTCCCTTATTTGGTGGACCAAATTTTGAAGGGCTTTCTGAATCATCCTTGTTCATGGCTGGGACTGCTGTTGGTGGTGTTAGTCTGCCACATGGTTTGACATGAAGAAGAGGCTTCCTCCTGCTCTTGCTTGCATATGCAAGTGTTGGCTGCCTGCGTAAGGGGGATATGCTTCTTCTTGTGTTAGCCACTTAAAAAAAACGTAGAAATAATCTAGGTGTAACTTCTTAGCTTGTATAATTGCTGACAGAGGTTTTCCAACTTTTACATTTCCAGATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACGGTATGAATTGTTATTTGACTATGTTTTGTAAAAAGTTTGATTCCAGAAGTAGATTTATCTTTTGATTTCCAATTACTGATGCAGGGCTAACTAATGGTTTAATTGTAAAAACCAAAAGTTAGCTTGGTCTGTCACATTTTTTTGCTATACTCCTTTACCATAATTTTCCTGTTAAGTCTGATTCTAAAGATCTCATCTTTTCGAATAGTTGTCTGGCCAAAAGTGAAACTTAGAGGGTAATCATTGTGTTTCTCATTTTGTGGTATCAAACACATATCTGCTTAATCCTATGCAATCTCTTTAAACGGTTATATGCTTCTTTTTCGTCAAACATAATTTTTGTTAACGTAAATAACCATGCACGAAGATAATGTTGTGCACTATTACGAAAAGGGGAAGGCCCCATTTACATTACTTGACAAAAAAACGAATGATTTTATTAAAACCTTTACAGAAGTATACTATTTTACACCTTCCCGTAGAACAATCAACAAATGTTGACATGCTAATGTTCAGGTCAGATGAACCAAGTGAATGTGTGTTTTAATTTTTTTGAAAATTGGCAATGCTGTATGGTTTTTGGTTAGTGTCTATATAGAGGGGGGACCCAACAGGCCCTCTGCTTTGACAATTTTCTTGAGAATTGACAATGCTGTATGTTTTTTGGTTAGTGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAGGTGCATTTCTGTTCTGTTCTCTTTTCTTGGACCGTGCTCATTAAAAATGCCTAAGAGTCTCTCTCTCCTCTAAATTGGATTAGAGGACTGAGATGTCATGGTAGAATGTGCGTCCCTTATTATCCCTGAGCACCAAGGGAGAACCTGTACTTGACATAATGAGGTTACATCATGTTTAATTAATTGTCATGTGCAGTACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAGGTTGGTGGAACTAAGAATCTTATAGTGTGCTTGATTATTTGTGGGTCACGTTTAATTCTCTTTTAATGGCTAACTGAATTAAAGAATATATATGCCTTCAACTTTTTATGGAGCGAGCATTTGGACCGACATATATTCCTTGCATGCTCTTCCCATGTTATTTCCCGTTAATCGATGGGGTGCAAACAGGCGTGTGGGGGTGGAGTTGTGTTTCTGATTTTGTTTTGGGTACCATTTGGTGATTTTGGGAGAGTGTAGGCCAAAAGTTACAACTTTGTACCTTTCATGTGTGATGTCATGATTTAGTTTGCAATGTAGATGGATGAGTAAAGTTCACATGGTATCCTTTCAATAAGATCTACTCTCCTAAGCTCCTTTCTTTTTCCATTTAGCTTTTATTGTTTGTTTGGGTTTGTAACTATGTGACCACTGAAAGTGGAAGAGCTATTTGATGAGACTTCATCAGATGATTGTACAAGAAGGAACTAGATAGATTAGAGAGAAAAAAAGAACAGATAAGAAAAAATGATAAATAAATAAAGGAATTTTGGGTTAGGTTAGCATCCGAGTTTGGGGCGGTATGGCATGGTTTGACATCATGCTGGAATTTTGTGGTTTTGACATTTGAAATATGCTCGAGCAGAGGTACCTCCAGAAACATTTTCTCTACCTTCATAAGGTAGAGGTAAGGTCTATGTACACTCTACCCACCCATCCCCTACCAGACCCCATGTGGGATTTCACTGGGTTATGTTATTGTACAATTAAAATATTTATGCATTCTTATAAATACTCTTTAAAGAGTAGTTTCTCCTAATATTTTTGGTAGTGGGATTTCTCTTCTATATAAGTTAAACAATTGATGAAACATTTGTGGCAGGGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</genome_strand>
        <mrna_strand>GAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG....................................................................................................................................................................................................TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATYTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540459" ref_strand="+" ref_description="SGN-E540459 [TUS-60-L24](-)">
      <seq>atgatgctggttacggtggacgagatggagcaaggggtggttgggaagccccttcatctgaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctatgatgctcccgctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagctaagtcgtagccgtagtgctgaaagatctgagcggacttgtattcaagttccagtaggtggcagtttccaggaagccatgatgggcttccctagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctatcaattgggaggggtaagaaggtaaaggggagcccgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaacccctacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgcaaatgggaagtttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaatcagcccacttctaagtgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="28696" stop="27311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28297" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28213" g_stop="27616" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="698" r_length="598" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="739"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E540459" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28297"/>
          <exon e_start="28213" e_stop="27616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</genome_strand>
        <mrna_strand>ATGATGCTGGTTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCTGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTATGATGCTCCCGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCTAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTTGTATTCAAGTTCCAGTAGGTGGCAGTTTCCAGGAAGCCATGATGGGCTTCCCTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTATCAATTGGGAGGGGTAAGAAGGTAAAGGGGAGCCCGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCCCTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540462" ref_strand="+" ref_description="SGN-E540462 [TUS-60-L24]">
      <seq>atgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaagggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgcaaatgggaagtgtttgacggatgttaatgtaaagtattttaccgtcaaactttggttaatgggatcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="28696" stop="27332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28297" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28213" g_stop="27632" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="682" r_length="582" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E540462" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28297"/>
          <exon e_start="28213" e_stop="27632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCC</genome_strand>
        <mrna_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAAGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTGTTTGACGGATGTTAATGTAAAGTATTTTACCGTCAAACTTTGGTTAATGGGATCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288762" ref_strand="+" ref_description="SGN-E288762 [cLES-17-G21]">
      <seq>tgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaagaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="28695" stop="27470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28395" g_stop="28297" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28213" g_stop="27770" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="543" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E288762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28395" e_stop="28297"/>
          <exon e_start="28213" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTT</genome_strand>
        <mrna_strand>TGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAAGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440529" ref_strand="+" ref_description="SGN-E440529 [cSTA-17-E16]">
      <seq>cttatttggtgttagatgaagcggatcgtatgctggacatgggattgggacctgagataaggaagattgtgaaggacgtgcctacgcgacggcagacactgatgtacacagcaacatggccaaaggaggtccgcaaaattgcagctgatctattggttaatccagttcaggttaacattgggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtcatatatggataaacaaaagcggctagaccagatcttgagatcccaagaacctggatcaaaaatcattatcttctgttcaacaaagaaaatgtgtgaccaacttgctcgcaatcttacacgcccatttggagctgctgcaattcatggtgataaatctcagggtgagagggatcatgtactgagccagttccgcactggcaagtcccccgttcttgttgccactgatgttgctgctcggggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="30546" stop="29267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30246" g_stop="30026" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="29830" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29829" g_stop="29567" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="484" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E440529" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30246" e_stop="30026"/>
          <exon e_start="29829" e_stop="29567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAGGTGCATTTCTGTTCTGTTCTCTTTTCTTGGACCGTGCTCATTAAAAATGCCTAAGAGTCTCTCTCTCCTCTAAATTGGATTAGAGGACTGAGATGTCATGGTAGAATGTGCGTCCCTTATTATCCCTGAGCACCAAGGGAGAACCTGTACTTGACATAATGAGGTTACATCATGTTTAATTAATTGTCATGTGCAGTACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGA</genome_strand>
        <mrna_strand>CTTATTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTGGGACCTGAGATAAGGAAGATTGTGAAGGACGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCAAAGGAGGTCCGCAAAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG....................................................................................................................................................................................................TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGGCTAGACCAGATCTTGAGATCCCAAGAACCTGGATCAAAAATCATTATCTTCTGTTCAACAAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACGCCCATTTGGAGCTGCTGCAATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCCACTGATGTTGCTGCTCGGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571299" ref_strand="+" ref_description="SGN-E571299 [12333]">
      <seq>atactacccaatacgagaggcctgttgctacttctcatgtgggtgctgcacaacataaatcgtctgtatctgtaagttcatcagttgagaagccttctcaaagtgaatgtcctggaccgtggtgacaacagaggtaccaatggtgcattgagcaaactttcctctggagagggcattcagactgcaaaagtaagtgagctttcccgcgatgaaacatctgcgccaaaaggttatagtgctccagctgctgcaagtgacatatctccagatgcctatcgccgtcagcatgaaatttctgtcacaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggtttccttcggagattttgagggagatacatcaagctgggtttcctgctccttccccaatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactgggtctggaaaaactttgggtttcttgcttcctggcttttttcttctaaagcaacgtcggagtaatcctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="34161" stop="30850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33861" g_stop="33683" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33682" i_stop="32709" i_length="974">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32708" g_stop="32586" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="303" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31900" i_length="686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31899" g_stop="31831" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31830" i_stop="31318" i_length="513">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31317" g_stop="31150" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="540" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E571299" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33861" e_stop="33683"/>
          <exon e_start="32708" e_stop="32586"/>
          <exon e_start="31899" e_stop="31831"/>
          <exon e_start="31317" e_stop="31150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCT-GACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAGGTATTACTGTAGTCCGTTATTTTGTTTTAATCTCTTTTGGAACATCTGTAGCGAAGAGTTTACTTATTCATAAAGGGTCAAGTGTTCTTCTGTTAATTTCAATGGCTGCTGGAGGTCCATTGCAGTACTCATACAATTTTTCCCTCTGTACCTTGACGCAGATGCGATATTTGCTCCAGTGTGGAGCTAAATGTCGTACGCTGTGCAACCCTCTTTTTGGTCTTCCTTGTATTTGGAATTCCCTTATTTGGTGGACCAAATTTTGAAGGGCTTTCTGAATCATCCTTGTTCATGGCTGGGACTGCTGTTGGTGGTGTTAGTCTGCCACATGGTTTGACATGAAGAAGAGGCTTCCTCCTGCTCTTGCTTGCATATGCAAGTGTTGGCTGCCTGCGTAAGGGGGATATGCTTCTTCTTGTGTTAGCCACTTAAAAAAAACGTAGAAATAATCTAGGTGTAACTTCTTAGCTTGTATAATTGCTGACAGAGGTTTTCCAACTTTTACATTTCCAGATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAA</genome_strand>
        <mrna_strand>ATACTACCCAATACGAGAGGCCTGTTGCTACTTCTCATGTGGGTGCTGCACAACATAAATCGTCTGTATCTGTAAGTTCATCAGTTGAGAAGCCTTCTCAAAGTGAATGTCCTGGACCGTGGTGACAACAGAGGTACCAATGGTGCATTGAGCAAACTTTCCTCTGGAGAGGGCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAAAGTAAGTGAGCTTTCCCGCGATGAAACATCTGCGCCAAAAGGTTATAGTGCTCCAGCTGCTGCAAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCGGAGATTTTGAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTTTGGGTTTCTTGCTTCCTGGCTTTTTTCTTCTAAAGCAACGTCGGAGTAATCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584084" ref_strand="+" ref_description="SGN-E584084 [9905]">
      <seq>ttctcaaagtgaatgtcctgaccgtggtgacaacagaggtaccaatggtgcattgagcaaactttcctctggagagggcattcagactgcaaaagtaagtgagctttcccgcgatgaaacatctgcgccaaaaggttatagtgctccatctgctgcaagtgacatatctccagatgtctatcgccggcagcatgaaatttctgtcacaggaggtgatgtgccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="34067" stop="31583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33767" g_stop="33683" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33682" i_stop="32709" i_length="974">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32708" g_stop="32586" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="208" r_length="123" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31900" i_length="686">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31899" g_stop="31883" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="225" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E584084" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33767" e_stop="33683"/>
          <exon e_start="32708" e_stop="32586"/>
          <exon e_start="31899" e_stop="31883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCC</genome_strand>
        <mrna_strand>TTCTCAAAGTGAATGTCCTGACCGTGGTGACAACAGAGGTACCAATGGTGCATTGAGCAAACTTTCCTCTGGAGAGGGCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAAAGTAAGTGAGCTTTCCCGCGATGAAACATCTGCGCCAAAAGGTTATAGTGCTCCATCTGCTGCAAGTGACATATCTCCAGATGTCTATCGCCGGCAGCATGAAATTTCTGTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300691" ref_strand="+" ref_description="SGN-E300691 [cLEW-8-C9]">
      <seq>tcactcataccttcgtatacttttatatataaattatttagcatagtgagtgggagggagaacggacgggagacatcgtcggaggtgggaatcgtttgtatcagcttcttttatcgtcatcggaaagactatgtcagaggtaattggatactgaagcttgagatggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacccttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttctggaatccagagaccaatactacccaatacgagaagcctgacgctactcctcatgtgggtgctgcacaacataaatcctctgcatctgtaagttcatcagttgagaggccttctcaaagtcaatgttctgaccatggtgacaacagaggtaccaatggtgcctagagcaaactttcctctggagagggtcttcagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="37991" stop="33383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37691" g_stop="37555" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37554" i_stop="34017" i_length="3538">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34016" g_stop="33684" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="470" r_length="333" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E300691" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37691" e_stop="37555"/>
          <exon e_start="34016" e_stop="33684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAGGTATCATATCTCATTTATACTCGCGATGATTCAGATCTGAGTTGAACTTGCTAGGTTTGGTATTTGACCCCTGATATGTGTTGGTTAACCAGAATGCAGGGTTTTAGATGTTTTATTTTTTTGATTGTCTGGCCTCGATATTGTCGTTATTTTGAAGCTGAACTAGATAGGTTTTGCCTTGAGCTGAAGTTGTTTGGCATTTGAACCCTGTTATGTGTTAATAAATAAAAATTTAGGGTTTTAGATTTTTTTTATCTTTTTGATTGTTTGGCCTCGATGTTCTTGTCCTTTTGAAGTTGAACATGGTAGGTTTGGCCGAGAAGTTGAACTTGTTTGGCATTTGACCGCTGATATGTGTGATAAATAATAATGTAGGGTTTTAGATGGTTTTTAAAAATTGTTTGGCCCCGAAATTGTCATCCTTTGGAAGTTGAACTTGCTATGTTTGCCATTTGACACCTGCTATGTGTTAGTAAACGAGAATGTAGGGGTTTTAGAATGTTTCTTTTATTGTTTGGCCTTGAGTTGAACTTGTTTAGCATTTGACCTCTGCTGTGTGTTAAAAAATTAAAAATGTAGGGGTTTAGTTTTTTAAAATTGTTTGGCCTCGATGTTGTTGTCCTTTTGAAGTTGAACTTGATAGGTTTGACATTTGACCCCTCCTGTGTTTAATAAATAACCATGTAGGGTTTAGATAATTTTTCTTTCGATGTTTGGCCTTGAAATTGTCGTCCTTTTGAAGTTGAACTCGCTAGGTTTGGCATATGACCCCTGCTATGTGTTAATAAACAATAATGTAGGGTTTTAGATTGTTCTTATTTTAAAAATTATTTAGCCTCAATGTTATCGTCCCTTTGAAGTTGAACTTGATAGATCTGGCATTTGATCCCAGCTATGTGTCATTAAATAATAATGTAGAGTTTTAGATGATTTTTTAAGAAAATTGTTTGGCCTCGATGTTGTAGTCCTTTTGAAGTTGAACTTGCTTGGTTTGGCATTTGACCCCATTTACGTGTTAGTAAATGACAATGTAGGTTTTTAGATCGATTTATTTCATTGTTTGGCCTCAATGTTGTGGTTGTTTTGAAGTTGAAGTTACTAGGTTTGGCATTTTGACCCCTGCTACGTGTTTGTGAATGATGATGTAGGGTTTTAGATCATTCTTTTGTTTGTTTTAGGTTTTTGTGACTTTTTTTGTTATTGCTTTGTGTTCCAACAGTTCAAAAGCCTTTGAACTAGTGCAGTGTTGTGAAAAGCGCAGAAAAGAACGCTTAAAGCGCGTTTCAAAGCGAAGCGATACCAGTGCCCTTCTTTCTCCTGAGGCGATGCGATCTGAAAAAGGCGCTCGCTTCAGATAACGTTGCGAGAAGCGACACTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAGCGACAATTAGTTTTTTTTTTTAAAAAATTAGTTAAAAAAATCTGAAATATACAATATAACTTAATTTTTCTTTCATGACTCTTCTTTCGCTTCTTCTCTCTTCACGACCACGACTGAGACTGCGTCTCTCTTCACACATCGACTGCGACTGCATGTAAGTGTTAGCCGATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATACAATCTTCGCCTTTGTTTCATCTCTGTGAGTTTCTTTTCTCTTCAAGAAATGTACGAAGGAGAAAGTCTCACTTATGGTGATGTTTCTGTGGCAAGTGGTGTTGAGGAGAATATTTATAGTTTTAGGGGGAGTACTTTAAGGGGCAAGGAAAGAGGAGTTGGAGGTTCTAGTTCAACTCGAAACCTTGTTGATGAGCCTTCTGATGATGAAGAAGATGATGACCAAGTAGAACCCTTGGTTATGGCACTTGAAGAGTTTGAGGATCTTGTTGAAGAATAGGAGTTTGAGTCTTCGTGATTTAATTATGTTTTTATTTTTGCTTTATATGTTATGACTTATGAGTATTATTGACTATCTATTTTCTTTTAATCTAAGACTATATTACCTCTATTTAGTTATTTTTTTATTTTTATTTTTATACTAATTTCGCTTTTTTTTAAAAAAGCGTGCGCTTTGCTTCACGCTTCTCGCTTCTGTGAAGCAAGCCCTCGTCGCTTTTTTCCGCTTATCGCTTCCCAAAACACTGAACTAGTGCCACTTGCGTGAATATAATGCTTTTGTGCATGTTTGAGTTGAGAGTAGTCCACTTTCGTGTTATTGTAGTCAGTAGCGTATGCAAGATTTTTCAAAAGTGATGTTGACATTTAAAGAAGAGAACGGATTAGATGAAATAATGAAATTTTTTAACCTTAGGGTCTTAAATCTATATTGACTAATCAAGTTAAAAATTGGTTAAATAAATTTAATGTTTACAATTTATGCAAAAGCGGAGAGCTTGGTTGATGGGTTTTGATTTGATCCTTTAACAATTAAGCGCTTCAAATTAAAAGAATCACAGAATCACACGAATTCACTGAGTAGGAGGTTCAAAGTCGGGGAAAATGCAACATAAGTTATGAGCTTAACCAGGGACCATAGAGCACTGTGTGTTATCATTCAATAATATATGTTCACGTACTCTATTTTTTCAGGTTTTATATATATAAGAAATTTTTGATGAATCAGTGTCAGATGACACCCCTTGCCACAAGGTGCATCCAGCCTGTAGTCTCAAGGGAAAACGGCAGTCATGTTAATTTATTCCCATAGATAGTTAGTGTTCCTGCTCTCCGAGTGTTGTGTAATGGCCATCCATTTATTCAGTTTTACGTATTTGACCTCAAGTGTTTTGTTGTCTAGGGGGAGGGTAGCGTAATGGTCAGACCCTTTACCCTACGGTATTATTGGAGGATTGAATCACCATGGTAGCAAGGTCGGAAGGGGTCACAGTTGGTTGTCTGGGTTGGGTTTCTTTGGTTAGTAAGGGGGTTGGTATGCAAAACAATTGTGTGCTGCCTTTTGCTTTTATCAGTATAACTGTGCGAGGGGCACAGTTACTTGTGTTGCTTTGTCTCTGTTAAGAACATATCTACTACTCTTGAAGTAACATGTTCTCTTCCCTTGTGTAGTTCATCTTCTTCTCTCTTTTGCGCAGCCTTATTTAGCTGTTTTGGCTGTAGTACATTTTTAGTACTCCCTCTGTTTCAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAATAAAAGAAAGAAGACTTTTAATCTTGTGATTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTGATCTTGTGGTCTTAAACATGCCACGTGGAAATTTAAAGTTAAAGTGTTGCAAAAAAAAGAAATGCGTCATTCTTTTTGAAACAGACTAAAAAGAAAATAGGGTCATTTTCTCGAAACTGAGGGAGTTCCATCTTATAAACACTGTCAATCATTCAGGTGATGGAATATAACACATGAAAAATGTGATTCATGGATTTCTTTATAGTATTATTGCTTTGTTTAACTCTTATTCTCATTTCATGCTTTAAAGTCGTTTCGTCTTTTCTGGTGCCAGAGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCA</genome_strand>
        <mrna_strand>TCACTCATACCTTCGTATACTTTTATATATAAATTATTTAGCATAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTATGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTCTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGACGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGCATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTAGAGCAAACTTTCCTCTGGAGAGGGTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395514" ref_strand="+" ref_description="SGN-E395514 [TUS-43-C2](-)">
      <seq>aggggggttttacaaaatttttaaacaaagtgttaccagaacatgctaaaaagcagtgtcccttacttggagtttagtgtgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatttccattagtttattatataccactttttcgccaattatgtaatcagctgattccccccgtactttacttaattatttgtaaatagtaaggtattacgggatttaccttattccttatggacaattttatttttgtatgcacattttagtttgcattttttactgcattttggtcgattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="41398" stop="40455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41098" g_stop="40761" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="371"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E395514" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41098" e_stop="40761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCGTCTT-CAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCT</genome_strand>
        <mrna_strand>AGGGGGGTTTTACAAAATTTTTAAACAAAGTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTTTAGTGTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATTTCCATTAGTTTATTATATACCACTTTTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTTTACTTAATTATTTGTAAATAGTAAGGTATTACGGGATTTACCTTATTCCTTATGGACAATTTTATTTTTGTATGCACATTTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299681" ref_strand="+" ref_description="SGN-E299681 [cLEW-1-O13](-)">
      <seq>tcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgcaaaaaaagggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="42066" stop="40499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41766" g_stop="41688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="163" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41312" g_stop="41210" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="266" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41105" g_stop="40800" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="572" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E299681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41766" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41210"/>
          <exon e_start="41105" e_stop="40800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCAC</genome_strand>
        <mrna_strand>TCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554606" ref_strand="+" ref_description="SGN-E554606 [cTSC-4-N16]">
      <seq>gtagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="42210" stop="40502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41910" g_stop="41856" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="151" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="235" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41312" g_stop="41210" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="338" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41105" g_stop="40802" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="642" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E554606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41910" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41210"/>
          <exon e_start="41105" e_stop="40802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</genome_strand>
        <mrna_strand>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554293" ref_strand="+" ref_description="SGN-E554293 [cTSC-3-N16]">
      <seq>gagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="42191" stop="40502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41891" g_stop="41856" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="132" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="216" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41312" g_stop="41210" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="319" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41105" g_stop="40802" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="623" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E554293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41891" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41210"/>
          <exon e_start="41105" e_stop="40802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</genome_strand>
        <mrna_strand>GAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244869" ref_strand="-" ref_description="SGN-E244869 [cLEF-2-J1]">
      <seq>agttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="42022" stop="40518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41722" g_stop="41688" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41312" g_stop="41210" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="222" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41105" g_stop="40819" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="509" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="527"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E244869" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41722" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41210"/>
          <exon e_start="41105" e_stop="40819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACA</genome_strand>
        <mrna_strand>AGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319853" ref_strand="+" ref_description="SGN-E319853 [cTOB-12-P16]">
      <seq>ggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="43313" stop="40951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43013" g_stop="42989" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="82" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="274" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="370" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="454" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41312" g_stop="41251" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="516" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E319853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43013" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAA</genome_strand>
        <mrna_strand>GGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346980" ref_strand="+" ref_description="SGN-E346980 [cTOF-25-K21]">
      <seq>agacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctncgtgaccctaatgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44427" stop="40960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44127" g_stop="44065" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="135" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="192" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="333" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="384" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="480" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="564" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41312" g_stop="41260" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="617" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E346980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44127" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCG</genome_strand>
        <mrna_strand>AGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTNCGTGACCCTAATGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368632" ref_strand="+" ref_description="SGN-E368632 [TUS-22-B24]">
      <seq>tttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagcttttggtcacgcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44480" stop="41191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44180" g_stop="44065" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="188" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="386" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="437" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41582" g_stop="41499" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="617" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41312" g_stop="41286" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="644" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E368632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44180" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41499"/>
          <exon e_start="41312" e_stop="41286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTT</genome_strand>
        <mrna_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTTTTGGTCACGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204867" ref_strand="+" ref_description="SGN-E204867 [cLEC-14-P11]">
      <seq>ttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcacctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="43343" stop="41251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43043" g_stop="42989" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="112" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="253" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="304" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="400" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41582" g_stop="41551" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="432" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E204867" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43043" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
          <exon e_start="41582" e_stop="41551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGT</genome_strand>
        <mrna_strand>TTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCACCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232839" ref_strand="+" ref_description="SGN-E232839 [cLED-8-I9]">
      <seq>tttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44480" stop="41386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44180" g_stop="44065" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="188" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="386" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="437" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41783" g_stop="41688" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E232839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44180" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG</genome_strand>
        <mrna_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572969" ref_strand="+" ref_description="SGN-E572969 [32206]">
      <seq>aaaaangtctgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatatttggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggtcagcccctctttcctggtgagagtggtgtcgatcagctcgtcgaaataatcaaggttcttggaacaccaacgcgtgaagaaatcaagtgtatgaatccaaattacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44601" stop="41430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44301" g_stop="44065" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="308" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="365" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="506" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="557" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41783" g_stop="41730" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="611" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E572969" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44301" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACC</genome_strand>
        <mrna_strand>AAAAANGTC-TGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTTGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGTCAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTCGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACGCGTGAAGAAATCAAGTGTATGAATCCAAATTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395542" ref_strand="+" ref_description="SGN-E395542 [TUS-43-E18]">
      <seq>cttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaattacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="43344" stop="41431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43044" g_stop="42989" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="254" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="305" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41783" g_stop="41731" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E395542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43044" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACAC</genome_strand>
        <mrna_strand>CTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCC-AATTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244639" ref_strand="+" ref_description="SGN-E244639 [cLED-38-A11]">
      <seq>aagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44574" stop="41443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44274" g_stop="44065" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="282" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="339" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="480" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41906" g_stop="41856" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41783" g_stop="41743" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E244639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44274" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41856"/>
          <exon e_start="41783" e_stop="41743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAA</genome_strand>
        <mrna_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727179" ref_strand="+" ref_description="SGN-E727179 [LA13DH01]">
      <seq>gaaataaatgcaatgaagatcaacgatgacaaagaaagaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtctcatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcgggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggataaaccgtggcaataaaaaaggtcttgcaggacaatagatacaagaatcgggaattgcacactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacaaaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacatacaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttaaagctttggcttacatacatgggataggagtctgccacagggacatcatacctcagaatttactggtcgacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggactgtgggttgtgtcctagctgaactgcttcttgaacaccccctctttcctggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="47184" stop="41589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46884" g_stop="46843" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="135" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="196" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="469" r_length="273" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="541" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="598" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="739" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41906" g_stop="41889" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E727179" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46884" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGC-GGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAG</genome_strand>
        <mrna_strand>GAAATAAATGCAATGAAGATCAACGATGACAAAGAAAGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCTCATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGATAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAATAGATACAAGAATCGGGAATTGCACACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAAAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACATACAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAAAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCATACCTCAGAATTTACTG........................................................................GTCGACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGACTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGAACAC..................................................................................................CCCCTCTTTCCTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263724" ref_strand="+" ref_description="SGN-E263724 [cLEG-60-O24]">
      <seq>gtgacaactattgggggcaaaaatggtgagcctaagcagaccattagttacatggccgagcgtgttgttggacagggttcctttggaattgtgtttcaggccaaatgccttgaaactggagaaactgtggcaataaaaaaagttctacaggataagcgatacaagaatcgggaattgcaaacaatacgccttcttgaccatcctaatgttgtttcactgagacactgcttcttttcaaccacagaaaaggatgagctttatcttaatttggttcttgaatatgtacctgagactgtctaccgtgtgttgagacattacagcaaagcaaaccaacggatgccaatgatttatgtcaagctctatacatatcagattttcagagctttggcttacatacatgggataggagtctgccacagggacatcaagcctcagaatttactggtcaacccacatactcaccagcttaagctctgtgattttgggagtgcaaaagttctggtcaaaggcgagccaaatatttcatacatttgttctcgttactatcgtgcgcctgaacttatatttggagcaacagaatacacatttgcaattgacatttggtctgtgggttgtgtccttgctgaactgcttcttgggcagcccctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44806" stop="41705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="372" r_length="273" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="444" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="501" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="0.88"/>
            <acceptor a_prob="0.947" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42145" g_stop="42005" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="642" r_length="141" r_score="0.894"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41906" g_stop="41899" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="650" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E263724" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42005"/>
          <exon e_start="41906" e_stop="41899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTT</genome_strand>
        <mrna_strand>ACCATTAGTTACATGGCCGAGCGTGTTGTTGGACAGGGTTCCTTTGGAATTGTGTTTCAG....................................................................................................GCCAAATGCCTTGAAACTGGAGAAACTGTGGCAATAAAAAAAGTTCTACAGGATAAGCGATACAAGAATCGGGAATTGCAAACAATACGCCTTCTTGACCATCCTAATGTTGTTTCACTGAGACACTGCTTCTTTTCAACCACAGAAAAGGATGAGCTTTATCTTAATTTGGTTCTTGAATATGTACCTGAGACTGTCTACCGTGTGTTGAGACATTACAGCAAAGCAAACCAACGGATGCCAATGATTTATGTCAAGCTCTATACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAGCCTCAGAATTTACTG........................................................................GTCAACCCACATACTCACCAGCTTAAGCTCTGTGATTTTGGGAGTGCAAAAGTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAATATTTCATACATTTGTTCTCGTTACTATCGTGCGCCTGAACTTATATTTGGAGCAACAGAATACACATTTGCAATTGACATTTGGTCTGTGGGTTGTGTCCTTGCTGAACTGCTTCTTGGGCAG..................................................................................................CCCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252168" ref_strand="+" ref_description="SGN-E252168 [cLEG-8-F7]">
      <seq>gaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagcttttgggggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccattgcaattgacatttggtctgtgggttgtgtcctagctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="46983" stop="41719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46683" g_stop="46662" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="355" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="0.889"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="488" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42145" g_stop="42019" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="615" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E252168" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46683" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGC-TTT---GGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAAC</genome_strand>
        <mrna_strand>GAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTTGGGGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCATTGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238589" ref_strand="+" ref_description="SGN-E238589 [cLED-17-D22]">
      <seq>aatttgtccctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44459" stop="41743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44159" g_stop="44065" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="167" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="224" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42043" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="327" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E238589" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44159" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGT</genome_strand>
        <mrna_strand>AATTTGTCCCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306199" ref_strand="+" ref_description="SGN-E306199 [cLEY-13-F9]">
      <seq>ttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44789" stop="41745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44489" g_stop="44438" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="325" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="397" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="454" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42145" g_stop="42045" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="555" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E306199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44489" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTG</genome_strand>
        <mrna_strand>TTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237538" ref_strand="+" ref_description="SGN-E237538 [cLED-19-H3]">
      <seq>aagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44574" stop="41747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44274" g_stop="44065" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="282" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="339" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42145" g_stop="42047" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="438" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E237538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44274" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATT</genome_strand>
        <mrna_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254778" ref_strand="+" ref_description="SGN-E254778 [cLEG-33-O7]">
      <seq>ccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44800" stop="41765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="69" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="342" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42145" g_stop="42065" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="552" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E254778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTAC</genome_strand>
        <mrna_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474520" ref_strand="+" ref_description="SGN-E474520 [cSTB-36-F16]">
      <seq>cgaggtggaaatggaacctgaaaccaggtcacatcattgtgacaacctattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacataccatgggataggagtctgccacagggaccatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgccagaactaatatttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="47036" stop="41776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46737" g_stop="46662" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="138" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="411" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="542" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42145" g_stop="42076" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="612" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E474520" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46737" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGGGAATGGAAC-TGAAA-CAGGTCACATCATTGTGACGA-CTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATA-CATGGGATAGGAGTCTGCCACAGGGA-CATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAG</genome_strand>
        <mrna_strand>CGAGG-TGGAAATGGAACCTGAAACCAGGTCACATCATTGTGACAACCTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACCATGGGATAGGAGTCTGCCACAGGGACCATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCAGAACTAATATTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258097" ref_strand="+" ref_description="SGN-E258097 [cLEG-48-O24]">
      <seq>tcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44806" stop="41814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="73" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="346" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42916" g_stop="42860" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42145" g_stop="42114" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="507" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E258097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42860"/>
          <exon e_start="42145" e_stop="42114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTG</genome_strand>
        <mrna_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401566" ref_strand="+" ref_description="SGN-E401566 [PPC-4-J11]">
      <seq>gagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="44484" stop="42575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44184" g_stop="44065" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43060" g_stop="42989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="192" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42916" g_stop="42875" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E401566" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44184" e_stop="44065"/>
          <exon e_start="43060" e_stop="42989"/>
          <exon e_start="42916" e_stop="42875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGG</genome_strand>
        <mrna_strand>GAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213855" ref_strand="+" ref_description="SGN-E213855 [cLEC-76-N15]">
      <seq>agcattgcagaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48207" stop="42731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47907" g_stop="47762" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="46967" i_length="795">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46966" g_stop="46843" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="269" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="362" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="422" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44065" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="695" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43060" g_stop="43031" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="725" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E213855" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47907" e_stop="47762"/>
          <exon e_start="46966" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44065"/>
          <exon e_start="43060" e_stop="43031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGG</genome_strand>
        <mrna_strand>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316363" ref_strand="+" ref_description="SGN-E316363 [cTOA-25-I6]">
      <seq>tgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgntnagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48178" stop="43778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47878" g_stop="47762" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="317" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44078" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="730" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E316363" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47878" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACT</genome_strand>
        <mrna_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGNTNAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477847" ref_strand="+" ref_description="SGN-E477847 [cSTD-1-N20]">
      <seq>gaaagaagagcagtatcgcagaagtctataacctgaaaacttggccatacgccattttcacttccactttatttctttcgcgcttagggttttgctgtttcactcacaatttttcgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattgggggaaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcnttcttttcgaccacagaanaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctanccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48189" stop="43791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47918" g_stop="47762" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="351" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="444" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="504" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44091" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="753" r_length="249" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E477847" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47918" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGC-TTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTA-CCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTA</genome_strand>
        <mrna_strand>GAAAGAAGAGCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTTCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGAAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCNTTCTTTTCGACCACAGAANAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTANCCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453533" ref_strand="+" ref_description="SGN-E453533 [cSTS-20-G6]">
      <seq>aaagtgagaaaaaggaaagaagagccagtatcgcagaagtctataacctgaaaacttggccatacgccattttcaccttccactttatttctttcgcgcttagggttttgctgtttcacccacaattttccgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgaacttcttgatcatcctaagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48189" stop="43848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="47762" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="367" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="460" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44148" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="712" r_length="192" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E453533" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAGAAAAATGAAAGAAGAG-CAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCA-CTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG-ACTTCTTGATCATCCT-AGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTG</genome_strand>
        <mrna_strand>AAAGTGAGAAAAAGGAAAGAAGAGCCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACCTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACCCACAATTTTCCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGAACTTCTTGATCATCCTAAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409345" ref_strand="+" ref_description="SGN-E409345 [PPI-13-H6]">
      <seq>agcatccaaagtgagaaaaaggaaagaagagcagtatcgcagaagtctataacctgaaaacttggccatacgccattttcacttccactttatttctttcgcgcttagggttttgctgtttcacccacaattttccgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattgggggggaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaatannaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgctttctttcgacacagaaaaggatgagctctatctaaatttggttctcgaatttgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48189" stop="43849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47941" g_stop="47762" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="372" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="465" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="525" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44149" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="713" r_length="188" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E409345" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47941" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCCACAAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCT</genome_strand>
        <mrna_strand>AGCAT-C-CAAAGTGAGAAAAAGGAAAGAAGAGCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACCCACAATTTTCCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGGGAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATANNAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTTCTTTCGA-CACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316343" ref_strand="+" ref_description="SGN-E316343 [cTOA-25-A6]">
      <seq>tgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaagtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttttctttcgacacagaaaaagatgagctttatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48178" stop="43871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47878" g_stop="47762" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="317" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44171" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="637" r_length="167" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E316343" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47878" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCT-TTTCGACCACAGAAAAGGATGAGCTTTATCTAAA</genome_strand>
        <mrna_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAAGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTTTCTTTCGA-CACAGAAAAAGATGAGCTTTATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395515" ref_strand="+" ref_description="SGN-E395515 [TUS-43-C2]">
      <seq>cagaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctaatattgtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48200" stop="43919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47900" g_stop="47762" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="339" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="432" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="492" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44219" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="611" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E395515" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47900" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACT</genome_strand>
        <mrna_strand>CAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAATATTGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299838" ref_strand="+" ref_description="SGN-E299838 [cLEW-1-O23]">
      <seq>aaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagggacatggcttcgggcagtattatgtcttcagcagctgagcaaacctattactgatgttgagcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagatggacaggggtcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcgggacaagagatacaagaatcgggaattgcagactatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48175" stop="43949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47875" g_stop="47762" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="315" r_length="202" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="408" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44438" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44337" g_stop="44249" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="557" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E299838" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47875" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44438"/>
          <exon e_start="44337" e_stop="44249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTG-GCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG</genome_strand>
        <mrna_strand>AAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGGGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGAGCAAACCTATTACTGATGTTGAGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGATGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCGGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300907" ref_strand="+" ref_description="SGN-E300907 [cLEW-8-N10]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48199" stop="44142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47899" g_stop="47762" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44442" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="487" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E300907" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47899" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTT</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204276" ref_strand="+" ref_description="SGN-E204276 [cLEC-13-J6]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48199" stop="44148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47899" g_stop="47762" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44448" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="481" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E204276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47899" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAAT</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210417" ref_strand="+" ref_description="SGN-E210417 [cLEC-35-C15]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="48199" stop="44170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47899" g_stop="47762" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47043" g_stop="46843" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44497" g_stop="44470" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="459" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E210417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47899" e_stop="47762"/>
          <exon e_start="47043" e_stop="46843"/>
          <exon e_start="46754" e_stop="46662"/>
          <exon e_start="44497" e_stop="44470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAG</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747187" ref_strand="+" ref_description="SGN-E747187 [GI|11320949]">
      <seq>acgaaggacaaaattagtaatatttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtctttcaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggatttggcaaatcatgaatttactgggatctatgaaatcttctcagtatttgtatgatgaagcacaaaatgggattgccagcttttgctgaactttggtatatgccattaatttagacacttgtgctttgtgaaactagccaaaagtgtggcctctgaggtttatccttgtactgatactgctctgtttaggaatgatagggttaccacagaaatttgtatggaaaaagaactgttaagtacatttgatcaaatattgaacaccaagtttgtcgtttaacacttgggttgttgtagttcagtgtggagaaaaacaactcaagagaagttccataagttccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52746" stop="48696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52446" g_stop="52149" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="437" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="630" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="741" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50085" i_stop="49658" i_length="428">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49657" g_stop="49595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="804" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49594" i_stop="49506" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49505" g_stop="49375" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="935" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49374" i_stop="49296" i_length="79">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49295" g_stop="48996" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1235" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E747187" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52446" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50086"/>
          <exon e_start="49657" e_stop="49595"/>
          <exon e_start="49505" e_stop="49375"/>
          <exon e_start="49295" e_stop="48996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</genome_strand>
        <mrna_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTTCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG...............................................................................TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707164" ref_strand="+" ref_description="SGN-E707164 [FA32AH12]">
      <seq>cactaattagtaatatttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52735" stop="49116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52440" g_stop="52149" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="430" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="623" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="734" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50085" i_stop="49658" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49657" g_stop="49595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="797" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49594" i_stop="49506" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49505" g_stop="49416" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="887" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E707164" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52440" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50086"/>
          <exon e_start="49657" e_stop="49595"/>
          <exon e_start="49505" e_stop="49416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTT</genome_strand>
        <mrna_strand>CACTAA-TTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721089" ref_strand="+" ref_description="SGN-E721089 [FC12DA04]">
      <seq>tcggccgaattggttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52697" stop="49186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52411" g_stop="52149" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="261" r_length="260" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="400" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="593" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="704" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50085" i_stop="49658" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49657" g_stop="49595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="767" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49594" i_stop="49506" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49505" g_stop="49486" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="787" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E721089" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52411" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50086"/>
          <exon e_start="49657" e_stop="49595"/>
          <exon e_start="49505" e_stop="49486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGA</genome_strand>
        <mrna_strand>CGGCCGAATTG---GTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576865" ref_strand="+" ref_description="SGN-E576865 [60150]">
      <seq>ggcaatggctgccgcaatttgggcatcttcttcttcgttcgctcgctctctccggcctctcctctgttggaactcgtctctctcccctatcaacttcactcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattggctgtttacgctcaagccaggcgagttttatcttccaaaaccaaaggagatgaaatagctactcctgctgatttgagcttcgaggtgccattgaaaattgtagagtatccagacccgattctaagagcgaagaataagaggattgacaaatttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagctggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatatatggtgatgttgagagaccagactcagttaaggttgacgcactggcacattaatggtgcaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacaggcagttcttttctttgacaaaatgactgacgaagttttggacaccatccgtgaacaatttagtggccgctagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52678" stop="49294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52378" g_stop="52149" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="369" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="562" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="674" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50085" i_stop="49658" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49657" g_stop="49595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="738" r_length="64" r_score="0.889"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49594" i_stop="49506" i_length="89">
            <donor d_prob="0.537" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49505" g_stop="49495" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="750" r_length="12" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E576865" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52378" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50086"/>
          <exon e_start="49657" e_stop="49595"/>
          <exon e_start="49505" e_stop="49495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGG-ACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAA-AAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGG-CGCTAGAAAA</genome_strand>
        <mrna_strand>GGCAATGGCTGCCGCAATTTGGGCATCTTCTTCTTCGTTCGCTCGCTCTCTCCGGCCTCTCCTCTGTTGGAACTCGTCTCTCTCCCCTATCAACTTCACTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTGGCTGTTTACGCTCAAGCCAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCTACTC..............................................................................................CTGCTGATTTGAGCTTCGAGGTGCCATTGAAAATTGTAGAGTATCCAGACCCGATTCTAAGAGCGAAGAATAAGAGGATTGACAAATTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCTGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATATATGGTGATGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGACTCAGTTAAGGTTGACGCACTGGCACATTAATGGTGCAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCTTTTCTTTGACAAAATGACTGACGAAGTTTTGGACACCATCCGTGAACAATTTAGTG.........................................................................................GCCGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559107" ref_strand="+" ref_description="SGN-E559107 [18552]">
      <seq>aaaaggagtaatatttgcatctttggaggtgaaattgcccgttttgttgtgaagcaaatggcaatggctgccgcaatttgggcatcttcttcttcgttcgctcgctctctccggcctctcctctgttggaactcgtctctctcccctatcaacttcactcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattggctgtttacgctcaagccaggcgagttttatcttccaaaaccaaaggagatgaaatagctactcctgctgatttgagcttcgaggtgccattgaaaattgtagagtatccagacccgattctaagagcgaagaataagaggattgacaaatttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagctggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatatatggtgatggttgagagaacagactccgttaaggttgacgcactggacattaatgggtgcaagggtttgacataaagcttgtctgctccttccagcacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52737" stop="49815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52437" g_stop="52149" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="428" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="622" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50115" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="708" r_length="86" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E559107" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52437" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGAT-GTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAAT-GGTACAA-GGTTTGAGAT-AAGCTTGTCTGCT-CTTCCAGCACGAG</genome_strand>
        <mrna_strand>AAAAGGAGTAATATTTGCATCTTTGGAGGTGAAATTGCCCGTTTTGTTGTGAAGCAAATGGCAATGGCTGCCGCAATTTGGGCATCTTCTTCTTCGTTCGCTCGCTCTCTCCGGCCTCTCCTCTGTTGGAACTCGTCTCTCTCCCCTATCAACTTCACTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTGGCTGTTTACGCTCAAGCCAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCTACTC..............................................................................................CTGCTGATTTGAGCTTCGAGGTGCCATTGAAAATTGTAGAGTATCCAGACCCGATTCTAAGAGCGAAGAATAAGAGGATTGACAAATTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCTGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATATATGGTGATGGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAGACTCCGTTAAGGTTGACGCACTGGACATTAATGGGTGCAAGGGTTTGACATAAAGCTTGTCTGCTCCTTCCAGCACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284285" ref_strand="+" ref_description="SGN-E284285 [cLER-16-N5]">
      <seq>gcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaagttgacgcacaggacattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52665" stop="49857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52365" g_stop="52149" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="356" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51233" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="549" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50196" g_stop="50157" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="589" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E284285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52365" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51233"/>
          <exon e_start="50196" e_stop="50157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATG</genome_strand>
        <mrna_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAAGTTGACGCACAGGACATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314261" ref_strand="+" ref_description="SGN-E314261 [cTOA-21-F8]">
      <seq>atggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcanccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52674" stop="50958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52374" g_stop="52149" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="365" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51258" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="533" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E314261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52374" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTT</genome_strand>
        <mrna_strand>ATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCANCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274706" ref_strand="+" ref_description="SGN-E274706 [cLEN-13-D7]">
      <seq>cgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52666" stop="50975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52366" g_stop="52149" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="357" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51275" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="508" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E274706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52366" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAA</genome_strand>
        <mrna_strand>CGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318750" ref_strand="+" ref_description="SGN-E318750 [cTOB-11-A19]">
      <seq>gctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaagtccacgtgtcagtagatattctaggaggattataccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52671" stop="50978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52371" g_stop="52149" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="362" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51278" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="511" r_length="149" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E318750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52371" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAA-TCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTAT</genome_strand>
        <mrna_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAAGTCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310477" ref_strand="+" ref_description="SGN-E310477 [cTOA-9-A9]">
      <seq>tgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcggggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52669" stop="51031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52369" g_stop="52149" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="360" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51331" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="455" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E310477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52369" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGA</genome_strand>
        <mrna_strand>TGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGGGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315010" ref_strand="+" ref_description="SGN-E315010 [cTOB-4-C20]">
      <seq>gctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagccttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagaggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52671" stop="51036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52371" g_stop="52149" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="362" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51336" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E315010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52371" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGA</genome_strand>
        <mrna_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGCCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289883" ref_strand="+" ref_description="SGN-E289883 [cLET-9-A6]">
      <seq>ttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgactattttgacgctaatttgaagaagttaggtgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacatgttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52340" stop="51045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52040" g_stop="51916" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51425" g_stop="51345" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="206" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E289883" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52040" e_stop="51916"/>
          <exon e_start="51425" e_stop="51345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGG</genome_strand>
        <mrna_strand>TTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACTATTTTGACGCTAATTTGAAGAAGTTAGGTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACATGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277988" ref_strand="+" ref_description="SGN-E277988 [cLER-4-O22]">
      <seq>gcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaatgaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52665" stop="51104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52365" g_stop="52149" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="356" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51404" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="378" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E277988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52365" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCT</genome_strand>
        <mrna_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATGAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338085" ref_strand="+" ref_description="SGN-E338085 [cTOE-13-C3]">
      <seq>gcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="52721" stop="51108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52421" g_stop="52149" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52054" g_stop="51916" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="412" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51425" g_stop="51408" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="430" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E338085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52421" e_stop="52149"/>
          <exon e_start="52054" e_stop="51916"/>
          <exon e_start="51425" e_stop="51408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCT</genome_strand>
        <mrna_strand>GCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="-" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>ctatctcgctatatacacaaaaaaaaataaattctgtttttattttgtataaagcgagagaaaattgtatatacacatgtaaaaatatatatcttcgtgttatacacttaattatacaaattacaaacattttacttcaaatattgcagagaaaaaggccaacgaattatacaattgtgaattatataattgcagtgaaatacaattttctctaactttatacaacagaagtgtatatattgtgtttttgtttttgtataaagcgagacaaaaacatatatattcttgccatacacttataattatgcaatatacatacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80265" stop="60421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79991" g_stop="79842" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79841" i_stop="79732" i_length="110">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79731" g_stop="79703" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="178" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79702" i_stop="60868" i_length="18835">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60867" g_stop="60721" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="325" r_length="147" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79991" e_stop="79842"/>
          <exon e_start="79731" e_stop="79703"/>
          <exon e_start="60867" e_stop="60721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCGCTTTATACACAGAAGTGTATAA-TTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAAAATTGCTGAGACCAACGAATTATACAATTGCAGTGAAATACAATTTGTATAAAGCGAGAAAAATATATATAATTTTAATTCGATTCAACTATATGCAAAGCAAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACACTTGTATATGTATAGCGAATTATACGCTAATAATAATACTATTTTAGATTATATAAACCTTACTAATACTGATTTTAAAACTGCAATTACTATAAAAAAGAGCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTTTGAAATTCATGTGCTCTCATGAGTTAATTATAGGATAATAATAAATATATCATTTAATTTACTTGTAGTAGACATGTACGCACTTCAACTTTAGGTATGCATATATTGACACTCAAACTTATATAAATTTATATTGAGCCTAGTGACGTGGCAGTTATTTAAAGTGTAACTAACTTATGTAGAATTACTTCGATAGATAGTAACAGCAATGAGCGAGGAAAGAATGTTTGAGCCTTCGGTTAGAGTTAGCAGTGTATATATATATATATAGCCTTGTATCAATTTCTGTGTAATTTTGTATGATTCTGTGGAATAAGATTCTCCCTATTTTTCTTCCTTCTGTAAATTGCTTTCTTCACCATTTTAGTTCATGCTACCTTTAGCTCAGCCCTAAATCGATGGCATAGATTCATGGTGGCTGCATTTCACAACTTAAACAAATAGACACATGTGTTTTGTGTATATAATACACACAAAACATGAATTGTCACGTAGAACATCATATTAGACATATATGTATAGTTGTTCAACTGATACAACTCTAAATTGCAACCAAAGTTGAAAATCATACATATCTGTTAAAATCAAGTTAATTGACACATTTATGTATTATGTCTAAATTAAAATGGTGACACGTCTGTTTCTCTTCTAACTTGAATGTACCATTTTGGAGTCGTTTAATTGATAGGTTGAGACTAATAATCTGAGATATTAAGCTCCAATTTTTCAAGAGTATCCACCAATAGCATTGATTTTCTTCCTTGTCATTTTAAGGTTCCTCCAATTAATATCTACTGTCAAAACATAAGCAATTTGAACATAAAGAGAGCATGCTGAGGGATTGAGGATAATGTGTATTGATATATACTGTAAAGACAGAATACATGTTTGTAAAATTGAAGCCATTTACAGGCCAAGTATTTCAAATTCTCTAAGCTAAAATCATACAACACAGCAGGAATCGACGTGTAAAAATCTTCCGTGGGGAACAAGACATTTACCACCTTCTACGCCTCCTACCATACCAGTATGCAAAGGCAGCAATTGAAGCAGCCAAAATGACTCCAGCTGTTGCATGCCAAACATGTAAAGGTTTCTCTGTTACAAAAGTGGAACCCGAACTACTGCTGACAACAACAGCCTCCGATGGCTCTGGTTTATCACTCAATGTCAATGCAAATCCTAAACCCTGCGTTTCGAGATCAGACAAGTCCTCAATTGCTGGTTTGAGCCTTGTGATCTTTGCAATAGCCTCATACTCCTCTTTGGTTCCACCCTCTAGAAAAGACCCAACGACGTGACCTTTGTTCACCCAATATGCACCAAAGCTATTCCCCAAGAAATCCCCAAAATGGACTACATCACCAGTACTGTCACCATAGAACTGCCAAGAGAGTGTGAAGACTCTGGAGTAGAAGAATGGCAAGTAGTCAAACTCTGTTGTTTTCTCTGGTTCCATGATTGCAGCAACTGCATGCCTTGCTGACTTCCTTGCAGAATCAACGTGTTCAAGTCTCCGCGTCTCACCGAAAATTTTGACAGGAAAAGTTGCAACATCCCCAACAGCATAGACTGAGCTGTTGCTTGACTGCATTTGGCCATTGACTTTTATCCCTCCTTTCTCAAGAGTAAGTTGCCCTTCAAAGAGGCTGGTATTTGGTCGAATTCCAATGCCTACGATGACCATGTCAGCAGGTAGCTTGGTTCCATCTCTCAAATTCACCGCAGTCATCTACATAAAAGGTCCCCGCATTCAAGCATCATGTCCATTATAACTTCAGTGATATATAAAATTGTGAAATGATGATTAATGTTAGTTCCAGCTTAACAAAGTGACTTGTTAAACGGAGTTCAAGAATATTCACTCTTTCAGTAAAAGTTAACCTTTTCTTATTCAAATAAAAAAGGATAACAAATAGAAGCTGTTTTCAGAAACTAATAAACTGAGTTTGCATTAACAAAGTACCTAGTGAAATTGAGGTTGGAAATGTTCAAGAAGAGGTAAATGAAAAAGCAGTTCAAACAAACACGTCTGCGAACAGCTTTCAAAGAAAACACCACCAAAGTGAAGCAAGCAACAGGCTTTACCTTATCATTGGAGTCGAAATCAAATGATGTCAAGACCGTGCCTTTCACAAACTTAACTCCTTTTGACCGGTAAAATTCTTCGTAGAAACTTGCAATTTTAGGAGTAAATAGGCGGGCCACTAACAACAAAAGAAAAGGGAAGAAAATTAAATGCTTTATAAAATCATTAGAAAAAACAACAGTTTGTTTACTGATGAACTTAAGATAGAACAGCAATGGTTGCACATTTATGGTTTATATCTGTAAGTAACTCTTGGACTTTGGGTTTTGAGAATTAAGAAACAAATCAGTTTTTCTCATACATAAGCTTTCAATCGATGATTTCATATTTTGAGGAAATATGAGGGCAGAAGTCCCACATTCTGATCAATTTTCATATCTTTATAGCATTTGTTGATTACTGAGATCACTGTTTTCTGTACTAATAGCATGGTTTGGAGAGTAAGGCATGTACTAGATTTCAGATTGTGGTTTGTATTTTCTGGATAAAACGCAACTACTAAAGTTATACTAATACATAATTCTCTAGAGAGGAGAAAACACAGTTCTTACTTCTGATATATTACAAGCAATCTAAAGAAACTCGAGTAAGAAACAGAAAAGAAAGTTCTCCAACTTCACAAAAGAATATAATTTACAAGCAACCTAAAGAAACTCGAGTTAAAAAAAGAAACGAAAGCTTTCCATCTTCACAAAAGAATACTTACTACAGTGTGCTTCTGGAAAGACCATGGTGACATTTATTTTGCCGATCACCAAAGAAGCAGCACATTCCATTCCTATGTAGCCACCACCAATTACAACAGCATTGCCACCACCGCTAGATTGCATCACATTAACCAGCCTGTTTGCATCAGCCAAATCCCGTAAATAACATACACTCTCAGCATCTGAGCCACTCACTCCAAACTCTTCAAGCTTCAAAGCCTAACAAAACATGCCAACCAAAAGTCAGAGACTTCATAAAATTCAATTTCATTGTTCACTAGGGAGCTTGGTCTTTGAGATTGAACTTAGTCCACACCAAATAAAGCTTTTGGCATGAACCCTCAGAGCGCACTAATTAATTTAACTCTGTTTCAAAATTCTAGTACTGAACTAAATGAACTCTACTCATCTGAATGTCCATGAATCCTAACATCTATGCTAACAAGCTTGACACCTAGTTTCTGCAGGATACATATCAAAATGATTGTATGGGCAATTTTTATGCTACTAATTCTTAACATTATTTTCACGGTCCCTATGGAGAGGAACCAAGAAATAAAACAGATATAAACAAACTATAAAAATCACCTGCACAATAGTGTGAAGAAGCTAAGGTATTGTGAAACAACAGAATTTTCATTTTCTTTCCTAGCTGGTACAGCAGAATTGTATTTCAGTATCCACTGACTTCTCTGGGAAATCACTTAAAGGAAGTATCTAGACCTTATTAACGGAGACAGATCCAGGAGGGCTGCACCTATAAGGTTCTCAAGAACCAAGCAACATACCCACTGTAATCCCACAAGTGGGGTCTGGGGAGGGTAGGTTATACGCATACTTTACCCCTACCTCGTAAAGATAAAGAGGCAGGGGTAAGATTTGCATACACTCTACCCTCTCAAGACCCCACTTATAAAATTACATTGCTAAGAACCTTTAGGGTAGAACGCACAAGGGTTCTTAGCATTGAACTCATTATATTTTTGAAGTTACGGGTTCACATCTACAATTTGTTGCAAATAACTTTATGTTCTACATCAAAAGTACTGGATCCGAACCCAGTAACTTGAAGTTGCATTTGCCCCTGCTTATTCATTCCATCAGAAGAGGACACTACTCTAATGTCTTGATGCATAAAAAATGCAACAAAATATGGTGCTACAGCAGAAGAGCCCGAAGATAAATTAGATACCCGAGCACCAGTTGCCACTATGAGAATCTTGTAGGTTATGGTTTCACCGGTTGCGGTCAACAATGTCTTCCTTCTCACATCAGCTGATTTTACACGAGTTCCAAGGACCAGCTCAATGCCTAAAGGCAATAGAACAATCAATGACTAATCAATATCCTTGGAAAGATATTAAATACCTCATTCTTTTGCACTAAAAAGTAACCAAAAAAAAAAAGAAATAGCTCAACATAATAACATATTCTGATCACTGATGCCATATACCAGCAGCATTTTTTCGTTGCCGTTCCCAGCTAGTGCATTCCATGAAAAGAGATCAATTCCAAAACCTTATGATGACTATGGCTATTGAAGCTTCATTTTACGTGATTTAAAAACCAGTATTGCTGCAGCTAATTACAGCCCAAGAAAAGCATGGATCTCAGTCTCAAAATCTTTTCCCCTGATTCTAATCTTTCAAAATGTTGGCTAAACATGAAACGTAAGAAGATATTAAATATCAGGAAATAGTTCATGGTCTTCCTATATAACAAGGTTTCTAGTACATCAAGCAAAGATGACCTTCTGAATGAAAAGGTTAATCCTTTTTCTTCTTTTATGAAACAACTATCCTCTCAATAGGTAGTCATACAAAAGGTGAGACAAACATCAAACTTGACCCTGAAGACATCCATATGTGATGAATTAAACTAATTGGAACAGTCCAGTTAAGCTCTTAATTTGTAATCCTTCAGACATTTTTTAAATGAGGTGTATGGGCATGTCGTCAAGTATATGTGATTACTTCTGGATTTTTTAATTCCTTAAGCAAATGCCAACAACAAAATGATGCTGCAACATCAACTACAATAGAATAACACATAGTGTGAAACCTCTATGCAAGTAATTCAATAACATTTATACGTTCAAGGCAGTCAGTAACTGCAATGCTCACTTTGGACAATTCTAAATATATCTATGACAACCATAAATAAAAATTGATCAATTACAATGACGCCTGCTAAAATATTTAAAGCCAATGGAAGCAAAAGATATTTAAAATTTACCGTTTTCCTTGTACCACTTCGGTGTCAACCTTTCCTCATTTGAACCAACACAACAATGAAAAGCAGGCAGACGTGCAGGATCTGCATAGAATAAAATCTCAAAAGGTTAAAAAATAATGAACAAAGGAGAGAAAAGAAGAAACAATTCATCCAGATAACTCTTGTTAAGTGACTGTAACTAGAGCCAGGGATTATTCCACCATTAATGCTTGTAGGATATTTCCCCAAAGTTACAGTGCACAATAAAACTTATCTTTAAATCTAAAGAAAGCATTAACATCCACTTGGAAGATGTCTAAGACAAAAATCTGAACAGGGGTGAGGTGACTGGGAGATACCTTCTGGTAGTAAATAACCCTTGCTTAATGCAGGTCGTTCATAAGGAGCAACCTGAAAAGAACAGCAGAAGTTTAGAAGATGAGGTAGGAAACTTCAGGAAGCTCAAACAAGAGAGAGCCATCATGTGTTACCCATCCATTGAATGATTGTCTCCATAAGGAAGCATCTGATGAATTTTGGTCTTCCTTTGTTAATGACATTAGTTTTAACTCAAGGAAGGTAAAAGATCAAGATAGATAAAAGAGGCAGATTACTCGAAGCTATGATCTTTATTATTTCTAATGACATTAAATTGGATCAGAGATAAATAAATTGATAAGTTTATGCATCTTTTTGCCTCCTAGAAAATGAATGAGGAGAGGGAGGAACAGGAAAAAGAAATAACCATTCCAGCAGCACTTCACAAGTAGGCGGTATGCACTAAAAACTCAATATCAGATCTACAGATTATTAGCATTTCTATCATGTGACAGTGTTATTGGAATCAGAACAGATTTTTGGGATTCATCCTACCAATTCAAGTATCACTACGTTCCTCCTAAAACTATGTAGAAGCTACAGTTTCAATGTGATTATAAATTAAACTTTATTCTAGACTCGAAAAGTCATCACAAAACCCCAAATTCAGCTCAGATAAGAAAAAACCTACTCAAATTGGATTACACGCATAAGAATTCACAAAATTGAACATTTACAACGTTTTATAATAAATAAGCAGCAACACACAGATAAAGAAAGAACAAGAAGAAGATAAAAACATCAAAAGAATGCTGAAACTGAGCTCGAAGAAGGAAAAAAAAAGTAAGGAATCAAGTAATACAAGAGAAGTAATATTTACAGGTTCTTCAGAGATGATGCATAGTTCGCCATGAGAGACACCTCGTTTAACAAATTCATGAGCTGCATAACCAGCAGCAACTCCTCCTCCCAATATTACATACACAAAGGCCCTACCCATTTCCACTTTCCCCAAAATTCTAAGGACCAAAAATCCCAAATTTAATATCTTATTCTTACCCTTTTCAAATTAAATTTGATTACGGATCATACAATTAACGTGCGGCTGTAGCAATATCAACCACTTCTTTTACCATTTTGCCCTTAAATCCTTCCATTTCTAGTTTGAACTTTGAACCTTTATATTTAGAAAATATTTTCTTTTAGTCCTGCTTTTGCATGTTTATTATTTTTGCTTCTACATATTCAAAAACTTTTTTTTAAAAAAAAAAATTATAAATTTAACGTGAATTGTTAGTTTAATTTTTTAAATTATTGATACCTTTAAAAAGTGTTTATTTATATGATTAATTGAATCTAAATATATTTTTAATTCTGTAACATGAGTGAAATACATTTCTAAATTCTCGTCAAATTTAAGACTGTTTTCAATACTTCTTTCAGTTTTTTATTAAGAGACTGAAACAACTAATTATATCATGTAGCAGATCAGGCGATATCTAAATTTAGTTAGTCAAATAAAAAAATATATTTTAAAAAATGTGAATAGCATGAAAAACAAAATTACTAGTAATACATTATTTTTAATAATTTTCTCAAAACTTAACGGATTATTAATTATTGGATGTACTATTACTTAATATTTGAATTGTAAAGACAAAATAATATACAGCCATTATTTATGTAGATCAAAATATGCATTTTCATGATTTCAAGATTAAATTATGTTTCCCAAAGTTCACAAAGGACCAAAATGAAATTCAATTAATAAGAATTTGTTGAAGGATTAGAAGGGAAATTACTTCTTTATTGAAAAATAGTAGTAGGCAGAGGGACCCACTGAAAGGAGAGAAAGCAATATTATTGATACACGTGGAGTAGGATATGATCTTTTGCATAGGGATGTGTGATAGACGGTTGATGATCAAGTTGACTGACGTGGCTGTTTCTGGAAAGATCATATTACAGGTTTCTTTTTTCTTTTTCTTTTTTGCTTCTTTTCAGAGAAAAATAAAAAGGATAATATCAATTGTATCTTAAACATACAATTGATATCTCTAACACATATAATATTAAGGGAACTCCATATAAAAGAAATTAAATTTAGTAAGATTCTTTTTAACTAGGAGCCCTATTTATGCTTCATCGTTATAATTTTGTTTGTTTTGTTTATTTTATTTCGTATAATTCGCTTGTTAATATATATAATGTAATTCTATTTGTAAAATATGTAAACAAAAAAAGTATATATAAATTAAGTATTTATACATTTAGGATTTTTTTTTATAACTTATACGAAGCAAATAAATCAACAAATGTATCAGCAAGCTAGGGTAAACATATAAAAATTTATATAATTTAGCATACAAATTTTAAAATCTGCATAAGGTTATATGTTAATAGCGGTAAGTAATTTCTTCATTATAGCTATGTTAAATAATTAATTAGTACATACTTATTTAATTGCGTAATTTTCACTTTTAAGTCAAAAACTCCAATCTAGAAAACTCGTAATTAAAATTTCAGCTTTACCCTTATTTGTGTATAGTGTGAGGGGAGTTTAAGAGATTGTACTAAATATTTTTCATCATTTCTGCACGAGATTGATCATTGTTAAAGAATGACAAAAGTCTTATATTAATAATTAATGAAAAAATGGACTCCTTAGAAGACTTGTACAATCATCCTTACTCTAAATTAACTTTTGAAATATGAATTAGGCCTAAAATCTAATTTCACAACTAATAATTACTCATAAAACAATACTATATGTGTAGTAGGAATAGTGTGTCGTTATGCTTACTTATTCTTGAAAAACTTTCACATATATCCACTTTAAAATAATTAATTACTCTTCATAGTCATAGTTTGATAATTATAATTTTAGCTATATGTTATATGGAGGAGAGAAACGAGCGAGTCTGCGAGAGAGAAGAGAGAGGTGAGAGAGAGGGGAAAAGAGTGGGAGAAAGGTGAATTGTATATGTTTATTGGTTAGATAATTGTATATTATACATATGTATTTGTATATATGAAAAGAGAGATTGGGAGAGGAAGGAGAGAGACGAGCGAGAGAGGGTAGAGAGTGGGACAGAGGTAAATTGTGTGTGTGGGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATAATTGTATATTATACATATACATTTGTATATAGGGCAAACAAGATTGGGAGAGGGAGGAGAGAGGCGAACGAGAGAGGGCAAAGAGTGGGACAGAGATGAATTGTATATGTATATAGGTTGAATAATTGTATATTATACATATGTATTTTTATATTCTGGCGAATTATACTTATACAAATATGACTAATTATACAAAATTTGAAGTCAATCCACATAATTAATATATAATTAGTCGCAAATGATAATTATAACAAACTATAGCTATGATGAGTAATCAAATAGTATTTATTGCGTAATTTTCCCTTTATTCTAATAGGATCTCATTCAATGAGTGTTAGCTGCTGACCCGGGGGTATCATGAAACCAGCCTAATTATAAAGTAAAAAACTATTCTGTGAGTTTGAAAAATTTCCAAGTCAAGAACAACCACTACACATACATGCCATTTGATATTTAGTTATAAACTTAGAATTAGATATTAATTATATATATCTATTGATTATTTGTATTATTTGCGAGTTACTAAATTACTAAATAAATATTATATTAATTTATACATGAATAACTTAATATTTTTTTGCTATATAAAAATCAATATTCCTTACATTCGTTTTAACTTGTCATATTTGACTTTGACATATCTTTTAAGGTACAACAATTGACATACTATTTTACTAGTAACCATTAAAAGTAAAAAAAATTACTCAGAGGATAATTAACAAGAAAAAATAAACCGAAGTATACAATTAAGTTGCCTTCTTACTGGCCACACCTAATGACCCATAATAATTAATATAGATGACTAAAATTTCAGCAATTTGCTCAATTTTCCAGTCTTTCCATTTATTTTTCCATTACTTGTTTGGAAAAAGTCTTTAGTAGGTCTACTATCGACAGTGCTTGACTGGAAAATTAGTAACTTTAGGTTCCCAGAATTTGCTTCTAAATCTAGTGCTTCTTCTCTATATAAGAAGCAATTGTTTGATTATGTTATTCACATTAATTCTCCATTTGAAACTTTCTTGTTACATTTTCATAATGTCTCTTCTTTTTCTCTTCACCAAGAGTTTCTCTATTGTACCTATGGTTGCATTGTTTATACTATTAATGTGTGGCCTCCAAATAACAGGTCTCTCAAAATATTTCTTGTGTCTCAATTTATATGAAATTTTTAAAAAAAACATTTAGGTTCATTCTATTCTTTGTGAATGTTTTTGATATATATATAATTAGAGTTTAAGCAATATATACCATTTATATAAATATTTTATATATTATCATGTCAAATATTAACTTATTGTAGCGTGTAACGAATCTTAGCTTTTAGATTTTAATGATCTAAAAATATTATTAGGTCTTTTTAACTTATACATCAATAATGTTTTAGCACTACTCCCTCCGTCCTATTTTATATGACATCTTTTTATTATGCATTTGCATTAAGAAATGATATAATTTTACCTTTCTATCCTTATTTAATGTTTTCATAAGTCAACTTTATAATAAATGATGAATATATTTTCAAGATTAATTAACTACTATCAAGGATATAATAGGCAATATATGATTATAGAACGGCATGACATATAAAACGCGACGGAGGGAGCATTTCATTTTTAAATTTAAAATTAAATGAGATTTGTAATTTTAAAAATGATTGGCTCAACCTAGATAGCGAAGATAGAAATTCCTTACGTTTGCCGATGTACATATATATAAGTTAAAAGTCATTTTTATCTATTCATGTCACATCTAGTACAAATTAATAATAAGTTGAGATTTAATTTGGATCTCTTTTTTTTTTTTTTTGCTAAATTATTGTTTCAAATATTGCAGGAGTATACTCTGTTGGGGTATGTTATGGAAGAATGGCTGATAATTTGCCATCAGAATATGATGTTGTAAATCATTGTCATGCCAATGGTATCAATAAAATAAGAATTTATTATCCAGACACAAATGTTTATAATGCTCTAAGGGGAAGTAACATTGAAGTCCTTGTTGATGTCCCAAATGAACATGTCAAAACACTAGCACAAGATCCAAATCAAGCAAGAAATTGGGTAAACAATAACATAAAAGCCTATTTCCCTAGTGTTAAATTCAGGTATATCGCGGTTGGAAATGAAATCAGCCCAATAAAGAACGTACAACTTGCTACATTTGTTGGTCCTGCTATTGAAAATGTTCATAACGCGATAGTAGAAGCAGGATTGCAAGATCAAATCAAAGTCTCAACCGCGACATATTCAGCCTTGTTAACAAATACATGGCCTCCACAAAACAGCATGTTTAATCCTGATTGGAGAGGTTTCACTGATCCAATAGTGAAACTTCTTAGAGACAACAATTTGCCGTTGCTAGTAAATATTTACCCGTATTTCAGTTACATTTATAATACGAAAGATATACCGCTATCCTATGCCCTGTTTACAGATTCAGGAACAAACTCAGCTGGTTACCAAAATCTTTTTGACGCGTTAGTCGATAGTATGTACTACGCTCTGGAGAAATCTGGTGCACCTAATGTGGAAATTGTTGTTTCGGAAACAGGTTGGCCTTCTTATGGACACCCTGCTGCAACTACTGATAATGCGCGGACTTATTACACGAATGTGATTAATCATGTTGGAAATGGCACTCCAAAGAAGCCTGGAAGGGAAATTGAGACTTTTTTGTTTGCAATGTTTGATGAAAGAGGAAAAGGAGGGGATGAAACTGAGAGACATTTTGGACTGTTTTACCCTGACAGGAACTCAAAATATGATCAGTTGAACTTTTGATAATTAAGGCCTAAGGGGATTTATGTTGCTATAATATCAACATAAGAGTAACATAATAAGGAATAATGGTTTTTCAATTTGCTAGTAAAGATGTTTGTTGTAAGCTTTTAAGCTATAAAAACATTTTATCATCTTGTTGAATCTATGTTTGTGTTGTGTTTAAGTTTGTAATATCATAATAATATACTTATTGATGTTTCGTCTATCGAAGAAAAATTAGGGTCTGCCCTTTTTTTTATGATTTATTGTTAAGGAAAAGAAGTCACATACAAGTCTTAAAGAATATTGAAGTTTCTTTCTGAACTAGACATGATCGAATCAAAGCCCGTACCAACTTCCCAGTTTCGCTACCAGACTTCAACGGTGATGAATCTTTTTTAAAATTTAAGTTTCTCATTTCAAGTAACTATGTTCCGATTTAGTGAAGATGTTTGCAGGTTTATTATAAAATAATAAAGCTAAGAAAAATAATACTACCTCCGTTCCTTATTAAGTTAATTTTTGAGACATTTTTTATTTTTTAAATTAACTTAATTGTGAAGTTTTCAAACTATTTTAAAAGTGTTTTTCCAATATTACCCTTCATTAGTTAGTATTGGAATTAATGATTAATTATATTTACTTATTTTAATAATAAATTTGACAATAGTTAATAAAGATTATAATGAAAAAACTAAGTTTAATTTATATCTTAATCTACTTTTCTTACCTTAAAAATTAACTTAAGATGGAATGAAGAGAGTACCGTAGAGAAAGATAGAGAATAGAGATAAAAGATGATTTCATAGGGAAAATAATGAAAATTCTCGTTTTATAGGGACAAAATTAACATGGTTTCGAAGTAAGAACGTAACTTGTGGGATTTAATGATGTGAAAATTAGTAGAAATTATTTTGTCTTGAGAGCAAAAATTAAAGATTTTAGTATAAAATAAGACAAAAGTGGAAATGGCTTACGGATGGTTAGTAGGCGGCCCAAATTAGTAGGCCCATGGAGCTATCGGCCCACGTACAAATTAGATGAGCACAATCATATACAAAAGTACACTTTTTTAATATTTAATTTAATCTACTCTCTAATCTAATAATATTAGTAAAATGTTATGAAATTTCTAAAAATATTTAGCCTTTTATCTAAAACATGTTGAAAAATCAAAAAATAAATTCACATCGAAAATGATATATATAATGGTGTTAGTACTTTAAATTTAATCGTTATTTCTTATTTAATTTTGTACACTCATAATGAATAAATCTTTATACGAATGGTGAATTATAATATGTTATTTATATATTATAATTATAATTTATTTTTTAACTTTTTGAAACTTTTGGAATGGTGAAAATTACCATGGCCAACCCAACATGTGATATAATTCACGTGGGGAGTTTATCTTTTTAAGTTTTTTGAACTCCTTTTGCTTATTACTTTATTACTTCATAATTTATACCCTCGACAAACATGTGATGAAAAATAATGGGCGGACCAAAATTGTGGGGAATATATTTCGTATCACCTTCGTTCTATTAAAGCCCACAACAATATTCCACTTACGTGAATTTGTACCGTAACAAAATAAGTTCGGTTAATAATTTTTAGTTTTTATCTTTCAAATTCGTAATATAACTTTTCTAATAAATTTGACGTTATGTAACATATTTTGTATGTCTTGTGATATAACTTGGGCCACTAAACTTTTGTCCTGGGTAGTATTAGAGTTGATTTTTTTTTTCCCCAAAGTTTTCGTGTTTGGAATAATTTGGCTTATTTTACGACGTAATTTATAAATGCAACTGAATTTATGCTTGAGGGGTAACTTATATCGCGTGACTTATGCCTGGACATAATATACTTCAACTAAATTTATGTCTTGTAAAACAAAAAAATTATCTTTGCGATATTTTTTGTTTTTGCTGCGGACATTTTCAACTATTTATTTTTTACTTTAAGTGTCTGGGATAAAAAAAAATAATTATAGACCAACAAATTTTGAAGACAAAAATAAAAGATTAAATGAAATGGGCGCATTTTTGCGAAAGCATTCCTACCAAAATTCGTGATTTTTCCATGTCTTTTTTGTCATTCAATATTTTATTTATTGAGTTCTAATTAATCATTTATAGATACTTAAAAAGAAATTAATATGAATATGAAATTTAAGTAATTATGTTCTGCCTAACCACCATTGTGTGGTTTCACCGGGCATCTACTTCTTGCGTTTGTGTTATCTGTTTTTGCAAGTTTTTCTTTTTTAAGACAAAAAAAGTTCTTTTTTCACTTTTTACTATTCCATGAACGGTATTAGGGAGTGTAAATTGTATAATAAAATCGTGAAAACAAGTGTCGATTTGTATCTGTGGGTAAAGATTAATAAAATCTCGATTGAGTATAAGCAAAGAACGAGAGAGGTCTTACAAGTTGCGAGGACTCTTTCATATATATTACTCTTCTTAGCGGAAATACTGATTATTGTTAATTGTTAATAAACAACCAATTCTTGAACATCTAATGACGTTGAATATCCTTGCAAAATAAGTACTCCCAAGTATATTGTAAAATTAATAAAGTGCCTAACCGGATGAATATCCTCTCTATTACTTATTCTTTCTATTTTTTTCAAGTACATATTTGGATGACGCAATCATGTGTTATAATTCAAAATTAAAGGTGAAAATTTATTTGTTATTTTGCATAACTGGGCTATTTTAATCCTTATATTGTGCGTAAATAAGCTAAACTTATGAATAAACATCGAGTATAATTTTGATAAGTAGGGAAAATGTATCATTTATCATTTCTGTTTATTTTATTAAGAGAAAATATTACAAGATAAAACATCAAATATTGAGTAATTAATAGAATAAAAAATTTAATTAACTGAGTTATTAAAATCCCGACTAGTTAATACTTATGATGAGAAAAGGTTGATGTGAAGTGCTAGGGAGCATGTGGAGACTTCTCAAGAGTAATTAAAGAGTTAGGCTCACGTCGAATTTTATACATGCAACGCCATGCACAGAAATAGTTAACTTATTGAAAAGCAAAATTTTAATTTCCTCAAAATAGTTATATTGCCTTTCCACATGTCGATTTCTTATGGATTTAGTTCGGTATAATTTTTGTTGGGCAGCCGTATATATTAATGAGTCATATTGTATTTTATTTAAAAATAATATTATACTTTTATAATAAAAAATAATTTAATTTTAAATTTTCTCTCTTTAATTACTTATAGAAAATGATTTATAGTTGTACAAATAATCACTGAAATTTCAGTTTTTTTTTTTTTGAAAAATTAAACCGTATCACGTAAATTAACTAAAACAGAGAGATTAGAGTTCGATACTATTTAATCGGATTATTATATTTTCTCTGTTTCTAGAATCATCTGTCTTCATAAATCATGCATTGCATGCAAGCTAAAGCTTGATACCTTTCTAGAATATTCTATTAAGATAAAAAAAAATTATGTACATTCCATTAGTATATATAAGTATAGTTATAAAAGTTTAAACTTGTATTACACAGAGACTGATCACCAAGAAGCATATAGATATGGGAATATAATTGGGAATTCTTAACACTTAACATATAGTAGGTAGCTAGCTAGAAGCTTAATTAATTAATTAATTGATAATTATTAATTAGTTGTTTGCATCATTAAGCAATTGCATGGACCAAAGGTCCTCCATGCTCCAAATATTTTCATTTGGAAAATTGCCCTGATGATGAAAAGTGGTTCCCATATTATTATTATTATTGTTGTTGTTGTTGTTGTTATTATTTCCAGAGTAAGTTTCCATTGAATCTGCAAGACTAGTAGATGTTTGGCTTGTACTTGCTTGTTGAATATTGTTGTTCTCCGAAATATTTGATGATAATCTGTTTATGTTTTCTGCTTGCTTAATGTGCTTTTGAATTCTTGTCCTCCATAAGTTCTTTATCTCATTATCTGTTCTACCAGGTAAATGTTTTGCAATTTTCGACCACCTGTATATCATAATAATTAATTTTATTGGAATTTTATGTCTATATTATAACCTTTTAAAAGAATTCATAGTATCCACCTGAAAAAAATAGGCAAATTACATGTTATATATAACATTTTAGTTTAAAATATACTTCTTTCATTTCCAATTACGTTTCTTATTTTATTTTTTGAGTTTATCACAAGAAGAGTGGTTTTTTTATATATATATTTAATAAGTATTTCAATTTCAATATTTTTCCTGATAAATTTAAGATAATAAAATTTAAAATATACATTATTAATTATATTTAAGATCACAGATTATCTTCTTTTCATTCTTTAACCTTTGTGTATAGTGAAATTAAGACACTAAATATGAAATGAATGAAAACTACTTATTTCAGATTATATTGAAATTAAACTTTTAAGTCACGTTTAATTTTTGGTAAAGAATCGAGGTTGTATACATGTTCTGTGGCTGATATTTGAAGTCCCACTGCTTGTATACATGCATATTTCAGTTATATATACCGATATTTTACATTATCAGCTCAATTTAATTGATTGTAAAAGGTTATTCTTTCTATTTGTGAGTTATCATATCAAACTTAATTTATATATACATAACTTAAACTATCCTCAAGGGGAAGTGATTTTAACCAGTTTCAATGTTTTGCTATATATAGAGAGGGATAACCGAGAGTTGCTCAAATGATAATTACCTCATATTCTCGATCCTAAAATTATGAAAAAAATTGGATTATAAAGAGAGGTTTTTGAAAGAAAAAAAATCCCCTTTTAACAGTTAAATACATGCATACCAGCAAATGACTTTCTAATACTTACTTGGAAAATGACTTTCTCCGTATCAAACATAATTTTTACGAATTTTTTTCTATTTCAAATATTATTTTCGATATACACTAAAAACATCTAAGGTACAAGAAGGACCCCTTGTTTTTTGTGATGAACCAAAACAATAAGTTATCCGTCTACTTCAATCAAAGCTATTTGCAAGCCTTTGCTTCTTATCATTTTTCATTTGATAGAACCGAGACCGTAATTATTTTTTAAATTTTTTTATATATATTGATAATATGAAAAAATAAATAATTTTTGTTTTTTACACATGTGTAAAGTGCATATATATTAAGGAGATATTATAACATATTTGAAAAACTCAAAAAGCAAAAGTTCAAAAACTTAAATTCATATGTCATATTCAATGGTAATAATGGAAGGCCAAATTCCTGTCGAACAATTGTCCTTGCTTTACTAATTATGGTGGCTGAATGAGGACCTATATTTTTTTATTTTACCTATATCTATAGGAAGAGAGAATAATAAATTGACAAAATTTAATGTAGGGGTGACATGTTTTAATTTTGTAATTTGTGCATGTTAATTAATATGGATAGAATATACTTTACATGATTAAGCTTAAAGATTTTTCGACTGTCAAATCAAAGCCGTAAAACAAAAAAATAATAATTATGTTGGGACAAAAATACCCTATCCGTTTTAATTTTTCTTTCTTTGATTTTGTTTAAATATGTTACTTTAAGATTTTTTTTTTGAATTATGTATTATAAACTAAAGACATGTGTAATATATTAAAATATTGTGATCTTAAAAATATCATACGAAAATTTAGAATTAAAATTTTGTTAAAAAAATAACAATAACAGAGACTTTTTGAAACAAATTAAAAATAAAAGTAAGATAAAAAATGATAGGAGTAATAGAAGATTAGGTCTATTCATTATAAATTTGATATTATGATCGGATTAATTTTTTGAATGGAAAAAAACTAAGGATTTCAACAAATTTTAGGGAAGAAAAGAAGGGAAAATGAGTTAATCCTCAATAAAAAAAATTAATTATTAAGAAGAATACTTTTGACACCCAATAAGAAATCATAAATAAATAAAAAATCCAAACTTTAGGTTACATTAAACACGTTGTAAATTCCCCATCACTCTCTTTCATGATGTCAAATCTAGTTCTAAGAGATTTTGGGACAATTCCTCTTTATCCATCCAACACATACAAACACATGGGAGATTTTTTTTATTTTTCATTTTTAAAAAAATGAAGGAGAAATTTCTACAATTTTCCAAATTTTCTTTTATATAATTTCATCATTTTATTTAATTATCAAAACCCTAGCTAGAAAAAGAAATCAACTCACCGGTTTCCCCACTTGGCATGTAGTTCCATGATCAACAATTGTTCCTCCGGTGTAATATTTCCCCTCCGAACATCAGGTCGGAGATAATTAAGCCATCTAAGTCTACAACTTTTTCCAGTACGCTTCAAACCTATTACACACGAAAAAAATTAAATATATACAACATAATTAAGCCCCAATCTAAACATGACGATCAATTAGTACCAGCGGATCGAGCGAGGGAATTCCAAACACCTTCACCATGATTAGCAATGTAATTGATGAGAATCAAATCTTCTTCCATAGTCCAAGGACCTTTCCTAACTTCAACATCTTGAGAATCACATGTTCTTTTATCCATTTTTTTTATATAATAAAGAAGAGAAGAGGAATGGGATGTGAAGAAAAAAGTTTTTTTTTTTTTTGTAGTTGGAGATTTTGACGAGGAACTAACGTTAGTTGGGGCTGATATTTATAGGGGACAACTAAAATGAGATTTTAAAACAGTAATTAAGTCTTTTAACTTTTAACCTAACTTGCGCTAAATAATTTATATACTATAAAGTTCTTACTTATACTTAATCGTCGTTATCGTTAATTGACGAGCATAAATAACAGCCAACGATGTGTGCGTGCATGGTCACAACGAGCTAGTGCTTACTAATTAATTAGTTCGATTTGATCAATTATATACGCTGACAGTTAAATTTATTTAAAGTGTATAATATTAGTGTTGCTTTTAATAAGTAAACAAGGAAACTAGCTATTTATGCATAGAAACCCCAATAATTTCACATTAGATTTAAATTGAAGTGTAACTTTTTTTTACATTATCAATGAATTATTTTGTATATATTTTACGTATTTTCAATGTATAAAACTTTATATGTACCTTTTAGTTATTTAATCGCACAATATTTTTATATAGGGAAAATTGTATATAATACCAAACTAATAATCTAAAATAAATGGAGTAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGCCAAAATTTGCCAGGCGCCTCTCTCCCAAAAATCTCACTCGTCACTCTCCCATTCTCGCTCGTCACTCTCCCTCTGCTCGCCTCTCTCGCTTTATACACAGAAGTGTATAATTTATGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAACATATACTTCAATTCAATTGTAGACAAATGCAAATTTTACAAATATTGCAGAGAAAAAGGTCAACGAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGAAAAACATATATTTTCTTGCTATACACTTATAATTATGCAATATACATATATTTTA</genome_strand>
        <mrna_strand>CTATCTCGCTATATACACAAAAAAAAATAAATTCTGTTTTTATTTTGTATAAAGCGAGAGAAAATTG--TATATACACATGTAAAAATATATATCTTCGTGTTATACACTTAATTATACAAATTACAAACATTTTACTTCAAATATTGCAG..............................................................................................................AGAAAAAGGCCAACGAATTATACAATTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATATAATTGCAGTGAAATACAATTTTCTCTAACTTTATACAACAGAAGTGTATATATTGTGTTTTTGTTTTTGTATAAAGCGAGACAAAAACATATATATTCTTGCCATACACTTATAATTATGCAATATACATACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="-" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>aaaaaaaaaaaaacctctgtttctattttgtataaagcgagagaaaattgtatatacacatgtaaaaatatatatcttcgtgttatacacttaattatacaaattacaaacattttacttcaaatattgcagagaaaaaggccaacgaattatacaattgtgaattatataattgcagtgaaatacaattttctctaactttatacaacagaagtgtatatattgtgtttttgtttttgtataaagcgagacaaaaacatatatattcttgccatacacttataattatgcaatatacatacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80265" stop="60421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79960" g_stop="79842" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79841" i_stop="79732" i_length="110">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79731" g_stop="79703" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="161" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79702" i_stop="60868" i_length="18835">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60867" g_stop="60721" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="308" r_length="147" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79960" e_stop="79842"/>
          <exon e_start="79731" e_stop="79703"/>
          <exon e_start="60867" e_stop="60721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAAAATTGCTGAGACCAACGAATTATACAATTGCAGTGAAATACAATTTGTATAAAGCGAGAAAAATATATATAATTTTAATTCGATTCAACTATATGCAAAGCAAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACACTTGTATATGTATAGCGAATTATACGCTAATAATAATACTATTTTAGATTATATAAACCTTACTAATACTGATTTTAAAACTGCAATTACTATAAAAAAGAGCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTTTGAAATTCATGTGCTCTCATGAGTTAATTATAGGATAATAATAAATATATCATTTAATTTACTTGTAGTAGACATGTACGCACTTCAACTTTAGGTATGCATATATTGACACTCAAACTTATATAAATTTATATTGAGCCTAGTGACGTGGCAGTTATTTAAAGTGTAACTAACTTATGTAGAATTACTTCGATAGATAGTAACAGCAATGAGCGAGGAAAGAATGTTTGAGCCTTCGGTTAGAGTTAGCAGTGTATATATATATATATAGCCTTGTATCAATTTCTGTGTAATTTTGTATGATTCTGTGGAATAAGATTCTCCCTATTTTTCTTCCTTCTGTAAATTGCTTTCTTCACCATTTTAGTTCATGCTACCTTTAGCTCAGCCCTAAATCGATGGCATAGATTCATGGTGGCTGCATTTCACAACTTAAACAAATAGACACATGTGTTTTGTGTATATAATACACACAAAACATGAATTGTCACGTAGAACATCATATTAGACATATATGTATAGTTGTTCAACTGATACAACTCTAAATTGCAACCAAAGTTGAAAATCATACATATCTGTTAAAATCAAGTTAATTGACACATTTATGTATTATGTCTAAATTAAAATGGTGACACGTCTGTTTCTCTTCTAACTTGAATGTACCATTTTGGAGTCGTTTAATTGATAGGTTGAGACTAATAATCTGAGATATTAAGCTCCAATTTTTCAAGAGTATCCACCAATAGCATTGATTTTCTTCCTTGTCATTTTAAGGTTCCTCCAATTAATATCTACTGTCAAAACATAAGCAATTTGAACATAAAGAGAGCATGCTGAGGGATTGAGGATAATGTGTATTGATATATACTGTAAAGACAGAATACATGTTTGTAAAATTGAAGCCATTTACAGGCCAAGTATTTCAAATTCTCTAAGCTAAAATCATACAACACAGCAGGAATCGACGTGTAAAAATCTTCCGTGGGGAACAAGACATTTACCACCTTCTACGCCTCCTACCATACCAGTATGCAAAGGCAGCAATTGAAGCAGCCAAAATGACTCCAGCTGTTGCATGCCAAACATGTAAAGGTTTCTCTGTTACAAAAGTGGAACCCGAACTACTGCTGACAACAACAGCCTCCGATGGCTCTGGTTTATCACTCAATGTCAATGCAAATCCTAAACCCTGCGTTTCGAGATCAGACAAGTCCTCAATTGCTGGTTTGAGCCTTGTGATCTTTGCAATAGCCTCATACTCCTCTTTGGTTCCACCCTCTAGAAAAGACCCAACGACGTGACCTTTGTTCACCCAATATGCACCAAAGCTATTCCCCAAGAAATCCCCAAAATGGACTACATCACCAGTACTGTCACCATAGAACTGCCAAGAGAGTGTGAAGACTCTGGAGTAGAAGAATGGCAAGTAGTCAAACTCTGTTGTTTTCTCTGGTTCCATGATTGCAGCAACTGCATGCCTTGCTGACTTCCTTGCAGAATCAACGTGTTCAAGTCTCCGCGTCTCACCGAAAATTTTGACAGGAAAAGTTGCAACATCCCCAACAGCATAGACTGAGCTGTTGCTTGACTGCATTTGGCCATTGACTTTTATCCCTCCTTTCTCAAGAGTAAGTTGCCCTTCAAAGAGGCTGGTATTTGGTCGAATTCCAATGCCTACGATGACCATGTCAGCAGGTAGCTTGGTTCCATCTCTCAAATTCACCGCAGTCATCTACATAAAAGGTCCCCGCATTCAAGCATCATGTCCATTATAACTTCAGTGATATATAAAATTGTGAAATGATGATTAATGTTAGTTCCAGCTTAACAAAGTGACTTGTTAAACGGAGTTCAAGAATATTCACTCTTTCAGTAAAAGTTAACCTTTTCTTATTCAAATAAAAAAGGATAACAAATAGAAGCTGTTTTCAGAAACTAATAAACTGAGTTTGCATTAACAAAGTACCTAGTGAAATTGAGGTTGGAAATGTTCAAGAAGAGGTAAATGAAAAAGCAGTTCAAACAAACACGTCTGCGAACAGCTTTCAAAGAAAACACCACCAAAGTGAAGCAAGCAACAGGCTTTACCTTATCATTGGAGTCGAAATCAAATGATGTCAAGACCGTGCCTTTCACAAACTTAACTCCTTTTGACCGGTAAAATTCTTCGTAGAAACTTGCAATTTTAGGAGTAAATAGGCGGGCCACTAACAACAAAAGAAAAGGGAAGAAAATTAAATGCTTTATAAAATCATTAGAAAAAACAACAGTTTGTTTACTGATGAACTTAAGATAGAACAGCAATGGTTGCACATTTATGGTTTATATCTGTAAGTAACTCTTGGACTTTGGGTTTTGAGAATTAAGAAACAAATCAGTTTTTCTCATACATAAGCTTTCAATCGATGATTTCATATTTTGAGGAAATATGAGGGCAGAAGTCCCACATTCTGATCAATTTTCATATCTTTATAGCATTTGTTGATTACTGAGATCACTGTTTTCTGTACTAATAGCATGGTTTGGAGAGTAAGGCATGTACTAGATTTCAGATTGTGGTTTGTATTTTCTGGATAAAACGCAACTACTAAAGTTATACTAATACATAATTCTCTAGAGAGGAGAAAACACAGTTCTTACTTCTGATATATTACAAGCAATCTAAAGAAACTCGAGTAAGAAACAGAAAAGAAAGTTCTCCAACTTCACAAAAGAATATAATTTACAAGCAACCTAAAGAAACTCGAGTTAAAAAAAGAAACGAAAGCTTTCCATCTTCACAAAAGAATACTTACTACAGTGTGCTTCTGGAAAGACCATGGTGACATTTATTTTGCCGATCACCAAAGAAGCAGCACATTCCATTCCTATGTAGCCACCACCAATTACAACAGCATTGCCACCACCGCTAGATTGCATCACATTAACCAGCCTGTTTGCATCAGCCAAATCCCGTAAATAACATACACTCTCAGCATCTGAGCCACTCACTCCAAACTCTTCAAGCTTCAAAGCCTAACAAAACATGCCAACCAAAAGTCAGAGACTTCATAAAATTCAATTTCATTGTTCACTAGGGAGCTTGGTCTTTGAGATTGAACTTAGTCCACACCAAATAAAGCTTTTGGCATGAACCCTCAGAGCGCACTAATTAATTTAACTCTGTTTCAAAATTCTAGTACTGAACTAAATGAACTCTACTCATCTGAATGTCCATGAATCCTAACATCTATGCTAACAAGCTTGACACCTAGTTTCTGCAGGATACATATCAAAATGATTGTATGGGCAATTTTTATGCTACTAATTCTTAACATTATTTTCACGGTCCCTATGGAGAGGAACCAAGAAATAAAACAGATATAAACAAACTATAAAAATCACCTGCACAATAGTGTGAAGAAGCTAAGGTATTGTGAAACAACAGAATTTTCATTTTCTTTCCTAGCTGGTACAGCAGAATTGTATTTCAGTATCCACTGACTTCTCTGGGAAATCACTTAAAGGAAGTATCTAGACCTTATTAACGGAGACAGATCCAGGAGGGCTGCACCTATAAGGTTCTCAAGAACCAAGCAACATACCCACTGTAATCCCACAAGTGGGGTCTGGGGAGGGTAGGTTATACGCATACTTTACCCCTACCTCGTAAAGATAAAGAGGCAGGGGTAAGATTTGCATACACTCTACCCTCTCAAGACCCCACTTATAAAATTACATTGCTAAGAACCTTTAGGGTAGAACGCACAAGGGTTCTTAGCATTGAACTCATTATATTTTTGAAGTTACGGGTTCACATCTACAATTTGTTGCAAATAACTTTATGTTCTACATCAAAAGTACTGGATCCGAACCCAGTAACTTGAAGTTGCATTTGCCCCTGCTTATTCATTCCATCAGAAGAGGACACTACTCTAATGTCTTGATGCATAAAAAATGCAACAAAATATGGTGCTACAGCAGAAGAGCCCGAAGATAAATTAGATACCCGAGCACCAGTTGCCACTATGAGAATCTTGTAGGTTATGGTTTCACCGGTTGCGGTCAACAATGTCTTCCTTCTCACATCAGCTGATTTTACACGAGTTCCAAGGACCAGCTCAATGCCTAAAGGCAATAGAACAATCAATGACTAATCAATATCCTTGGAAAGATATTAAATACCTCATTCTTTTGCACTAAAAAGTAACCAAAAAAAAAAAGAAATAGCTCAACATAATAACATATTCTGATCACTGATGCCATATACCAGCAGCATTTTTTCGTTGCCGTTCCCAGCTAGTGCATTCCATGAAAAGAGATCAATTCCAAAACCTTATGATGACTATGGCTATTGAAGCTTCATTTTACGTGATTTAAAAACCAGTATTGCTGCAGCTAATTACAGCCCAAGAAAAGCATGGATCTCAGTCTCAAAATCTTTTCCCCTGATTCTAATCTTTCAAAATGTTGGCTAAACATGAAACGTAAGAAGATATTAAATATCAGGAAATAGTTCATGGTCTTCCTATATAACAAGGTTTCTAGTACATCAAGCAAAGATGACCTTCTGAATGAAAAGGTTAATCCTTTTTCTTCTTTTATGAAACAACTATCCTCTCAATAGGTAGTCATACAAAAGGTGAGACAAACATCAAACTTGACCCTGAAGACATCCATATGTGATGAATTAAACTAATTGGAACAGTCCAGTTAAGCTCTTAATTTGTAATCCTTCAGACATTTTTTAAATGAGGTGTATGGGCATGTCGTCAAGTATATGTGATTACTTCTGGATTTTTTAATTCCTTAAGCAAATGCCAACAACAAAATGATGCTGCAACATCAACTACAATAGAATAACACATAGTGTGAAACCTCTATGCAAGTAATTCAATAACATTTATACGTTCAAGGCAGTCAGTAACTGCAATGCTCACTTTGGACAATTCTAAATATATCTATGACAACCATAAATAAAAATTGATCAATTACAATGACGCCTGCTAAAATATTTAAAGCCAATGGAAGCAAAAGATATTTAAAATTTACCGTTTTCCTTGTACCACTTCGGTGTCAACCTTTCCTCATTTGAACCAACACAACAATGAAAAGCAGGCAGACGTGCAGGATCTGCATAGAATAAAATCTCAAAAGGTTAAAAAATAATGAACAAAGGAGAGAAAAGAAGAAACAATTCATCCAGATAACTCTTGTTAAGTGACTGTAACTAGAGCCAGGGATTATTCCACCATTAATGCTTGTAGGATATTTCCCCAAAGTTACAGTGCACAATAAAACTTATCTTTAAATCTAAAGAAAGCATTAACATCCACTTGGAAGATGTCTAAGACAAAAATCTGAACAGGGGTGAGGTGACTGGGAGATACCTTCTGGTAGTAAATAACCCTTGCTTAATGCAGGTCGTTCATAAGGAGCAACCTGAAAAGAACAGCAGAAGTTTAGAAGATGAGGTAGGAAACTTCAGGAAGCTCAAACAAGAGAGAGCCATCATGTGTTACCCATCCATTGAATGATTGTCTCCATAAGGAAGCATCTGATGAATTTTGGTCTTCCTTTGTTAATGACATTAGTTTTAACTCAAGGAAGGTAAAAGATCAAGATAGATAAAAGAGGCAGATTACTCGAAGCTATGATCTTTATTATTTCTAATGACATTAAATTGGATCAGAGATAAATAAATTGATAAGTTTATGCATCTTTTTGCCTCCTAGAAAATGAATGAGGAGAGGGAGGAACAGGAAAAAGAAATAACCATTCCAGCAGCACTTCACAAGTAGGCGGTATGCACTAAAAACTCAATATCAGATCTACAGATTATTAGCATTTCTATCATGTGACAGTGTTATTGGAATCAGAACAGATTTTTGGGATTCATCCTACCAATTCAAGTATCACTACGTTCCTCCTAAAACTATGTAGAAGCTACAGTTTCAATGTGATTATAAATTAAACTTTATTCTAGACTCGAAAAGTCATCACAAAACCCCAAATTCAGCTCAGATAAGAAAAAACCTACTCAAATTGGATTACACGCATAAGAATTCACAAAATTGAACATTTACAACGTTTTATAATAAATAAGCAGCAACACACAGATAAAGAAAGAACAAGAAGAAGATAAAAACATCAAAAGAATGCTGAAACTGAGCTCGAAGAAGGAAAAAAAAAGTAAGGAATCAAGTAATACAAGAGAAGTAATATTTACAGGTTCTTCAGAGATGATGCATAGTTCGCCATGAGAGACACCTCGTTTAACAAATTCATGAGCTGCATAACCAGCAGCAACTCCTCCTCCCAATATTACATACACAAAGGCCCTACCCATTTCCACTTTCCCCAAAATTCTAAGGACCAAAAATCCCAAATTTAATATCTTATTCTTACCCTTTTCAAATTAAATTTGATTACGGATCATACAATTAACGTGCGGCTGTAGCAATATCAACCACTTCTTTTACCATTTTGCCCTTAAATCCTTCCATTTCTAGTTTGAACTTTGAACCTTTATATTTAGAAAATATTTTCTTTTAGTCCTGCTTTTGCATGTTTATTATTTTTGCTTCTACATATTCAAAAACTTTTTTTTAAAAAAAAAAATTATAAATTTAACGTGAATTGTTAGTTTAATTTTTTAAATTATTGATACCTTTAAAAAGTGTTTATTTATATGATTAATTGAATCTAAATATATTTTTAATTCTGTAACATGAGTGAAATACATTTCTAAATTCTCGTCAAATTTAAGACTGTTTTCAATACTTCTTTCAGTTTTTTATTAAGAGACTGAAACAACTAATTATATCATGTAGCAGATCAGGCGATATCTAAATTTAGTTAGTCAAATAAAAAAATATATTTTAAAAAATGTGAATAGCATGAAAAACAAAATTACTAGTAATACATTATTTTTAATAATTTTCTCAAAACTTAACGGATTATTAATTATTGGATGTACTATTACTTAATATTTGAATTGTAAAGACAAAATAATATACAGCCATTATTTATGTAGATCAAAATATGCATTTTCATGATTTCAAGATTAAATTATGTTTCCCAAAGTTCACAAAGGACCAAAATGAAATTCAATTAATAAGAATTTGTTGAAGGATTAGAAGGGAAATTACTTCTTTATTGAAAAATAGTAGTAGGCAGAGGGACCCACTGAAAGGAGAGAAAGCAATATTATTGATACACGTGGAGTAGGATATGATCTTTTGCATAGGGATGTGTGATAGACGGTTGATGATCAAGTTGACTGACGTGGCTGTTTCTGGAAAGATCATATTACAGGTTTCTTTTTTCTTTTTCTTTTTTGCTTCTTTTCAGAGAAAAATAAAAAGGATAATATCAATTGTATCTTAAACATACAATTGATATCTCTAACACATATAATATTAAGGGAACTCCATATAAAAGAAATTAAATTTAGTAAGATTCTTTTTAACTAGGAGCCCTATTTATGCTTCATCGTTATAATTTTGTTTGTTTTGTTTATTTTATTTCGTATAATTCGCTTGTTAATATATATAATGTAATTCTATTTGTAAAATATGTAAACAAAAAAAGTATATATAAATTAAGTATTTATACATTTAGGATTTTTTTTTATAACTTATACGAAGCAAATAAATCAACAAATGTATCAGCAAGCTAGGGTAAACATATAAAAATTTATATAATTTAGCATACAAATTTTAAAATCTGCATAAGGTTATATGTTAATAGCGGTAAGTAATTTCTTCATTATAGCTATGTTAAATAATTAATTAGTACATACTTATTTAATTGCGTAATTTTCACTTTTAAGTCAAAAACTCCAATCTAGAAAACTCGTAATTAAAATTTCAGCTTTACCCTTATTTGTGTATAGTGTGAGGGGAGTTTAAGAGATTGTACTAAATATTTTTCATCATTTCTGCACGAGATTGATCATTGTTAAAGAATGACAAAAGTCTTATATTAATAATTAATGAAAAAATGGACTCCTTAGAAGACTTGTACAATCATCCTTACTCTAAATTAACTTTTGAAATATGAATTAGGCCTAAAATCTAATTTCACAACTAATAATTACTCATAAAACAATACTATATGTGTAGTAGGAATAGTGTGTCGTTATGCTTACTTATTCTTGAAAAACTTTCACATATATCCACTTTAAAATAATTAATTACTCTTCATAGTCATAGTTTGATAATTATAATTTTAGCTATATGTTATATGGAGGAGAGAAACGAGCGAGTCTGCGAGAGAGAAGAGAGAGGTGAGAGAGAGGGGAAAAGAGTGGGAGAAAGGTGAATTGTATATGTTTATTGGTTAGATAATTGTATATTATACATATGTATTTGTATATATGAAAAGAGAGATTGGGAGAGGAAGGAGAGAGACGAGCGAGAGAGGGTAGAGAGTGGGACAGAGGTAAATTGTGTGTGTGGGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATAATTGTATATTATACATATACATTTGTATATAGGGCAAACAAGATTGGGAGAGGGAGGAGAGAGGCGAACGAGAGAGGGCAAAGAGTGGGACAGAGATGAATTGTATATGTATATAGGTTGAATAATTGTATATTATACATATGTATTTTTATATTCTGGCGAATTATACTTATACAAATATGACTAATTATACAAAATTTGAAGTCAATCCACATAATTAATATATAATTAGTCGCAAATGATAATTATAACAAACTATAGCTATGATGAGTAATCAAATAGTATTTATTGCGTAATTTTCCCTTTATTCTAATAGGATCTCATTCAATGAGTGTTAGCTGCTGACCCGGGGGTATCATGAAACCAGCCTAATTATAAAGTAAAAAACTATTCTGTGAGTTTGAAAAATTTCCAAGTCAAGAACAACCACTACACATACATGCCATTTGATATTTAGTTATAAACTTAGAATTAGATATTAATTATATATATCTATTGATTATTTGTATTATTTGCGAGTTACTAAATTACTAAATAAATATTATATTAATTTATACATGAATAACTTAATATTTTTTTGCTATATAAAAATCAATATTCCTTACATTCGTTTTAACTTGTCATATTTGACTTTGACATATCTTTTAAGGTACAACAATTGACATACTATTTTACTAGTAACCATTAAAAGTAAAAAAAATTACTCAGAGGATAATTAACAAGAAAAAATAAACCGAAGTATACAATTAAGTTGCCTTCTTACTGGCCACACCTAATGACCCATAATAATTAATATAGATGACTAAAATTTCAGCAATTTGCTCAATTTTCCAGTCTTTCCATTTATTTTTCCATTACTTGTTTGGAAAAAGTCTTTAGTAGGTCTACTATCGACAGTGCTTGACTGGAAAATTAGTAACTTTAGGTTCCCAGAATTTGCTTCTAAATCTAGTGCTTCTTCTCTATATAAGAAGCAATTGTTTGATTATGTTATTCACATTAATTCTCCATTTGAAACTTTCTTGTTACATTTTCATAATGTCTCTTCTTTTTCTCTTCACCAAGAGTTTCTCTATTGTACCTATGGTTGCATTGTTTATACTATTAATGTGTGGCCTCCAAATAACAGGTCTCTCAAAATATTTCTTGTGTCTCAATTTATATGAAATTTTTAAAAAAAACATTTAGGTTCATTCTATTCTTTGTGAATGTTTTTGATATATATATAATTAGAGTTTAAGCAATATATACCATTTATATAAATATTTTATATATTATCATGTCAAATATTAACTTATTGTAGCGTGTAACGAATCTTAGCTTTTAGATTTTAATGATCTAAAAATATTATTAGGTCTTTTTAACTTATACATCAATAATGTTTTAGCACTACTCCCTCCGTCCTATTTTATATGACATCTTTTTATTATGCATTTGCATTAAGAAATGATATAATTTTACCTTTCTATCCTTATTTAATGTTTTCATAAGTCAACTTTATAATAAATGATGAATATATTTTCAAGATTAATTAACTACTATCAAGGATATAATAGGCAATATATGATTATAGAACGGCATGACATATAAAACGCGACGGAGGGAGCATTTCATTTTTAAATTTAAAATTAAATGAGATTTGTAATTTTAAAAATGATTGGCTCAACCTAGATAGCGAAGATAGAAATTCCTTACGTTTGCCGATGTACATATATATAAGTTAAAAGTCATTTTTATCTATTCATGTCACATCTAGTACAAATTAATAATAAGTTGAGATTTAATTTGGATCTCTTTTTTTTTTTTTTTGCTAAATTATTGTTTCAAATATTGCAGGAGTATACTCTGTTGGGGTATGTTATGGAAGAATGGCTGATAATTTGCCATCAGAATATGATGTTGTAAATCATTGTCATGCCAATGGTATCAATAAAATAAGAATTTATTATCCAGACACAAATGTTTATAATGCTCTAAGGGGAAGTAACATTGAAGTCCTTGTTGATGTCCCAAATGAACATGTCAAAACACTAGCACAAGATCCAAATCAAGCAAGAAATTGGGTAAACAATAACATAAAAGCCTATTTCCCTAGTGTTAAATTCAGGTATATCGCGGTTGGAAATGAAATCAGCCCAATAAAGAACGTACAACTTGCTACATTTGTTGGTCCTGCTATTGAAAATGTTCATAACGCGATAGTAGAAGCAGGATTGCAAGATCAAATCAAAGTCTCAACCGCGACATATTCAGCCTTGTTAACAAATACATGGCCTCCACAAAACAGCATGTTTAATCCTGATTGGAGAGGTTTCACTGATCCAATAGTGAAACTTCTTAGAGACAACAATTTGCCGTTGCTAGTAAATATTTACCCGTATTTCAGTTACATTTATAATACGAAAGATATACCGCTATCCTATGCCCTGTTTACAGATTCAGGAACAAACTCAGCTGGTTACCAAAATCTTTTTGACGCGTTAGTCGATAGTATGTACTACGCTCTGGAGAAATCTGGTGCACCTAATGTGGAAATTGTTGTTTCGGAAACAGGTTGGCCTTCTTATGGACACCCTGCTGCAACTACTGATAATGCGCGGACTTATTACACGAATGTGATTAATCATGTTGGAAATGGCACTCCAAAGAAGCCTGGAAGGGAAATTGAGACTTTTTTGTTTGCAATGTTTGATGAAAGAGGAAAAGGAGGGGATGAAACTGAGAGACATTTTGGACTGTTTTACCCTGACAGGAACTCAAAATATGATCAGTTGAACTTTTGATAATTAAGGCCTAAGGGGATTTATGTTGCTATAATATCAACATAAGAGTAACATAATAAGGAATAATGGTTTTTCAATTTGCTAGTAAAGATGTTTGTTGTAAGCTTTTAAGCTATAAAAACATTTTATCATCTTGTTGAATCTATGTTTGTGTTGTGTTTAAGTTTGTAATATCATAATAATATACTTATTGATGTTTCGTCTATCGAAGAAAAATTAGGGTCTGCCCTTTTTTTTATGATTTATTGTTAAGGAAAAGAAGTCACATACAAGTCTTAAAGAATATTGAAGTTTCTTTCTGAACTAGACATGATCGAATCAAAGCCCGTACCAACTTCCCAGTTTCGCTACCAGACTTCAACGGTGATGAATCTTTTTTAAAATTTAAGTTTCTCATTTCAAGTAACTATGTTCCGATTTAGTGAAGATGTTTGCAGGTTTATTATAAAATAATAAAGCTAAGAAAAATAATACTACCTCCGTTCCTTATTAAGTTAATTTTTGAGACATTTTTTATTTTTTAAATTAACTTAATTGTGAAGTTTTCAAACTATTTTAAAAGTGTTTTTCCAATATTACCCTTCATTAGTTAGTATTGGAATTAATGATTAATTATATTTACTTATTTTAATAATAAATTTGACAATAGTTAATAAAGATTATAATGAAAAAACTAAGTTTAATTTATATCTTAATCTACTTTTCTTACCTTAAAAATTAACTTAAGATGGAATGAAGAGAGTACCGTAGAGAAAGATAGAGAATAGAGATAAAAGATGATTTCATAGGGAAAATAATGAAAATTCTCGTTTTATAGGGACAAAATTAACATGGTTTCGAAGTAAGAACGTAACTTGTGGGATTTAATGATGTGAAAATTAGTAGAAATTATTTTGTCTTGAGAGCAAAAATTAAAGATTTTAGTATAAAATAAGACAAAAGTGGAAATGGCTTACGGATGGTTAGTAGGCGGCCCAAATTAGTAGGCCCATGGAGCTATCGGCCCACGTACAAATTAGATGAGCACAATCATATACAAAAGTACACTTTTTTAATATTTAATTTAATCTACTCTCTAATCTAATAATATTAGTAAAATGTTATGAAATTTCTAAAAATATTTAGCCTTTTATCTAAAACATGTTGAAAAATCAAAAAATAAATTCACATCGAAAATGATATATATAATGGTGTTAGTACTTTAAATTTAATCGTTATTTCTTATTTAATTTTGTACACTCATAATGAATAAATCTTTATACGAATGGTGAATTATAATATGTTATTTATATATTATAATTATAATTTATTTTTTAACTTTTTGAAACTTTTGGAATGGTGAAAATTACCATGGCCAACCCAACATGTGATATAATTCACGTGGGGAGTTTATCTTTTTAAGTTTTTTGAACTCCTTTTGCTTATTACTTTATTACTTCATAATTTATACCCTCGACAAACATGTGATGAAAAATAATGGGCGGACCAAAATTGTGGGGAATATATTTCGTATCACCTTCGTTCTATTAAAGCCCACAACAATATTCCACTTACGTGAATTTGTACCGTAACAAAATAAGTTCGGTTAATAATTTTTAGTTTTTATCTTTCAAATTCGTAATATAACTTTTCTAATAAATTTGACGTTATGTAACATATTTTGTATGTCTTGTGATATAACTTGGGCCACTAAACTTTTGTCCTGGGTAGTATTAGAGTTGATTTTTTTTTTCCCCAAAGTTTTCGTGTTTGGAATAATTTGGCTTATTTTACGACGTAATTTATAAATGCAACTGAATTTATGCTTGAGGGGTAACTTATATCGCGTGACTTATGCCTGGACATAATATACTTCAACTAAATTTATGTCTTGTAAAACAAAAAAATTATCTTTGCGATATTTTTTGTTTTTGCTGCGGACATTTTCAACTATTTATTTTTTACTTTAAGTGTCTGGGATAAAAAAAAATAATTATAGACCAACAAATTTTGAAGACAAAAATAAAAGATTAAATGAAATGGGCGCATTTTTGCGAAAGCATTCCTACCAAAATTCGTGATTTTTCCATGTCTTTTTTGTCATTCAATATTTTATTTATTGAGTTCTAATTAATCATTTATAGATACTTAAAAAGAAATTAATATGAATATGAAATTTAAGTAATTATGTTCTGCCTAACCACCATTGTGTGGTTTCACCGGGCATCTACTTCTTGCGTTTGTGTTATCTGTTTTTGCAAGTTTTTCTTTTTTAAGACAAAAAAAGTTCTTTTTTCACTTTTTACTATTCCATGAACGGTATTAGGGAGTGTAAATTGTATAATAAAATCGTGAAAACAAGTGTCGATTTGTATCTGTGGGTAAAGATTAATAAAATCTCGATTGAGTATAAGCAAAGAACGAGAGAGGTCTTACAAGTTGCGAGGACTCTTTCATATATATTACTCTTCTTAGCGGAAATACTGATTATTGTTAATTGTTAATAAACAACCAATTCTTGAACATCTAATGACGTTGAATATCCTTGCAAAATAAGTACTCCCAAGTATATTGTAAAATTAATAAAGTGCCTAACCGGATGAATATCCTCTCTATTACTTATTCTTTCTATTTTTTTCAAGTACATATTTGGATGACGCAATCATGTGTTATAATTCAAAATTAAAGGTGAAAATTTATTTGTTATTTTGCATAACTGGGCTATTTTAATCCTTATATTGTGCGTAAATAAGCTAAACTTATGAATAAACATCGAGTATAATTTTGATAAGTAGGGAAAATGTATCATTTATCATTTCTGTTTATTTTATTAAGAGAAAATATTACAAGATAAAACATCAAATATTGAGTAATTAATAGAATAAAAAATTTAATTAACTGAGTTATTAAAATCCCGACTAGTTAATACTTATGATGAGAAAAGGTTGATGTGAAGTGCTAGGGAGCATGTGGAGACTTCTCAAGAGTAATTAAAGAGTTAGGCTCACGTCGAATTTTATACATGCAACGCCATGCACAGAAATAGTTAACTTATTGAAAAGCAAAATTTTAATTTCCTCAAAATAGTTATATTGCCTTTCCACATGTCGATTTCTTATGGATTTAGTTCGGTATAATTTTTGTTGGGCAGCCGTATATATTAATGAGTCATATTGTATTTTATTTAAAAATAATATTATACTTTTATAATAAAAAATAATTTAATTTTAAATTTTCTCTCTTTAATTACTTATAGAAAATGATTTATAGTTGTACAAATAATCACTGAAATTTCAGTTTTTTTTTTTTTGAAAAATTAAACCGTATCACGTAAATTAACTAAAACAGAGAGATTAGAGTTCGATACTATTTAATCGGATTATTATATTTTCTCTGTTTCTAGAATCATCTGTCTTCATAAATCATGCATTGCATGCAAGCTAAAGCTTGATACCTTTCTAGAATATTCTATTAAGATAAAAAAAAATTATGTACATTCCATTAGTATATATAAGTATAGTTATAAAAGTTTAAACTTGTATTACACAGAGACTGATCACCAAGAAGCATATAGATATGGGAATATAATTGGGAATTCTTAACACTTAACATATAGTAGGTAGCTAGCTAGAAGCTTAATTAATTAATTAATTGATAATTATTAATTAGTTGTTTGCATCATTAAGCAATTGCATGGACCAAAGGTCCTCCATGCTCCAAATATTTTCATTTGGAAAATTGCCCTGATGATGAAAAGTGGTTCCCATATTATTATTATTATTGTTGTTGTTGTTGTTGTTATTATTTCCAGAGTAAGTTTCCATTGAATCTGCAAGACTAGTAGATGTTTGGCTTGTACTTGCTTGTTGAATATTGTTGTTCTCCGAAATATTTGATGATAATCTGTTTATGTTTTCTGCTTGCTTAATGTGCTTTTGAATTCTTGTCCTCCATAAGTTCTTTATCTCATTATCTGTTCTACCAGGTAAATGTTTTGCAATTTTCGACCACCTGTATATCATAATAATTAATTTTATTGGAATTTTATGTCTATATTATAACCTTTTAAAAGAATTCATAGTATCCACCTGAAAAAAATAGGCAAATTACATGTTATATATAACATTTTAGTTTAAAATATACTTCTTTCATTTCCAATTACGTTTCTTATTTTATTTTTTGAGTTTATCACAAGAAGAGTGGTTTTTTTATATATATATTTAATAAGTATTTCAATTTCAATATTTTTCCTGATAAATTTAAGATAATAAAATTTAAAATATACATTATTAATTATATTTAAGATCACAGATTATCTTCTTTTCATTCTTTAACCTTTGTGTATAGTGAAATTAAGACACTAAATATGAAATGAATGAAAACTACTTATTTCAGATTATATTGAAATTAAACTTTTAAGTCACGTTTAATTTTTGGTAAAGAATCGAGGTTGTATACATGTTCTGTGGCTGATATTTGAAGTCCCACTGCTTGTATACATGCATATTTCAGTTATATATACCGATATTTTACATTATCAGCTCAATTTAATTGATTGTAAAAGGTTATTCTTTCTATTTGTGAGTTATCATATCAAACTTAATTTATATATACATAACTTAAACTATCCTCAAGGGGAAGTGATTTTAACCAGTTTCAATGTTTTGCTATATATAGAGAGGGATAACCGAGAGTTGCTCAAATGATAATTACCTCATATTCTCGATCCTAAAATTATGAAAAAAATTGGATTATAAAGAGAGGTTTTTGAAAGAAAAAAAATCCCCTTTTAACAGTTAAATACATGCATACCAGCAAATGACTTTCTAATACTTACTTGGAAAATGACTTTCTCCGTATCAAACATAATTTTTACGAATTTTTTTCTATTTCAAATATTATTTTCGATATACACTAAAAACATCTAAGGTACAAGAAGGACCCCTTGTTTTTTGTGATGAACCAAAACAATAAGTTATCCGTCTACTTCAATCAAAGCTATTTGCAAGCCTTTGCTTCTTATCATTTTTCATTTGATAGAACCGAGACCGTAATTATTTTTTAAATTTTTTTATATATATTGATAATATGAAAAAATAAATAATTTTTGTTTTTTACACATGTGTAAAGTGCATATATATTAAGGAGATATTATAACATATTTGAAAAACTCAAAAAGCAAAAGTTCAAAAACTTAAATTCATATGTCATATTCAATGGTAATAATGGAAGGCCAAATTCCTGTCGAACAATTGTCCTTGCTTTACTAATTATGGTGGCTGAATGAGGACCTATATTTTTTTATTTTACCTATATCTATAGGAAGAGAGAATAATAAATTGACAAAATTTAATGTAGGGGTGACATGTTTTAATTTTGTAATTTGTGCATGTTAATTAATATGGATAGAATATACTTTACATGATTAAGCTTAAAGATTTTTCGACTGTCAAATCAAAGCCGTAAAACAAAAAAATAATAATTATGTTGGGACAAAAATACCCTATCCGTTTTAATTTTTCTTTCTTTGATTTTGTTTAAATATGTTACTTTAAGATTTTTTTTTTGAATTATGTATTATAAACTAAAGACATGTGTAATATATTAAAATATTGTGATCTTAAAAATATCATACGAAAATTTAGAATTAAAATTTTGTTAAAAAAATAACAATAACAGAGACTTTTTGAAACAAATTAAAAATAAAAGTAAGATAAAAAATGATAGGAGTAATAGAAGATTAGGTCTATTCATTATAAATTTGATATTATGATCGGATTAATTTTTTGAATGGAAAAAAACTAAGGATTTCAACAAATTTTAGGGAAGAAAAGAAGGGAAAATGAGTTAATCCTCAATAAAAAAAATTAATTATTAAGAAGAATACTTTTGACACCCAATAAGAAATCATAAATAAATAAAAAATCCAAACTTTAGGTTACATTAAACACGTTGTAAATTCCCCATCACTCTCTTTCATGATGTCAAATCTAGTTCTAAGAGATTTTGGGACAATTCCTCTTTATCCATCCAACACATACAAACACATGGGAGATTTTTTTTATTTTTCATTTTTAAAAAAATGAAGGAGAAATTTCTACAATTTTCCAAATTTTCTTTTATATAATTTCATCATTTTATTTAATTATCAAAACCCTAGCTAGAAAAAGAAATCAACTCACCGGTTTCCCCACTTGGCATGTAGTTCCATGATCAACAATTGTTCCTCCGGTGTAATATTTCCCCTCCGAACATCAGGTCGGAGATAATTAAGCCATCTAAGTCTACAACTTTTTCCAGTACGCTTCAAACCTATTACACACGAAAAAAATTAAATATATACAACATAATTAAGCCCCAATCTAAACATGACGATCAATTAGTACCAGCGGATCGAGCGAGGGAATTCCAAACACCTTCACCATGATTAGCAATGTAATTGATGAGAATCAAATCTTCTTCCATAGTCCAAGGACCTTTCCTAACTTCAACATCTTGAGAATCACATGTTCTTTTATCCATTTTTTTTATATAATAAAGAAGAGAAGAGGAATGGGATGTGAAGAAAAAAGTTTTTTTTTTTTTTGTAGTTGGAGATTTTGACGAGGAACTAACGTTAGTTGGGGCTGATATTTATAGGGGACAACTAAAATGAGATTTTAAAACAGTAATTAAGTCTTTTAACTTTTAACCTAACTTGCGCTAAATAATTTATATACTATAAAGTTCTTACTTATACTTAATCGTCGTTATCGTTAATTGACGAGCATAAATAACAGCCAACGATGTGTGCGTGCATGGTCACAACGAGCTAGTGCTTACTAATTAATTAGTTCGATTTGATCAATTATATACGCTGACAGTTAAATTTATTTAAAGTGTATAATATTAGTGTTGCTTTTAATAAGTAAACAAGGAAACTAGCTATTTATGCATAGAAACCCCAATAATTTCACATTAGATTTAAATTGAAGTGTAACTTTTTTTTACATTATCAATGAATTATTTTGTATATATTTTACGTATTTTCAATGTATAAAACTTTATATGTACCTTTTAGTTATTTAATCGCACAATATTTTTATATAGGGAAAATTGTATATAATACCAAACTAATAATCTAAAATAAATGGAGTAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGCCAAAATTTGCCAGGCGCCTCTCTCCCAAAAATCTCACTCGTCACTCTCCCATTCTCGCTCGTCACTCTCCCTCTGCTCGCCTCTCTCGCTTTATACACAGAAGTGTATAATTTATGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAACATATACTTCAATTCAATTGTAGACAAATGCAAATTTTACAAATATTGCAGAGAAAAAGGTCAACGAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGAAAAACATATATTTTCTTGCTATACACTTATAATTATGCAATATACATATATTTTA</genome_strand>
        <mrna_strand>TCTGTTTCTATTTTGTATAAAGCGAGAGAAAATTG--TATATACACATGTAAAAATATATATCTTCGTGTTATACACTTAATTATACAAATTACAAACATTTTACTTCAAATATTGCAG..............................................................................................................AGAAAAAGGCCAACGAATTATACAATTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATATAATTGCAGTGAAATACAATTTTCTCTAACTTTATACAACAGAAGTGTATATATTGTGTTTTTGTTTTTGTATAAAGCGAGACAAAAACATATATATTCTTGCCATACACTTATAATTATGCAATATACATACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622939" ref_strand="+" ref_description="SGN-E622939 [73312]">
      <seq>aaatactttttttcttcacaacccatccctcttctcttctttattatataaaaaaaaatggataaaagaacatgtgagtctcaagatgttgaagttaggaaaggtccttggactatggaggaagatttaattctcatcaattacattgctaatcatggtgaaggtgtttggaattcccttggctcgatccgctggtttgaagcgtactggaaaaagttgtagacttcgatggcttaattatctccgacctgatgttcggaggggaaatattacaccggaagaacaactgttgatcatggaactacatgccaagtggggaaaccggtggtcgaaaattgcaaagcatttacctggaagaacagataatgagataaaaaacttctggagaacaagaattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="61400" stop="64642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61889" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61890" i_stop="61963" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61964" g_stop="62093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="324" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62094" i_stop="64264" i_length="2171">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64265" g_stop="64342" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="402" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E622939" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61889"/>
          <exon e_start="61964" e_stop="62093"/>
          <exon e_start="64265" e_stop="64342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATAT-AAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCC-TCGCTCGATCCGCTGGTACTAATTGATCGTCATGTTTAGATTGGGGCTTAATTATGTTGTATATATTTAATTTTTTTCGTGTGTAATAGGTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAATTTACAACGTGTTTAATGTAACCTAAAGTTTGGATTTTTTATTTATTTATGATTTCTTATTGGGTGTCAAAAGTATTCTTCTTAATAATTAATTTTTTTTATTGAGGATTAACTCATTTTCCCTTCTTTTCTTCCCTAAAATTTGTTGAAATCCTTAGTTTTTTTCCATTCAAAAAATTAATCCGATCATAATATCAAATTTATAATGAATAGACCTAATCTTCTATTACTCCTATCATTTTTTATCTTACTTTTATTTTTAATTTGTTTCAAAAAGTCTCTGTTATTGTTATTTTTTTAACAAAATTTTAATTCTAAATTTTCGTATGATATTTTTAAGATCACAATATTTTAATATATTACACATGTCTTTAGTTTATAATACATAATTCAAAAAAAAAATCTTAAAGTAACATATTTAAACAAAATCAAAGAAAGAAAAATTAAAACGGATAGGGTATTTTTGTCCCAACATAATTATTATTTTTTTGTTTTACGGCTTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGTAATTGGAAATGAAAGAAGTATATTTTAAACTAAAATGTTATATATAACATGTAATTTGCCTATTTTTTTCAGGTGGATACTATGAATTCTTTTAAAAGGTTATAATATAGACATAAAATTCCAATAAAATTAATTATTATGATATACAGGTGGTCGAAAATTGCAAAACATTTACCTGGTAGAACAGATAATGAGATAAAGAACTTATGGAGGACAAGAATTCAAAA</genome_strand>
        <mrna_strand>AAATACTTTTTTTCTTCACAACCCATCCCTCTTCTCTTCTTTATTATATAAAAAAAAATGGATAAAAGAACATGTGAGTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAGGAAGATTTAATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTTGGCTCGATCCGCTG..........................................................................GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTCGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAAGAACAACTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCGAAAATTGCAAAGCATTTACCTGGAAGAACAGATAATGAGATAAAAAACTTCTGGAGAACAAGAATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329771" ref_strand="+" ref_description="SGN-E329771 [cTOD-3-C6]">
      <seq>ttttcttcacatcccattcctcttctcttctttattatataaaaaaaatggataaaagaacatgtgattctcaagatgttgaagttaggaaaggtccttggactatggaagaagatttgattctcatcaattacattgctaatcatggtgaaggtgtttggaattccctcgctcgatccgctggtttgaagcgtactggaaaaagttgtagacttagatggcttaattatctccgacctgatgttcggaggggaaatattacaccggaggaacaattgttgatcatggaactacatgccaagtggggaaaccggtgagttgatttctttttctagctagggttttgataattaaataaaatgatgaaattatataaaagaaaatttggaaaattgtagaaatttctccttcatttttttaaaaatgaaaaataaaaaaaatctcccatgtgtttgtatgtgttggatggataaagaggaattgtcccaaaatctcttagaactagatttgacatcatgaaagagagtgatggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="61407" stop="62617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61707" g_stop="61889" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61890" i_stop="61963" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61964" g_stop="62317" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="537" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E329771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61707" e_stop="61889"/>
          <exon e_start="61964" e_stop="62317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTGGTACTAATTGATCGTCATGTTTAGATTGGGGCTTAATTATGTTGTATATATTTAATTTTTTTCGTGTGTAATAGGTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</genome_strand>
        <mrna_strand>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG..........................................................................GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549897" ref_strand="+" ref_description="SGN-E549897 [TUS-6-G15]">
      <seq>tttcatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaactaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaanaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggattttttttctttcaaaacctctctttataatccatttttttcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62517" stop="63841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62817" g_stop="63541" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E549897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62817" e_stop="63541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAA</genome_strand>
        <mrna_strand>TTTCATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAACTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAANAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTC-AAAACCTCTCTTTATAATCC-ATTTTTTTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549951" ref_strand="+" ref_description="SGN-E549951 [TUS-5-K20]">
      <seq>tttgacttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgtnaaaggggaattttttttctttcaaaacctctctttataatccatttttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62517" stop="63839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62817" g_stop="63539" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E549951" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62817" e_stop="63539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCAT</genome_strand>
        <mrna_strand>TTTGACTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTNAAAGGGGAATTTTTTTTCTTTC-AAAACCTCTCTTTATAATCC-ATTTTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398398" ref_strand="+" ref_description="SGN-E398398 [TUS-37-M1]">
      <seq>tttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcctaaaaattatgtttgaaacggagaaagtcattttccaagtaagtattaaaaagtcatttgctggtatgcatgtatttaactgttaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62517" stop="63791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62817" g_stop="63491" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E398398" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62817" e_stop="63491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGG</genome_strand>
        <mrna_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCCTAAAAATTATGTTTGAAACGGAGAAAGTCATTTTCCAAGTAAGTATTAAAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369181" ref_strand="+" ref_description="SGN-E369181 [TUS-23-I2]">
      <seq>ttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62518" stop="63799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62818" g_stop="63499" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E369181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62818" e_stop="63499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTT</genome_strand>
        <mrna_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243532" ref_strand="+" ref_description="SGN-E243532 [cLED-34-P2]">
      <seq>ttgatctgacagtctaaaaatctttaagcttaatcatgttaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattgggtcaatatattattctctcttcctatacatataggtaaaataacaatgatataggtgctcattcagccaccataattagcaaagcaaggacaattgttcgacaggaatttggccttgcattattaccattgaatatgacatatgaatttaagtttgagaacttttgctttttgagcttttcacatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttatttcttcatattatcgatatatataaacaaatttaaaaaataattacggactgggctctatcaaatgaaaaatgattagaagcaatggcttgcaaatagctctgatcgaagtagacggataacttattgttttggttcatcacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62518" stop="63627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62818" g_stop="63327" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E243532" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62818" e_stop="63327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAA-AAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAA</genome_strand>
        <mrna_strand>TTGATCTGACAGTCTAAAAATCTTTAAGCTTAATCATGTTAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTGGGTCAATATATTATTCTCTCTTCCTATACATATAGGTAAAATAACAATGATATAGGTGCTCATTCAGCCACCATAATTAGCAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTGCATTATTACCATTGAATATGACATATGAATTTAAGTTTGAGAACTTTTGCTTTTTGAGCTTTTCACATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTCTTCATATTATCGATATATATAAACAAATTTAAAAAATAATTACGGACTGGGCTCTATCAAATGAAAAATGATTAGAAGCAATGGCTTGCAAATAGCTCTGATCGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231197" ref_strand="+" ref_description="SGN-E231197 [cLED-5-K20]">
      <seq>ttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaanaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62518" stop="63470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62818" g_stop="63171" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E231197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62818" e_stop="63171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAA</genome_strand>
        <mrna_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAANAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389619" ref_strand="+" ref_description="SGN-E389619 [TUS-4-K20](-)">
      <seq>tttcatattatcaatatatataaaaaaaattaaaaaataattacggtccggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggattttttttctttcaaaaacctctctttataatccaatttttttcataattttaggatcgagaatatgaggtaattatcatttgagcaactctcggttatccctctctatatatagcaaaacattgaaactggttaaaatcacttccccttgaggatagtttaagttatgtatatataaattaagtttgatatgataactcacaaatagaaagaataaccttttacaatcaattaaattgagctgataatgtaaaatatcggtatatataactgaaatatgcatgtatacaagctctgggacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="62882" stop="64098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63182" g_stop="63798" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E389619" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63182" e_stop="63798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCA</genome_strand>
        <mrna_strand>TTTCATATTATCAATATATATAAAAAAAATTAAAAAATAATTACGGTC-CGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCTCTGGGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329764" ref_strand="+" ref_description="SGN-E329764 [cTOD-3-O17]">
      <seq>tcggttatccctctctatatatagcaaaacattgaaactggttaaaatcacttccccttgaggatagtttaagttatgtatatataaattaagtttgatatgataactcacaaatagaaagaataaccttttacaatcaattaaattgagctgataatgtaaaatatcggtatatataactgaaatatgcatgtatacaagcagtgggacttcaaatatcagccacagaacatgtatacaacctcgattctttaccaaaaattaaacgtgacttaaaagtttaatttcaatataatctgaaataagtagttttcattcatttcatatttagtgtcttaatttcactatacacaaaggttaaagaatgaaaagaagataatctgtgatcttaaatataattaataatgtatattttaaattttattatcttaaatttatcaggaaaaatattgaaattgaaatacttattaaatatatatataaaaaaaccactcttcttgtgataaactcaaaaaataaaataagaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="63285" stop="64415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63585" g_stop="64115" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E329764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63585" e_stop="64115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</genome_strand>
        <mrna_strand>TCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204898" ref_strand="+" ref_description="SGN-E204898 [cLEC-14-J4]">
      <seq>aaagtggaaatgggtagggcctttgtgtatgtaatattgggaggaggagttgctgctggttatgcacctcatgaatttgttaaacgaggtgtctctcatggcgaactatgcatcatctctgaagaacctgttgctccttatgaacgacctgcattaagcaagggttatttactaccagaagatcctgcacgtctgcctgcttttcattgttgtgttggttcaaatgaggaaaggttgacaccgaagtggtacaaggaaaacggcattgagctggtccttggaactcgtgtaaaatcagctgatgtgagaaggaagacattgttgaccgcaaccggtgaaaccataacctacaagattctcatagtggcaactggtgctcgggctatgaagcttgaagagtctggagtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="72891" stop="75850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73191" g_stop="73319" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73320" i_stop="74106" i_length="787">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74107" g_stop="74158" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="181" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74159" i_stop="74415" i_length="257">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74416" g_stop="74496" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74497" i_stop="75420" i_length="924">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75421" g_stop="75539" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="381" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E204898" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73191" e_stop="73319"/>
          <exon e_start="74107" e_stop="74158"/>
          <exon e_start="74416" e_stop="74496"/>
          <exon e_start="75421" e_stop="75539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCTGTAAATATTACTTCTCTTGTATTACTTGATTCCTTACTTTTTTTTTCCTTCTTCGAGCTCAGTTTCAGCATTCTTTTGATGTTTTTATCTTCTTCTTGTTCTTTCTTTATCTGTGTGTTGCTGCTTATTTATTATAAAACGTTGTAAATGTTCAATTTTGTGAATTCTTATGCGTGTAATCCAATTTGAGTAGGTTTTTTCTTATCTGAGCTGAATTTGGGGTTTTGTGATGACTTTTCGAGTCTAGAATAAAGTTTAATTTATAATCACATTGAAACTGTAGCTTCTACATAGTTTTAGGAGGAACGTAGTGATACTTGAATTGGTAGGATGAATCCCAAAAATCTGTTCTGATTCCAATAACACTGTCACATGATAGAAATGCTAATAATCTGTAGATCTGATATTGAGTTTTTAGTGCATACCGCCTACTTGTGAAGTGCTGCTGGAATGGTTATTTCTTTTTCCTGTTCCTCCCTCTCCTCATTCATTTTCTAGGAGGCAAAAAGATGCATAAACTTATCAATTTATTTATCTCTGATCCAATTTAATGTCATTAGAAATAATAAAGATCATAGCTTCGAGTAATCTGCCTCTTTTATCTATCTTGATCTTTTACCTTCCTTGAGTTAAAACTAATGTCATTAACAAAGGAAGACCAAAATTCATCAGATGCTTCCTTATGGAGACAATCATTCAATGGATGGGTAACACATGATGGCTCTCTCTTGTTTGAGCTTCCTGAAGTTTCCTACCTCATCTTCTAAACTTCTGCTGTTCTTTTCAGGTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAGGTATCTCCCAGTCACCTCACCCCTGTTCAGATTTTTGTCTTAGACATCTTCCAAGTGGATGTTAATGCTTTCTTTAGATTTAAAGATAAGTTTTATTGTGCACTGTAACTTTGGGGAAATATCCTACAAGCATTAATGGTGGAATAATCCCTGGCTCTAGTTACAGTCACTTAACAAGAGTTATCTGGATGAATTGTTTCTTCTTTTCTCTCCTTTGTTCATTATTTTTTAACCTTTTGAGATTTTATTCTATGCAGATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACGGTAAATTTTAAATATCTTTTGCTTCCATTGGCTTTAAATATTTTAGCAGGCGTCATTGTAATTGATCAATTTTTATTTATGGTTGTCATAGATATATTTAGAATTGTCCAAAGTGAGCATTGCAGTTACTGACTGCCTTGAACGTATAAATGTTATTGAATTACTTGCATAGAGGTTTCACACTATGTGTTATTCTATTGTAGTTGATGTTGCAGCATCATTTTGTTGTTGGCATTTGCTTAAGGAATTAAAAAATCCAGAAGTAATCACATATACTTGACGACATGCCCATACACCTCATTTAAAAAATGTCTGAAGGATTACAAATTAAGAGCTTAACTGGACTGTTCCAATTAGTTTAATTCATCACATATGGATGTCTTCAGGGTCAAGTTTGATGTTTGTCTCACCTTTTGTATGACTACCTATTGAGAGGATAGTTGTTTCATAAAAGAAGAAAAAGGATTAACCTTTTCATTCAGAAGGTCATCTTTGCTTGATGTACTAGAAACCTTGTTATATAGGAAGACCATGAACTATTTCCTGATATTTAATATCTTCTTACGTTTCATGTTTAGCCAACATTTTGAAAGATTAGAATCAGGGGAAAAGATTTTGAGACTGAGATCCATGCTTTTCTTGGGCTGTAATTAGCTGCAGCAATACTGGTTTTTAAATCACGTAAAATGAAGCTTCAATAGCCATAGTCATCATAAGGTTTTGGAATTGATCTCTTTTCATGGAATGCACTAGCTGGGAACGGCAACGAAAAAATGCTGCTGGTATATGGCATCAGTGATCAGAATATGTTATTATGTTGAGCTATTTCTTTTTTTTTTTGGTTACTTTTTAGTGCAAAAGAATGAGGTATTTAATATCTTTCCAAGGATATTGATTAGTCATTGATTGTTCTATTGCCTTTAGGCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG</genome_strand>
        <mrna_strand>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCACCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAG.................................................................................................................................................................................................................................................................ATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740678" ref_strand="+" ref_description="SGN-E740678 [LC22BG09]">
      <seq>gtggaaatgggtagggcctttgtgtatgtaatattgggaggaggagttgctgctggttatgcagctcatgaatttgttaaacgaggtgtctctcatggcgaactatgcatcatctctgaagaacctgttgctccttatgaacgacctgcattaagcaagggttatttactaccagaagatcctgcacgtctgcctgcttttcattgttgtgttggttcaaatgaggaaaggttgacaccgaagtggtacaaggaaaacggcattgagctggtccttggaactcgtgtaaaatcagctgatgtgagaaggaagacattgttgaccgcaaccggtgaaaccataacctacaagattctcatagtggcaactggtgctcgggctttgaagcttgaagagtttggagtgagtggctcagatgctgagagtgtatgttatttacgggatttggctgatgcaaacaggctggttaatgtgatgcaatctagcggtggtggcaatgctgttgtaattggtggtggctacataggaatggaatgtgctgcttctttggtgatcggcaaaataaatgtcaccatggtctttccagaagcacactgtatggcccgcctatttactcctaaaattgcaagtttctacgaagaattttaccggtcaaaaggagttaagtttgtgaaaggcacggtcttgacatcatttgatttcgactccaatgataagatgactgcggtgaatttgagagatggaaccaagctacctgctgacatggtcatcgtaggcattggaattcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggncaaatgcagtcaagcaacagctcagtctatgctgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="72894" stop="78270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73194" g_stop="73319" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73320" i_stop="74106" i_length="787">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74107" g_stop="74158" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="178" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74159" i_stop="74415" i_length="257">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74416" g_stop="74496" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="259" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74497" i_stop="75420" i_length="924">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75421" g_stop="75539" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="378" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75540" i_stop="76512" i_length="973">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76513" g_stop="76732" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="598" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76733" i_stop="77320" i_length="588">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.272" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77321" g_stop="77439" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="717" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77440" i_stop="77795" i_length="356">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77796" g_stop="77970" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="892" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E740678" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73194" e_stop="73319"/>
          <exon e_start="74107" e_stop="74158"/>
          <exon e_start="74416" e_stop="74496"/>
          <exon e_start="75421" e_stop="75539"/>
          <exon e_start="76513" e_stop="76732"/>
          <exon e_start="77321" e_stop="77439"/>
          <exon e_start="77796" e_stop="77970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCTGTAAATATTACTTCTCTTGTATTACTTGATTCCTTACTTTTTTTTTCCTTCTTCGAGCTCAGTTTCAGCATTCTTTTGATGTTTTTATCTTCTTCTTGTTCTTTCTTTATCTGTGTGTTGCTGCTTATTTATTATAAAACGTTGTAAATGTTCAATTTTGTGAATTCTTATGCGTGTAATCCAATTTGAGTAGGTTTTTTCTTATCTGAGCTGAATTTGGGGTTTTGTGATGACTTTTCGAGTCTAGAATAAAGTTTAATTTATAATCACATTGAAACTGTAGCTTCTACATAGTTTTAGGAGGAACGTAGTGATACTTGAATTGGTAGGATGAATCCCAAAAATCTGTTCTGATTCCAATAACACTGTCACATGATAGAAATGCTAATAATCTGTAGATCTGATATTGAGTTTTTAGTGCATACCGCCTACTTGTGAAGTGCTGCTGGAATGGTTATTTCTTTTTCCTGTTCCTCCCTCTCCTCATTCATTTTCTAGGAGGCAAAAAGATGCATAAACTTATCAATTTATTTATCTCTGATCCAATTTAATGTCATTAGAAATAATAAAGATCATAGCTTCGAGTAATCTGCCTCTTTTATCTATCTTGATCTTTTACCTTCCTTGAGTTAAAACTAATGTCATTAACAAAGGAAGACCAAAATTCATCAGATGCTTCCTTATGGAGACAATCATTCAATGGATGGGTAACACATGATGGCTCTCTCTTGTTTGAGCTTCCTGAAGTTTCCTACCTCATCTTCTAAACTTCTGCTGTTCTTTTCAGGTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAGGTATCTCCCAGTCACCTCACCCCTGTTCAGATTTTTGTCTTAGACATCTTCCAAGTGGATGTTAATGCTTTCTTTAGATTTAAAGATAAGTTTTATTGTGCACTGTAACTTTGGGGAAATATCCTACAAGCATTAATGGTGGAATAATCCCTGGCTCTAGTTACAGTCACTTAACAAGAGTTATCTGGATGAATTGTTTCTTCTTTTCTCTCCTTTGTTCATTATTTTTTAACCTTTTGAGATTTTATTCTATGCAGATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACGGTAAATTTTAAATATCTTTTGCTTCCATTGGCTTTAAATATTTTAGCAGGCGTCATTGTAATTGATCAATTTTTATTTATGGTTGTCATAGATATATTTAGAATTGTCCAAAGTGAGCATTGCAGTTACTGACTGCCTTGAACGTATAAATGTTATTGAATTACTTGCATAGAGGTTTCACACTATGTGTTATTCTATTGTAGTTGATGTTGCAGCATCATTTTGTTGTTGGCATTTGCTTAAGGAATTAAAAAATCCAGAAGTAATCACATATACTTGACGACATGCCCATACACCTCATTTAAAAAATGTCTGAAGGATTACAAATTAAGAGCTTAACTGGACTGTTCCAATTAGTTTAATTCATCACATATGGATGTCTTCAGGGTCAAGTTTGATGTTTGTCTCACCTTTTGTATGACTACCTATTGAGAGGATAGTTGTTTCATAAAAGAAGAAAAAGGATTAACCTTTTCATTCAGAAGGTCATCTTTGCTTGATGTACTAGAAACCTTGTTATATAGGAAGACCATGAACTATTTCCTGATATTTAATATCTTCTTACGTTTCATGTTTAGCCAACATTTTGAAAGATTAGAATCAGGGGAAAAGATTTTGAGACTGAGATCCATGCTTTTCTTGGGCTGTAATTAGCTGCAGCAATACTGGTTTTTAAATCACGTAAAATGAAGCTTCAATAGCCATAGTCATCATAAGGTTTTGGAATTGATCTCTTTTCATGGAATGCACTAGCTGGGAACGGCAACGAAAAAATGCTGCTGGTATATGGCATCAGTGATCAGAATATGTTATTATGTTGAGCTATTTCTTTTTTTTTTTGGTTACTTTTTAGTGCAAAAGAATGAGGTATTTAATATCTTTCCAAGGATATTGATTAGTCATTGATTGTTCTATTGCCTTTAGGCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGGGTATCTAATTTATCTTCGGGCTCTTCTGCTGTAGCACCATATTTTGTTGCATTTTTTATGCATCAAGACATTAGAGTAGTGTCCTCTTCTGATGGAATGAATAAGCAGGGGCAAATGCAACTTCAAGTTACTGGGTTCGGATCCAGTACTTTTGATGTAGAACATAAAGTTATTTGCAACAAATTGTAGATGTGAACCCGTAACTTCAAAAATATAATGAGTTCAATGCTAAGAACCCTTGTGCGTTCTACCCTAAAGGTTCTTAGCAATGTAATTTTATAAGTGGGGTCTTGAGAGGGTAGAGTGTATGCAAATCTTACCCCTGCCTCTTTATCTTTACGAGGTAGGGGTAAAGTATGCGTATAACCTACCCTCCCCAGACCCCACTTGTGGGATTACAGTGGGTATGTTGCTTGGTTCTTGAGAACCTTATAGGTGCAGCCCTCCTGGATCTGTCTCCGTTAATAAGGTCTAGATACTTCCTTTAAGTGATTTCCCAGAGAAGTCAGTGGATACTGAAATACAATTCTGCTGTACCAGCTAGGAAAGAAAATGAAAATTCTGTTGTTTCACAATACCTTAGCTTCTTCACACTATTGTGCAGGTGATTTTTATAGTTTGTTTATATCTGTTTTATTTCTTGGTTCCTCTCCATAGGGACCGTGAAAATAATGTTAAGAATTAGTAGCATAAAAATTGCCCATACAATCATTTTGATATGTATCCTGCAGAAACTAGGTGTCAAGCTTGTTAGCATAGATGTTAGGATTCATGGACATTCAGATGAGTAGAGTTCATTTAGTTCAGTACTAGAATTTTGAAACAGAGTTAAATTAATTAGTGCGCTCTGAGGGTTCATGCCAAAAGCTTTATTTGGTGTGGACTAAGTTCAATCTCAAAGACCAAGCTCCCTAGTGAACAATGAAATTGAATTTTATGAAGTCTCTGACTTTTGGTTGGCATGTTTTGTTAGGCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTAGTAAGTATTCTTTTGTGAAGATGGAAAGCTTTCGTTTCTTTTTTTAACTCGAGTTTCTTTAGGTTGCTTGTAAATTATATTCTTTTGTGAAGTTGGAGAACTTTCTTTTCTGTTTCTTACTCGAGTTTCTTTAGATTGCTTGTAATATATCAGAAGTAAGAACTGTGTTTTCTCCTCTCTAGAGAATTATGTATTAGTATAACTTTAGTAGTTGCGTTTTATCCAGAAAATACAAACCACAATCTGAAATCTAGTACATGCCTTACTCTCCAAACCATGCTATTAGTACAGAAAACAGTGATCTCAGTAATCAACAAATGCTATAAAGATATGAAAATTGATCAGAATGTGGGACTTCTGCCCTCATATTTCCTCAAAATATGAAATCATCGATTGAAAGCTTATGTATGAGAAAAACTGATTTGTTTCTTAATTCTCAAAACCCAAAGTCCAAGAGTTACTTACAGATATAAACCATAAATGTGCAACCATTGCTGTTCTATCTTAAGTTCATCAGTAAACAAACTGTTGTTTTTTCTAATGATTTTATAAAGCATTTAATTTTCTTCCCTTTTCTTTTGTTGTTAGTGGCCCGCCTATTTACTCCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAGGTAAAGCCTGTTGCTTGCTTCACTTTGGTGGTGTTTTCTTTGAAAGCTGTTCGCAGACGTGTTTGTTTGAACTGCTTTTTCATTTACCTCTTCTTGAACATTTCCAACCTCAATTTCACTAGGTACTTTGTTAATGCAAACTCAGTTTATTAGTTTCTGAAAACAGCTTCTATTTGTTATCCTTTTTTATTTGAATAAGAAAAGGTTAACTTTTACTGAAAGAGTGAATATTCTTGAACTCCGTTTAACAAGTCACTTTGTTAAGCTGGAACTAACATTAATCATCATTTCACAATTTTATATATCACTGAAGTTATAATGGACATGATGCTTGAATGCGGGGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGG</genome_strand>
        <mrna_strand>GTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAG.................................................................................................................................................................................................................................................................ATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCGCCTATTTACTCCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAG....................................................................................................................................................................................................................................................................................................................................................................ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGNCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597520" ref_strand="+" ref_description="SGN-E597520 [67389]">
      <seq>ctcgggctttgaagcttgaagagtttggagtgagtggctcagatgctgagagtgtatgttatttacgagatttggctgatgcaaacaggctggttaatgtgatgcaatccagcggtggtggcaatgctgttgtaattggtggtggctacataggaatggaatgtgctgcttctttggtgatcggcaaaatcaatgtcaccatggtctttccagaagcacactgcaatgactgcagtgaatctgagagatggaaccaaactaccagccgacatggtcatagtaggcattggaattcgaccaaataccagcctctttgaagggcagcttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgttaaaattttcggtgaaacacggagacttgaacacgttgattctgcaaggaagtcagcaaggccatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggccagttctatggtgacagtactggttgatgtagtccattttggggatttcttggggcaatagctttgggtgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="76212" stop="78513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76513" g_stop="76732" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="225" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76733" i_stop="77795" i_length="1063">
            <donor d_prob="0.804" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77796" g_stop="78213" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="648" r_length="423" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E597520" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76513" e_stop="76732"/>
          <exon e_start="77796" e_stop="78213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTAGTAAGTATTCTTTTGTGAAGATGGAAAGCTTTCGTTTCTTTTTTTAACTCGAGTTTCTTTAGGTTGCTTGTAAATTATATTCTTTTGTGAAGTTGGAGAACTTTCTTTTCTGTTTCTTACTCGAGTTTCTTTAGATTGCTTGTAATATATCAGAAGTAAGAACTGTGTTTTCTCCTCTCTAGAGAATTATGTATTAGTATAACTTTAGTAGTTGCGTTTTATCCAGAAAATACAAACCACAATCTGAAATCTAGTACATGCCTTACTCTCCAAACCATGCTATTAGTACAGAAAACAGTGATCTCAGTAATCAACAAATGCTATAAAGATATGAAAATTGATCAGAATGTGGGACTTCTGCCCTCATATTTCCTCAAAATATGAAATCATCGATTGAAAGCTTATGTATGAGAAAAACTGATTTGTTTCTTAATTCTCAAAACCCAAAGTCCAAGAGTTACTTACAGATATAAACCATAAATGTGCAACCATTGCTGTTCTATCTTAAGTTCATCAGTAAACAAACTGTTGTTTTTTCTAATGATTTTATAAAGCATTTAATTTTCTTCCCTTTTCTTTTGTTGTTAGTGGCCCGCCTATTTACTCCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAGGTAAAGCCTGTTGCTTGCTTCACTTTGGTGGTGTTTTCTTTGAAAGCTGTTCGCAGACGTGTTTGTTTGAACTGCTTTTTCATTTACCTCTTCTTGAACATTTCCAACCTCAATTTCACTAGGTACTTTGTTAATGCAAACTCAGTTTATTAGTTTCTGAAAACAGCTTCTATTTGTTATCCTTTTTTATTTGAATAAGAAAAGGTTAACTTTTACTGAAAGAGTGAATATTCTTGAACTCCGTTTAACAAGTCACTTTGTTAAGCTGGAACTAACATTAATCATCATTTCACAATTTTATATATCACTGAAGTTATAATGGACATGATGCTTGAATGCGGGGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGG-CATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGG-CAGTTCTATGGTGACAGTACTGG-TGATGTAGTCCATTTTGGGGATTTCTTGGGG-AATAGCTTT-GGTGCATATT</genome_strand>
        <mrna_strand>GCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGAGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCCAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATCAATGTCACCATGGTCTTTCCAGAAGCACACTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGCAGTGAATCTGAGAGATGGAACCAAACTACCAGCCGACATGGTCATAGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAGCTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTTAAAATTTTCGGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCCAGTTCTATGGTGACAGTACTGGTTGATGTAGTCCATTTTGGGGATTTCTTGGGGCAATAGCTTTGGGTGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705168" ref_strand="+" ref_description="SGN-E705168 [FA26BD11]">
      <seq>cgttaagtttgtgaaaggcacggtcttgacatcatttgatttcgactccaatgataagatgactgcggtgaatttgagagatggaaccaagctacctgctgacatggtcatcgtaggcattggaattcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtangaagcgtanaaagtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaaatttgaatacttggcctggtaatggcttcaattttacaacatgtattctgtctttacagtatatatcaatacacattatcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77083" stop="78986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77382" g_stop="77439" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77440" i_stop="77795" i_length="356">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77796" g_stop="78696" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="958" r_length="900" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E705168" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77382" e_stop="77439"/>
          <exon e_start="77796" e_stop="78696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAGGTAAAGCCTGTTGCTTGCTTCACTTTGGTGGTGTTTTCTTTGAAAGCTGTTCGCAGACGTGTTTGTTTGAACTGCTTTTTCATTTACCTCTTCTTGAACATTTCCAACCTCAATTTCACTAGGTACTTTGTTAATGCAAACTCAGTTTATTAGTTTCTGAAAACAGCTTCTATTTGTTATCCTTTTTTATTTGAATAAGAAAAGGTTAACTTTTACTGAAAGAGTGAATATTCTTGAACTCCGTTTAACAAGTCACTTTGTTAAGCTGGAACTAACATTAATCATCATTTCACAATTTTATATATCACTGAAGTTATAATGGACATGATGCTTGAATGCGGGGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</genome_strand>
        <mrna_strand>CGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAG....................................................................................................................................................................................................................................................................................................................................................................ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTANGAAGCGTANAAAGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAAATTTGAATACTTGGCCTGGTAATGGCTTCAATTTTAC-AACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403098" ref_strand="+" ref_description="SGN-E403098 [PPC-9-J19]">
      <seq>ggactttttatgtagatgactgcagtgaatctgagagatggaaccaaactacctgccgacatggtcatagtaggcattggaattagaccaaataccagcctctttgaagggcagcttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgttaaaattttcagtgaaacacggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatactgggtgaacaaaggtcacgtcgttgggtcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77481" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77781" g_stop="78247" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E403098" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77781" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCT</genome_strand>
        <mrna_strand>GGACTTTTTATGTAGATGACTGCAGTGAATCTGAGAGATGGAACCAAACTACCTGCCGACATGGTCATAGTAGGCATTGGAATTAGACCAAATACCAGCCTCTTTGAAGGGCAGCTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTTAAAATTTTCAGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATACTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372193" ref_strand="+" ref_description="SGN-E372193 [TUS-30-P6]">
      <seq>ttcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaagtggtaaatgtcttgttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77563" stop="78844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77863" g_stop="78544" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E372193" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77863" e_stop="78544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCC</genome_strand>
        <mrna_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAAGTGGTAAATGTCTTGTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289166" ref_strand="+" ref_description="SGN-E289166 [cLES-18-B10]">
      <seq>ttcgaccaaataccagcctctttgaagggcaacttactcttgagaaaggagggataaaagtcaatggccaaatgcagtcaagcaacagctcagtctatgctgttggggatgttgcaacttttcctgtcaaaattttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77563" stop="78668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77863" g_stop="78368" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E289166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77863" e_stop="78368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGAT</genome_strand>
        <mrna_strand>TTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404869" ref_strand="+" ref_description="SGN-E404869 [PPC-15-H19]">
      <seq>agcaacttttcctgttaaaattttcagtgaaacacggagacttgaacacgttgattctgcaaagaagtcagcaaagcatgcagttgctgcaatcatggaaccagagaaaacaacggagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatactgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgcggctattgcaaagatcacaaagctcaaaccatcaattgaggacttgtctgatctcgaaacacagggtttaggatttgcattgacattgagtgatcaaccagagccatcngaagctgttgttgtcggcagtggttcaggttccactcttgcaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77676" stop="78807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77975" g_stop="78507" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E404869" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77975" e_stop="78507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATG</genome_strand>
        <mrna_strand>AGCAACTTTTCCTGTTAAAATTTTCAGTGAAACACGGAGACTTGAACACGTTGATTCTGCAAAGAAGTCAGCAAAGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACGGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATACTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGCGGCTATTGCAAAGATCACAAAGCTCAAACCATCAATTGAGGACTTGTCTGATCTCGAAACACAGGGTTTAGGATTTGCATTGACATTGAGTGATCAACCAGAGCCATCNGAAGCTGTTGTTGTCGGCAGTGGTTCAGGTTCCACTCTTGCAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372192" ref_strand="+" ref_description="SGN-E372192 [TUS-30-P6](-)">
      <seq>ttttcggtgagacgcggagacttgaacacgttgattctgcaaggaagtcagcaaggcatgcagttgctgcaatcatggaaccagagaaaacaacagagtttgactacttgccattcttctactccagagtcttcacactctcttggcagttctatggtgacagtactggtgatgtagtccattttggggatttcttggggaatagctttggtgcatattgggtgaacaaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaggtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaatttgaaatacttggcctgtaaatggcttcaattttacaaacatgtattctgtctttacagtatatatcaatacccattatcctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77695" stop="78986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77995" g_stop="78685" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="708"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E372192" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77995" e_stop="78685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCA</genome_strand>
        <mrna_strand>TTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACCCATTATCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716153" ref_strand="+" ref_description="SGN-E716153 [FB16BA09]">
      <seq>caaaggtcacgtcgttgggtcttttctagagggtggaaccaaagaggagtatgaggctattgcaaagatcacaaggctcaaaccagcaattgaggacttgtctgatctcgaaacgcagggtttaggatttgcattgacattgagtgataaaccagagccatcggaggctgttgttgtcagcagtagttcgggttccacttttgtaacagagaaacctttacatgtttggcatgcaacagctggagtcattttggctgcttcaattgctgcctttgcatactggtatggtaggaggcgtagaaggtggtaaatgtcttgttccccacggaagatttttacacgtcgattcctgctgtgttgtatgattttagcttagagaatttgaaatacttggcctgtaaatggcttcaattttacaaacatgtattctgtctttacagtatatatcaatacacattatcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="77921" stop="78986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78221" g_stop="78696" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E716153" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78221" e_stop="78696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</genome_strand>
        <mrna_strand>CAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723504" ref_strand="+" ref_description="SGN-E723504 [FC20CH04]">
      <seq>aatcggccgaattgatcctaatttttgtacctttaactttcactctcccaatttctctttagctcagctaccatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcaaatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaanannannaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79908" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80173" g_stop="80931" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="799"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E723504" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80173" e_stop="80931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCCCCTT-ATCCTAATTTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCCTAATTTTTGTACCTTTAACTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACCATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAAATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613457" ref_strand="+" ref_description="SGN-E613457 [63232]">
      <seq>ttctttcactcccttctcctcttttcaattcctctttagctctgccactatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccgggcacgcatcaatttccttccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcacctgagaaggtagtacagctcggagatgaaatatccactctaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgtcgtcgccgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgaatttgtggtacatgttcattcttatttggttttgattatctgggcaaattactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79893" stop="81154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80194" g_stop="80827" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E613457" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80194" e_stop="80827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTG</genome_strand>
        <mrna_strand>TTCTTTCACTCCCTTCTCCTCT-TTTCAATTCCTCTTTAGCTCTGCCACTATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCGGGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCTGAGAAGGTAGTACAGCTCGGAGATGAAATATCCACTCTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTCGTCGCCGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278823" ref_strand="+" ref_description="SGN-E278823 [cLER-2-N3]">
      <seq>ttttgtatctccctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79894" stop="80952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80194" g_stop="80652" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E278823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80194" e_stop="80652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTG</genome_strand>
        <mrna_strand>TTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476132" ref_strand="+" ref_description="SGN-E476132 [cSTB-43-M20]">
      <seq>cttctttcactcccttctcctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79903" stop="80882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80197" g_stop="80582" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E476132" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80197" e_stop="80582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCT</genome_strand>
        <mrna_strand>CTTCTTTCACTCCCT-TCTC-CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730239" ref_strand="+" ref_description="SGN-E730239 [LA23CB01]">
      <seq>cctaactaggcactctcccaatttctctttagctcagctacaacgtcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79912" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80201" g_stop="80942" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E730239" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80201" e_stop="80942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTG</genome_strand>
        <mrna_strand>CCTAACT-AGGCACTCTCCCAATTTCTCTTTAGCTCAGCTACAACGTCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202748" ref_strand="+" ref_description="SGN-E202748 [cLEB-1-M18]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaaatttctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79908" stop="81201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80201" g_stop="80901" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E202748" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80201" e_stop="80901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAA</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAAATTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202938" ref_strand="+" ref_description="SGN-E202938 [cLEB-1-L18]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79908" stop="81125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80201" g_stop="80825" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E202938" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80201" e_stop="80825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTG</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281577" ref_strand="+" ref_description="SGN-E281577 [cLEL-1-L16](-)">
      <seq>ctcccaagcttatcctgaaggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgagagttgcccggcggtggtacagtttgggagtgcgaatgggaagttctagggttttggtggggaaggaaattgaagcgtgcgtggagcttgcggttgctggagaaataggagagggagaacgaagggtaattgtggataatgtggaagccattgtagctgagctaaagagaaattgggagagtgaaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80817" stop="79908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80517" g_stop="80201" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E281577" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80517" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-CCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</genome_strand>
        <mrna_strand>CTCCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281578" ref_strand="+" ref_description="SGN-E281578 [cLEL-1-L18](-)">
      <seq>aggtactcgacgagtttctgggcatcagcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgagagttgcccggcggtggtacagtttgggagtgcgaatgggaagttctagggttttggtggggaaggaaattgaagcgtgcgtggagcttgcggttgctggagaaataggagagggagaacgaagggtaattgtggataatgtggaagccattgtagctgagctaaagagaaattgggagagtgaaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80800" stop="79908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80500" g_stop="80201" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E281578" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80500" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</genome_strand>
        <mrna_strand>AGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202811" ref_strand="+" ref_description="SGN-E202811 [cLEB-1-M19]">
      <seq>gcacgagctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79908" stop="80664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80201" g_stop="80364" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E202811" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80201" e_stop="80364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCA</genome_strand>
        <mrna_strand>GCACGAGCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715235" ref_strand="+" ref_description="SGN-E715235 [FB13CH05]">
      <seq>ctccctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgatttgtgattgttccagttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79902" stop="81254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80202" g_stop="80963" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E715235" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80202" e_stop="80963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTG</genome_strand>
        <mrna_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733405" ref_strand="+" ref_description="SGN-E733405 [LB04DE03]">
      <seq>ctctctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79902" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80202" g_stop="80938" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E733405" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80202" e_stop="80938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTG</genome_strand>
        <mrna_strand>CTCTCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732166" ref_strand="+" ref_description="SGN-E732166 [LB01BG11]">
      <seq>ccccttctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79904" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80202" g_stop="80928" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="748"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E732166" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80202" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>CCCCTTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346626" ref_strand="+" ref_description="SGN-E346626 [cTOF-28-J18]">
      <seq>ctccctctttcactctcccaatttctctttagctcagctaccaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79902" stop="81140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80202" g_stop="80840" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E346626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80202" e_stop="80840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTA-CAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTT</genome_strand>
        <mrna_strand>CTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACCAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730222" ref_strand="+" ref_description="SGN-E730222 [LA23BH05]">
      <seq>cttacaaaggctctcccaatttctctttagctcagctacaatgctttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79914" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80204" g_stop="80931" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="743"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E730222" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80204" e_stop="80931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>CTTACAAAGGCTCTCCCAATTTCTCTTTAGCTCAGCTACAATGCTTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343379" ref_strand="+" ref_description="SGN-E343379 [cTOF-19-C22]">
      <seq>cctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaacaaatttgtggtaaatgttcgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79905" stop="81142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80205" g_stop="80843" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E343379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80205" e_stop="80843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTT</genome_strand>
        <mrna_strand>CCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTT-AACAAATTTGTGGTAAATGTTCGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726992" ref_strand="+" ref_description="SGN-E726992 [LA13BF06]">
      <seq>ttctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79907" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80206" g_stop="80939" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E726992" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80206" e_stop="80939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGA</genome_strand>
        <mrna_strand>TTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728005" ref_strand="+" ref_description="SGN-E728005 [LA16BF06]">
      <seq>ctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgatctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctacaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaataaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtgataaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79906" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80206" g_stop="80938" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E728005" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80206" e_stop="80938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTG</genome_strand>
        <mrna_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGATCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTACAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAATAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGATAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726103" ref_strand="+" ref_description="SGN-E726103 [LA10BC11]">
      <seq>ctctttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaagaggctaggaattgattgaggattgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79906" stop="81026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80206" g_stop="80726" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E726103" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80206" e_stop="80726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCT</genome_strand>
        <mrna_strand>CTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTG-AAGAGGCT-AGGAATTGATTG-AGGATTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561912" ref_strand="+" ref_description="SGN-E561912 [20273]">
      <seq>caggctctcctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79914" stop="81112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80208" g_stop="80812" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E561912" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80208" e_stop="80812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGC</genome_strand>
        <mrna_strand>CAGGCTCTC-CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735921" ref_strand="+" ref_description="SGN-E735921 [LC03CG03]">
      <seq>cgttctctcccaatttctcttcagctcagctagcatggcctccaccttatccacaatgacccttcggtctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaattgccttccccaccaagaccctagaacttcccattggcacgcccaaagtgtaccaccgccgggcaactcgcgtccgccctctcgccgccggcgaagcacacggagaaggtagtccagctcggagatgaaatctcggacttaaccctcgctgatgcccacaaactcgacgagaaccttcaggataagcttggagattcagccgcatccttcgctcccgctgccgtcgccacttcccctggtggcgcagccgcaaatgctccatctgtggttgaagagaagacggaatttgatgcatccatcgatgaggtgccgagtaatgctagaattgcgaccattaaggctgtgaaggctttaaaaggtttggcattgaaagaggctaaggaattgattgaaggattgcctaaaaaatttaaggagggtgtttccagggatgaggctgaagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79914" stop="81070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80208" g_stop="80770" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E735921" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80208" e_stop="80770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCAC-CGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGC</genome_strand>
        <mrna_strand>CGTT--CTCTCCCAATTTCTCTTCAGCTCAGCTAGCATGGCCTCCACCTTATCCACAATGACCCTTCGGTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTGCCTTCCCCACCAAGACCCTAGAACTTCCCATTGGCACGCCCAAAGTGTACCACCGCCGGGCAACTCGCGTCCGCCCTCTCGCCGCCGGCGAAGCACACGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCGGACTTAACCCTCGCTGATGCCCACAAACTCGACGAGAACCTTCAGGATAAGCTTGGAGATTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGCCACTTCCCCTGGTGGCGCAGCCGCAAATGCTCCATCTGTGGTTGAAGAGAAGACGGAATTTGATGCATCCATCGATGAGGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTGAAGGCTTTAAAAGGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAAAAATTTAAGGAGGGTGTTTCCAGGGATGAGGCTGAAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343708" ref_strand="+" ref_description="SGN-E343708 [cTOF-20-H19]">
      <seq>tttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaggaggggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaaaaagctggtgctaaagtttctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79909" stop="81112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80209" g_stop="80812" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E343708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80209" e_stop="80812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGC</genome_strand>
        <mrna_strand>TTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAGGAGGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAAAAGCTGGTGCTAAAGTTTCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286263" ref_strand="+" ref_description="SGN-E286263 [cLES-11-P17]">
      <seq>ttcactctcctaatttctctttagctcagctacaatggctggcacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79910" stop="80984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80210" g_stop="80684" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E286263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80210" e_stop="80684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGT</genome_strand>
        <mrna_strand>TTCACTCTCCTAATTTCTCTTTAGCTCAGCTACAATGGCTGGCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286434" ref_strand="+" ref_description="SGN-E286434 [cLES-11-P18]">
      <seq>ttcactctcccaatttctctttagctcagctacaatggctggcacattatccacaattacccttggttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79910" stop="80962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80210" g_stop="80662" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E286434" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80210" e_stop="80662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAA</genome_strand>
        <mrna_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTGGCACATTATCCACAATTACCCTTGGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282625" ref_strand="+" ref_description="SGN-E282625 [cLER-15-M21]">
      <seq>ttcactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79910" stop="80948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80210" g_stop="80648" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E282625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80210" e_stop="80648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGA</genome_strand>
        <mrna_strand>TTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735704" ref_strand="+" ref_description="SGN-E735704 [LC02CG03]">
      <seq>cactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79912" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80212" g_stop="80944" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E735704" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80212" e_stop="80944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTT</genome_strand>
        <mrna_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736817" ref_strand="+" ref_description="SGN-E736817 [LC07BD11]">
      <seq>cactctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79912" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80212" g_stop="80944" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E736817" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80212" e_stop="80944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTT</genome_strand>
        <mrna_strand>CACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581558" ref_strand="+" ref_description="SGN-E581558 [6729]">
      <seq>ctcctcaatttctctttagctctgctacaatggcttccacattatccacaattacccttcgttcttcctctcctatttctccatcaaacccaagctccacgcacgcgtcaatttcattccttaccaaaaccctagaactccccattcgcactcccaaactctatcatcggcgagcaacttttgtccggcctctcgccggcggcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgaagcccagaaactcgtcgagtaacttcaggataagcttggagtttcagccgcatccttcgctccggctgtcgttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79916" stop="80853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80214" g_stop="80553" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E581558" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80214" e_stop="80553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCG</genome_strand>
        <mrna_strand>CTC-CTCAATTTCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTTCCTCTCCTATTTCTCCATCAAACCCAAGCTCCACGCACGCGTCAATTTCATTCCTTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCTATCATCGGCGAGCAACTTTTGTCCGGCCTCTCGCCGGCGGCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGAAGCCCAGAAACTCGTCGAGTAACTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGTCGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722772" ref_strand="+" ref_description="SGN-E722772 [FC18BB05]">
      <seq>aatcggccgaattgctcccaatttctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatganaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79913" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80215" g_stop="80931" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="730" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="745"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E722772" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80215" e_stop="80931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>GCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615458" ref_strand="+" ref_description="SGN-E615458 [65257]">
      <seq>ctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagcttctgtgtttttgcaagagaattcagttgtcagatagttgtacccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79920" stop="85332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80218" g_stop="80314" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80315" i_stop="84411" i_length="4097">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84412" g_stop="85032" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="712" r_length="615" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E615458" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80218" e_stop="80314"/>
          <exon e_start="84412" e_stop="85032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAATTCACATTCTTGTGGAGTTTCCCAAGGTTGGATTTTTTAAAGAAATTATTACTACAGCGAAATAGTAATATTAGTGTTTATTATAAATATTAAATTATTTTAGTTTAGCTTAGTTTATATCTCTAAAAAGTAAAAACCTACGAAGAGCCTGTTTGAATTGGTGTTTAGTTTGACTTATTTTTTTTTAATCATTTTAGTTTAATTTAGCTCGTTAAAAATAAGTGAATCAGGCCCTCACTAAATTTCTTTTTTCTCCAATAAAATTTCAATAATAATGGATTAAAATAAAAAATAAAAAAATGAGACCCTATATATAACCTTATCAACACAATATTCATTCCTCTTATCCTATTTTTTCTTGCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTT</genome_strand>
        <mrna_strand>CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGCTTCTGTGTTTTTGCAAGAGAATTCAGTTGTCAGATAGTTGTACCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415827" ref_strand="+" ref_description="SGN-E415827 [STM-22-C15]">
      <seq>ctcaattcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaattaaggagggntgtttccaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79920" stop="81123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80218" g_stop="80823" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E415827" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80218" e_stop="80823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGG-TGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATT</genome_strand>
        <mrna_strand>CTCAATTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAA-TTAAGGAGGGNTGTTTCC-AGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282624" ref_strand="+" ref_description="SGN-E282624 [cLER-15-M9]">
      <seq>caatttctctataactcagggggcaatggcttccacatgatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaacttctcgtccgccctctcgccgccgtcgaagcaccggagaaggtattccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggctgaggagaagacggaatttgatgtaatcatcaatgaagtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79942" stop="80935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80220" g_stop="80635" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E282624" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80220" e_stop="80635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTCTTTAGCTCA-GCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAAC-TCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCC</genome_strand>
        <mrna_strand>CAATTTCTCTATAACTCAGGGGGCAATGGCTTCCACATGATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTATTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGCTGAGGAGAAGACGGAATTTGATGTAATCATCAATGAAGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462341" ref_strand="+" ref_description="SGN-E462341 [cPRO-11-K8]">
      <seq>atttctctttagctctgctacaatggcttccacattatccacaattgcccttcgttctccctctcctctttctcaatcaaccgtaagctccacgcacgcttcaatttcattccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaactcgtagagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79922" stop="81083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80222" g_stop="80783" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E462341" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80222" e_stop="80783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTT</genome_strand>
        <mrna_strand>ATTTCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTGCCCTTCGTTCTCCCTCTCCTCTTTCTCAATCAACCGTAAGCTCCACGCACGCTTCAATTTCATTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTCGTAGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408097" ref_strand="+" ref_description="SGN-E408097 [PPI-10-C11]">
      <seq>ttcctctttagctctgctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcatcaatttccttccctaccaaaaccctagaactccccattggttcgcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagcttggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaaagacggatttgacgtagtcatcgatgaagtgcccgagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79924" stop="80944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80223" g_stop="80639" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E408097" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80223" e_stop="80639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAG-AAGACGGAATTTGATGTAGTCATCGATGAAGTG-CCGAGT</genome_strand>
        <mrna_strand>TTCCTCTTTAGCTCTGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGTTCGCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTTGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAAGACGG-ATTTGACGTAGTCATCGATGAAGTGCCCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265877" ref_strand="+" ref_description="SGN-E265877 [cLEI-11-H23]">
      <seq>tctctttagctcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79925" stop="81036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80225" g_stop="80736" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E265877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80225" e_stop="80736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA</genome_strand>
        <mrna_strand>TCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732811" ref_strand="+" ref_description="SGN-E732811 [LB03AH03]">
      <seq>ctttagcgcagctacaatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79928" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80228" g_stop="80915" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="709"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E732811" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80228" e_stop="80915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</genome_strand>
        <mrna_strand>CTTTAGCGCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723938" ref_strand="+" ref_description="SGN-E723938 [FC22CA11]">
      <seq>aatggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctaaaacttcccattcgcacatcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcaaatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctaaaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaaaaaacaacttgaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79943" stop="81092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80243" g_stop="80792" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E723938" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80243" e_stop="80792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCAC-TCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCT</genome_strand>
        <mrna_strand>AATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAAAACTTCCCATTCGCACATCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAAATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAAAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAAAAACAACTTGAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407643" ref_strand="+" ref_description="SGN-E407643 [PPI-8-E1]">
      <seq>ggcttccacattatccacaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaattaagggaggggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattggctaaatgagtttacggtaaatgttcattcttatttgggttttgattatctgggcaaattactggtagtttttttgtggtttttgtaagagaattcaggttgtagaatagttgtccccaattttctaaaatcaagattattcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79946" stop="85350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80246" g_stop="80314" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80315" i_stop="84411" i_length="4097">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84412" g_stop="85042" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="700" r_length="631" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E407643" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80246" e_stop="80314"/>
          <exon e_start="84412" e_stop="85042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTGTGTTTGTTGTTTGATGACTTGGTCTCACAATCAGGCAGGCGAGCAGACATAATCTTAGCTTGAGCCTACTGTCGCACACCTCTGTTGAGTGTTAATAATGTGAGTGATATAACTAATTGGGATCACTCTATGCTTGAATTATGATCCAAAAATTATTGGTTCTTATGTTGATCAATCTCAACAATATGCAACTCCACTGTATAATATGAGTTAGGTTATCTCATTTTGGTCATGAAAAATAAGCTGATAACTGAAATGCAATCAACTGTTGAACCATGTGACCTCTCTGTACTCTGCTATAGTGCAAAGATCACAGGGCTTAAACCAGCAATTGAGGGCTATGGATTTCGCATTGACATTGAGTAGTTAAGCACAGCCATCAGAGGCTGTTGTTGTCAGATTCCAGTCTTGTACATGCTTGGCTGCATCAATTGATGCTTTTGCATACTATATTGTTGAAGAAGCATTTCCCCTACAACATTTTACACATCAATTCTAGTTGTGTCGTATTATTTTAGCTTTTACTTAATTCGGAATACTTAGCCTGAAATGGCTTACAAATATGTGTTGTCTTTTAGGGGATATATCAGTATCCCCAGAATGCTCTCTCATGTCCATAATGCTTATGACACTGGTAGCTGTAATAGGAGAAAAAGGCAGCTTCAAAATGTCTGTGAAGAAAGTAGTGAATTCATGCATTTTTTGTTTCAACGTCAGGCAGGCATTTTGAATGCTAAATCTCATACTTGAAAAGGAAAATTCTAGTTTGAAGTGAATAGCACTTAAACCTGTGACCAATTGACCATTTCAATTTGGAACTTGGTATAAATACAATACTATCTGCAAGATAGTTCTTTTTCTCTAGTAAAGATGATAGTTTAAGGATGGGAATATATCTCATTTGCTCCAAGAAGATTTTGCAGCCCCCTTTCATTAGGAAATCATTAAGGTTTTACGATAAATATAAATAGTACTCCCTCCGTCCGGTATTATTTGTCATGATTTTTATTTTTAGAGTCAAACCACAAAAATTTTGACTAACAATTTAAGATGTATTTTGCGATCATATTAATATGCAAAAAATTATAATTTGTAGTATTTTTTAATATAGTTTTAAAATATCTAATTTTTTGGTTCAAACTATCGAATTGTGATCTTATTTACCTTTAAAAATTAGTCAAATTAATTTTCGATAAATACAATATGACAAACAATTTCGAATAAATAATTCTGAACGGAGAAAGTAGTCTAGAACTATGAGTACACGAATATCGAAGCAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGCTATTTTTTTTTATATTTTGGAACACCACTAAAAATATATATATCTAATTTGGTACTTAGGATCGAAAGAAAAATATATATTTAAATCTTCTTAATTTCATAGATATGTAAATTAGTGAGGTTAACGTTCTTCCAGCATCTCATTACATAAAGATGAGCCCCACCCACCCAATTAGAGGCTCCGAGGAATTAATAAATCAACAGAAAAAGCTCAAAAATATCTTAAATTATTTTTGAAATAGTTTATACTTACTTTTAAATTATATTTCGATTTAAAATTATCCTTCCCATCATACTATTGATCAAAAATATCCTTCTTGTTAACTGAAAATATTAAATGTCACATGTCATGCCACGTACATACCACAATTTCATTCATTCCACATAGACTAATATTCTTAATCCCACTTTTTTCCCTCATTTCTCAATTTCCATTTGAAACCAATTTCACGCCCCCATTTCCCCTCATTTCTCCATTTCCCTTAGAAACGATTTCATTCATTTCCCAAAAATTTCACTCATTTCTCCATTTCCCTTAGATGGATTAAAACTTATTTGAAATCATTTATGTTGGAGAGTCCTAACTAGAAAGTAAACTCTGTAATGGAAAAAGAAGTTAGTTTTCAGTATTTTCACACTGTAAATGGATAGATGATAACAGAATTTCAACTGAAAATAGAAGTAAAACCTAGAGATTTAATGTCTTACTTGACTCTAGGAAACTTGATTATTACTTCTCAGGAAAATTTTAAAAATATGAGAAATTTTGTGAGGAATTTTCATGAATTGCACTCTACATAGTTAGTTATAACTATTCTAGACAGTTACATCAATGTAAATGAATTATCCAGTAACATTATTCACTATAGTTTGAAAAACAAACACTTGCCATTACTCAATCCACTAAGCCATGAAATTGAACATGTAAACAGAAATAAGCTAAAACTAAGACAATGTTACTGCAATGAGTGGAAAATTAGGGAGATGGATTAAATCATTTATAAGGGAATTAGAGAAATGAGGGGGAAAGGGGTGGGTGAAATGGCGGCTTCAAATGGAAATTGAGTAATGAGGGGAAAAATTTGGGATCAGGAGTATTCGTCTATATGGAAATGAATGAAATTATTGTGCTTACGTGCATGTCGGTATTTATCAGTTTCAGTTAATAAGAAGGGTATTTTTGATTCAATAGTATAATCAAAAGGATAGTTTTGAATCGAAATATAGTTTAAGAATATATATGAGCTATTTCAAATAGTTTAAAGGTATTGTTAAGCCTTTTTCGTAAATCAAATAATATTCAACGGAGAGCCTTAGTGATTACTTTCTCCGTTTAAAAAAGAATGTCCATATTTCTTTTTTAGTTTGTTTAAAAAAGAATTACCCCTTTCCTTCTTTGACAATAATTTAACTTTAACTTTTCACATGTCATGTTTAAGAACACAAGATTAAAGGACACTTTGATACATTTACATAACTTTAATTTAGACACAAAATTAATAAAATCTTTTTTTTTTCTTAAATTCTATTCCATATCAAACTATATCATATTTTTAAAATGGAGGATGTAATATATATACTATTAATTTTTTTTAAAACAGGTAAATAAGAGAGAGAAAATCTCTCAAATTCACATTCTTGTGGAGTTTCCCAAGGTTGGATTTTTTAAAGAAATTATTACTACAGCGAAATAGTAATATTAGTGTTTATTATAAATATTAAATTATTTTAGTTTAGCTTAGTTTATATCTCTAAAAAGTAAAAACCTACGAAGAGCCTGTTTGAATTGGTGTTTAGTTTGACTTATTTTTTTTTAATCATTTTAGTTTAATTTAGCTCGTTAAAAATAAGTGAATCAGGCCCTCACTAAATTTCTTTTTTCTCCAATAAAATTTCAATAATAATGGATTAAAATAAAAAATAAAAAAATGAGACCCTATATATAACCTTATCAACACAATATTCATTCCTCTTATCCTATTTTTTCTTGCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGA-GGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACT-G-AGTTTTTTT-TTGTTTTTGTAAGAGCATTCAGCTATTAG-ATAGTTGTACCCAATTTTCTAAAATCA</genome_strand>
        <mrna_strand>GGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTAAGGGAGGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGGCTAAATGAGTTTACGGTAAATGTTCATTCTTA-T--TTGGGTTTTGATT-ATCTGGG-CAAATTACTGGTAGTTTTTTTGTGGTTTTTGTAAGAGAATTCAGGTTGTAGAATAGTTGTCCCCAATTTTCTAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597509" ref_strand="+" ref_description="SGN-E597509 [67378]">
      <seq>gctgaataaacttgattttagaaaattgggtacaagtatatctaacaactgaattctcttgcgaaaatacaaataagattgaacatttaccacaaatttatttaagcaatagaaactttagcaccagcttcttcaagctgtttcttagcatcttcagcctcatccttggaaacaccctccttaaatttcttaggcaatccttcaatcaattccttcgcctctttcaaagccaaacttgttaaagccctaacagccttaatagttgcaattctagcattactcggtacttcatcgatgactacatcaaattccgttttctcctcaaccacaggtggagcatctgcggctgcgccaccaggggcagcgacgacggcagcgggagcgaaggatgcggctgaaactccaagcttatcctgaaggtactcgacaagtttctgggcatcggcgagggttaagttggagatttcatctccgagctggactaccttctccggtgcttcgacggcggcgagagggcggacgaaagtggctcggcggtggtggagtttgggagtgcgaatggggagttctagggtttgggtagggaatgaaattgaagcgtgcgtggagcttacggttgattgagaaataggagagggagaacgaagggcaattgtggataatgtggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="-" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="81216" stop="79948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80917" g_stop="80248" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="-" ref_id="SGN-E597509" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80917" e_stop="80248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAG</genome_strand>
        <mrna_strand>GCTGAATAAACTTGATTTTAGAAAATTGGGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAATACAAATAAGATTGAACATTTACCACAAATTTATTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTCGCCTCTTTCAAAGCCAAACTTGTTAAAGCCCTAACAGCCTTAATAGTTGCAATTCTAGCATTACTCGGTACTTCATCGATGACTACATCAAATTCCGTTTTCTCCTCAACCACAGGTGGAGCATCTGCGGCTGCGCCACCAGGGGCAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACAAGTTTCTGGGCATCGGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAAAGTGGCTCGGCGGTGGTGGAGTTTGGGAGTGCGAATGGGGAGTTCTAGGGTTTGGGTAGGGAATGAAATTGAAGCGTGCGTGGAGCTTACGGTTGATTGAGAAATAGGAGAGGGAGAACGAAGGGCAATTGTGGATAATGTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296038" ref_strand="+" ref_description="SGN-E296038 [cLET-27-J3]">
      <seq>acaattacccttcgttctccctctcctatttctccagcaaccgcaagctccacgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="79962" stop="80942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80262" g_stop="80642" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E296038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80262" e_stop="80642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAAT</genome_strand>
        <mrna_strand>ACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298451" ref_strand="+" ref_description="SGN-E298451 [cLET-41-G1]">
      <seq>cgcacgcttcaatttccttccccaccaaaaccctagaacttcccattcgcactcccaaactgtaccaccgccgggcaactctcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaatgctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80014" stop="81097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80314" g_stop="80797" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E298451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80314" e_stop="80797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGC</genome_strand>
        <mrna_strand>CGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAATGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572916" ref_strand="+" ref_description="SGN-E572916 [32145]">
      <seq>catttcattccctaccaaaaccctagaactccccattcgcactcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaacttgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaaaacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcaactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80025" stop="81177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80324" g_stop="80877" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E572916" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80324" e_stop="80877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGA</genome_strand>
        <mrna_strand>CATTTCATTCCCTACCAAAACCCTAGAACTCCCCATTCGCACTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTTGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAAACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCAACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402214" ref_strand="+" ref_description="SGN-E402214 [PPC-7-G11]">
      <seq>cgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaactcgtagagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctttttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80082" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80382" g_stop="80940" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E402214" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80382" e_stop="80940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGAT</genome_strand>
        <mrna_strand>CGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTCGTAGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTTTTTGCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616320" ref_strand="+" ref_description="SGN-E616320 [66128]">
      <seq>cactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgccgatgcccagaaacttgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaaaacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcaactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcaatcttatttgtattttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctctttgcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80091" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80390" g_stop="80936" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E616320" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80390" e_stop="80936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTG</genome_strand>
        <mrna_strand>CACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCCGATGCCCAGAAACTTGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAAACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCAACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCAATCTTATTTGTATTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTCTTTGCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284929" ref_strand="+" ref_description="SGN-E284929 [cLER-19-H14]">
      <seq>accggagaaggtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80123" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80423" g_stop="80942" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E284929" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80423" e_stop="80942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTG</genome_strand>
        <mrna_strand>ACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581559" ref_strand="+" ref_description="SGN-E581559 [6729]">
      <seq>ggtagtccagctcggagatgaaatctccaacttaaccctcgctgacgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80132" stop="80930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80432" g_stop="80630" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E581559" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80432" e_stop="80630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>GGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGACGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295393" ref_strand="-" ref_description="SGN-E295393 [cLET-23-D17]">
      <seq>gtagtccagctcggagatgaaatctccaacttaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80133" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80433" g_stop="80928" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="518"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E295393" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295393" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80433" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>GTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279614" ref_strand="-" ref_description="SGN-E279614 [cLER-5-C19]">
      <seq>gatgcccagaaactcgtcgagtaccttcaggataagcttggagtttcagccgcatccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaaaaaaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80175" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80475" g_stop="80931" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="476"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E279614" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279614" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80475" e_stop="80931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>GATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615725" ref_strand="+" ref_description="SGN-E615725 [65527]">
      <seq>gataagcttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcactcttatttgtgttttcgcaagagaattcagttgttagatatacttgtacccaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80205" stop="81197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80505" g_stop="80897" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E615725" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80505" e_stop="80897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTC</genome_strand>
        <mrna_strand>GATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCACTCTTATTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615321" ref_strand="+" ref_description="SGN-E615321 [65118]">
      <seq>cttggagtttcagccgcatccttcgctccggctgccgttgtcgctgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaggcgaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagcttgaagaagctggtgctaaagtttctattgcttaaataaatttgtggtaaatgttcactcttatttgtgttttcgcaagagaattcagttgttagatatacttgtacccaattttctaaaatcaagtttattcagccctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80211" stop="81223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80511" g_stop="80934" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E615321" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80511" e_stop="80934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATT</genome_strand>
        <mrna_strand>CTTGGAGTTTCAGCCGCATCCTTCGCTCCGGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAGGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATAAATTTGTGGTAAATGTTCACTCTTATTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACCCAATTTTCTAAAATCAAGTTTATTCAGCCCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217433" ref_strand="+" ref_description="SGN-E217433 [cLEL-21-N3](-)">
      <seq>catccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80227" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80527" g_stop="80931" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E217433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80527" e_stop="80931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</genome_strand>
        <mrna_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281367" ref_strand="-" ref_description="SGN-E281367 [cLEL-1-L18]">
      <seq>catccttcgctcccgctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgagtagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaagtagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaagtttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80227" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80527" g_stop="80928" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="422"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E281367" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281367" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80527" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>CATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGTAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGTAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAAGTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712389" ref_strand="+" ref_description="SGN-E712389 [FB04CH05]">
      <seq>ctgccgtcgtcgcttcccctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80242" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80542" g_stop="80928" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="413"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E712389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80542" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>CTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552131" ref_strand="+" ref_description="SGN-E552131 [cTSB-2-O9]">
      <seq>gtcgcttcccctggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80264" stop="81217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80550" g_stop="80915" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E552131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80550" e_stop="80915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</genome_strand>
        <mrna_strand>GTCGCTTCCCC---TGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552199" ref_strand="+" ref_description="SGN-E552199 [cTSB-3-C23]">
      <seq>gtcgcttcccctggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80264" stop="81217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80550" g_stop="80915" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E552199" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80550" e_stop="80915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</genome_strand>
        <mrna_strand>GTCGCTTCCCC---TGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353406" ref_strand="+" ref_description="SGN-E353406 [cTOS-15-P13]">
      <seq>cctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80259" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80559" g_stop="80924" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E353406" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80559" e_stop="80924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTT</genome_strand>
        <mrna_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354526" ref_strand="+" ref_description="SGN-E354526 [cTOS-17-M17]">
      <seq>cctggtggcgcagccgcagatgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaattttctcaaatcaagttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80259" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80559" g_stop="80924" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E354526" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80559" e_stop="80924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTT</genome_strand>
        <mrna_strand>CCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281366" ref_strand="-" ref_description="SGN-E281366 [cLEL-1-L16]">
      <seq>tgctccagctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtgccgagtaatgctagaattgcgaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacaacttgaagaagctggtgctaaagtttctattgcttaaacaaatttgtggtaaatgttcgttcttagttgtgttttcgcaagagaattcagttgttagatatacttgtactcaagtttctcaaatcaagttttttcagtcgtctttgcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80279" stop="81229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80579" g_stop="80928" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="370"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E281366" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281366" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80579" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</genome_strand>
        <mrna_strand>TGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAAGTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733193" ref_strand="+" ref_description="SGN-E733193 [LB04AH06]">
      <seq>gctccctctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttaaactggaaaaaattactgagtttttttttgtttttgtaaaaccattcacctattaaaaagttgtacccaattttctaaaatcaatatttatgattctgcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84005" stop="85362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84305" g_stop="85071" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E733193" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84305" e_stop="85071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAAT</genome_strand>
        <mrna_strand>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTAAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAAACCATTCACCTATTAAAAAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734484" ref_strand="+" ref_description="SGN-E734484 [LB12DB09]">
      <seq>ctccctctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattactgagtttttttttgtttttgaaaaagcattcacctattaaatagttgaacccatttttctaaaatcaatatttatgattctgctttnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84006" stop="85360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84306" g_stop="85058" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="774"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E734484" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84306" e_stop="85058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGC</genome_strand>
        <mrna_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAATAGTTGAACCCATTTTTCTAAAATCAATATTTATGATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738892" ref_strand="+" ref_description="SGN-E738892 [LC15BD02]">
      <seq>ctccctcttttatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattacggagtttttttttgtttttgtaaaaccattcacctattaaatagttgtacccaattttcaaaaatcaatatttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84006" stop="85354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84306" g_stop="85054" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E738892" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84306" e_stop="85054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATT</genome_strand>
        <mrna_strand>CTCCCTCTTTTATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACGGAGTTTTTTTTTGTTTTTGTAAAACCATTCACCTATTAAATAGTTGTACCCAATTTTCAAAAATCAATATTTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727873" ref_strand="+" ref_description="SGN-E727873 [LA16AA09]">
      <seq>ctttcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattccttttttttttttttaaactggaaaaaattactgagtttttttttgtttttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84012" stop="85298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84312" g_stop="84999" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E727873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84312" e_stop="84999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC-TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAG</genome_strand>
        <mrna_strand>CTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTAAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733416" ref_strand="+" ref_description="SGN-E733416 [LB04DG02]">
      <seq>cccatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactggaaaaaattactgagtttttttttgtttttgaaaaagcattcacctattaaatagttgtacccatttttcaaaaatcaatatttatgattcggcaaaattttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84016" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84314" g_stop="85066" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="755" polyA_stop="769"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E733416" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84314" e_stop="85066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTT</genome_strand>
        <mrna_strand>CCCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGAAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAATAGTTGTACCCATTTTTCAAAAATCAATATTTATGATTCGGCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266872" ref_strand="+" ref_description="SGN-E266872 [cLEI-7-P16]">
      <seq>tcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84015" stop="85146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84315" g_stop="84846" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E266872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84315" e_stop="84846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTC</genome_strand>
        <mrna_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266345" ref_strand="+" ref_description="SGN-E266345 [cLEI-3-G7]">
      <seq>tcatttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttgcaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcaaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaacgctgttagggctttaacaagtttggcattgaaagacgctaaggaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84015" stop="85111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84315" g_stop="84811" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E266345" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84315" e_stop="84811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATT</genome_strand>
        <mrna_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTGCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCAAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAACGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGACGCTAAGGAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280408" ref_strand="+" ref_description="SGN-E280408 [cLER-1-N15]">
      <seq>tcattttctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgntgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84015" stop="85027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84315" g_stop="84727" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E280408" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84315" e_stop="84727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>TCATTTTCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGNTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734200" ref_strand="+" ref_description="SGN-E734200 [LB12AB11]">
      <seq>atttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgaaaaagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattcggcataattttgaaattgttattgggggttccaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84017" stop="85391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84317" g_stop="85078" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="790"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E734200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84317" e_stop="85078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATT</genome_strand>
        <mrna_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCATAATTTTGAAATTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390621" ref_strand="+" ref_description="SGN-E390621 [TUS-47-G10]">
      <seq>atttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggaaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84017" stop="85287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84317" g_stop="84987" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E390621" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84317" e_stop="84987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTT</genome_strand>
        <mrna_strand>ATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGAAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283645" ref_strand="+" ref_description="SGN-E283645 [cLES-1-D5]">
      <seq>tttcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84018" stop="85041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84318" g_stop="84741" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E283645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84318" e_stop="84741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGC</genome_strand>
        <mrna_strand>TTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289045" ref_strand="+" ref_description="SGN-E289045 [cLES-17-P16]">
      <seq>tcctctcctcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggaganagtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaaatttggcattgaaagaggctaaggaattgattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84020" stop="85114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84320" g_stop="84814" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E289045" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84320" e_stop="84814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAA</genome_strand>
        <mrna_strand>TCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGANAGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAATTTGGCATTGAAAGAGGCTAAGGAATTGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738584" ref_strand="+" ref_description="SGN-E738584 [LC14AH04]">
      <seq>ctcaatttctcttttgctctgctacaatgggttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttggaacggggaaaaattacggagtttttttttgtttttgaaaaagcattcacctattaaaaagttgtacccaattttcaaaaatcaatatttatgattcggcaaaattttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84027" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84327" g_stop="85066" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="743" polyA_stop="753"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E738584" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84327" e_stop="85066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTT-GAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTT</genome_strand>
        <mrna_strand>CTCAATTTCTCTTTTGCTCTGCTACAATGGGTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGGAACGGGGAAAAATTACGGAGTTTTTTTTTGTTTTTGAAAAAGCATTCACCTATTAAAAAGTTGTACCCAATTTTCAAAAATCAATATTTATGATTCGGCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347246" ref_strand="+" ref_description="SGN-E347246 [cTOF-25-N5]">
      <seq>tcaatttctcttttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattctaattcccttttttttttttgaactgggaaaaatactgagttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84028" stop="85286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84328" g_stop="84986" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E347246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84328" e_stop="84986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTT</genome_strand>
        <mrna_strand>TCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTAATTCCCTTTTTTTTTTTTGAACTGGGAAAAA-TACTGAGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290464" ref_strand="+" ref_description="SGN-E290464 [cLES-20-J22]">
      <seq>tttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttttgaactgggaaaaattactgagtttttttttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84039" stop="85294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84339" g_stop="84994" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E290464" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84339" e_stop="84994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC--TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTT</genome_strand>
        <mrna_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278811" ref_strand="+" ref_description="SGN-E278811 [cLER-2-J7]">
      <seq>tttgctctgctacaatggcttccacattatccactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84039" stop="85027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84339" g_stop="84727" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E278811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84339" e_stop="84727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</genome_strand>
        <mrna_strand>TTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716386" ref_strand="+" ref_description="SGN-E716386 [FB16DF06]">
      <seq>cactattgccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaacggggaaaaattactgagtttttttttgtttttgaaaaagcattcagctattaaatagtggtacccaattttctaaaatcaatatttatgattcggcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84070" stop="85362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84370" g_stop="85061" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E716386" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84370" e_stop="85061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATA</genome_strand>
        <mrna_strand>CACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACGGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGAAAAAGCATTCAGCTATTAAATAGTGGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738950" ref_strand="+" ref_description="SGN-E738950 [LC15CC10]">
      <seq>gccctttgttcaccttctcacatttccccctccacacacgcttcaatttctttccccaccaaaaccctacaactccccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaacggggaaaaattacggagttttttttgtttttgtaaaagcattcacctattaaatagttgtacccaattttctaaaatcaatatttatgattcggcaaaattttgtaaaaaaaaaaaaaaaaaaaaaacccccggggggggggcggggacccaattccccccaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84077" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84377" g_stop="85069" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E738950" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84377" e_stop="85069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>GCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACGGGGAAAAATTACGGAG-TTTTTTTTGTTTTTGTAAAAGCATTCACCTATTAAATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCGGCAAAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410418" ref_strand="+" ref_description="SGN-E410418 [PPI-16-P24]">
      <seq>ccgcaagctccacgtacgcatcaatttccttccctaccaaaaccctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80002" stop="85343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84399" g_stop="85044" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E410418" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84399" e_stop="85044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAAT</genome_strand>
        <mrna_strand>CCGCAAGCTCCACGTACGCATCAATTTCCTTCCCTACCAAAACCCTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390620" ref_strand="+" ref_description="SGN-E390620 [TUS-47-G10](-)">
      <seq>ccctccacacacgcttcaatttctttccccaccaaaaccgtacaactctccattcgcacttccaaactccaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84104" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84404" g_stop="85069" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="679"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E390620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84404" e_stop="85069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>CCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCGTACAACTCTCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408596" ref_strand="+" ref_description="SGN-E408596 [PPI-11-H17]">
      <seq>ctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84143" stop="85345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84443" g_stop="85051" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E408596" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84443" e_stop="85051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATG</genome_strand>
        <mrna_strand>CTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407668" ref_strand="+" ref_description="SGN-E407668 [PPI-8-I17]">
      <seq>ctagaactccccattggctctcccaaactccaccaccgccgagccactttcgtccgccctctcgccgccgtcgaagcaccggagaaggtagtacagctcggagatgaaatctccactctaactctcgctgatgcgcagaaactcgttgagtaccttcaggataagcttggtgtttcggccgcatccttcgctcctgctgcggtcgtcgccgctcctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttacggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagttttttgtgtttttgtaagagaattcagttgttagatagttgtacccaaatttctaaaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84143" stop="85345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84443" g_stop="85050" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E407668" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84443" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTG-AGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTAT</genome_strand>
        <mrna_strand>CTAGAACTCCCCATTGGCTCTCCCAAACTCCACCACCGCCGAGCCACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTACAGCTCGGAGATGAAATCTCCACTCTAACTCTCGCTGATGCGCAGAAACTCGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCGGCCGCATCCTTCGCTCCTGCTGCGGTCGTCGCCGCTCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTACGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAAATTTCTAAAATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289331" ref_strand="+" ref_description="SGN-E289331 [cLES-18-F4]">
      <seq>gcacttccaaactgcaccaccgccgagccacttttgtccgccctctcgccgccgtcgaagcaccggagaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttggggtgaatgttcattcttattccttttttttttttttttgaactgggaaaaattactgagttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84159" stop="85258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84459" g_stop="84988" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E289331" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84459" e_stop="84988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC---TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTT</genome_strand>
        <mrna_strand>GCACTTCCAAACTGCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGGGGTGAATGTTCATTCTTATTCCTTTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614123" ref_strand="+" ref_description="SGN-E614123 [63906]">
      <seq>cactttcgtccgccctctcgccgccgtcgaagcacctgagaaggtagtacagctcggagatgaaatatccactctaaccctcgctgatgcccagaaactcgtcgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgtcgtcgccgcccctggtggcgcagccgcagatgctccacctgtggttgaggagaagacggaatttgatgtagtcatcgatgaagtaccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagcgaaggaattgattgaaggattgcctaagaaatttacaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgaatttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagtttttgtgtttttgtaagagaattcagttgttagatagttgtacccaattttctaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80091" stop="85345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84487" g_stop="85046" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E614123" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84487" e_stop="85046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTA-AGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATAT</genome_strand>
        <mrna_strand>CACTTTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCTGAGAAGGTAGTACAGCTCGGAGATGAAATATCCACTCTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTCGTCGCCGCCCCTGGTGGCGCAGCCGCAGATGCTCCACCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTACCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCGAAGGAATTGATTGAAGGATTGCCTAAGAAATTTACAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAATTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTGTGTTTTTGTAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280479" ref_strand="+" ref_description="SGN-E280479 [cLER-1-C19](-)">
      <seq>gaaggtagtccagctcggggatgaaatctccactttaaccctagctgacgcccagaaactggttgagtaccttcaggataagcttggtgtttcagccgcatccttcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagccggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattccttttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84226" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84526" g_stop="85069" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="556"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E280479" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84526" e_stop="85069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCC-TTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>GAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGCCGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293512" ref_strand="+" ref_description="SGN-E293512 [cLET-15-H16]">
      <seq>tcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagcttttagatagttgtacccaattttctaaaatcaataattatgattctgcttattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84330" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84630" g_stop="85069" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E293512" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84630" e_stop="85069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTTTTAGATAGTTGTACCCAATTTTCTAAAATCAATAATTATGATTCTGC-TTATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293515" ref_strand="+" ref_description="SGN-E293515 [cLET-15-J16]">
      <seq>tcgctcctgctgccgttgtcgctgcccctggtggcgcagccgcagatgctccagctgtggttgaagagaagacggaatttgacgtagtcatcgatgaagtgccgagtaatgctagaattgctaccattaaggctgttagggctttaacaagtttggcattgaaagaggctaaggaattgattgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctcgaagaagctggtgctaaagtctctattgcttaaatcaatttgtggtaaatgttcattcttattcctttttttttttttgaactgggaaaaattactgagtttttttttgtttttgtaagagcattcagctattagatagttgtacccaattttctaaaatcaatatttatgattctgcataattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="84330" stop="85370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84630" g_stop="85069" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="450"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E293515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84630" e_stop="85069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</genome_strand>
        <mrna_strand>TCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616179" ref_strand="+" ref_description="SGN-E616179 [65986]">
      <seq>cgatgaagtgccgagtaatgctagaattgcgactattaaggctgttagggctttaacaagtttggctttgaaagaagctaaggaattgatcgaaggattgcctaagaaatttaaggagggtgtttccaaggatgaggctgaagatgctaagaaacagctagaagaagctggtgctaaagtttctattgcttaaatgagtttgtggtaaatgttcattcttatttggttttgattatctgggcaaattactgtaagtttttgtgtttttgcaagagaattcagttgttagatagttgtacccaattttctaaaatctagatttttcacccctttttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="80324" stop="85352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84721" g_stop="85048" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="357"/>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E616179" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84721" e_stop="85048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTT</genome_strand>
        <mrna_strand>CGATGAAGTGCCGAGTAATGCTAGAATTGCGACTATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCTTTGAAAGAAGCTAAGGAATTGATCGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTAGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAATGAGTTTGTGGTAAATGTTCATTCTTA----TTTGGTTTTGATT-ATCTGGG-CAAATTACTGTAAGTTTTTGTGTTTTTGCAAGAGAATTCAGTTGTTAGATAGTTGTACCCAATTTTCTAAAATCTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431618" ref_strand="+" ref_description="SGN-E431618 [STM-55-D12]">
      <seq>cttgaggacaagaaggaagatcaagtcattgatgcaaatgacttcagtatacccattgaggttcctattcagggtccatcagaagaagaaattcctaattctggatcttcaaagtttcctatgactgcttgcgacaagatttatcagaagaggaagcagaaaagtgtggctgaacttatgggagagaacgccaagcccaaaggtaagaagacaactgaagacgattctacaccttcatctgtagaaacatccgagaagaaaaggaagaagtctggtgagaaagctaaaggtcacactggcagctcgaagagtgttgatgaaaaaattggtaagagggtcagcaagaagtctggtgacagtgacttggtgaaaaacaagaaacttagtggtttcatttcctgagcgtgatgaacttggcgaccagcaagacatgaatgcgggccctctatcgagggaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="88295" stop="89105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88595" g_stop="89049" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E431618" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88595" e_stop="89049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAG-A--AATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGT-GTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGAC---AATGCGGGCCCTTTATCAAGGGAAAGAAA</genome_strand>
        <mrna_strand>CTTGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGTATACCCATTGAGGTTCCTATTCAGGGTCCATCAGAAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCTTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCATCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCACACTGGCAGCTCGAAGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAGCAAGAAGTCTGGTGACAGTGACTTGGTGAAAAACAAGAAACTTAGTGGTTTCATTTCCTGAGCGTGATGAACTTGGCGACCAGCAAGACATGAATGCGGGCCCTCTATCGAGGGAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464703" ref_strand="+" ref_description="SGN-E464703 [cPRO-18-H2]">
      <seq>cttgaggacaagaaggaagatcaagtcattgatgcaaatgacttcagtatacccattgaggttcctattcagggtccatcagaagaagaaattcctaattctggatcttcaaagtttcctatgactgcttgcgacaagatttatcagaagaggaagcagaaaagtgtggctgaacttatgggagagaacgccaagcccaaaggtaagaagacaactgaagacgattctacaccttcatctgtagaaacatccgagaagaaaaggaagaagtctggtgagaaagctaaaggtcacactggcagctcgaagagtgttgatgaaaaaattggtaagagggtcagcaagaagtctggtgacagtgacttggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A13-uXr5y/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0031A13.1" temp_strand="+" temp_description="C02HBa0031A13.1  AC215853.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A13 sequenced_by:kribb upload_account_name:korea">
        <position start="88295" stop="89105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88595" g_stop="88963" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A13.1" gen_strand="+" ref_id="SGN-E464703" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88595" e_stop="88963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAG-A--AATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAA</genome_strand>
        <mrna_strand>CTTGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGTATACCCATTGAGGTTCCTATTCAGGGTCCATCAGAAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCTTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCATCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCACACTGGCAGCTCGAAGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAGCAAGAAGTCTGGTGACAGTGACTTGGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>204</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16057" PGL_stop="19948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16136" e_stop="16214"/>
            <exon e_start="17863" e_stop="18338"/>
            <exon e_start="19215" e_stop="19459"/>
            <exon e_start="19555" e_stop="19948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.473" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16136" e_stop="16214" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16215" i_stop="17862" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17863" e_stop="18338" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19215" e_stop="19459" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.473">
            <gDNA_intron_boundary i_start="19460" i_stop="19554" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="19555" e_stop="19948" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16214"/>
              <exon start="17863" stop="18319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16214"/>
              <exon start="17863" stop="18182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16137" stop="16214"/>
              <exon start="17863" stop="18338"/>
              <exon start="19215" stop="19459"/>
              <exon start="19555" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19333" stop="19459"/>
              <exon start="19555" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCT : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG : ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</gDNA_template>
            <first_frame> K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  S  I  G  I   : Y  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P  *  *  V  L  W  E  S  R  F  S  I  L  R  P  S  S  T  L  A  C  H  S  F  C  W  Q  N  V  E  T  R  W  G  I  V  L  L  L  S  M  H  *  A  S  T  A  L  M  *  S  T  Q  I  T  V  Y  R :   Y  K  N  I  *  S  T  S  S  H  L  *  S  *  T  K  D  T  R  E  L  P  S  K  *  R  R  F  Y  *  A  S  S  T  E  E  E  A  G  F  C  *  R  K  Q  W  D  *  M  L  L  F  S  C  G  G  D  *  A  F  W  *  G  K  R  S  Y  R  L  F  D  I  C  Q  T  Q  M  F  C  V  M  C  F  D  E  Y  P  V  L  V  V  E  Y  T  V  R  S  L  D  V  V  L  I  F  L  L  D  S  T  I  R  Y  Q  T  I  L  S  *  D  L  T  K  R  K  R  I  A  S  I  R  R </first_frame>
            <second_frame>  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  S  V  A  S  A  S  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  D  E  F  C  G  R  A  D  S  V  F  L  D  L  P  Q  P  W  L  V  I  P  S  A  G  K  M  L  K  P  D  G  V  L  C  S  F  S  P  C  I  E  Q  V  Q  R  S  C  E  A  L  K  S  Q  F  T   : D  I  R  T  F  E  V  L  L  R  T  Y  E  V  R  Q  K  I  L  E  S  C  P  V  N  E  G  D  S  I  E  R  P  P  R  K  R  R  Q  G  S  A  E  G  S  N  G  T  E  C  S  S  S  P  A  V  V  I  R  P  S  G  E  A  R  G  H  T  G  Y  L  T  F  A  R  L  K  C  F  V  *  C  V  L  M  N  I  Q  F  L  W  S  S  T  L  F  V  L  *  M  L  C  L  F  F  F  L  I  L  Q  L  D  I  R  Q  F  C  L  E  I  *  Q  K  G  K  E  S  L  L  F  G   </second_frame>
            <third_frame>   T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  R  *  H  R  H  L :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L  M  S  F  V  G  E  Q  I  Q  Y  S  *  T  F  L  N  L  G  L  S  F  L  L  L  A  K  C  *  N  Q  M  G  Y  C  A  P  S  L  H  A  L  S  K  Y  S  A  H  V  K  H  S  N  H  S  L  Q  :  I  *  E  H  L  K  Y  F  F  A  P  M  K  L  D  K  R  Y  *  R  A  A  Q  *  M  K  E  I  L  L  S  V  L  H  G  R  G  G  R  V  L  L  K  E  A  M  G  L  N  A  P  L  L  L  R  W  *  L  G  L  L  V  R  Q  E  V  I  Q  A  I  *  H  L  P  D  S  N  V  L  C  N  V  F  *  *  I  S  S  S  C  G  R  V  H  C  S  F  F  R  C  C  A  Y  F  S  S  *  F  Y  N  *  I  S  D  N  F  V  L  R  F  N  K  K  E  K  N  R  F  Y  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16137" stop="16214"/>
                    <exon start="17863" stop="18338"/>
                    <exon start="19215" stop="19459"/>
                    <exon start="19555" stop="19796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPASPDPALLALRTVFRPSSSVASASIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFPDEFCGRADSVFLDLPQPWLVIPSAGKMLKPDGVLCSFSPCIEQVQRSCEALKSQFTDIRTFEVLLRTYEVRQKILESCPVNEGDSIERPPRKRRQGSAEGSNGTECSSSPAVVIRPSGEARGHTGYLTFARLKCFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16133" e_stop="16214"/>
            <exon e_start="17150" e_stop="17158"/>
            <exon e_start="17590" e_stop="17595"/>
            <exon e_start="17863" e_stop="18338"/>
            <exon e_start="19215" e_stop="19459"/>
            <exon e_start="19555" e_stop="19948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.957" e_score="0.902"/>
          <exon-intron don_prob="0.000" acc_prob="0.940" e_score="0.556"/>
          <exon-intron don_prob="0.659" acc_prob="0.992" e_score="0.333"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.473" e_score="0.928"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="16133" e_stop="16214" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.957">
            <gDNA_intron_boundary i_start="16215" i_stop="17149" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="0.556">
            <gDNA_exon_boundary e_start="17150" e_stop="17158" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="17159" i_stop="17589" i_length="431"/>
          </intron>
          <exon e_serial="3" e_score="0.333">
            <gDNA_exon_boundary e_start="17590" e_stop="17595" e_length="6"/>
          </exon>
          <intron i_serial="3" don_prob="0.659" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="17863" e_stop="18338" e_length="476"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="19215" e_stop="19459" e_length="245"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.473">
            <gDNA_intron_boundary i_start="19460" i_stop="19554" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="19555" e_stop="19948" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16133" stop="16214"/>
              <exon start="17150" stop="17158"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18338"/>
              <exon start="19215" stop="19415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16133" stop="16214"/>
              <exon start="17150" stop="17158"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18338"/>
              <exon start="19215" stop="19293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16135" stop="16214"/>
              <exon start="17150" stop="17158"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18338"/>
              <exon start="19215" stop="19449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19333" stop="19459"/>
              <exon start="19555" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCT : GGAACAACC : GAAAAG : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG : ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</gDNA_template>
            <first_frame> A  K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  S  I  G  I   : W  N  N   : R  K   : D  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P  *  *  V  L  W  E  S  R  F  S  I  L  R  P  S  S  T  L  A  C  H  S  F  C  W  Q  N  V  E  T  R  W  G  I  V  L  L  L  S  M  H  *  A  S  T  A  L  M  *  S  T  Q  I  T  V  Y  R :   Y  K  N  I  *  S  T  S  S  H  L  *  S  *  T  K  D  T  R  E  L  P  S  K  *  R  R  F  Y  *  A  S  S  T  E  E  E  A  G  F  C  *  R  K  Q  W  D  *  M  L  L  F  S  C  G  G  D  *  A  F  W  *  G  K  R  S  Y  R  L  F  D  I  C  Q  T  Q  M  F  C  V  M  C  F  D  E  Y  P  V  L  V  V  E  Y  T  V  R  S  L  D  V  V  L  I  F  L  L  D  S  T  I  R  Y  Q  T  I  L  S  *  D  L  T  K  R  K  R  I  A  S  I  R  R </first_frame>
            <second_frame>  R  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  S  V  A  S  A  S  :  G  T  T  :  E  K  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  D  E  F  C  G  R  A  D  S  V  F  L  D  L  P  Q  P  W  L  V  I  P  S  A  G  K  M  L  K  P  D  G  V  L  C  S  F  S  P  C  I  E  Q  V  Q  R  S  C  E  A  L  K  S  Q  F  T   : D  I  R  T  F  E  V  L  L  R  T  Y  E  V  R  Q  K  I  L  E  S  C  P  V  N  E  G  D  S  I  E  R  P  P  R  K  R  R  Q  G  S  A  E  G  S  N  G  T  E  C  S  S  S  P  A  V  V  I  R  P  S  G  E  A  R  G  H  T  G  Y  L  T  F  A  R  L  K  C  F  V  *  C  V  L  M  N  I  Q  F  L  W  S  S  T  L  F  V  L  *  M  L  C  L  F  F  F  L  I  L  Q  L  D  I  R  Q  F  C  L  E  I  *  Q  K  G  K  E  S  L  L  F  G   </second_frame>
            <third_frame>   E  T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  R  *  H  R  H  L :   E  Q  P :   K  R :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L  M  S  F  V  G  E  Q  I  Q  Y  S  *  T  F  L  N  L  G  L  S  F  L  L  L  A  K  C  *  N  Q  M  G  Y  C  A  P  S  L  H  A  L  S  K  Y  S  A  H  V  K  H  S  N  H  S  L  Q  :  I  *  E  H  L  K  Y  F  F  A  P  M  K  L  D  K  R  Y  *  R  A  A  Q  *  M  K  E  I  L  L  S  V  L  H  G  R  G  G  R  V  L  L  K  E  A  M  G  L  N  A  P  L  L  L  R  W  *  L  G  L  L  V  R  Q  E  V  I  Q  A  I  *  H  L  P  D  S  N  V  L  C  N  V  F  *  *  I  S  S  S  C  G  R  V  H  C  S  F  F  R  C  C  A  Y  F  S  S  *  F  Y  N  *  I  S  D  N  F  V  L  R  F  N  K  K  E  K  N  R  F  Y  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16134" stop="16214"/>
                    <exon start="17150" stop="17158"/>
                    <exon start="17590" stop="17595"/>
                    <exon start="17863" stop="18338"/>
                    <exon start="19215" stop="19459"/>
                    <exon start="19555" stop="19796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNPASPDPALLALRTVFRPSSSVASASGTTEKIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFPDEFCGRADSVFLDLPQPWLVIPSAGKMLKPDGVLCSFSPCIEQVQRSCEALKSQFTDIRTFEVLLRTYEVRQKILESCPVNEGDSIERPPRKRRQGSAEGSNGTECSSSPAVVIRPSGEARGHTGYLTFARLKCFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16057" e_stop="16218"/>
            <exon e_start="17590" e_stop="17595"/>
            <exon e_start="17863" e_stop="18338"/>
            <exon e_start="19215" e_stop="19291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.940" e_score="0.883"/>
          <exon-intron don_prob="0.659" acc_prob="0.992" e_score="0.333"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.975"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.883">
            <gDNA_exon_boundary e_start="16057" e_stop="16218" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.940">
            <gDNA_intron_boundary i_start="16219" i_stop="17589" i_length="1371"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="17590" e_stop="17595" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17596" i_stop="17862" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="17863" e_stop="18338" e_length="476"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="18339" i_stop="19214" i_length="876"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="19215" e_stop="19291" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16057" stop="16218"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16066" stop="16218"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16134" stop="16218"/>
              <exon start="17590" stop="17595"/>
              <exon start="17863" stop="18338"/>
              <exon start="19215" stop="19291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCCACCAATACGAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGGCATCTGTAA : GAAAAG : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTG</gDNA_template>
            <first_frame> Q  P  T  N  T  N  N  N  T  L  R  I  P  Q  T  P  P  R  L  L  P  R  T  H  Q  C  E  T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  R  *  H  R  H  L  *  :  E  K  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  </first_frame>
            <second_frame>  N  P  P  I  R  T  T  I  H  Y  V  Y  P  R  P  R  L  V  F  F  L  E  L  T  S  A  K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  S  I  G  I  C  K :   K  R :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L </second_frame>
            <third_frame>   T  H  Q  Y  E  Q  Q  Y  I  T  Y  T  P  D  P  A  S  S  S  S  S  N  S  P  V  R  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  S  V  A  S  A  S  V   : R  K   : D  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17590" stop="17595"/>
                    <exon start="17863" stop="18338"/>
                    <exon start="19215" stop="19290"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23658" PGL_stop="28265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23660" e_stop="24271"/>
            <exon e_start="24942" e_stop="25094"/>
            <exon e_start="25335" e_stop="25420"/>
            <exon e_start="25711" e_stop="25795"/>
            <exon e_start="26053" e_stop="26175"/>
            <exon e_start="26268" e_stop="26345"/>
            <exon e_start="26683" e_stop="26812"/>
            <exon e_start="26950" e_stop="27379"/>
            <exon e_start="28248" e_stop="28265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23660" e_stop="24271" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24942" e_stop="25094" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25335" e_stop="25420" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25711" e_stop="25795" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26053" e_stop="26175" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26268" e_stop="26345" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26683" e_stop="26812" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26950" e_stop="27379" e_length="430"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27380" i_stop="28247" i_length="868"/>
          </intron>
          <exon e_serial="9" e_score="0.833">
            <gDNA_exon_boundary e_start="28248" e_stop="28265" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23660" stop="24271"/>
              <exon start="24942" stop="24980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23667" stop="24271"/>
              <exon start="24942" stop="24961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23721" stop="24104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24271"/>
              <exon start="24942" stop="25008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24271"/>
              <exon start="24942" stop="24978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23750" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23753" stop="24271"/>
              <exon start="24942" stop="24980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23797" stop="24271"/>
              <exon start="24942" stop="25090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24271"/>
              <exon start="24942" stop="25062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24271"/>
              <exon start="24942" stop="25061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23829" stop="24271"/>
              <exon start="24942" stop="25036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24078" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24117" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24968" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26098" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26773" stop="26812"/>
              <exon start="26950" stop="27379"/>
              <exon start="28248" stop="28265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA : TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTT : AAAAAAAAAGGAAAATAA</gDNA_template>
            <first_frame> L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  :  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  V  L  K  Q  E  T  L  S  Y  R  N  I  I  S  I  L  S  S  S  F  L :   K  K  K  E  N   </first_frame>
            <second_frame>  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  N :   L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  M  Y  *  N  R  K  P  F  H  I  G  I  *  F  Q  S  S  L  L  L  F   : *  K  K  R  K  I  </second_frame>
            <third_frame>   V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S   : I  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S  C  I  K  T  G  N  P  F  I  *  E  Y  N  F  N  P  L  F  F  F  F  :  K  K  K  G  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23807" stop="24271"/>
                    <exon start="24942" stop="25094"/>
                    <exon start="25335" stop="25420"/>
                    <exon start="25711" stop="25795"/>
                    <exon start="26053" stop="26175"/>
                    <exon start="26268" stop="26345"/>
                    <exon start="26683" stop="26812"/>
                    <exon start="26950" stop="27026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27034" stop="27285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23660" e_stop="24271"/>
            <exon e_start="24942" e_stop="25094"/>
            <exon e_start="25335" e_stop="25420"/>
            <exon e_start="25711" e_stop="25795"/>
            <exon e_start="26053" e_stop="26175"/>
            <exon e_start="26268" e_stop="26345"/>
            <exon e_start="26683" e_stop="26812"/>
            <exon e_start="26950" e_stop="27317"/>
            <exon e_start="28171" e_stop="28259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.506"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23660" e_stop="24271" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24272" i_stop="24941" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24942" e_stop="25094" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25335" e_stop="25420" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25711" e_stop="25795" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26053" e_stop="26175" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26268" e_stop="26345" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26683" e_stop="26812" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="0.943">
            <gDNA_exon_boundary e_start="26950" e_stop="27317" e_length="368"/>
          </exon>
          <intron i_serial="8" don_prob="0.674" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27318" i_stop="28170" i_length="853"/>
          </intron>
          <exon e_serial="9" e_score="0.506">
            <gDNA_exon_boundary e_start="28171" e_stop="28259" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23660" stop="24271"/>
              <exon start="24942" stop="24980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23667" stop="24271"/>
              <exon start="24942" stop="24961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23721" stop="24104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24271"/>
              <exon start="24942" stop="25008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24271"/>
              <exon start="24942" stop="24978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23750" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23753" stop="24271"/>
              <exon start="24942" stop="24980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23797" stop="24271"/>
              <exon start="24942" stop="25090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24271"/>
              <exon start="24942" stop="25062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24271"/>
              <exon start="24942" stop="25061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23829" stop="24271"/>
              <exon start="24942" stop="25036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24078" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24117" stop="24271"/>
              <exon start="24942" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24968" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25767" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27317"/>
              <exon start="28171" stop="28259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA : TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCAT : ATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</gDNA_template>
            <first_frame> L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  :  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  :  M  E  T  S  W  S  I  R  A  M  T  M  S  I  S  K  Q  I  T  T  N  *  S  E  H  G  K  K  K   </first_frame>
            <second_frame>  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  N :   L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  I :   W  K  L  A  G  A  S  E  P  *  P  C  L  S  L  N  K  S  Q  P  I  S  Q  N  M  E  K  K  R  </second_frame>
            <third_frame>   V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S   : I  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S   : Y  G  N  *  L  E  H  Q  S  H  D  H  V  Y  L  *  T  N  H  N  Q  L  V  R  T  W  K  K  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23807" stop="24271"/>
                    <exon start="24942" stop="25094"/>
                    <exon start="25335" stop="25420"/>
                    <exon start="25711" stop="25795"/>
                    <exon start="26053" stop="26175"/>
                    <exon start="26268" stop="26345"/>
                    <exon start="26683" stop="26812"/>
                    <exon start="26950" stop="27026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27034" stop="27285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23658" e_stop="24260"/>
            <exon e_start="24929" e_stop="25094"/>
            <exon e_start="25335" e_stop="25420"/>
            <exon e_start="25711" e_stop="25795"/>
            <exon e_start="26053" e_stop="26175"/>
            <exon e_start="26268" e_stop="26345"/>
            <exon e_start="26683" e_stop="26812"/>
            <exon e_start="26950" e_stop="27379"/>
            <exon e_start="28248" e_stop="28265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23658" e_stop="24260" e_length="603"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24261" i_stop="24928" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24929" e_stop="25094" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="25095" i_stop="25334" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25335" e_stop="25420" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25421" i_stop="25710" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25711" e_stop="25795" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25796" i_stop="26052" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26053" e_stop="26175" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="26176" i_stop="26267" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26268" e_stop="26345" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26346" i_stop="26682" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26683" e_stop="26812" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="26813" i_stop="26949" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26950" e_stop="27379" e_length="430"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27380" i_stop="28247" i_length="868"/>
          </intron>
          <exon e_serial="9" e_score="0.833">
            <gDNA_exon_boundary e_start="28248" e_stop="28265" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23658" stop="24260"/>
              <exon start="24929" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23658" stop="24260"/>
              <exon start="24929" stop="25094"/>
              <exon start="25335" stop="25402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23721" stop="24104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24968" stop="25094"/>
              <exon start="25335" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="25420"/>
              <exon start="25711" stop="25795"/>
              <exon start="26053" stop="26175"/>
              <exon start="26268" stop="26340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26098" stop="26175"/>
              <exon start="26268" stop="26345"/>
              <exon start="26683" stop="26812"/>
              <exon start="26950" stop="27369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26773" stop="26812"/>
              <exon start="26950" stop="27379"/>
              <exon start="28248" stop="28265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA : ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTT : AAAAAAAAAGGAAAATAA</gDNA_template>
            <first_frame> G  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  :  I  E  F  P  V  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S  C  I  K  T  G  N  P  F  I  *  E  Y  N  F  N  P  L  F  F  F  F  :  K  K  K  G  K  * </first_frame>
            <second_frame>  V  V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q :   L  N  F  Q  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  V  L  K  Q  E  T  L  S  Y  R  N  I  I  S  I  L  S  S  S  F  L :   K  K  K  E  N   </second_frame>
            <third_frame>   L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I   : N  *  I  S  S  L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  M  Y  *  N  R  K  P  F  H  I  G  I  *  F  Q  S  S  L  L  L  F   : *  K  K  R  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24133" stop="24260"/>
                    <exon start="24929" stop="25094"/>
                    <exon start="25335" stop="25420"/>
                    <exon start="25711" stop="25795"/>
                    <exon start="26053" stop="26175"/>
                    <exon start="26268" stop="26345"/>
                    <exon start="26683" stop="26812"/>
                    <exon start="26950" stop="27026"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLQQTGTQGFSISGDCYGLTIWLWDFVNTLYVGISSSSDTKNQLNFQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27034" stop="27285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="23684" e_stop="24392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23684" e_stop="24392" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23684" stop="24392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23721" stop="24104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23735" stop="24005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTAC</gDNA_template>
            <first_frame> V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  V  T  L  S  P  L  R  F  F  M  C  F  I  F  I  V  I  L  K  I  Q  Y  F  P  F  Y  P  A  L  I  A  V  I  V  H  T  S  L  I  L  </first_frame>
            <second_frame>  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  K  L  L  F  L  L  S  A  S  S  C  V  L  F  L  L  L  F  *  K  F  S  I  F  L  S  I  L  L  *  L  L  L  L  C  I  H  L  *  S  Y </second_frame>
            <third_frame>   A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S  S  Y  S  F  S  S  P  L  L  H  V  F  Y  F  Y  C  Y  F  E  N  S  V  F  S  F  L  S  C  F  D  C  C  Y  C  A  Y  I  F  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23807" stop="24391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQVTLSPLRFFMCFIFIVILKIQYFPFYPALIAVIVHTSLIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="37691" PGL_stop="27612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37691" e_stop="37555"/>
            <exon e_start="34016" e_stop="33683"/>
            <exon e_start="32708" e_stop="32586"/>
            <exon e_start="31899" e_stop="31831"/>
            <exon e_start="31317" e_stop="31048"/>
            <exon e_start="30376" e_stop="30026"/>
            <exon e_start="29829" e_stop="29552"/>
            <exon e_start="28671" e_stop="28297"/>
            <exon e_start="28213" e_stop="27612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.947" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="37691" e_stop="37555" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.947">
            <gDNA_intron_boundary i_start="37554" i_stop="34017" i_length="3538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34016" e_stop="33683" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33682" i_stop="32709" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32708" e_stop="32586" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32585" i_stop="31900" i_length="686"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31899" e_stop="31831" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.967">
            <gDNA_intron_boundary i_start="31830" i_stop="31318" i_length="513"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31317" e_stop="31048" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.866" acc_prob="0.950">
            <gDNA_intron_boundary i_start="31047" i_stop="30377" i_length="671"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30376" e_stop="30026" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="30025" i_stop="29830" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29829" e_stop="29552" e_length="278"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29551" i_stop="28672" i_length="880"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28671" e_stop="28297" e_length="375"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28296" i_stop="28214" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="28213" e_stop="27612" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37691" stop="37555"/>
              <exon start="34016" stop="33684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37638" stop="37555"/>
              <exon start="34016" stop="33683"/>
              <exon start="32708" stop="32586"/>
              <exon start="31899" stop="31831"/>
              <exon start="31317" stop="31048"/>
              <exon start="30376" stop="30026"/>
              <exon start="29829" stop="29552"/>
              <exon start="28671" stop="28297"/>
              <exon start="28213" stop="27616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33861" stop="33683"/>
              <exon start="32708" stop="32586"/>
              <exon start="31899" stop="31831"/>
              <exon start="31317" stop="31150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33767" stop="33683"/>
              <exon start="32708" stop="32586"/>
              <exon start="31899" stop="31883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30246" stop="30026"/>
              <exon start="29829" stop="29567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28668" stop="28297"/>
              <exon start="28213" stop="27612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28297"/>
              <exon start="28213" stop="27616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28297"/>
              <exon start="28213" stop="27632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28395" stop="28297"/>
              <exon start="28213" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG : AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG : ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA : GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG : ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG : TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG : TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG : GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG : AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGAGCAA</gDNA_template>
            <first_frame> S  L  I  P  L  Y  T  F  I  Y  K  L  F  S  R  V  S  G  R  E  N  G  R  E  T  S  S  E  V  G  I  V  C  I  S  F  F  Y  R  H  R  K  D  F  V  R :   G  N  W  I  L  K  L  E  M  A  A  T  A  T  A  S  S  T  G  P  R  Y  A  P  E  D  P  T  L  P  K  P  W  K  G  L  V  D  G  K  T  G  Y  L  Y  F  W  N  P  E  T  N  T  T  Q  Y  E  K  P  V  A  T  P  H  V  G  A  A  Q  H  K  S  S  V  S  V  S  S  S  V  E  R  P  S  Q  S  Q  C  S  D  H  G  D  N  R  G  T  N  G  A  L  S  K  L  S  S  G  E  G  I  Q  :  T  A  R  A  N  E  L  S  R  D  E  T  S  A  P  K  G  Y  S  A  S  A  A  A  S  D  I  S  P  D  A  Y  R  R  Q  H  E  I  S  V  S  :  G  G  D  V  P  P  P  F  T  S  F  E  A  T  G  F  P  S  E  I  L  R  E  :  I  H  Q  A  G  F  P  A  P  S  P  I  Q  A  Q  S  W  P  I  A  L  Q  G  R  D  I  V  A  V  A  K  T  G  S  G  K  T  L  G  F  L  L  P  G  F  I  L  L  K  Q  R  R  S  N  P  Q  S  G  P  T  I  L  V  L  S  P  T  R  E  L  A  T  Q  I  Q  D  E  A  V  K  F  G  R  S  S  K  I  S  C  T  :  C  L  Y  G  G  A  P  K  G  P  Q  L  R  D  L  D  R  G  V  D  I  V  V  A  T  P  G  R  L  N  D  I  L  E  M  R  R  V  R  L  D  Q  V  S  Y  L  V  L  D  E  A  D  R  M  L  D  M  G  F  E  P  Q  I  R  K  I  V  K  E  V  P  T  R  R  Q  T  L  M  Y  T  A  T  W  P  K  E  V  R  R  I  A  A  D  L  L  V  N  P  V  Q  V  N  I  G  N  V  D  E  L  V  A  N  K  S  I  T  Q  :  Y  I  E  V  L  S  Y  M  D  K  Q  K  R  L  D  Q  I  L  R  S  Q  E  P  G  S  K  I  I  I  F  C  S  T  K  K  M  C  D  Q  L  A  R  N  L  T  H  P  F  G  A  A  A  I  H  G  D  K  S  Q  G  E  R  D  H  V  L  S  Q  F  R  T  G  K  S  P  V  L  V  A  T  D  V  A  A  R  G  L  D  V  K  D  I  R :   V  V  V  N  Y  D  F  P  T  G  I  E  D  Y  V  H  R  I  G  R  T  G  R  A  G  A  T  G  E  A  Y  T  F  F  V  D  Q  D  A  K  H  A  S  D  L  I  K  V  L  E  G  A  N  Q  Q  V  P  T  E  L  R  D  M  A  S  R  G  G  G  M  G  R  A  R  R  Q  W  D  S  G  S  G  G  R  E  G  G  H  G  G  R  Y  D  A  G  Y  G  G  R  D  G  A  R  G  G  W  E  A  P  S  S  E  R  S  G  R  V  Y  D  S  D  S  R  D  R :   D  R  H  G  H  G  S  D  A  P  A  S  F  H  G  R  S  F  H  E  T  M  M  Q  G  S  Q  R  R  D  R  S  R  S  R  S  P  N  R  G  S  G  W  G  D  R  K  G  R  E  R  S  R  S  R  S  A  E  R  S  E  R  T  R  I  Q  V  P  V  G  G  S  F  H  E  A  M  M  G  F  T  R  S  S  A  G  D  S  R  K  D  W  E  K  E  R  S  Q  G  D  G  K  S  G  D  G  P  R  A  N  N  W  E  E  *  E  G  K  G  E  P  V  L  I  F  D  V  L  *  E  M  L  E  E  K  G  V  I  F  V  K  L  *  P  L  H  V  L  A  N  S  V  L  G  *  K  K  L  L  A  Y  Y  W  K  *  I  A  E  N  L  Q  M  G  S  F  *  R  M  *  M  *  S  I  L  P  S  N  F  V  *  W  N  Q  P  T  S  K  C  *  A  </first_frame>
            <second_frame>  H  S  Y  L  C  I  L  L  Y  I  N  Y  L  A  E  *  V  G  G  R  T  D  G  R  H  R  R  R  W  E  S  F  V  S  A  S  F  I  V  I  G  K  T  L  S   : E  V  I  G  Y  *  S  L  R  W  L  L  L  Q  L  H  L  L  L  V  H  V  M  H  Q  R  I  P  P  F  P  N  L  G  K  A  *  L  M  V  R  L  D  I  S  I  F  G  I  Q  R  P  I  L  P  N  T  R  S  L  L  L  L  L  M  W  V  L  H  N  I  N  P  L  Y  L  *  V  H  Q  L  R  G  L  L  K  V  N  V  L  T  M  V  T  T  E  V  P  M  V  P  *  A  N  F  P  L  E  R  V  F  R :   L  Q  E  Q  M  S  F  P  A  M  K  H  L  R  L  K  V  I  V  L  Q  L  P  R  V  T  Y  L  Q  M  P  I  A  V  S  M  K  F  L  S  Q :   E  V  M  C  P  H  L  S  H  R  L  K  L  L  G  F  L  Q  R  F  *  G  R :   Y  I  K  L  G  F  L  L  L  P  Q  Y  R  H  S  P  G  P  L  H  F  R  A  V  T  *  *  L  L  Q  R  L  G  L  E  K  L  *  V  S  C  F  L  A  L  F  F  *  S  N  V  G  V  I  L  N  Q  A  L  L  F  W  F  S  R  Q  Q  E  N  *  P  H  R  Y  K  M  K  L  *  S  L  V  D  L  Q  R  F  L  A  R :   V  Y  M  E  A  P  Q  K  A  L  S  Y  E  I  W  I  G  E  L  I  L  L  L  L  P  L  V  D  *  M  I  F  W  R  *  E  E  L  G  W  I  K  F  L  T  W  C  *  M  K  R  I  V  C  W  T  W  D  S  N  L  R  *  G  R  L  *  R  R  C  L  R  D  G  R  H  *  C  T  Q  Q  H  G  L  R  R  S  V  E  L  Q  L  I  Y  W  L  I  Q  F  R  L  T  L  G  M  L  M  S  L  L  R  T  S  L  L  H  S :   T  L  K  S  C  H  I  W  I  N  K  S  V  *  T  R  S  *  D  P  K  S  L  D  Q  K  S  L  S  S  V  Q  L  R  K  C  V  T  N  L  L  A  I  L  H  T  H  L  E  L  L  L  F  M  V  I  N  L  R  V  R  G  I  M  Y  *  A  S  S  A  L  A  S  P  P  F  L  L  Q  L  M  L  L  L  G  A  W  M  S  K  I  S   : G  W  W  S  T  M  I  F  Q  L  V  *  R  T  M  S  T  E  *  E  E  L  V  G  L  V  R  L  V  R  P  T  H  F  L  L  T  R  M  L  N  M  L  Q  I  L  L  K  F  *  K  E  Q  I  S  K  C  L  L  N  Y  V  I  W  L  L  E  E  V  V  W  G  G  L  G  V  N  G  I  L  A  Q  V  D  G  K  E  D  M  G  D  V  M  M  L  A  T  V  D  E  M  E  Q  G  V  V  G  K  P  L  H  Q  K  E  V  D  V  F  M  T  R  I  H  V  T   : E  I  D  M  V  M  A  L  M  L  Q  L  V  S  M  V  E  A  S  M  K  L  *  C  R  V  H  R  D  V  I  E  V  G  A  E  A  L  I  E  V  L  D  G  V  T  E  K  A  G  S  E  V  V  A  V  V  L  K  D  L  S  G  L  V  F  K  F  Q  *  V  A  V  S  M  K  P  *  W  A  S  L  D  H  Q  L  V  I  P  E  R  T  G  K  K  K  D  P  K  V  M  G  N  L  A  M  D  P  V  L  T  I  G  R  S  K  K  V  K  E  S  L  C  *  F  L  M  C  C  R  K  C  W  K  K  K  G  S  F  L  L  N  F  N  H  Y  M  F  W  Q  T  V  F  S  D  R  R  S  F  *  R  I  T  G  N  R  *  L  K  I  C  K  W  E  V  F  D  G  C  K  C  K  V  F  Y  R  Q  T  L  F  N  G  I  S  P  L  L  S  V  E  Q </second_frame>
            <third_frame>   T  H  T  F  V  Y  F  Y  I  *  I  I  *  Q  S  E  W  E  G  E  R  T  G  D  I  V  G  G  G  N  R  L  Y  Q  L  L  L  S  S  S  E  R  L  C  Q  :  R  *  L  D  T  E  A  *  D  G  C  Y  C  N  C  I  F  Y  W  S  T  L  C  T  R  G  S  H  P  S  Q  T  L  E  R  P  S  *  W  *  D  W  I  S  L  F  L  E  S  R  D  Q  Y  Y  P  I  R  E  A  C  C  Y  S  S  C  G  C  C  T  T  *  I  L  C  I  C  K  F  I  S  *  E  A  F  S  K  S  M  F  *  P  W  *  Q  Q  R  Y  Q  W  C  L  E  Q  T  F  L  W  R  G  Y  S   : D  C  K  S  K  *  A  F  P  R  *  N  I  C  A  *  R  L  *  C  F  S  C  R  E  *  H  I  S  R  C  L  S  P  S  A  *  N  F  C  L   : R  R  *  C  A  P  T  F  H  I  V  *  S  Y  W  V  S  F  R  D  F  E  G   : D  T  S  S  W  V  S  C  S  F  P  N  T  G  T  V  L  A  H  C  T  S  G  P  *  H  S  S  C  C  K  D  W  V  W  K  N  S  R  F  L  A  S  W  L  Y  S  S  K  A  T  S  E  *  S  S  I  R  P  Y  Y  F  G  S  L  A  N  K  R  I  S  H  T  D  T  R  *  S  C  E  V  W  *  I  F  K  D  F  L  H   : V  F  I  W  R  R  P  K  R  P  S  A  T  R  S  G  *  G  S  *  Y  C  C  C  Y  P  W  S  I  E  *  Y  F  G  D  E  K  S  *  A  G  S  S  F  L  L  G  V  R  *  S  G  S  Y  A  G  H  G  I  R  T  S  D  K  E  D  C  E  G  G  A  Y  A  T  A  D  T  D  V  H  S  N  M  A  *  G  G  P  *  N  C  S  *  S  I  G  *  S  S  S  G  *  H  W  E  C  *  *  A  C  C  E  Q  V  Y  Y  T   : V  H  *  S  L  V  I  Y  G  *  T  K  A  S  R  P  D  L  E  I  P  R  A  W  I  K  N  H  Y  L  L  F  N  *  E  N  V  *  P  T  C  S  Q  S  Y  T  P  I  W  S  C  C  Y  S  W  *  *  I  S  G  *  E  G  S  C  T  E  P  V  P  H  W  Q  V  P  R  S  C  C  N  *  C  C  C  S  G  L  G  C  Q  R  Y  Q  :  G  G  G  Q  L  *  F  S  N  W  Y  R  G  L  C  P  Q  N  R  K  N  W  S  G  W  C  D  W  *  G  L  H  I  F  C  *  P  G  C  *  T  C  F  R  S  Y  *  S  F  R  R  S  K  S  A  S  A  Y  *  T  T  *  Y  G  F  S  R  R  W  Y  G  E  G  *  A  S  M  G  F  W  L  R  W  T  G  R  R  T  W  G  T  L  *  C  W  L  R  W  T  R  W  S  K  G  W  L  G  S  P  F  I  R  K  K  W  T  C  L  *  L  G  F  T  *  Q  :  R  *  T  W  S  W  L  *  C  S  S  *  F  P  W  S  K  L  P  *  N  Y  D  A  G  F  T  E  T  *  *  K  *  E  Q  K  P  *  *  R  F  W  M  G  *  Q  K  R  Q  G  A  K  S  *  P  *  C  *  K  I  *  A  D  S  Y  S  S  S  S  R  W  Q  F  P  *  S  H  D  G  L  H  *  I  I  S  W  *  F  P  K  G  L  G  K  R  K  I  P  R  *  W  E  I  W  R  W  T  P  C  *  Q  L  G  G  V  R  R  *  R  R  A  C  V  D  F  *  C  V  V  G  N  A  G  R  K  R  G  H  F  C  *  T  L  T  T  T  C  F  G  K  Q  C  S  R  I  E  E  A  F  S  V  L  L  E  I  D  S  *  K  S  A  N  G  K  F  L  T  D  V  N  V  K  Y  F  T  V  K  L  C  L  M  E  S  A  H  F  *  V  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37691" stop="37555"/>
                    <exon start="34016" stop="33683"/>
                    <exon start="32708" stop="32586"/>
                    <exon start="31899" stop="31831"/>
                    <exon start="31317" stop="31048"/>
                    <exon start="30376" stop="30026"/>
                    <exon start="29829" stop="29552"/>
                    <exon start="28671" stop="28297"/>
                    <exon start="28213" stop="27868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2280</number_coding_nucleotides>
                  <number_encoded_amino_acids>760</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLIPLYTFIYKLFSRVSGRENGRETSSEVGIVCISFFYRHRKDFVRGNWILKLEMAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYEKPVATPHVGAAQHKSSVSVSSSVERPSQSQCSDHGDNRGTNGALSKLSSGEGIQTARANELSRDETSAPKGYSASAAASDISPDAYRRQHEISVSGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQIQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTHPFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIEDYVHRIGRTGRAGATGEAYTFFVDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGRARRQWDSGSGGREGGHGGRYDAGYGGRDGARGGWEAPSSERSGRVYDSDSRDRDRHGHGSDAPASFHGRSFHETMMQGSQRRDRSRSRSPNRGSGWGDRKGRERSRSRSAERSERTRIQVPVGGSFHEAMMGFTRSSAGDSRKDWEKERSQGDGKSGDGPRANNWEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47941" PGL_stop="40761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47941" e_stop="47762"/>
            <exon e_start="47043" e_stop="46843"/>
            <exon e_start="46754" e_stop="46662"/>
            <exon e_start="44497" e_stop="44438"/>
            <exon e_start="44337" e_stop="44065"/>
            <exon e_start="43060" e_stop="42989"/>
            <exon e_start="42916" e_stop="42860"/>
            <exon e_start="42145" e_stop="42005"/>
            <exon e_start="41906" e_stop="41856"/>
            <exon e_start="41783" e_stop="41688"/>
            <exon e_start="41582" e_stop="41499"/>
            <exon e_start="41312" e_stop="41210"/>
            <exon e_start="41105" e_stop="40761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="0.911"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="47941" e_stop="47762" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="47761" i_stop="47044" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47043" e_stop="46843" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.867" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46754" e_stop="46662" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44497" e_stop="44438" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.874">
            <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44337" e_stop="44065" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.792" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43060" e_stop="42989" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42860" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.823" acc_prob="0.947">
            <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42145" e_stop="42005" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41906" e_stop="41856" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41783" e_stop="41688" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41582" e_stop="41499" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41312" e_stop="41210" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="0.944">
            <gDNA_exon_boundary e_start="41105" e_stop="40761" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47941" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47918" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47900" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47899" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47899" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47899" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47875" stop="47762"/>
              <exon start="47043" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46884" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46737" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46683" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44489" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44301" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44274" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44274" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44184" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44127" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43044" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43043" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43013" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41891" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41766" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41722" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41098" stop="40761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATCCACAAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG : GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG : GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG : ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG : GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG : ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG : GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG : GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG : CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCT</gDNA_template>
            <first_frame> S  I  H  K  V  R  K  M  K  E  E  Q  H  C  R  S  L  *  P  R  T  *  K  L  G  H  T  P  F  S  L  P  L  Y  F  F  R  A  *  G  F  A  V  S  L  T  I  F  H  R  Q  C  E  Q  F  T  S  P  L  Q  :  V  L  R  S  R  Q  S  V  T  *  V  I  T  I  Y  Q  Y  Y  K  E  V  Y  L  L  F  S  D  M  A  S  G  S  I  M  S  S  A  A  G  K  P  I  T  D  V  V  L  I  D  N  L  P  K  E  I  N  A  M  K  I  N  D  D  K  E  G  K  :  E  M  E  A  A  V  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  K  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  S  I  V  S  L  K  H  C  F  F  S  T  T  E  K  D  E  L  Y  L  N  L  V  L  E  F  V  P  E  T  L  Y  R  V  L  R  H  Y  S  K  A  N  Q  R  M  P  I  I  Y  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  A  Y  I  H  G  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  L  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  N  A  I  D  I  W  S  V  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  F  </first_frame>
            <second_frame>  A  S  T  K  *  E  K  *  K  K  S  S  I  A  E  V  Y  S  Q  E  P  E  N  L  A  I  R  H  F  H  F  H  F  I  S  S  A  L  R  V  L  L  F  H  S  Q  F  S  I  A  N  A  S  N  S  L  H  R  C  R :   F  *  E  A  D  N  L  S  L  E  S  *  P  F  I  S  T  I  R  K  F  I  C  Y  S  V  T  W  L  R  A  V  L  C  L  Q  Q  L  A  N  L  L  L  M  L  C  L  L  T  T  Y  L  K  K  *  M  Q  *  R  S  T  M  T  K  K  E  R :   K  W  K  P  L  L  W  M  G  M  E  L  K  Q  V  T  S  L  *  R  L  L  G  G  K  M  V  S  Q  S  R :   P  *  V  T  W  R  S  V  *  L  D  R  V  P  L  E  L  C  S  R :   P  N  A  L  K  Q  E  K  P  W  Q  *  K  R  S  C  R  T  R  D  T  R  I  G  N  C  R  L  C  D  F  L  I  I  L  V  L  F  H  *  S  T  A  S  F  R  P  Q  K  R  M  S  F  I  *  I  W  F  *  N  L  Y  L  K  L  S  T  V  C  *  D  I  T  A  K  Q  T  N  G  C  L  L  Y  M  S  N  C  T  H  I  R :   Y  L  E  L  W  L  T  Y  M  G  *  E  S  A  T  G  T  S  N  L  R  I  Y  W :   S  T  P  T  H  I  S  L  S  F  V  I  L  G  V  Q  K  S  W :   S  K  A  S  Q  T  F  H  I  S  V  H  V  I  I  V  R  P  N  *  Y  S  E  Q  L  S  T  P  M  Q  L  T  F  G  L  W  V  V  S  *  L  N  C  F  L  D  S :   P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  D  S </second_frame>
            <third_frame>   H  P  Q  S  E  K  N  E  R  R  A  A  L  Q  K  S  I  A  K  N  L  K  T  W  P  Y  A  I  F  T  S  T  L  F  L  P  R  L  G  F  C  C  F  T  H  N  F  P  S  P  M  R  A  I  H  F  T  A  A   : G  F  E  K  Q  T  I  C  H  L  S  H  N  H  L  S  V  L  *  G  S  L  F  V  I  Q  *  H  G  F  G  Q  Y  Y  V  F  S  S  W  Q  T  Y  Y  *  C  C  A  Y  *  Q  P  T  *  R  N  K  C  N  E  D  Q  R  *  Q  R  R  K   : G  N  G  S  R  C  C  G  W  E  W  N  *  N  R  S  H  H  C  D  D  Y  W  G  E  K  W  S  A  K  A   : D  H  K  L  H  G  G  A  C  S  W  T  G  F  L  W  N  C  V  P   : G  Q  M  P  *  N  R  R  N  R  G  N  K  K  G  L  A  G  Q  E  I  Q  E  S  G  I  A  D  Y  A  T  S  *  S  S  *  Y  C  F  T  E  A  L  L  L  F  D  H  R  K  G  *  A  L  S  K  F  G  S  R  I  C  T  *  N  S  L  P  C  V  K  T  L  Q  Q  S  K  P  T  D  A  Y  Y  I  C  Q  T  V  H  I  S   : D  I  *  S  F  G  L  H  T  W  D  R  S  L  P  Q  G  H  Q  T  S  E  F  T   : G  Q  P  P  H  T  S  A  *  A  L  *  F  W  E  C  K  S  P   : G  Q  R  R  A  K  H  F  I  Y  L  F  T  L  L  S  C  A  R  T  N  I  R  S  N  *  V  H  Q  C  N  *  H  L  V  C  G  L  C  P  S  *  T  A  S  W  T   : A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47013" stop="46843"/>
                    <exon start="46754" stop="46662"/>
                    <exon start="44497" stop="44438"/>
                    <exon start="44337" stop="44065"/>
                    <exon start="43060" stop="42989"/>
                    <exon start="42916" stop="42860"/>
                    <exon start="42145" stop="42005"/>
                    <exon start="41906" stop="41856"/>
                    <exon start="41783" stop="41688"/>
                    <exon start="41582" stop="41499"/>
                    <exon start="41312" stop="41210"/>
                    <exon start="41105" stop="41023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITIYQYYKEVYLLFSDMASGSIMSSAAGKPITDVVLIDNLPKEINAMKINDDKEGKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPSIVSLKHCFFSTTEKDELYLNLVLEFVPETLYRVLRHYSKANQRMPIIYVKLYTYQIFRALAYIHGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTNAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47939" stop="47762"/>
                    <exon start="47043" stop="46988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPQSEKNERRAALQKSIAKNLKTWPYAIFTSTLFLPRLGFCCFTHNFPSPMRAIHFTAAGFEKQTICHLSHNHLSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47907" e_stop="47762"/>
            <exon e_start="46966" e_stop="46843"/>
            <exon e_start="46754" e_stop="46662"/>
            <exon e_start="44497" e_stop="44438"/>
            <exon e_start="44337" e_stop="44065"/>
            <exon e_start="43060" e_stop="42989"/>
            <exon e_start="42916" e_stop="42860"/>
            <exon e_start="42145" e_stop="42005"/>
            <exon e_start="41906" e_stop="41856"/>
            <exon e_start="41783" e_stop="41688"/>
            <exon e_start="41582" e_stop="41499"/>
            <exon e_start="41312" e_stop="41210"/>
            <exon e_start="41105" e_stop="40761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.993"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="47907" e_stop="47762" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="47761" i_stop="46967" i_length="795"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46966" e_stop="46843" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.867" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46842" i_stop="46755" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46754" e_stop="46662" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46661" i_stop="44498" i_length="2164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44497" e_stop="44438" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.874">
            <gDNA_intron_boundary i_start="44437" i_stop="44338" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44337" e_stop="44065" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.792" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44064" i_stop="43061" i_length="1004"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43060" e_stop="42989" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42988" i_stop="42917" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42860" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.823" acc_prob="0.947">
            <gDNA_intron_boundary i_start="42859" i_stop="42146" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42145" e_stop="42005" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42004" i_stop="41907" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41906" e_stop="41856" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41783" e_stop="41688" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41582" e_stop="41499" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41312" e_stop="41210" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="0.944">
            <gDNA_exon_boundary e_start="41105" e_stop="40761" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47907" stop="47762"/>
              <exon start="46966" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="43031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46884" stop="46843"/>
              <exon start="46754" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46737" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46683" stop="46662"/>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44489" stop="44438"/>
              <exon start="44337" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44301" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44274" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44274" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44184" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44159" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44127" stop="44065"/>
              <exon start="43060" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43044" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43043" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43013" stop="42989"/>
              <exon start="42916" stop="42860"/>
              <exon start="42145" stop="42005"/>
              <exon start="41906" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41891" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41766" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41722" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41098" stop="40761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG : TGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG : GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG : ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG : GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG : ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG : GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG : GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG : CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCT</gDNA_template>
            <first_frame> S  I  A  E  V  Y  S  Q  E  P  E  N  L  A  I  R  H  F  H  F  H  F  I  S  S  A  L  R  V  L  L  F  H  S  Q  F  S  I  A  N  A  S  N  S  L  H  R  C  S :   D  M  A  S  G  S  I  M  S  S  A  A  G  K  P  I  T  D  V  V  L  I  D  N  L  P  K  E  I  N  A  M  K  I  N  D  D  K  E  G  K  :  E  M  E  A  A  V  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  K  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  S  I  V  S  L  K  H  C  F  F  S  T  T  E  K  D  E  L  Y  L  N  L  V  L  E  F  V  P  E  T  L  Y  R  V  L  R  H  Y  S  K  A  N  Q  R  M  P  I  I  Y  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  A  Y  I  H  G  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  L  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  N  A  I  D  I  W  S  V  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  F  </first_frame>
            <second_frame>  A  L  Q  K  S  I  A  K  N  L  K  T  W  P  Y  A  I  F  T  S  T  L  F  L  P  R  L  G  F  C  C  F  T  H  N  F  P  S  P  M  R  A  I  H  F  T  A  A   : V  T  W  L  R  A  V  L  C  L  Q  Q  L  A  N  L  L  L  M  L  C  L  L  T  T  Y  L  K  K  *  M  Q  *  R  S  T  M  T  K  K  E  R :   K  W  K  P  L  L  W  M  G  M  E  L  K  Q  V  T  S  L  *  R  L  L  G  G  K  M  V  S  Q  S  R :   P  *  V  T  W  R  S  V  *  L  D  R  V  P  L  E  L  C  S  R :   P  N  A  L  K  Q  E  K  P  W  Q  *  K  R  S  C  R  T  R  D  T  R  I  G  N  C  R  L  C  D  F  L  I  I  L  V  L  F  H  *  S  T  A  S  F  R  P  Q  K  R  M  S  F  I  *  I  W  F  *  N  L  Y  L  K  L  S  T  V  C  *  D  I  T  A  K  Q  T  N  G  C  L  L  Y  M  S  N  C  T  H  I  R :   Y  L  E  L  W  L  T  Y  M  G  *  E  S  A  T  G  T  S  N  L  R  I  Y  W :   S  T  P  T  H  I  S  L  S  F  V  I  L  G  V  Q  K  S  W :   S  K  A  S  Q  T  F  H  I  S  V  H  V  I  I  V  R  P  N  *  Y  S  E  Q  L  S  T  P  M  Q  L  T  F  G  L  W  V  V  S  *  L  N  C  F  L  D  S :   P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  D  S </second_frame>
            <third_frame>   H  C  R  S  L  *  P  R  T  *  K  L  G  H  T  P  F  S  L  P  L  Y  F  F  R  A  *  G  F  A  V  S  L  T  I  F  H  R  Q  C  E  Q  F  T  S  P  L  Q  :  *  H  G  F  G  Q  Y  Y  V  F  S  S  W  Q  T  Y  Y  *  C  C  A  Y  *  Q  P  T  *  R  N  K  C  N  E  D  Q  R  *  Q  R  R  K   : G  N  G  S  R  C  C  G  W  E  W  N  *  N  R  S  H  H  C  D  D  Y  W  G  E  K  W  S  A  K  A   : D  H  K  L  H  G  G  A  C  S  W  T  G  F  L  W  N  C  V  P   : G  Q  M  P  *  N  R  R  N  R  G  N  K  K  G  L  A  G  Q  E  I  Q  E  S  G  I  A  D  Y  A  T  S  *  S  S  *  Y  C  F  T  E  A  L  L  L  F  D  H  R  K  G  *  A  L  S  K  F  G  S  R  I  C  T  *  N  S  L  P  C  V  K  T  L  Q  Q  S  K  P  T  D  A  Y  Y  I  C  Q  T  V  H  I  S   : D  I  *  S  F  G  L  H  T  W  D  R  S  L  P  Q  G  H  Q  T  S  E  F  T   : G  Q  P  P  H  T  S  A  *  A  L  *  F  W  E  C  K  S  P   : G  Q  R  R  A  K  H  F  I  Y  L  F  T  L  L  S  C  A  R  T  N  I  R  S  N  *  V  H  Q  C  N  *  H  L  V  C  G  L  C  P  S  *  T  A  S  W  T   : A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47907" stop="47762"/>
                    <exon start="46966" stop="46843"/>
                    <exon start="46754" stop="46662"/>
                    <exon start="44497" stop="44438"/>
                    <exon start="44337" stop="44065"/>
                    <exon start="43060" stop="42989"/>
                    <exon start="42916" stop="42860"/>
                    <exon start="42145" stop="42005"/>
                    <exon start="41906" stop="41856"/>
                    <exon start="41783" stop="41688"/>
                    <exon start="41582" stop="41499"/>
                    <exon start="41312" stop="41210"/>
                    <exon start="41105" stop="41023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAEVYSQEPENLAIRHFHFHFISSALRVLLFHSQFSIANASNSLHRCSDMASGSIMSSAAGKPITDVVLIDNLPKEINAMKINDDKEGKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPSIVSLKHCFFSTTEKDELYLNLVLEFVPETLYRVLRHYSKANQRMPIIYVKLYTYQIFRALAYIHGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTNAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41910" e_stop="41856"/>
            <exon e_start="41783" e_stop="41688"/>
            <exon e_start="41582" e_stop="41499"/>
            <exon e_start="41312" e_stop="41210"/>
            <exon e_start="41105" e_stop="40761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41910" e_stop="41856" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="41855" i_stop="41784" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41783" e_stop="41688" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="41687" i_stop="41583" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41582" e_stop="41499" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41498" i_stop="41313" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41312" e_stop="41210" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41209" i_stop="41106" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="41105" e_stop="40761" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41910" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41891" stop="41856"/>
              <exon start="41783" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41766" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41722" stop="41688"/>
              <exon start="41582" stop="41499"/>
              <exon start="41312" stop="41210"/>
              <exon start="41105" stop="40819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41098" stop="40761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCT</gDNA_template>
            <first_frame> V  A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S  I   </first_frame>
            <second_frame>  *  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  F  </second_frame>
            <third_frame>   S  P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41906" stop="41856"/>
                    <exon start="41783" stop="41688"/>
                    <exon start="41582" stop="41499"/>
                    <exon start="41312" stop="41210"/>
                    <exon start="41105" stop="41023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="52446" PGL_stop="48996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52446" e_stop="52149"/>
            <exon e_start="52054" e_stop="51916"/>
            <exon e_start="51425" e_stop="51233"/>
            <exon e_start="50196" e_stop="50086"/>
            <exon e_start="49657" e_stop="49595"/>
            <exon e_start="49505" e_stop="49375"/>
            <exon e_start="49295" e_stop="48996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.448" e_score="1.000"/>
          <exon-intron don_prob="0.537" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52446" e_stop="52149" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52148" i_stop="52055" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52054" e_stop="51916" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51915" i_stop="51426" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51425" e_stop="51233" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51232" i_stop="50197" i_length="1036"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50196" e_stop="50086" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.448">
            <gDNA_intron_boundary i_start="50085" i_stop="49658" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49657" e_stop="49595" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.537" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49594" i_stop="49506" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49505" e_stop="49375" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49374" i_stop="49296" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49295" e_stop="48996" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50086"/>
              <exon start="49657" stop="49595"/>
              <exon start="49505" stop="49375"/>
              <exon start="49295" stop="48996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52440" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50086"/>
              <exon start="49657" stop="49595"/>
              <exon start="49505" stop="49416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52411" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50086"/>
              <exon start="49657" stop="49595"/>
              <exon start="49505" stop="49486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52378" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50086"/>
              <exon start="49657" stop="49595"/>
              <exon start="49505" stop="49495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52374" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52371" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52371" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52369" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52366" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52365" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51233"/>
              <exon start="50196" stop="50157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52365" stop="52149"/>
              <exon start="52054" stop="51916"/>
              <exon start="51425" stop="51404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52040" stop="51916"/>
              <exon start="51425" stop="51345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC : CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA : AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG : AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG : GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG : GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG : TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</gDNA_template>
            <first_frame> T  K  D  K  I  S  N  I  C  I  C  R  G  E  I  V  R  F  V  V  W  Q  M  A  M  A  A  A  S  W  A  S  S  S  S  F  T  R  F  L  R  P  L  L  S  R  N  S  S  P  S  P  I  S  Y  S  L  H  R  Y  K  S  A  N  C  L  F  F  S  A  S  S  N  K  P  P  K  L  A  V  Y  A  Q  A  R  R  V  L  S  S  K  T  K  G  D  E  I  A  T   : P  A  D  L  S  F  V  V  P  L  K  I  V  E  Y  P  D  P  I  L  R  A  K  N  K  R  I  D  N  F  D  A  N  L  K  K  L  V  D  E  M  F  D  I  M  Y  K :   T  D  G  I  G  L  S  A  P  Q  V  G  M  N  V  Q  L  M  V  F  N  A  A  G  E  R  G  E  G  E  E  I  V  L  V  N  P  R  V  S  R  Y  S  R  R  I  I  P  Y  E  E  G  C  L  S  F  P  M  I  H  G  D  V  K  :  R  P  E  S  V  K  V  D  A  Q  D  I  N  G  T  R  F  E  I  S  L  S  A  L  P  A  R  V  F  Q  H  E  F  D  H  L  Q  :  G  V  L  F  F  D  K  M  T  D  E  V  L  D  T  I  R  E  K  L  V  :  A  L  E  K  K  Y  E  D  R  T  G  L  P  T  P  E  S  I  N  T  R  K  I  K  K  A  A  V  G  F  G  K  S  *  I  Y  W  D  L  *  N  L  L  S :   I  C  M  M  K  H  K  M  G  L  P  A  F  A  E  L  W  Y  M  P  L  I  *  T  L  V  L  C  E  T  S  Q  K  C  G  L  *  G  L  S  L  Y  *  Y  C  S  V  *  E  *  *  G  Y  H  R  N  L  Y  G  K  R  T  V  K  Y  I  *  S  N  I  E  H  Q  V  C  R  L  T  L  G  L  L  *  F  S  V  E  K  N  N  S  R  E  V  P  *  V  P  Q   </first_frame>
            <second_frame>  R  R  T  K  L  V  I  F  A  S  V  E  V  K  L  S  V  L  L  C  G  K  W  Q  W  L  P  Q  V  G  H  L  L  L  R  S  L  A  F  S  G  L  S  S  V  G  T  R  L  P  P  L  S  V  T  V  F  I  D  I  N  Q  L  T  V  Y  F  S  P  Q  A  V  I  N  L  Q  N  *  L  F  M  L  K  L  G  E  F  Y  L  P  K  P  K  E  M  K  *  Q  L  :  L  L  T  *  A  S  W  F  H  *  K  L  W  S  I  Q  T  R  F  *  E  R  R  I  R  G  L  T  I  L  T  L  I  *  R  S  *  L  M  K  C  S  I  L  C  T   : K  L  M  A  L  G  C  L  H  H  K  L  E  *  M  F  N  *  W  Y  L  M  Q  P  V  N  V  E  R  G  R  R  L  F  S  S  I  H  V  S  V  D  I  L  G  G  L  Y  L  M  K  K  V  A  Y  L  F  Q  *  Y  M  V  M  L  R :   D  Q  S  Q  L  R  L  T  H  R  T  L  M  V  Q  G  L  R  *  A  C  L  L  F  Q  H  E  S  S  N  M  N  L  I  T  Y  R :   E  F  F  S  L  T  K  *  L  T  K  S  W  T  P  F  V  K  N  *  W :   R  *  K  R  N  M  K  I  G  L  G  C  Q  P  L  K  A  *  I  H  E  K  *  R  R  L  L  L  D  L  A  N  H  E  F  T  G  I  Y  E  I  F  S   : V  F  V  *  *  S  T  K  W  D  C  Q  L  L  L  N  F  G  I  C  H  *  F  R  H  L  C  F  V  K  L  A  K  S  V  A  S  E  V  Y  P  C  T  D  T  A  L  F  R  N  D  R  V  T  T  E  I  C  M  E  K  E  L  L  S  T  F  D  Q  I  L  N  T  K  F  V  V  *  H  L  G  C  C  S  S  V  W  R  K  T  T  Q  E  K  F  H  K  F  P  S  </second_frame>
            <third_frame>   E  G  Q  N  *  *  Y  L  H  L  *  R  *  N  C  P  F  C  C  V  A  N  G  N  G  C  R  K  L  G  I  F  F  F  V  H  S  L  S  P  A  S  P  Q  S  E  L  V  S  L  P  Y  Q  L  Q  S  S  S  I  *  I  S  *  L  F  I  F  L  R  K  Q  *  *  T  S  K  I  S  C  L  C  S  S  *  A  S  F  I  F  Q  N  Q  R  R  *  N  S  N  S :   C  *  L  E  L  R  G  S  I  E  N  C  G  V  S  R  P  D  F  K  S  E  E  *  E  D  *  Q  F  *  R  *  F  E  E  V  S  *  *  N  V  R  Y  Y  V  Q  :  N  *  W  H  W  A  V  C  T  T  S  W  N  E  C  S  T  N  G  I  *  C  S  R  *  T  W  R  G  G  G  D  C  S  R  Q  S  T  C  Q  *  I  F  *  E  D  Y  T  L  *  R  R  L  L  I  F  S  N  D  T  W  *  C  *   : E  T  R  V  S  *  G  *  R  T  G  H  *  W  Y  K  V  *  D  K  L  V  C  S  S  S  T  S  L  P  T  *  I  *  S  P  T   : G  S  S  F  L  *  Q  N  D  *  R  S  P  G  H  H  S  *  K  I  S   : G  A  R  K  E  I  *  R  *  D  W  V  A  N  P  *  K  H  K  Y  T  K  N  K  E  G  C  C  W  I  W  Q  I  M  N  L  L  G  S  M  K  S  S  Q  :  Y  L  Y  D  E  A  Q  N  G  I  A  S  F  C  *  T  L  V  Y  A  I  N  L  D  T  C  A  L  *  N  *  P  K  V  W  P  L  R  F  I  L  V  L  I  L  L  C  L  G  M  I  G  L  P  Q  K  F  V  W  K  K  N  C  *  V  H  L  I  K  Y  *  T  P  S  L  S  F  N  T  W  V  V  V  V  Q  C  G  E  K  Q  L  K  R  S  S  I  S  S  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52446" stop="52149"/>
                    <exon start="52054" stop="51916"/>
                    <exon start="51425" stop="51233"/>
                    <exon start="50196" stop="50086"/>
                    <exon start="49657" stop="49595"/>
                    <exon start="49505" stop="49404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKDKISNICICRGEIVRFVVWQMAMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="79991" PGL_stop="60721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79991" e_stop="79842"/>
            <exon e_start="79731" e_stop="79703"/>
            <exon e_start="60867" e_stop="60721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.746" e_score="0.873"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.862"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.873">
            <gDNA_exon_boundary e_start="79991" e_stop="79842" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.746">
            <gDNA_intron_boundary i_start="79841" i_stop="79732" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.862">
            <gDNA_exon_boundary e_start="79731" e_stop="79703" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79702" i_stop="60868" i_length="18835"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="60867" e_stop="60721" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79991" stop="79842"/>
              <exon start="79731" stop="79703"/>
              <exon start="60867" stop="60721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79960" stop="79842"/>
              <exon start="79731" stop="79703"/>
              <exon start="60867" stop="60721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCTCGCTTTATACACAGAAGTGTATAATTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAAAATTGCTG : CGAAATAGGCCAGCGAATTATACACTTGT : GAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGAAAAACATATATTTTCTTGCTATACACTTATAATTATGCAATATACATATATTTTA</gDNA_template>
            <first_frame> H  S  R  F  I  H  R  S  V  *  F  C  F  C  F  V  *  S  E  R  K  L  Y  I  Y  T  C  K  N  V  Y  L  R  V  I  H  L  I  I  Q  F  T  N  I  L  L  Q  K  L  L  :  R  N  R  P  A  N  Y  T  L  V :   N  Y  T  I  A  V  K  Y  N  F  L  *  L  Y  T  T  E  V  Y  I  L  C  F  C  F  C  I  K  R  E  K  N  I  Y  F  L  A  I  H  L  *  L  C  N  I  H  I  F   </first_frame>
            <second_frame>  I  L  A  L  Y  T  E  V  Y  N  S  V  S  V  L  Y  K  A  R  E  N  C  I  Y  T  H  A  K  M  Y  I  F  V  L  Y  T  *  L  Y  N  L  Q  T  F  Y  F  K  N  C  C :   E  I  G  Q  R  I  I  H  L   : *  I  I  Q  L  Q  *  N  T  I  F  S  S  F  I  Q  Q  K  C  I  Y  C  V  S  V  F  V  *  S  E  R  K  T  Y  I  F  L  L  Y  T  Y  N  Y  A  I  Y  I  Y  F  </second_frame>
            <third_frame>   F  S  L  Y  T  Q  K  C  I  I  L  F  L  F  C  I  K  R  E  K  I  V  Y  I  H  M  Q  K  C  I  S  S  C  Y  T  L  N  Y  T  I  Y  K  H  F  T  S  K  I  A   : A  K  *  A  S  E  L  Y  T  C  :  E  L  Y  N  C  S  E  I  Q  F  S  L  A  L  Y  N  R  S  V  Y  I  V  F  L  F  L  Y  K  A  R  E  K  H  I  F  S  C  Y  T  L  I  I  M  Q  Y  T  Y  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61698" PGL_stop="64342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62817" e_stop="64115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="62817" e_stop="64115" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62817" stop="63541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62817" stop="63539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62817" stop="63491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62818" stop="63499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62818" stop="63327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62818" stop="63171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63182" stop="63798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63585" stop="64115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</gDNA_template>
            <first_frame> F  D  L  T  V  E  K  S  L  S  L  I  M  *  S  I  F  Y  P  Y  *  L  T  C  T  N  Y  K  I  K  T  C  H  P  Y  I  K  F  C  Q  F  I  I  L  S  S  Y  R  Y  R  *  N  K  K  I  *  V  L  I  Q  P  P  *  L  V  K  Q  G  Q  L  F  D  R  N  L  A  F  H  Y  Y  H  *  I  *  H  M  N  L  S  F  *  T  F  A  F  *  V  F  Q  I  C  Y  N  I  S  L  I  Y  M  H  F  T  H  V  *  K  T  K  I  I  Y  F  F  I  L  S  I  Y  I  K  K  F  K  K  *  L  R  S  R  F  Y  Q  M  K  N  D  K  K  Q  R  L  A  N  S  F  D  *  S  R  R  I  T  Y  C  F  G  S  S  Q  K  T  R  G  P  S  C  T  L  D  V  F  S  V  Y  R  K  *  Y  L  K  *  K  K  I  R  K  N  Y  V  *  Y  G  E  S  H  F  P  S  K  Y  *  K  V  I  C  W  Y  A  C  I  *  L  L  K  G  D  F  F  S  F  K  N  L  S  L  *  S  N  F  F  H  N  F  R  I  E  N  M  R  *  L  S  F  E  Q  L  S  V  I  P  L  Y  I  *  Q  N  I  E  T  G  *  N  H  F  P  L  R  I  V  *  V  M  Y  I  *  I  K  F  D  M  I  T  H  K  *  K  E  *  P  F  T  I  N  *  I  E  L  I  M  *  N  I  G  I  Y  N  *  N  M  H  V  Y  K  Q  W  D  F  K  Y  Q  P  Q  N  M  Y  T  T  S  I  L  Y  Q  K  L  N  V  T  *  K  F  N  F  N  I  I  *  N  K  *  F  S  F  I  S  Y  L  V  S  *  F  H  Y  T  Q  R  L  K  N  E  K  K  I  I  C  D  L  K  Y  N  *  *  C  I  F  *  I  L  L  S  *  I  Y  Q  E  K  Y  *  N  *  N  T  Y  *  I  Y  I  *  K  N  H  S  S  C  D  K  L  K  K  *  N  K  K  R </first_frame>
            <second_frame>  L  I  *  Q  S  K  N  L  *  A  *  S  C  K  V  Y  S  I  H  I  N  *  H  A  Q  I  T  K  L  K  H  V  T  P  T  L  N  F  V  N  L  L  F  S  L  P  I  D  I  G  K  I  K  K  Y  R  S  S  F  S  H  H  N  *  *  S  K  D  N  C  S  T  G  I  W  P  S  I  I  T  I  E  Y  D  I  *  I  *  V  F  E  L  L  L  F  E  F  F  K  Y  V  I  I  S  P  *  Y  I  C  T  L  H  M  C  K  K  Q  K  L  F  I  F  S  Y  Y  Q  Y  I  *  K  N  L  K  N  N  Y  G  L  G  S  I  K  *  K  M  I  R  S  K  G  L  Q  I  A  L  I  E  V  D  G  *  L  I  V  L  V  H  H  K  K  Q  G  V  L  L  V  P  *  M  F  L  V  Y  I  E  N  N  I  *  N  R  K  K  F  V  K  I  M  F  D  T  E  K  V  I  F  Q  V  S  I  R  K  S  F  A  G  M  H  V  F  N  C  *  K  G  I  F  F  L  S  K  T  S  L  Y  N  P  I  F  F  I  I  L  G  S  R  I  *  G  N  Y  H  L  S  N  S  R  L  S  L  S  I  Y  S  K  T  L  K  L  V  K  I  T  S  P  *  G  *  F  K  L  C  I  Y  K  L  S  L  I  *  *  L  T  N  R  K  N  N  L  L  Q  S  I  K  L  S  *  *  C  K  I  S  V  Y  I  T  E  I  C  M  Y  T  S  S  G  T  S  N  I  S  H  R  T  C  I  Q  P  R  F  F  T  K  N  *  T  *  L  K  S  L  I  S  I  *  S  E  I  S  S  F  H  S  F  H  I  *  C  L  N  F  T  I  H  K  G  *  R  M  K  R  R  *  S  V  I  L  N  I  I  N  N  V  Y  F  K  F  Y  Y  L  K  F  I  R  K  N  I  E  I  E  I  L  I  K  Y  I  Y  K  K  T  T  L  L  V  I  N  S  K  N  K  I  R  N   </second_frame>
            <third_frame>   *  F  D  S  R  K  I  F  K  L  N  H  V  K  Y  I  L  S  I  L  I  N  M  H  K  L  Q  N  *  N  M  S  P  L  H  *  I  L  S  I  Y  Y  S  L  F  L  *  I  *  V  K  *  K  N  I  G  P  H  S  A  T  I  I  S  K  A  R  T  I  V  R  Q  E  F  G  L  P  L  L  P  L  N  M  T  Y  E  F  K  F  L  N  F  C  F  L  S  F  S  N  M  L  *  Y  L  L  N  I  Y  A  L  Y  T  C  V  K  N  K  N  Y  L  F  F  H  I  I  N  I  Y  K  K  I  *  K  I  I  T  V  S  V  L  S  N  E  K  *  *  E  A  K  A  C  K  *  L  *  L  K  *  T  D  N  L  L  F  W  F  I  T  K  N  K  G  S  F  L  Y  L  R  C  F  *  C  I  S  K  I  I  F  E  I  E  K  N  S  *  K  L  C  L  I  R  R  K  S  F  S  K  *  V  L  E  S  H  L  L  V  C  M  Y  L  T  V  K  R  G  F  F  F  F  Q  K  P  L  F  I  I  Q  F  F  S  *  F  *  D  R  E  Y  E  V  I  I  I  *  A  T  L  G  Y  P  S  L  Y  I  A  K  H  *  N  W  L  K  S  L  P  L  E  D  S  L  S  Y  V  Y  I  N  *  V  *  Y  D  N  S  Q  I  E  R  I  T  F  Y  N  Q  L  N  *  A  D  N  V  K  Y  R  Y  I  *  L  K  Y  A  C  I  Q  A  V  G  L  Q  I  S  A  T  E  H  V  Y  N  L  D  S  L  P  K  I  K  R  D  L  K  V  *  F  Q  Y  N  L  K  *  V  V  F  I  H  F  I  F  S  V  L  I  S  L  Y  T  K  V  K  E  *  K  E  D  N  L  *  S  *  I  *  L  I  M  Y  I  L  N  F  I  I  L  N  L  S  G  K  I  L  K  L  K  Y  L  L  N  I  Y  I  K  K  P  L  F  L  *  *  T  Q  K  I  K  *  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61707" e_stop="61889"/>
            <exon e_start="61964" e_stop="62317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61707" e_stop="61889" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61890" i_stop="61963" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61964" e_stop="62317" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61707" stop="61889"/>
              <exon start="61964" stop="62317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG : GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</gDNA_template>
            <first_frame> F  S  S  H  P  I  P  L  L  F  F  I  I  *  K  K  W  I  K  E  H  V  I  L  K  M  L  K  L  G  K  V  L  G  L  W  K  K  I  *  F  S  S  I  T  L  L  I  M  V  K  V  F  G  I  P  S  L  D  P  L  :  V  *  S  V  L  E  K  V  V  D  L  D  G  L  I  I  S  D  L  M  F  G  G  E  I  L  H  R  R  N  N  C  *  S  W  N  Y  M  P  S  G  E  T  G  E  L  I  S  F  S  S  *  G  F  D  N  *  I  K  *  *  N  Y  I  K  E  N  L  E  N  C  R  N  F  S  F  I  F  L  K  M  K  N  K  K  N  L  P  C  V  C  M  C  W  M  D  K  E  E  L  S  Q  N  L  L  E  L  D  L  T  S  *  K  R  V  M  G  N </first_frame>
            <second_frame>  F  L  H  I  P  F  L  F  S  S  L  L  Y  K  K  N  G  *  K  N  M  *  F  S  R  C  *  S  *  E  R  S  L  D  Y  G  R  R  F  D  S  H  Q  L  H  C  *  S  W  *  R  C  L  E  F  P  R  S  I  R  W :   F  E  A  Y  W  K  K  L  *  T  *  M  A  *  L  S  P  T  *  C  S  E  G  K  Y  Y  T  G  G  T  I  V  D  H  G  T  T  C  Q  V  G  K  P  V  S  *  F  L  F  L  A  R  V  L  I  I  K  *  N  D  E  I  I  *  K  K  I  W  K  I  V  E  I  S  P  S  F  F  *  K  *  K  I  K  K  I  S  H  V  F  V  C  V  G  W  I  K  R  N  C  P  K  I  S  *  N  *  I  *  H  H  E  R  E  *  W  G   </second_frame>
            <third_frame>   F  F  T  S  H  S  S  S  L  L  Y  Y  I  K  K  M  D  K  R  T  C  D  S  Q  D  V  E  V  R  K  G  P  W  T  M  E  E  D  L  I  L  I  N  Y  I  A  N  H  G  E  G  V  W  N  S  L  A  R  S  A   : G  L  K  R  T  G  K  S  C  R  L  R  W  L  N  Y  L  R  P  D  V  R  R  G  N  I  T  P  E  E  Q  L  L  I  M  E  L  H  A  K  W  G  N  R  *  V  D  F  F  F  *  L  G  F  *  *  L  N  K  M  M  K  L  Y  K  R  K  F  G  K  L  *  K  F  L  L  H  F  F  K  N  E  K  *  K  K  S  P  M  C  L  Y  V  L  D  G  *  R  G  I  V  P  K  S  L  R  T  R  F  D  I  M  K  E  S  D  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61709" stop="61889"/>
                    <exon start="61964" stop="62097"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTSHSSSLLYYIKKMDKRTCDSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61698" e_stop="61889"/>
            <exon e_start="61964" e_stop="62093"/>
            <exon e_start="64265" e_stop="64342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.932"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.977"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="61698" e_stop="61889" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61890" i_stop="61963" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="61964" e_stop="62093" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62094" i_stop="64264" i_length="2171"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="64265" e_stop="64342" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61698" stop="61889"/>
              <exon start="61964" stop="62093"/>
              <exon start="64265" stop="64342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG : GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCG : GTGGTCGAAAATTGCAAAACATTTACCTGGTAGAACAGATAATGAGATAAAGAACTTATGGAGGACAAGAATTCAAAA</gDNA_template>
            <first_frame> K  K  L  F  S  S  H  P  I  P  L  L  F  F  I  I  *  K  K  W  I  K  E  H  V  I  L  K  M  L  K  L  G  K  V  L  G  L  W  K  K  I  *  F  S  S  I  T  L  L  I  M  V  K  V  F  G  I  P  S  L  D  P  L  :  V  *  S  V  L  E  K  V  V  D  L  D  G  L  I  I  S  D  L  M  F  G  G  E  I  L  H  R  R  N  N  C  *  S  W  N  Y  M  P  S  G  E  T   : G  G  R  K  L  Q  N  I  Y  L  V  E  Q  I  M  R  *  R  T  Y  G  G  Q  E  F  K  </first_frame>
            <second_frame>  K  N  F  F  L  H  I  P  F  L  F  S  S  L  L  Y  K  K  N  G  *  K  N  M  *  F  S  R  C  *  S  *  E  R  S  L  D  Y  G  R  R  F  D  S  H  Q  L  H  C  *  S  W  *  R  C  L  E  F  P  R  S  I  R  W :   F  E  A  Y  W  K  K  L  *  T  *  M  A  *  L  S  P  T  *  C  S  E  G  K  Y  Y  T  G  G  T  I  V  D  H  G  T  T  C  Q  V  G  K  P  :  V  V  E  N  C  K  T  F  T  W  *  N  R  *  *  D  K  E  L  M  E  D  K  N  S  K </second_frame>
            <third_frame>   K  T  F  F  F  T  S  H  S  S  S  L  L  Y  Y  I  K  K  M  D  K  R  T  C  D  S  Q  D  V  E  V  R  K  G  P  W  T  M  E  E  D  L  I  L  I  N  Y  I  A  N  H  G  E  G  V  W  N  S  L  A  R  S  A   : G  L  K  R  T  G  K  S  C  R  L  R  W  L  N  Y  L  R  P  D  V  R  R  G  N  I  T  P  E  E  Q  L  L  I  M  E  L  H  A  K  W  G  N  R :   W  S  K  I  A  K  H  L  P  G  R  T  D  N  E  I  K  N  L  W  R  T  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61700" stop="61889"/>
                    <exon start="61964" stop="62093"/>
                    <exon start="64265" stop="64340"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFFFTSHSSSLLYYIKKMDKRTCDSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNLWRTRIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="73191" PGL_stop="78696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73191" e_stop="73319"/>
            <exon e_start="74107" e_stop="74158"/>
            <exon e_start="74416" e_stop="74496"/>
            <exon e_start="75421" e_stop="75539"/>
            <exon e_start="76513" e_stop="76732"/>
            <exon e_start="77321" e_stop="77439"/>
            <exon e_start="77796" e_stop="78696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.272" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73191" e_stop="73319" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73320" i_stop="74106" i_length="787"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74107" e_stop="74158" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74159" i_stop="74415" i_length="257"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74416" e_stop="74496" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74497" i_stop="75420" i_length="924"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75421" e_stop="75539" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75540" i_stop="76512" i_length="973"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76513" e_stop="76732" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.804" acc_prob="0.272">
            <gDNA_intron_boundary i_start="76733" i_stop="77320" i_length="588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77321" e_stop="77439" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77440" i_stop="77795" i_length="356"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="77796" e_stop="78696" e_length="901"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73191" stop="73319"/>
              <exon start="74107" stop="74158"/>
              <exon start="74416" stop="74496"/>
              <exon start="75421" stop="75539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73194" stop="73319"/>
              <exon start="74107" stop="74158"/>
              <exon start="74416" stop="74496"/>
              <exon start="75421" stop="75539"/>
              <exon start="76513" stop="76732"/>
              <exon start="77321" stop="77439"/>
              <exon start="77796" stop="77970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77382" stop="77439"/>
              <exon start="77796" stop="78696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77975" stop="78507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77995" stop="78685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78221" stop="78696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCT : GTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAG : ATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACG : GCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG : GCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTA : TGGCCCGCCTATTTACTCCTAAAATTGCAAGTTTCTACGAAGAATTTTACCGGTCAAAAGGAGTTAAGTTTGTGAAAGGCACGGTCTTGACATCATTTGATTTCGACTCCAATGATAAG : ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</gDNA_template>
            <first_frame> K  V  E  M  G  R  A  F  V  Y  V  I  L  G  G  G  V  A  A  G  Y  A  A  H  E  F  V  K  R  G  V  S  H  G  E  L  C  I  I  S  E  E  P  :  V  A  P  Y  E  R  P  A  L  S  K  G  Y  L  L  P  E   : D  P  A  R  L  P  A  F  H  C  C  V  G  S  N  E  E  R  L  T  P  K  W  Y  K  E  N   : G  I  E  L  V  L  G  T  R  V  K  S  A  D  V  R  R  K  T  L  L  T  A  T  G  E  T  I  T  Y  K  I  L  I  V  A  T  G  A  R  :  A  L  K  L  E  E  F  G  V  S  G  S  D  A  E  S  V  C  Y  L  R  D  L  A  D  A  N  R  L  V  N  V  M  Q  S  S  G  G  G  N  A  V  V  I  G  G  G  Y  I  G  M  E  C  A  A  S  L  V  I  G  K  I  N  V  T  M  V  F  P  E  A  H  C   : M  A  R  L  F  T  P  K  I  A  S  F  Y  E  E  F  Y  R  S  K  G  V  K  F  V  K  G  T  V  L  T  S  F  D  F  D  S  N  D  K  :  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  </first_frame>
            <second_frame>  K  W  K  W  V  G  P  L  C  M  *  Y  W  E  E  E  L  L  L  V  M  Q  L  M  N  L  L  N  E  V  S  L  M  A  N  Y  A  S  S  L  K  N  L :   L  L  L  M  N  D  L  H  *  A  R  V  I  Y  Y  Q  K  :  I  L  H  V  C  L  L  F  I  V  V  L  V  Q  M  R  K  G  *  H  R  S  G  T  R  K  T  :  A  L  S  W  S  L  E  L  V  *  N  Q  L  M  *  E  G  R  H  C  *  P  Q  P  V  K  P  *  P  T  R  F  S  *  W  Q  L  V  L  G :   L  *  S  L  K  S  L  E  *  V  A  Q  M  L  R  V  Y  V  I  Y  G  I  W  L  M  Q  T  G  W  L  M  *  C  N  L  A  V  V  A  M  L  L  *  L  V  V  A  T  *  E  W  N  V  L  L  L  W  *  S  A  K  *  M  S  P  W  S  F  Q  K  H  T  V  :  W  P  A  Y  L  L  L  K  L  Q  V  S  T  K  N  F  T  G  Q  K  E  L  S  L  *  K  A  R  S  *  H  H  L  I  S  T  P  M  I  R :   *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A </second_frame>
            <third_frame>   S  G  N  G  *  G  L  C  V  C  N  I  G  R  R  S  C  C  W  L  C  S  S  *  I  C  *  T  R  C  L  S  W  R  T  M  H  H  L  *  R  T   : C  C  S  L  *  T  T  C  I  K  Q  G  L  F  T  T  R  R :   S  C  T  S  A  C  F  S  L  L  C  W  F  K  *  G  K  V  D  T  E  V  V  Q  G  K  R :   H  *  A  G  P  W  N  S  C  K  I  S  *  C  E  K  E  D  I  V  D  R  N  R  *  N  H  N  L  Q  D  S  H  S  G  N  W  C  S   : G  F  E  A  *  R  V  W  S  E  W  L  R  C  *  E  C  M  L  F  T  G  F  G  *  C  K  Q  A  G  *  C  D  A  I  *  R  W  W  Q  C  C  C  N  W  W  W  L  H  R  N  G  M  C  C  F  F  G  D  R  Q  N  K  C  H  H  G  L  S  R  S  T  L  Y :   G  P  P  I  Y  S  *  N  C  K  F  L  R  R  I  L  P  V  K  R  S  *  V  C  E  R  H  G  L  D  I  I  *  F  R  L  Q  *  *   : D  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73191" stop="73319"/>
                    <exon start="74107" stop="74158"/>
                    <exon start="74416" stop="74496"/>
                    <exon start="75421" stop="75539"/>
                    <exon start="76513" stop="76732"/>
                    <exon start="77321" stop="77439"/>
                    <exon start="77796" stop="78530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVEMGRAFVYVILGGGVAAGYAAHEFVKRGVSHGELCIISEEPVAPYERPALSKGYLLPEDPARLPAFHCCVGSNEERLTPKWYKENGIELVLGTRVKSADVRRKTLLTATGETITYKILIVATGARALKLEEFGVSGSDAESVCYLRDLADANRLVNVMQSSGGGNAVVIGGGYIGMECAASLVIGKINVTMVFPEAHCMARLFTPKIASFYEEFYRSKGVKFVKGTVLTSFDFDSNDKMTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77781" e_stop="78696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="77781" e_stop="78696" e_length="916"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77781" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77975" stop="78507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77995" stop="78685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78221" stop="78696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACCTTTTATGTAGATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</gDNA_template>
            <first_frame> G  P  F  M  *  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  </first_frame>
            <second_frame>  D  L  L  C  R  *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A </second_frame>
            <third_frame>   T  F  Y  V  D  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77796" stop="78530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76513" e_stop="76732"/>
            <exon e_start="77796" e_stop="78696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.999" e_score="0.982"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="76513" e_stop="76732" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76733" i_stop="77795" i_length="1063"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="77796" e_stop="78696" e_length="901"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76513" stop="76732"/>
              <exon start="77796" stop="78213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77863" stop="78368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77975" stop="78507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77995" stop="78685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78221" stop="78696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTATGTTATTTACGGGATTTGGCTGATGCAAACAGGCTGGTTAATGTGATGCAATCTAGCGGTGGTGGCAATGCTGTTGTAATTGGTGGTGGCTACATAGGAATGGAATGTGCTGCTTCTTTGGTGATCGGCAAAATAAATGTCACCATGGTCTTTCCAGAAGCACACTGTA : ATGACTGCGGTGAATTTGAGAGATGGAACCAAGCTACCTGCTGACATGGTCATCGTAGGCATTGGAATTCGACCAAATACCAGCCTCTTTGAAGGGCAACTTACTCTTGAGAAAGGAGGGATAAAAGTCAATGGCCAAATGCAGTCAAGCAACAGCTCAGTCTATGCTGTTGGGGATGTTGCAACTTTTCCTGTCAAAATTTTCGGTGAGACGCGGAGACTTGAACACGTTGATTCTGCAAGGAAGTCAGCAAGGCATGCAGTTGCTGCAATCATGGAACCAGAGAAAACAACAGAGTTTGACTACTTGCCATTCTTCTACTCCAGAGTCTTCACACTCTCTTGGCAGTTCTATGGTGACAGTACTGGTGATGTAGTCCATTTTGGGGATTTCTTGGGGAATAGCTTTGGTGCATATTGGGTGAACAAAGGTCACGTCGTTGGGTCTTTTCTAGAGGGTGGAACCAAAGAGGAGTATGAGGCTATTGCAAAGATCACAAGGCTCAAACCAGCAATTGAGGACTTGTCTGATCTCGAAACGCAGGGTTTAGGATTTGCATTGACATTGAGTGATAAACCAGAGCCATCGGAGGCTGTTGTTGTCAGCAGTAGTTCGGGTTCCACTTTTGTAACAGAGAAACCTTTACATGTTTGGCATGCAACAGCTGGAGTCATTTTGGCTGCTTCAATTGCTGCCTTTGCATACTGGTATGGTAGGAGGCGTAGAAGGTGGTAAATGTCTTGTTCCCCACGGAAGATTTTTACACGTCGATTCCTGCTGTGTTGTATGATTTTAGCTTAGAGAATTTGAAATACTTGGCCTGTAAATGGCTTCAATTTTACAAACATGTATTCTGTCTTTACAGTATATATCAATACACATTATCCTCAATCCCTCAGCA</gDNA_template>
            <first_frame> A  L  K  L  E  E  F  G  V  S  G  S  D  A  E  S  V  C  Y  L  R  D  L  A  D  A  N  R  L  V  N  V  M  Q  S  S  G  G  G  N  A  V  V  I  G  G  G  Y  I  G  M  E  C  A  A  S  L  V  I  G  K  I  N  V  T  M  V  F  P  E  A  H  C   : N  D  C  G  E  F  E  R  W  N  Q  A  T  C  *  H  G  H  R  R  H  W  N  S  T  K  Y  Q  P  L  *  R  A  T  Y  S  *  E  R  R  D  K  S  Q  W  P  N  A  V  K  Q  Q  L  S  L  C  C  W  G  C  C  N  F  S  C  Q  N  F  R  *  D  A  E  T  *  T  R  *  F  C  K  E  V  S  K  A  C  S  C  C  N  H  G  T  R  E  N  N  R  V  *  L  L  A  I  L  L  L  Q  S  L  H  T  L  L  A  V  L  W  *  Q  Y  W  *  C  S  P  F  W  G  F  L  G  E  *  L  W  C  I  L  G  E  Q  R  S  R  R  W  V  F  S  R  G  W  N  Q  R  G  V  *  G  Y  C  K  D  H  K  A  Q  T  S  N  *  G  L  V  *  S  R  N  A  G  F  R  I  C  I  D  I  E  *  *  T  R  A  I  G  G  C  C  C  Q  Q  *  F  G  F  H  F  C  N  R  E  T  F  T  C  L  A  C  N  S  W  S  H  F  G  C  F  N  C  C  L  C  I  L  V  W  *  E  A  *  K  V  V  N  V  L  F  P  T  E  D  F  Y  T  S  I  P  A  V  L  Y  D  F  S  L  E  N  L  K  Y  L  A  C  K  W  L  Q  F  Y  K  H  V  F  C  L  Y  S  I  Y  Q  Y  T  L  S  S  I  P  Q   </first_frame>
            <second_frame>  L  *  S  L  K  S  L  E  *  V  A  Q  M  L  R  V  Y  V  I  Y  G  I  W  L  M  Q  T  G  W  L  M  *  C  N  L  A  V  V  A  M  L  L  *  L  V  V  A  T  *  E  W  N  V  L  L  L  W  *  S  A  K  *  M  S  P  W  S  F  Q  K  H  T  V  :  M  T  A  V  N  L  R  D  G  T  K  L  P  A  D  M  V  I  V  G  I  G  I  R  P  N  T  S  L  F  E  G  Q  L  T  L  E  K  G  G  I  K  V  N  G  Q  M  Q  S  S  N  S  S  V  Y  A  V  G  D  V  A  T  F  P  V  K  I  F  G  E  T  R  R  L  E  H  V  D  S  A  R  K  S  A  R  H  A  V  A  A  I  M  E  P  E  K  T  T  E  F  D  Y  L  P  F  F  Y  S  R  V  F  T  L  S  W  Q  F  Y  G  D  S  T  G  D  V  V  H  F  G  D  F  L  G  N  S  F  G  A  Y  W  V  N  K  G  H  V  V  G  S  F  L  E  G  G  T  K  E  E  Y  E  A  I  A  K  I  T  R  L  K  P  A  I  E  D  L  S  D  L  E  T  Q  G  L  G  F  A  L  T  L  S  D  K  P  E  P  S  E  A  V  V  V  S  S  S  S  G  S  T  F  V  T  E  K  P  L  H  V  W  H  A  T  A  G  V  I  L  A  A  S  I  A  A  F  A  Y  W  Y  G  R  R  R  R  R  W  *  M  S  C  S  P  R  K  I  F  T  R  R  F  L  L  C  C  M  I  L  A  *  R  I  *  N  T  W  P  V  N  G  F  N  F  T  N  M  Y  S  V  F  T  V  Y  I  N  T  H  Y  P  Q  S  L  S  </second_frame>
            <third_frame>   F  E  A  *  R  V  W  S  E  W  L  R  C  *  E  C  M  L  F  T  G  F  G  *  C  K  Q  A  G  *  C  D  A  I  *  R  W  W  Q  C  C  C  N  W  W  W  L  H  R  N  G  M  C  C  F  F  G  D  R  Q  N  K  C  H  H  G  L  S  R  S  T  L  * :   *  L  R  *  I  *  E  M  E  P  S  Y  L  L  T  W  S  S  *  A  L  E  F  D  Q  I  P  A  S  L  K  G  N  L  L  L  R  K  E  G  *  K  S  M  A  K  C  S  Q  A  T  A  Q  S  M  L  L  G  M  L  Q  L  F  L  S  K  F  S  V  R  R  G  D  L  N  T  L  I  L  Q  G  S  Q  Q  G  M  Q  L  L  Q  S  W  N  Q  R  K  Q  Q  S  L  T  T  C  H  S  S  T  P  E  S  S  H  S  L  G  S  S  M  V  T  V  L  V  M  *  S  I  L  G  I  S  W  G  I  A  L  V  H  I  G  *  T  K  V  T  S  L  G  L  F  *  R  V  E  P  K  R  S  M  R  L  L  Q  R  S  Q  G  S  N  Q  Q  L  R  T  C  L  I  S  K  R  R  V  *  D  L  H  *  H  *  V  I  N  Q  S  H  R  R  L  L  L  S  A  V  V  R  V  P  L  L  *  Q  R  N  L  Y  M  F  G  M  Q  Q  L  E  S  F  W  L  L  Q  L  L  P  L  H  T  G  M  V  G  G  V  E  G  G  K  C  L  V  P  H  G  R  F  L  H  V  D  S  C  C  V  V  *  F  *  L  R  E  F  E  I  L  G  L  *  M  A  S  I  L  Q  T  C  I  L  S  L  Q  Y  I  S  I  H  I  I  L  N  P  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76700" stop="76732"/>
                    <exon start="77796" stop="78530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSPWSFQKHTVMTAVNLRDGTKLPADMVIVGIGIRPNTSLFEGQLTLEKGGIKVNGQMQSSNSSVYAVGDVATFPVKIFGETRRLEHVDSARKSARHAVAAIMEPEKTTEFDYLPFFYSRVFTLSWQFYGDSTGDVVHFGDFLGNSFGAYWVNKGHVVGSFLEGGTKEEYEAIAKITRLKPAIEDLSDLETQGLGFALTLSDKPEPSEAVVVSSSSGSTFVTEKPLHVWHATAGVILAASIAAFAYWYGRRRRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80173" PGL_stop="85078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80173" e_stop="80963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="80173" e_stop="80963" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80173" stop="80931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80197" stop="80582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80201" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80201" stop="80901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80201" stop="80825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80201" stop="80364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80202" stop="80963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80202" stop="80938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80202" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80202" stop="80840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80204" stop="80931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80205" stop="80843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80206" stop="80939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80206" stop="80938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80206" stop="80726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80208" stop="80812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80208" stop="80770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80209" stop="80812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80210" stop="80684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80210" stop="80662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80210" stop="80648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80212" stop="80944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80212" stop="80944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80214" stop="80553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80215" stop="80931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80218" stop="80823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="80635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80222" stop="80783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80223" stop="80639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80225" stop="80736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80228" stop="80915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80243" stop="80792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80262" stop="80642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80314" stop="80797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80324" stop="80877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80382" stop="80940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80390" stop="80936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80423" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80432" stop="80630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80433" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80475" stop="80931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279614" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80505" stop="80897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80511" stop="80934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80527" stop="80931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80527" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281367" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80542" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80550" stop="80915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80550" stop="80915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80559" stop="80924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80559" stop="80924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80579" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281366" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATCCCCTTATCCTAATTTTTGTATCTCCCTCTTTCACTCTCCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCACGCACGCTTCAATTTCCTTCCCCACCAAAACCCTAGAACTTCCCATTCGCACTCCCAAACTGTACCACCGCCGGGCAACTCTCGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGAGATGAAATCTCCAACTTAACCCTCGCTGATGCCCAGAAACTCGTCGAGTACCTTCAGGATAAGCTTGGAGTTTCAGCCGCATCCTTCGCTCCCGCTGCCGTCGTCGCTTCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAGGAGAAGACGGAATTTGATGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCGACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAACTTGAAGAAGCTGGTGCTAAAGTTTCTATTGCTTAAACAAATTTGTGGTAAATGTTCGTTCTTAGTTGTGTTTTCGCAAGAGAATTCAGTTGTTAGATATACTTGTACTCAATTTTCTCAAATCAAGTTTTTTCAGTCGTCTTTGCTTATGATTTGTGATTGTTCCAGTTTTAATTGTTAGTG</gDNA_template>
            <first_frame> F  Q  S  P  Y  P  N  F  C  I  S  L  F  H  S  P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P  R  T  L  Q  F  P  S  P  P  K  P  *  N  F  P  F  A  L  P  N  C  T  T  A  G  Q  L  S  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  E  M  K  S  P  T  *  P  S  L  M  P  R  N  S  S  S  T  F  R  I  S  L  E  F  Q  P  H  P  S  L  P  L  P  S  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  R  R  R  R  N  L  M  *  S  S  M  K  C  R  V  M  L  E  L  R  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  N  L  K  K  L  V  L  K  F  L  L  L  K  Q  I  C  G  K  C  S  F  L  V  V  F  S  Q  E  N  S  V  V  R  Y  T  C  T  Q  F  S  Q  I  K  F  F  Q  S  S  L  L  M  I  C  D  C  S  S  F  N  C  *   </first_frame>
            <second_frame>  F  N  P  L  I  L  I  F  V  S  P  S  F  T  L  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  A  R  F  N  F  L  P  H  Q  N  P  R  T  S  H  S  H  S  Q  T  V  P  P  P  G  N  S  R  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  R  *  N  L  Q  L  N  P  R  *  C  P  E  T  R  R  V  P  S  G  *  A  W  S  F  S  R  I  L  R  S  R  C  R  R  R  F  P  W  W  R  S  R  R  C  S  S  C  G  *  G  E  D  G  I  *  C  S  H  R  *  S  A  E  *  C  *  N  C  D  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  T  *  R  S  W  C  *  S  F  Y  C  L  N  K  F  V  V  N  V  R  S  *  L  C  F  R  K  R  I  Q  L  L  D  I  L  V  L  N  F  L  K  S  S  F  F  S  R  L  C  L  *  F  V  I  V  P  V  L  I  V  S  </second_frame>
            <third_frame>   S  I  P  L  S  *  F  L  Y  L  P  L  S  L  S  Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T  H  A  S  I  S  F  P  T  K  T  L  E  L  P  I  R  T  P  K  L  Y  H  R  R  A  T  L  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  N  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  S  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  T  N  L  W  *  M  F  V  L  S  C  V  F  A  R  E  F  S  C  *  I  Y  L  Y  S  I  F  S  N  Q  V  F  S  V  V  F  A  Y  D  L  *  L  F  Q  F  *  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80193" stop="80816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYLPLSLSQFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLELPIRTPKLYHRRATLVRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVSAASFAPAAVVASPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84305" e_stop="85078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="84305" e_stop="85078" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84305" stop="85071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84306" stop="85058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84306" stop="85054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84312" stop="84999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84314" stop="85066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84315" stop="84846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84315" stop="84811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84315" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84317" stop="85078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84317" stop="84987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84318" stop="84741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84320" stop="84814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84327" stop="85066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84328" stop="84986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84339" stop="84994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84339" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84370" stop="85061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84377" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84399" stop="85044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84404" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84443" stop="85051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84443" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84459" stop="84988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84487" stop="85046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84526" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84630" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84630" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84721" stop="85048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCCCTCTTTCATTTCCTCTCCTCAATTTCTCTTTTGCTCTGCTACAATGGCTTCCACATTATCCACTATTGCCCTTTGTTCACCTTCTCACATTTCCCCCTCCACACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTAATTGTTATT</gDNA_template>
            <first_frame> A  P  S  F  I  S  S  P  Q  F  L  F  C  S  A  T  M  A  S  T  L  S  T  I  A  L  C  S  P  S  H  I  S  P  S  T  H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  I  F  M  I  L  H  N  F  V  I  V  I </first_frame>
            <second_frame>  L  P  L  S  F  P  L  L  N  F  S  F  A  L  L  Q  W  L  P  H  Y  P  L  L  P  F  V  H  L  L  T  F  P  P  P  H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  Q  Y  L  *  F  C  I  I  L  *  L  L   </second_frame>
            <third_frame>   S  L  F  H  F  L  S  S  I  S  L  L  L  C  Y  N  G  F  H  I  I  H  Y  C  P  L  F  T  F  S  H  F  P  L  H  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I  N  I  Y  D  S  A  *  F  C  N  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84305" stop="84913"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSFISSPQFLFCSATMASTLSTIALCSPSHISPSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80218" e_stop="80314"/>
            <exon e_start="84412" e_stop="85069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80218" e_stop="80314" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80315" i_stop="84411" i_length="4097"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="84412" e_stop="85069" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80218" stop="80314"/>
              <exon start="84412" stop="85032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80246" stop="80314"/>
              <exon start="84412" stop="85042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84443" stop="85051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84443" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84459" stop="84988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84487" stop="85046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84526" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84630" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84630" stop="85069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84721" stop="85048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATTTCTCTTTAGCTCAGCTACAATGGCTTCCACATTATCCACAATTACCCTTCGTTCTCCCTCTCCTATTTCTCCAGCAACCGCAAGCTCCAC : ACACGCTTCAATTTCTTTCCCCACCAAAACCCTACAACTCCCCATTCGCACTTCCAAACTCCACCACCGCCGAGCCACTTTTGTCCGCCCTCTCGCCGCCGTCGAAGCACCGGAGAAGGTAGTCCAGCTCGGGGATGAAATCTCCACTTTAACCCTAGCTGACGCCCAGAAACTGGTTGAGTACCTTCAGGATAAGCTTGGTGTTTCAGCCGCATCCTTCGCTCCTGCTGCCGTTGTCGCTGCCCCTGGTGGCGCAGCCGCAGATGCTCCAGCTGTGGTTGAAGAGAAGACGGAATTTGACGTAGTCATCGATGAAGTGCCGAGTAATGCTAGAATTGCTACCATTAAGGCTGTTAGGGCTTTAACAAGTTTGGCATTGAAAGAGGCTAAGGAATTGATTGAAGGATTGCCTAAGAAATTTAAGGAGGGTGTTTCCAAGGATGAGGCTGAAGATGCTAAGAAACAGCTCGAAGAAGCTGGTGCTAAAGTCTCTATTGCTTAAATCAATTTGTGGTAAATGTTCATTCTTATTCCTTTTTTTTTTTTTGAACTGGGAAAAATTACTGAGTTTTTTTTTGTTTTTGTAAGAGCATTCAGCTATTAGATAGTTGTACCCAATTTTCTAAAATCAATATTTATGATTCTGCATAATTTTGTA</gDNA_template>
            <first_frame> P  N  F  S  L  A  Q  L  Q  W  L  P  H  Y  P  Q  L  P  F  V  L  P  L  L  F  L  Q  Q  P  Q  A  P   : H  T  L  Q  F  L  S  P  P  K  P  Y  N  S  P  F  A  L  P  N  S  T  T  A  E  P  L  L  S  A  L  S  P  P  S  K  H  R  R  R  *  S  S  S  G  M  K  S  P  L  *  P  *  L  T  P  R  N  W  L  S  T  F  R  I  S  L  V  F  Q  P  H  P  S  L  L  L  P  L  S  L  P  L  V  A  Q  P  Q  M  L  Q  L  W  L  K  R  R  R  N  L  T  *  S  S  M  K  C  R  V  M  L  E  L  L  P  L  R  L  L  G  L  *  Q  V  W  H  *  K  R  L  R  N  *  L  K  D  C  L  R  N  L  R  R  V  F  P  R  M  R  L  K  M  L  R  N  S  S  K  K  L  V  L  K  S  L  L  L  K  S  I  C  G  K  C  S  F  L  F  L  F  F  F  L  N  W  E  K  L  L  S  F  F  L  F  L  *  E  H  S  A  I  R  *  L  Y  P  I  F  *  N  Q  Y  L  *  F  C  I  I  L   </first_frame>
            <second_frame>  P  I  S  L  *  L  S  Y  N  G  F  H  I  I  H  N  Y  P  S  F  S  L  S  Y  F  S  S  N  R  K  L  H  :  T  R  F  N  F  F  P  H  Q  N  P  T  T  P  H  S  H  F  Q  T  P  P  P  P  S  H  F  C  P  P  S  R  R  R  R  S  T  G  E  G  S  P  A  R  G  *  N  L  H  F  N  P  S  *  R  P  E  T  G  *  V  P  S  G  *  A  W  C  F  S  R  I  L  R  S  C  C  R  C  R  C  P  W  W  R  S  R  R  C  S  S  C  G  *  R  E  D  G  I  *  R  S  H  R  *  S  A  E  *  C  *  N  C  Y  H  *  G  C  *  G  F  N  K  F  G  I  E  R  G  *  G  I  D  *  R  I  A  *  E  I  *  G  G  C  F  Q  G  *  G  *  R  C  *  E  T  A  R  R  S  W  C  *  S  L  Y  C  L  N  Q  F  V  V  N  V  H  S  Y  S  F  F  F  F  *  T  G  K  N  Y  *  V  F  F  C  F  C  K  S  I  Q  L  L  D  S  C  T  Q  F  S  K  I  N  I  Y  D  S  A  *  F  C  </second_frame>
            <third_frame>   Q  F  L  F  S  S  A  T  M  A  S  T  L  S  T  I  T  L  R  S  P  S  P  I  S  P  A  T  A  S  S  T :   H  A  S  I  S  F  P  T  K  T  L  Q  L  P  I  R  T  S  K  L  H  H  R  R  A  T  F  V  R  P  L  A  A  V  E  A  P  E  K  V  V  Q  L  G  D  E  I  S  T  L  T  L  A  D  A  Q  K  L  V  E  Y  L  Q  D  K  L  G  V  S  A  A  S  F  A  P  A  A  V  V  A  A  P  G  G  A  A  A  D  A  P  A  V  V  E  E  K  T  E  F  D  V  V  I  D  E  V  P  S  N  A  R  I  A  T  I  K  A  V  R  A  L  T  S  L  A  L  K  E  A  K  E  L  I  E  G  L  P  K  K  F  K  E  G  V  S  K  D  E  A  E  D  A  K  K  Q  L  E  E  A  G  A  K  V  S  I  A  *  I  N  L  W  *  M  F  I  L  I  P  F  F  F  F  E  L  G  K  I  T  E  F  F  F  V  F  V  R  A  F  S  Y  *  I  V  V  P  N  F  L  K  S  I  F  M  I  L  H  N  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80220" stop="80314"/>
                    <exon start="84412" stop="84913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFLFSSATMASTLSTITLRSPSPISPATASSTHASISFPTKTLQLPIRTSKLHHRRATFVRPLAAVEAPEKVVQLGDEISTLTLADAQKLVEYLQDKLGVSAASFAPAAVVAAPGGAAADAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="80917" PGL_stop="80201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80917" e_stop="80201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="80917" e_stop="80201" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80917" stop="80248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80517" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80500" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAAAAAACTTGATTTGAGAAAATTGAGTACAAGTATATCTAACAACTGAATTCTCTTGCGAAAACACAACTAAGAACGAACATTTACCACAAATTTGTTTAAGCAATAGAAACTTTAGCACCAGCTTCTTCAAGTTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCCAAACTTGTTAAAGCCCTAACAGCCTTAATGGTCGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACATCAAATTCCGTCTTCTCCTCAACCACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGAAGCGACGACGGCAGCGGGAGCGAAGGATGCGGCTGAAACTCCAAGCTTATCCTGAAGGTACTCGACGAGTTTCTGGGCATCAGCGAGGGTTAAGTTGGAGATTTCATCTCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGGCGGACGAGAGTTGCCCGGCGGTGGTACAGTTTGGGAGTGCGAATGGGAAGTTCTAGGGTTTTGGTGGGGAAGGAAATTGAAGCGTGCGTGGAGCTTGCGGTTGCTGGAGAAATAGGAGAGGGAGAACGAAGGGTAATTGTGGATAATGTGGAAGCCATTGTAGCTGAGCTAAAGAGAAATTGGGAGAGTGAAAGAGGGAGA</gDNA_template>
            <first_frame> T  E  K  T  *  F  E  K  I  E  Y  K  Y  I  *  Q  L  N  S  L  A  K  T  Q  L  R  T  N  I  Y  H  K  F  V  *  A  I  E  T  L  A  P  A  S  S  S  C  F  L  A  S  S  A  S  S  L  E  T  P  S  L  N  F  L  G  N  P  S  I  N  S  L  A  S  F  N  A  K  L  V  K  A  L  T  A  L  M  V  A  I  L  A  L  L  G  T  S  S  M  T  T  S  N  S  V  F  S  S  T  T  A  G  A  S  A  A  A  P  P  G  E  A  T  T  A  A  G  A  K  D  A  A  E  T  P  S  L  S  *  R  Y  S  T  S  F  W  A  S  A  R  V  K  L  E  I  S  S  P  S  W  T  T  F  S  G  A  S  T  A  A  R  G  R  T  R  V  A  R  R  W  Y  S  L  G  V  R  M  G  S  S  R  V  L  V  G  K  E  I  E  A  C  V  E  L  A  V  A  G  E  I  G  E  G  E  R  R  V  I  V  D  N  V  E  A  I  V  A  E  L  K  R  N  W  E  S  E  R  G  R </first_frame>
            <second_frame>  L  K  K  L  D  L  R  K  L  S  T  S  I  S  N  N  *  I  L  L  R  K  H  N  *  E  R  T  F  T  T  N  L  F  K  Q  *  K  L  *  H  Q  L  L  Q  V  V  S  *  H  L  Q  P  H  P  W  K  H  P  P  *  I  S  *  A  I  L  Q  S  I  P  *  P  L  S  M  P  N  L  L  K  P  *  Q  P  *  W  S  Q  F  *  H  Y  S  A  L  H  R  *  L  H  Q  I  P  S  S  P  Q  P  Q  L  E  H  L  R  L  R  H  Q  G  K  R  R  R  Q  R  E  R  R  M  R  L  K  L  Q  A  Y  P  E  G  T  R  R  V  S  G  H  Q  R  G  L  S  W  R  F  H  L  R  A  G  L  P  S  P  V  L  R  R  R  R  E  G  G  R  E  L  P  G  G  G  T  V  W  E  C  E  W  E  V  L  G  F  W  W  G  R  K  L  K  R  A  W  S  L  R  L  L  E  K  *  E  R  E  N  E  G  *  L  W  I  M  W  K  P  L  *  L  S  *  R  E  I  G  R  V  K  E  G   </second_frame>
            <third_frame>   *  K  N  L  I  *  E  N  *  V  Q  V  Y  L  T  T  E  F  S  C  E  N  T  T  K  N  E  H  L  P  Q  I  C  L  S  N  R  N  F  S  T  S  F  F  K  L  F  L  S  I  F  S  L  I  L  G  N  T  L  L  K  F  L  R  Q  S  F  N  Q  F  L  S  L  F  Q  C  Q  T  C  *  S  P  N  S  L  N  G  R  N  S  S  I  T  R  H  F  I  D  D  Y  I  K  F  R  L  L  L  N  H  S  W  S  I  C  G  C  A  T  R  G  S  D  D  G  S  G  S  E  G  C  G  *  N  S  K  L  I  L  K  V  L  D  E  F  L  G  I  S  E  G  *  V  G  D  F  I  S  E  L  D  Y  L  L  R  C  F  D  G  G  E  R  A  D  E  S  C  P  A  V  V  Q  F  G  S  A  N  G  K  F  *  G  F  G  G  E  G  N  *  S  V  R  G  A  C  G  C  W  R  N  R  R  G  R  T  K  G  N  C  G  *  C  G  S  H  C  S  *  A  K  E  K  L  G  E  *  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80619" stop="80287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQIPSSPQPQLEHLRLRHQGKRRRQRERRMRLKLQAYPEGTRRVSGHQRGLSWRFHLRAGLPSPVLRRRREGGRELPGGGTVWECEWEVLGFWWGRKLKRAWSLRLLEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80812" stop="80501"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIETLAPASSSCFLASSASSLETPSLNFLGNPSINSLASFNAKLVKALTALMVAILALLGTSSMTTSNSVFSSTTAGASAAAPPGEATTAAGAKDAAETPSLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80500" stop="80201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSTSFWASARVKLEISSPSWTTFSGASTAARGRTRVARRWYSLGVRMGSSRVLVGKEIEACVELAVAGEIGEGERRVIVDNVEAIVAELKRNWESERGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88595" PGL_stop="89049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88595" e_stop="89049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="88595" e_stop="89049" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88595" stop="89049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88595" stop="88963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGAGGACAAGAAGGAAGATCAAGTCATTGATGCAAATGACTTCAGCATACCCATTGAGGTTCCCATTCAGGGTCCATCAGAAGAAATTCCTAATTCTGGATCTTCAAAGTTTCCTATGACTGCCTGCGACAAGATTTATCAGAAGAGGAAGCAGAAAAGTGTGGCTGAACTTATGGGAGAGAACGCCAAGCCCAAAGGTAAGAAGACAACTGAAGACGATTCTACACCTTCGTCTGTAGAAACATCCGAGAAGAAAAGGAAGAAGTCTGGTGAGAAAGCTAAAGGTCAAACTGGCAGCTCGATGAGTGTTGATGAAAAAATTGGTAAGAGGGTCAACAAGAAGTCTGGTGACAGTGACTTGGTGAAAACAAAGAAACTTAGTGTTTCAATTCCTGAGAGTGATGAAGTTGGCAACCAGCAAGACAATGCGGGCCCTTTATCAAGGGAAAGAAA</gDNA_template>
            <first_frame> L  E  D  K  K  E  D  Q  V  I  D  A  N  D  F  S  I  P  I  E  V  P  I  Q  G  P  S  E  E  I  P  N  S  G  S  S  K  F  P  M  T  A  C  D  K  I  Y  Q  K  R  K  Q  K  S  V  A  E  L  M  G  E  N  A  K  P  K  G  K  K  T  T  E  D  D  S  T  P  S  S  V  E  T  S  E  K  K  R  K  K  S  G  E  K  A  K  G  Q  T  G  S  S  M  S  V  D  E  K  I  G  K  R  V  N  K  K  S  G  D  S  D  L  V  K  T  K  K  L  S  V  S  I  P  E  S  D  E  V  G  N  Q  Q  D  N  A  G  P  L  S  R  E  R   </first_frame>
            <second_frame>  S  R  T  R  R  K  I  K  S  L  M  Q  M  T  S  A  Y  P  L  R  F  P  F  R  V  H  Q  K  K  F  L  I  L  D  L  Q  S  F  L  *  L  P  A  T  R  F  I  R  R  G  S  R  K  V  W  L  N  L  W  E  R  T  P  S  P  K  V  R  R  Q  L  K  T  I  L  H  L  R  L  *  K  H  P  R  R  K  G  R  S  L  V  R  K  L  K  V  K  L  A  A  R  *  V  L  M  K  K  L  V  R  G  S  T  R  S  L  V  T  V  T  W  *  K  Q  R  N  L  V  F  Q  F  L  R  V  M  K  L  A  T  S  K  T  M  R  A  L  Y  Q  G  K  E  </second_frame>
            <third_frame>   R  G  Q  E  G  R  S  S  H  *  C  K  *  L  Q  H  T  H  *  G  S  H  S  G  S  I  R  R  N  S  *  F  W  I  F  K  V  S  Y  D  C  L  R  Q  D  L  S  E  E  E  A  E  K  C  G  *  T  Y  G  R  E  R  Q  A  Q  R  *  E  D  N  *  R  R  F  Y  T  F  V  C  R  N  I  R  E  E  K  E  E  V  W  *  E  S  *  R  S  N  W  Q  L  D  E  C  *  *  K  N  W  *  E  G  Q  Q  E  V  W  *  Q  *  L  G  E  N  K  E  T  *  C  F  N  S  *  E  *  *  S  W  Q  P  A  R  Q  C  G  P  F  I  K  G  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88595" stop="89047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEDKKEDQVIDANDFSIPIEVPIQGPSEEIPNSGSSKFPMTACDKIYQKRKQKSVAELMGENAKPKGKKTTEDDSTPSSVETSEKKRKKSGEKAKGQTGSSMSVDEKIGKRVNKKSGDSDLVKTKKLSVSIPESDEVGNQQDNAGPLSRER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 317 chains have been computed
$ 
$ memory statistics:
$ 522352 bytes spliced alignments in total
$ 204 spliced alignments have been stored
$ 2560 bytes was the average size of a spliced alignment
$ 23488 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 2135 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 350 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:19:11
-->
