<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:28:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569411" ref_strand="+" ref_description="SGN-U569411 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ataccgtgttatattctctctcttgaatattttatgaagcttgaagaagagatgcttacgctactctgcgttaaaatcaaccatgagtgcgatctttattgtttttaatctccctttcttcctcatcgacccaatctatgcaccagtgtaatctgaaccgtcatgatgaatatagaaattgtaccagataggagttttgaccgtaaaaattgagaatgtagttatcaagaatcagccattccaatattactagttgaattgtgggattatttcaatctaacaccgcgtaagtaagaatgtttggtgttcatttctatgatttcatttcagtgactgctcaaggttggtttttgtaattctggcaagatgtgctgacaacttactgtgtgagaggatgaggataagataagatctcgacaattgaatagaagaaaataatcttttcagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaaatattattgggaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="405" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="447" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="406" i_stop="1035" i_length="630">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1036" g_stop="1442" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="854" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U569411" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="405"/>
          <exon e_start="1036" e_stop="1442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGATGCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAGGTGTGTAGTAAAATTTTGAAGTAACACATATTGTCCACTATAGCCGTCAAAAGTATCCATCCAATATCATTTTTAGCAATGCACTTGCGATGGAAACTATGTTGCTTTTTGGGAAAGAAACTTTTATCACGACACACAAAAAAACAGAGACAAGGGTGGTGGTTAACTGATGATGCCCCACCAAATTGCTGACATAAGGATAAATTATAATGACAGGCCGTTTTCTAATTTCTTAGTTAATTATGCAAGTGGCTTAAAGGTCTTCCATCATGGTCATATTCTATTGTCATTTATCGTAAATATATATCCGCAAGTTTGCCATAATCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</genome_strand>
        <mrna_strand>GAAGAAGAGATGCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAAATATTATTGGGAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569410" ref_strand="+" ref_description="SGN-U569410 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>ggttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataataggtaattgatggacaactaccatacttctatgcccataagcaaaagcttattattatatatacatggtccctataggctactatacaaagatgattaaaaaaatgttttggatgaagatccattgttattttctgtctcattatgaatataatataagttaaaagagattcataagttgcacttggtgataaatataacaaatgacagtgacctagcttttccttatctcactgctaatttgtagaaactgtgaagattaatctggaacttgtactattaaagattgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="453" stop="2254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="752" g_stop="1954" g_length="1203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1203" r_length="1203" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U569410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="752" e_stop="1954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</genome_strand>
        <mrna_strand>GGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGGTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569412" ref_strand="+" ref_description="SGN-U569412 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|198400337|gb|ACH87177.1| (e_value=1e-25) hypothetical; (*ATH) AT2G17710.1 (e_value=2e-18) | Symbol: None | expressed protein | chr2:7700678-7701828 FORWARD | Aliases: T17A5.17, T17A5_17; ">
      <seq>gcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="477" stop="3016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="776" g_stop="1287" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="643" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="993" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U569412" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>993</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="776" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>GCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587505" ref_strand="-" ref_description="SGN-U587505 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|198400337|gb|ACH87177.1| (e_value=3e-17) hypothetical; ">
      <seq>gaaactgtgaagattattctgaactttgtactattacagattgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatgtacaaatagcatcccatctcctgatcgatagggggaaatacttatttttctcgaggataccttgtgaagtgtgatgtttgattgtgagaaagcatagaaaaaaatgatgattccattattatagtagttgatttggattccattatttcgaattaacttgcttacatattgttggttttgttaaggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1553" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1853" g_stop="2270" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2367" g_stop="2713" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="765" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U587505" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1853" e_stop="2270"/>
          <exon e_start="2367" e_stop="2713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTG</genome_strand>
        <mrna_strand>GAAACTGTGAAGATTATTCTGAACTTTGTACTATTACAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571903" ref_strand="+" ref_description="SGN-U571903 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|147800995|emb|CAN64470.1| (e_value=3e-124) hypothetical; (*ATH) AT5G66060.1 (e_value=4e-114)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus (GI:474940), Mus musculus (SP:Q60715), Homo sapiens (GI:18073925); contains PF03171 2OG-Fe(II) oxygenase super... ; (*SWP) sp|P54001|P4HA1_RAT (e_value=3e-30) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1; ">
      <seq>gggggtcatacagattacaacagaaagtctgcaaggataaatacattgttttaccgaaaataaataaataaacaaaatctgtgtttgattagtcaaaattttaaaacccactgtttccatttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaacaaaaaagatgtgagatgcttcattcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4208" stop="138866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4504" g_stop="4905" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="490" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="588" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="686" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6945" g_stop="7074" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="816" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7343" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="1004" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7524" g_stop="7610" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1091" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8143" g_stop="8344" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="1295" r_length="204" r_score="0.941"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8345" i_stop="8772" i_length="428">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8773" g_stop="8792" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1296" r_stop="1315" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U571903" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1313</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4504" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7074"/>
          <exon e_start="7156" e_stop="7343"/>
          <exon e_start="7524" e_stop="7610"/>
          <exon e_start="8143" e_stop="8344"/>
          <exon e_start="8773" e_stop="8792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTCATACAGATTACAACAGAAAGTCTGCAAGGATAAATACATTGTTTTACCGAAAATAAATAAATAAACAAAATCTGTGTTTGATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCGATTTCTGAGCAAGTTATAAGTAAAAGTAGCAAAATTGGTAAATTCACAAACATGGCAACGATACGTATTGTTATTCGGATGGTAAACACCTTTCGCCTCAAACTCTAAAAACAGAGGAAGGCTACACAACAATTGACTAATCAAATGAAATATGTGAGTTCCACTGATCATTATCAACATCATGCCAAGAAGGAACCTTTTTGAGATATTAACTTTTTGGTAGTACATTTTACTAGTTGGGAAGAATATTTCTAACTTACCTAAAAATCGTACGACAAGATTTAAATTTTAAATACGGGTTTTAAATTTCTTGACCCTAGTGCTTGCCTTTGGTGGTGTTTTACTTCTTAAACTAGCAGAATCGTGGGATATTAAAAATGATAAGTTGATTGTTGGTTTTTATTCCTTACTCTCGTTCTATTCTTAGGAAAAAATCCATTGAAAAGA</genome_strand>
        <mrna_strand>GGGGGTCATACAGATTACAACAGAAAGTCTGCAAGGATAAATACATTGTTTTACCGAAAATAAATAAATAAACAAAATCTGTGTTTGATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAACAAAAAAGATGTGAGATGCTTCATTC............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595277" ref_strand="+" ref_description="SGN-U595277 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15239240|ref|NP_201407.1| (e_value=1e-87) oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]; (*ATH) AT5G66060.1 (e_value=1e-89)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus (GI:474940), Mus musculus (SP:Q60715), Homo sapiens (GI:18073925); contains PF03171 2OG-Fe(II) oxygenase super... ; (*SWP) sp|P54001|P4HA1_RAT (e_value=2e-16) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1; ">
      <seq>aaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4428" stop="7643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4728" g_stop="4905" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="266" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="364" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="462" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6971" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6972" g_stop="7074" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="562" r_length="100" r_score="0.835"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7343" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="749" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U595277" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4728" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6972" e_stop="7074"/>
          <exon e_start="7156" e_stop="7343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG</genome_strand>
        <mrna_strand>AAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCA-AAT--TCTCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562622" ref_strand="+" ref_description="SGN-U562622 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157329910|emb|CAO42935.1| (e_value=1e-98) unnamed; (*ATH) AT2G17730.1 (e_value=4e-88)  Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) domain; similar to RING-H2 finger protein RHA3a (GI:3790573) (Arabidopsis thaliana); similar to ReMembR-H2 protein JR700... ; (*SWP) sp|Q8GT74|ATL2B_ARATH (e_value=4e-87) RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B; ">
      <seq>attgtcaacttgtcttagcaacgaagattactccttttgctgtatacaccttcttctctttgcctactcttatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="15920" stop="18257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16220" g_stop="16586" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="546" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="630" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="798" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17707" g_stop="17957" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="1049" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U562622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1049</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16220" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCAACTTGTCTTAGCAACGAAGATTACTCCTTTTGCTGTATACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>ATTGTCAACTTGTCTTAGCAACGAAGATTACTCCTTTTGCTGTATACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566560" ref_strand="+" ref_description="SGN-U566560 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157352341|emb|CAO43404.1| (e_value=2e-144) unnamed; (*ATH) AT3G09580.1 (e_value=6e-137)  Symbol: None | amine oxidase family protein, low similarity to SP:P28553 Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) from Glycine max; contains Pfam profile PF01593 amine oxidase, flavin-containing | chr3:2942509-2944083 REVE... ; ">
      <seq>gtccttcccgtttccgttcattctaaatgccgccgtgtctctgccttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtatttttcagctgaccaaggcaaagttccggtgcaggatccggttcttcttcttaacggatcgggtaaaggtatcgttaataacatgttcttcgcgaccaatgtggctccctcttatgctccggcagggaaggcactggtttctgtcacgcttgtggggctttatggtgatgtggcagatgaggatttggtggatcgggtcgtgaaggagctatcgggttggtttggggagtcggtagttgggtcatggggttacttgaggatgtacaggatcgggtttgcccaaccgaaccaatgcccacccactaacttgaagaagaacccgaaagtgaaaccgggcttgtacatttgtggagattatgtgactagcgctacttttgatggagctttagtttctgggaaaaaagcagcagaaactttgttacaagataaagctctggttattgtatagcttaattttggtttgagttttttttccacttgtgtaaaagtagaagttttgaatgttgttgatttatttgtatatggaatcataaacgtttcgagatcatttacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="19611" stop="21778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19911" g_stop="21478" g_length="1568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1568" r_length="1568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U566560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19911" e_stop="21478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTCCCGTTTCCGTTCATTCTAAATGCCGCCGTGTCTCTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGC</genome_strand>
        <mrna_strand>GTCCTTCCCGTTTCCGTTCATTCTAAATGCCGCCGTGTCTCTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586550" ref_strand="+" ref_description="SGN-U586550 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|118486583|gb|ABK95130.1| (e_value=0) unknown; (*ATH) AT5G66080.1 (e_value=5e-168)  Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); conta... ; (*SWP) sp|Q9LUS8|P2CH1_ARATH (e_value=2e-32) Probable protein phosphatase 2C homolog 1 OS=Arabidopsis thaliana GN=At3g16560; ">
      <seq>aaagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28780" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28480" g_stop="28154" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27358" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="742" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27187" g_stop="26820" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="1110" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1347" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25395" g_stop="24905" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1838" r_length="491" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U586550" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28480" e_stop="28154"/>
          <exon e_start="27772" e_stop="27358"/>
          <exon e_start="27187" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="24905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTT</genome_strand>
        <mrna_strand>AAAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586551" ref_strand="+" ref_description="SGN-U586551 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|4206122|gb|AAD11430.1| (e_value=1e-28) protein phosphatase 2C homolog [Mesembryanthemum crystallinum]; (*ATH) AT5G66080.1 (e_value=5e-28)  Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); conta... ; ">
      <seq>agggttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaagcaaaattatgtgtaccacgagcacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagcttattaggaaagtaactacattttctatattcattcttcagggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26354" stop="24728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26057" g_stop="25028" g_length="1030"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1030" r_length="1030" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U586551" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1030</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26057" e_stop="25028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTT</genome_strand>
        <mrna_strand>AGGGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAAGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602330" ref_strand="+" ref_description="SGN-U602330 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328854|emb|CAO23258.1| (e_value=4e-85) unnamed; (*ATH) AT4G35870.1 (e_value=1e-76) | Symbol: None | expressed protein | chr4:16990176-16992891 FORWARD | Aliases: F4B14.140, F4B14_140; ">
      <seq>gtacccattggaaaatcaagacattgatagtttggagaggcctctgattcatgaaaggagttcaactgtgattgctgacaacaatggatttttacacgatgcctctccaaatgaaattgatttccctggacaagatttgtctgaataccctccagtcagccgaacctcaccagttccaaagccgaagtttgattttgcacagtattatgctttcaatctgacaatatttgccctaaccctgatctattgttcgtttgctcctctggtggttcctgttggtgcagtttactttgggtaccggtatttagttgacaagtacaacttcctgtttgtatacagagtgcgaggtttccctgctggtaatgatgggaggttgatggatactgtattatctatcatgaggttttgtgttgacttgttcctcctttcaatgctacttttcttttctgtacgaggagactcaactaagcttcaagccatattcacacttggattgttagtggtgtataaactcttgccctctgataaggattcttttcagccagcgttattacaaggcatacagactattgataacattgtcgaagggccaactgattatgaggttttctcacaacctacatttgattgggatacgtataattcatgacttgtgaataaaaccaaagatttgtgttgacattttgtatatattcttattttgttacggaagtgttcctgcatctatcagatctctctcctcttttcttggttcatccttttggtggttggaaacagatatttggcttangaccacaagagcacatgttataatgtctaacgggttccactgtagtagcacagtctgtatttctacgatcaggtcttgaccaatctacagagtgaatagatgttgtttgtttaccctcacatctgctcaagtgcctttctcgaaggagtagagtttcaatgatgtttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="37758" stop="39320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38058" g_stop="39020" g_length="963"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="962" r_length="962" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U602330" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38058" e_stop="39020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTCAAGTGCCTTTCTCGAAGGAGTAGAGTTTTCATTGATGTTTGCCTT</genome_strand>
        <mrna_strand>GTACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGATAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTANGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCCTCACATCTGCTCAAGTGCCTTTCTCGAAGGAGTAGAG-TTTCAATGATGTTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574864" ref_strand="+" ref_description="SGN-U574864 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|42567433|ref|NP_195313.2| (e_value=6e-44) aspartyl protease family protein [Arabidopsis thaliana]; (*ATH) AT4G35880.1 (e_value=5e-46) | Symbol: None | aspartyl protease family protein, contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141 | chr4:16993342-16995821 FORWARD | Aliases: F4B14.150, F4B14_150; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=1e-11) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080; ">
      <seq>gcctttacctatcttgcggacctatcctatacaaagctttcagaaagtttccattctcaagtacgagacaagcggcgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgaaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatccaattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacagaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgatattgagaaaatagaccatttcccatcacaacctgttaataccacccatgttccacctgcctttgctgttgtgcctggaaatgataatgcagagaaatcacatgaaaggacgacaactactcgtcaaagttcttttgcatcatctgtttatcaaacatgttatttgaacctcataaactgcttcctagcatctgtgatattgctacttttataattgctaccataagctcattctcacactgaggattcaggttgtttttgatggaccctccaaacaaatcactattttgtgacgtagcataacatttgagaatataggatgttngcatttctgttatactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="44384" stop="47877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44683" g_stop="44730" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44814" g_stop="44887" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="122" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44979" g_stop="45078" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="222" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45172" g_stop="45229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="280" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46360" g_stop="46431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="352" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46526" g_stop="46783" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="610" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46784" i_stop="47481" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47482" g_stop="47577" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="703" r_length="93" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U574864" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44683" e_stop="44730"/>
          <exon e_start="44814" e_stop="44887"/>
          <exon e_start="44979" e_stop="45078"/>
          <exon e_start="45172" e_stop="45229"/>
          <exon e_start="46360" e_stop="46431"/>
          <exon e_start="46526" e_stop="46783"/>
          <exon e_start="47482" e_stop="47577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTACCAAAGAATGAAATCAGAATCGATACGACTCTCCACCCGATTTTTTTGTACTTGCAACCCCTTTTTTTTTTCTTTTTTGGTTGTTGTCGTTTTTCATGCTGCCAGCAAGGTTCTTTTTTCACATTTGGTCAATTATTTGGAATATTTTGTGGTTAGGTTGTCTACTTTAAAATAGATTTCGATCTCATGTAATTGTACAAGTAGGGTCTTGAAAAAGTCTAAATGTATCTAATTTCTGTAGGTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACC</genome_strand>
        <mrna_strand>GCCTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTTTGATGGACCCTCCAAAC-AAATCACTATTTTGTGACGTAGCATAACATTTGAGAAT-ATAGGATGTTNGCATTTCTGTT-ATACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597073" ref_strand="+" ref_description="SGN-U597073 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcacacttccaaaaatccactactatattatatataaaaataaaataaaagagagtccataatgttaatcatcgccaaagctaaggttgattcgagatttgaagttagtagagacgtaaatgcagttattgattcaagcctaaggtagtagatatgttttagctgtggctgtggaacgaggtggcactgtacaatctcactgttctattgcaatcataaggcacaacagcaaaggcaggtggaacatgggtggtattaacaggttgtgatgggaaatggtctattttctcaatatcataacctgcatgaaggccacaagaccaaaagtatgaaaagaataatcttcttgtaatatctaagttattggaagaaagaacaccaaaaacaatactcacaatcaaatttcttccaaccgaggatgattttttctcgatcaaacacaaagcggtatccagtcatgaagttctctggaaaaagatcagtaagagcaacaacagtcagatatcacaatttggaaatgactagtacaattttttagctgccagctaaaagtaaggtgatatacaaccaaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="47466" stop="45949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47167" g_stop="46948" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46947" i_stop="46607" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46606" g_stop="46249" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="578" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U597073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47167" e_stop="46948"/>
          <exon e_start="46606" e_stop="46249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAGGTACATAAACTATCATAGTGTAATGTATTAACATTTCTATACATTATATGGTTAGCCTCAAAATCAGATATGAGCAGGCAAACCAAAAATTTCTGTCCATATTGGAGCTCTGCAAGTATGATTATCTGCACTATATATGTGTTAAAAAGTCCTAAGAAGCATACCTGAATCCTCAGTGTGAGAATGAGCTTATGGTAGCAATTATAAAAGTAGCAATATCACAGATGCTAGGAAGCAGTTTATGAGGTTCAAATAACATGTTTGATAAACAGATGATGCAAAAGAACTTTGACGAGTAGTTGTCGTCCTTTCATGTGATTTCTCTGCATTATCATTTCCAGGCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAGCTGCCAGCTAAAAGTAAGGTGATATACAACCAAAACTTTT</genome_strand>
        <mrna_strand>GCACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG.....................................................................................................................................................................................................................................................................................................................................................GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAGCTGCCAGCTAAAAGTAAGGTGATATACAACCAAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574299" ref_strand="+" ref_description="SGN-U574299 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|30680102|ref|NP_849967.1| (e_value=1e-155) chloroplast nucleoid DNA-binding protein -related [Arabidopsis thaliana]; (*ATH) AT2G17760.1 (e_value=6e-158) | Symbol: None | aspartyl protease family protein, contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141 | chr2:7720396-7723546 FORWARD | Aliases: T17A5.8, T17A5_8; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=5e-77) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080; ">
      <seq>actttcttccaccattttaccctcttctaaaaaactacaaatggaagcaatgcttagcttcttcagcttcagacttgtcaacccatttttttttcctttctcaaaatccccttttatctcctcaccttttctctttctttctccctgtatatctatatatcaacatacaaagaatcagtcttttttgtttttccttatacaaacatgcctaattctggtaaaattcgtaattttttccttgccccaattattttcttggcgattcttggataccagttgaagacaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgtcgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatataatacatttcgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="50584" stop="55273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50884" g_stop="51401" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51951" g_stop="52086" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="654" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52698" g_stop="52933" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="890" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53165" g_stop="53389" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1115" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53484" g_stop="53619" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1251" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1325" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1326" r_stop="1425" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1426" r_stop="1486" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1487" r_stop="1558" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54536" g_stop="54973" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1559" r_stop="1996" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U574299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1996</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50884" e_stop="51401"/>
          <exon e_start="51951" e_stop="52086"/>
          <exon e_start="52698" e_stop="52933"/>
          <exon e_start="53165" e_stop="53389"/>
          <exon e_start="53484" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTTCCACCATTTTACCCTCTTCTAAAAAACTACAAATGGAAGCAATGCTTAGCTTCTTCAGCTTCAGACTTGTCAACCCATTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATT</genome_strand>
        <mrna_strand>ACTTTCTTCCACCATTTTACCCTCTTCTAAAAAACTACAAATGGAAGCAATGCTTAGCTTCTTCAGCTTCAGACTTGTCAACCCATTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596596" ref_strand="+" ref_description="SGN-U596596 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aatgacccttttgtattatattgaatcttgaacggaaaaaggagagccttttatcagagttatatttacaatacatatatcaggtataaactgcaatatcaaaaaagctgtgggacacttctcttctatgctgtaacagaactcaatattatacagaggacaaataaaagcctcaagaagaaataataatcaaataatagttgaaaaaggaataatatagccataataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="55262" stop="54443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54973" g_stop="54743" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U596596" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54973" e_stop="54743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACGAAATGTATTATATTGAATCTTGAACGGAAAAAGGACAGAAAGAAATCAGAGTTATATTTACAATACATATATCAGGTATAAACTGCAATATCAAAAATGCTGTGGGACACTTCAATTCTATGCTGTAACAGAACTCAATATTATACAGAGGACAAATAAAAGCCTCAAGAAGAAATAATAATCAAATAATAGTTGAAAAAGGAA-AATATAGCCATCATAAGTT</genome_strand>
        <mrna_strand>AATGACCCTTTTGTATTATATTGAATCTTGAACGGAAAAAGGAGAGCCTTTTATCAGAGTTATATTTACAATACATATATCAGGTATAAACTGCAATATCAAAAAAGCTGTGGGACACTTCTCTTCTATGCTGTAACAGAACTCAATATTATACAGAGGACAAATAAAAGCCTCAAGAAGAAATAATAATCAAATAATAGTTGAAAAAGGAATAATATAGCCATAATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565307" ref_strand="+" ref_description="SGN-U565307 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157328856|emb|CAO23260.1| (e_value=6e-94) unnamed; (*ATH) AT3G01160.1 (e_value=1e-86) | Symbol: None | expressed protein | chr3:54548-57469 REVERSE | Aliases: T4P13.15, T4P13_15; (*SWP) sp|Q76MT4|ESF1_RAT (e_value=4e-32) ESF1 homolog OS=Rattus norvegicus GN=Esf1; ">
      <seq>gggttttagggttttagagagaagaagaacgtattcatggagtcaaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaaaaagatgatgatgagatggacaatgagaaattacgcgcctatgagatgagtcggctcaggtattattatgctgtggtggaatgcgattcaagtgctacagctgattatctttacaaaacttgtgatgggggttgagtttgagagaacatcaaacaaattagatttgaggtttattccagattccatggaattcaagcatcaaccacgtgacattgcaacagaggcccctgcagattatgaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattagacagacgaggttcctgaaaatggatcatggttcagtatgggtgaatagtggccttagtgaatctcaatacgtagcaactttaattgtttttactttattttttactgtatggcctatatttatggttgcatcattgttttgctgtcttaacttgcagagatgtacgttgtaccatgttcaatttttttttttttacagtagtcgactgtaaacttaatgtaattcctctatactcgtcttgagattcacaatacagcgacttctgttctgattattgagctgaagtttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="60217" stop="54929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59917" g_stop="59470" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59469" i_stop="57887" i_length="1583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57886" g_stop="57820" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="515" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57819" i_stop="57599" i_length="221">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57598" g_stop="57436" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="679" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57435" i_stop="57318" i_length="118">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57317" g_stop="57189" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="808" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56763" g_stop="56060" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="1512" r_length="704" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55925" g_stop="55229" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1513" r_stop="2209" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U565307" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59917" e_stop="59470"/>
          <exon e_start="57886" e_stop="57820"/>
          <exon e_start="57598" e_stop="57436"/>
          <exon e_start="57317" e_stop="57189"/>
          <exon e_start="56763" e_stop="56060"/>
          <exon e_start="55925" e_stop="55229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAGGTATACAATGAAAAAGACAGCATTTTTGTTGGGTATGATGTTTGAATTTATGGCTTTTAATTATTTTGCAATTTTTTTTGTTTTGGTCTGAATCAGAAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAAAGGTTAGTTTTTTTTTTCTTTTCCAATATGGATTAATTGAATGATCCCTAGAAAGGTGTCAAATTTTGGAAATTTTGTCCTTCGATATGGTAAAATTATAATTGTTTTACATTAACTGTACTATAATTTATAATTGCTTAAACCAACTCTATCAAGATGAATTTGGCCCTGCAGGCGGTTGAATTGGTTGGAATGAGAATATTCAGTTCAGTTTGACCGTTACTGGCCTTGTCTAAATGTTTCATATAACTTTGGAATAACAGTTTGAGCATTTCTGGACACTGGATTAAATTGTTAAGAGATTGTGCCGAGCATTCAATTTTGAAAATAGAAATAGTTGTGGAAAGGTGCTACCTATAAAAAAAAGTTATGCACTGGTGTATTGTGGTGAAGTATTCCTTAGCTTTGAAGTTGAGTTGCAGGCAAAAATAATAGAAATGGTAGTCAGTGTATACGGGAGGCTATCTATGGGTTCATGCATTTGTCTATAATATATGATAGTGTTGGGCGTTGTCTATCATTCATCATACCCTACCGTGGTCATAATGTGGATTGCACCTCGATTCAAACTTATAAGGGGTCACTTGGTTTGTAATATAGATTTCTTAACTACTGAAGTGATCTATAGAATGTTGCTGGTAGATACCTCTGCATAGCTAATATTGTTTAGTTTTCGCTTTTCAGTGTTAAGCTCTGCACTCCTTTAAAGCAAAATTTATGTGAAATGTATATATTGTTTACGCTGCATAATGTGAAATAATGAAATATTTAGTAGTAATGCATGAATCAGAACAGAAGACAAATAAATCCCTTGGAGTATGGAATCCCTGTATAATTTATATTTCACTGCACCTTACATTATTCTTTACTTTATAACAAACCTGACACTGTTATTAAAACCCTTTATTATATTCCATAAATAGCCATTAACCAAACTATGCCTTGATGTATTTAACTTCTATAGAACGATTAAATTCTTTTCTCAGCAAGCTGTTATGCTATGTAGGCAGTTGACTTGTATATGCTATTGAGCTCCTTTCTCCCAAGAGGGGGTCAAATAACATCTGTTGCTGTCTATCCATCTGACTTTGGTCTCAAGCGTATGGAAGAGGAGGCTGTCCATGGTCCAGTTGGCCTATTTGACGAGGAAAAGGCAAAAGATGAAGACAGTGATGATGATGAAGAAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAGGTGATGATTTGGTTCTGTGTTTTTTCTGGGTAATGTATCTTTAAGTGATTCTTGCATTTTTTGCCGACTAAAAATGATAACTTGTTGATAAACCTTTATGAAATTTATTTGGTTCCTCTTCTTTTTTTACCCTTATGCTACTCCATTCTGTGTTTATTAATTCCCCGTCCTTCATTATGTATAGGTCTCTTTTCAAAGATACTTTCTTATGTACTTCGCAGGTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGAT-GGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAGGTAATTTGTGGCTACGATTTCTCATCATAGGAGCCTTTAGTTTTAACGGTTATTATTGGCTGAAAACATAAAATCTAATTGTATTTGTGTTCGATTGTTATATTCTTCTGGTACTTAGGCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTG</genome_strand>
        <mrna_strand>GGGTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG.............................................................................................................................................................................................................................GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG......................................................................................................................GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595932" ref_strand="+" ref_description="SGN-U595932 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>accccgnanatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaagaanaagaagagaccaagagtgacagtgggacgagtgaggaagaaattgaagaccataaattgaagaaagttggcgccgtatcatcagagtccgaagaagatgaagatgaagaggtgggaagtgataattcactggcaagtacgtccgattccgcttcggattctgattctgatgatgaaatggacgaagtttcttcagangangaagacactttcnttcngaaagaggangtgcctgagattgacaaggaaactannaggcttgctgttgttaacatngnttggggnagagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="59915" stop="58771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59615" g_stop="59240" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59239" i_stop="59144" i_length="96">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59143" g_stop="59071" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="449" r_length="73" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U595932" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59615" e_stop="59240"/>
          <exon e_start="59143" e_stop="59071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAGGTATACAATGAAAAAGACAGCATTTTTGTTGGGTATGATGTTTGAATTTATGGCTTTTAATTATTTTGCAATTTTTTTTGTTTTGGTCTGAATCAGAAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAA</genome_strand>
        <mrna_strand>ACCCCGNANATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAANAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGANGANGAAGACACTTTCNTTCNG................................................................................................AAAGAGGANGTGCCTGAGATTGACAAGGAAACTANNAGGCTTGCTGTTGTTAACATNGNTTGGGGNAGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595914" ref_strand="+" ref_description="SGN-U595914 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118487601|gb|ABK95626.1| (e_value=1e-54) unknown; (*ATH) AT5G42180.1 (e_value=7e-53) | Symbol: None | peroxidase 64 (PER64) (P64) (PRXR4), identical to SP:Q43872 Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis thaliana} | chr5:16869860-16871448 FORWARD | Aliases: MJC20.29, MJC20_29; (*SWP) sp|Q43872|PER64_ARATH (e_value=5e-52) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64; ">
      <seq>gtgttccattattgagcacatttatttttttctccatctactattctcaaagcaatgcacttagttccaattactatgcaaaaacatgccctcaagctgaagacatagtaatgaaggttgttaaggaggaagcacagaaagacagaacagtgcccgctacacttctaaggatgcatttccatgattgtttcctacggggttgtgatgcttctattttgttgagctccaaggggaaaaacaccgcggaaaaggacgcgcctcctaatggttctttgcacggattctatgttattgatggtgcaaagagagcagttgaagctatatgtcctggcgtagtgtcttgtgctgatattttagcgtttgctgcaagagatgcagttgtgttatcaggcggaccttactggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="64200" stop="65455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64499" g_stop="64695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64696" i_stop="64769" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64770" g_stop="64958" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="386" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64959" i_stop="65081" i_length="123">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65082" g_stop="65155" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="460" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U595914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64499" e_stop="64695"/>
          <exon e_start="64770" e_stop="64958"/>
          <exon e_start="65082" e_stop="65155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGGGTAAATAAGCATCTTCGCTAAGCATATTAGTTATTTTTACTGTACTTACTTCCTCTGTTCTACCTTGCTTGAAGGGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTAGTAAGTACATATCCCCTGCAAAAGTTATATACTGAACATCTCTCTCGTGTTTGGATGATGTGGATTTGCATAGAGTGTAATAAATACTATATTGTATAAGCTTATTACTAGTTGTTTTTTCAGTCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</genome_strand>
        <mrna_strand>GTGTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG..........................................................................GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA...........................................................................................................................TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595916" ref_strand="+" ref_description="SGN-U595916 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328857|emb|CAO23261.1| (e_value=2e-74) unnamed; (*ATH) AT5G42180.1 (e_value=3e-60) | Symbol: None | peroxidase 64 (PER64) (P64) (PRXR4), identical to SP:Q43872 Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis thaliana} | chr5:16869860-16871448 FORWARD | Aliases: MJC20.29, MJC20_29; (*SWP) sp|Q43872|PER64_ARATH (e_value=2e-59) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64; ">
      <seq>ctggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacactgcttccaaagcctacattcaacatttctcaactccaacaaagcttccatcaaagaggtctctcactagacgacttggtggctctcttaggtgcgcacactctaggatttacccattgctcatcatttatgaaccgtatatacaacttcaacgccacacatgacatcgatcctacactacgtccatcgtttgcagcaagcttgaagggcatatgtccactcaaaaacagggcaaaaaacgcaggaataagcaatgatccttcaccaacaacatttgataatactcattacaggctaattctacaaaagaaaagtttgttattttcggatcattcattgctcactataccaaaaacgaagagcttagtttataagtttgctacctcaaaagcagcttttcataaggcattttctaattctatgattaagatgagtagccttacaggaggtcaagaagttagaaaaaattgcagggttgtaaactaattaattattattaattctaatttgatatttttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="64796" stop="66058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65096" g_stop="65244" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65245" i_stop="65327" i_length="83">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65328" g_stop="65758" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="580" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U595916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65096" e_stop="65244"/>
          <exon e_start="65328" e_stop="65758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAGGTCAGCACCAAACTTGATTTCTTAAAAATGGTCACTCAACTTACATCTGATACGACGATACATTTCTTCTCTCTGGCTTGCAGGTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGT</genome_strand>
        <mrna_strand>CTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG...................................................................................GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567423" ref_strand="+" ref_description="SGN-U567423 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157328859|emb|CAO23263.1| (e_value=2e-53) unnamed; (*ATH) AT5G66090.1 (e_value=2e-46) | Symbol: None | expressed protein | chr5:26442962-26444394 FORWARD | Aliases: K2A18.17, K2A18_17; ">
      <seq>agaaaactgaaagaagagactcatttagatagactaattttaagaaaatcctaaaatggcaccaatttgtaaccttttgttatctagaatttagttttaaaactatttttccaagaaattttgtgattaggcccgactcgaaatcgtgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaaagccagtggtgctcggttttaggatcagggatattaaccctttgatactgttctctaattcattgaccatgaaatcaagttttacatttgtggtaagtggtaatagaacagaacaaacaagctggttcattgctatttgcttcttaatcatgtggagaagatatgaatatgttgtttactctttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67115" stop="71190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67415" g_stop="67818" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="581" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="659" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70890" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="1061" r_length="402" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U567423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1060</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67415" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACTGAAAGAAGAGACTCATTTAGATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAG-AGATATGAATATGTTGTTTACTCTTTGAAGT</genome_strand>
        <mrna_strand>AGAAAACTGAAAGAAGAGACTCATTTAGATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCCTTTGATACTGTTCTCTAATTCATTGACCATGAAATCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAAGATATGAATATGTTGTTTACTCTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604580" ref_strand="+" ref_description="SGN-U604580 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15236267|ref|NP_195236.1| (e_value=4e-87) aquaporin, putative [Arabidopsis thaliana]; (*ATH) AT4G35100.1 (e_value=3e-89) | Symbol: None | plasma membrane intrinsic protein (SIMIP), nearly identical to plasma membrane intrinsic protein (Arabidopsis thaliana) GI:2306917 | chr4:16708628-16710253 FORWARD | Aliases: T12J5.9; (*SWP) sp|P93004|PIP27_ARATH (e_value=3e-88) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7; ">
      <seq>gcactaataataagatatggtgaaagactacgttgatccaccttcagctccgctgtttcaaacagcggagctctacaactggtctttttacagagccttgattgctgaatttgtcgcgacgcttcttttcctctacgttagcgtggctactgttatcggccacaagaagcaacttggtccctgcgatggcgttggacttgttggtattgcatgggcttttggtggcatgatttttgttctcgtgtattccactgctgggatttctggtgggcatataaacccggcagtgacgtttgggttattactagcaaggaatgtgtcattactaagagcggtggcgtatatggtggcgcagtgcttaggagccatttgcggcgttggtttagtgaaaggtgtgatgaaggatgattatacgaagcatggtggcggtgctaataccgtcgcagttggctactcagcgggcgcagcattaggtgctgagattattgctactttccttctcatgtataccgtattttccgccaccgacgccaaaaggaaagcacgtgattcacacgtcccagttctagcaccattgccaattggatttcctcagtggttatggtgcacttggccaccattccccatcattggcactgggcattcaatccttgctaggattttcggagctgctgtcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="73551" stop="71165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73252" g_stop="72987" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72986" i_stop="72918" i_length="69">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72917" g_stop="72622" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="562" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72621" i_stop="71577" i_length="1045">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71576" g_stop="71465" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="680" r_length="118" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U604580" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73252" e_stop="72987"/>
          <exon e_start="72917" e_stop="72622"/>
          <exon e_start="71576" e_stop="71465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTGGTACGTAGAATTTAAACACTTTAAATATAAACAACGATTTATGAATAAAAATGTACGTATAATATATAGGTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCAGTAAGTCTCATCCATACTCATATTCATATCACACACTTTTACTTCGTTTCCAAAAATAATTATACACTACTGAATTTGGAAACATCAATGGTATAAAATGTTTAACCCTGCAAGTTTTCAAATGCGTAGAAAAGTTGGGACTACTCAAGGATTACAAATTTCCCAAGTCTTGATTTCTTCTATTAATTATATATATTACATGTCATTCGAATTATATGTAACTTCACAAGAGTTACCATAGTTTAAATTAAAATACATTGATTTATAAAATTTATTCCTATGTATAAATTAGAAACATATATTTATTTATATTTGTCATGTTGCACTTTTCGAAAGTCAATTCGATTAACTTTTAAAGATTACATTAGTTTTGTTATGCTTTTCGAAAGAAAGTTAATTCAATTAATTTTCAAAGTTAACTTAAATTACATTAGTTTTGTTACGCTTTTCAAAAGTCAATTCGATTAATTTTCAAATTTAACTTAGATTACATTAGTTTGATATTTTAAACAAAAAATTTAGATATTCAAAAATTATATATATATTTTGCATATTAATATTATTAAAAAATATATCTTAAAATGTTAGTCAAAATTCTTATAATTTGACTTTAAAAATAGAAACCATGACAAATAAGTGGACAAACTTAGAATCTATTTTTATATATTTACCAACTTTGTTTGATTCTTTTATAAAATGTTTTAAGTCTTATACACAGCAAGAAAATATCAAGTGTGTAAATTTTAGAGAACAAGGCTTAAAATCCTAACAGAAACAAAATAAACCAAGTGTTGACGGGTAGAGTTACCTAATAGTGATATGATGGAAGGAACCAAATGCAGAAATTGACCTGGGCACCACGATATAAAATTGACATATTTACGCATACAACCCCTATAATATTCATAACTGTTGAAAACTATGGATGTAACACTAACAAGACATAATTGAAAAAAAAGGAAGAGAGTGTTGAGAGATTGATATGGATGGGGATACTTACGAAGTCCAGTAAAAGAAAAGATGTTCATCGTTTGTGCACCCACAGGTTCTAGCACCATTGCCAATTGGA-TT-CTCAGTGTTTATGGTGCACTTGGCCACCATT-CCCATCACTGGCACT-GGCA-TCAATCC-TGCTAGGAGTTTCGGAGCTGCTGTCATTT</genome_strand>
        <mrna_strand>GCACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG.....................................................................GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAATGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAGCGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGCACCATTGCCAATTGGATTTCCTCAGTGGTTATGGTGCACTTGGCCACCATTCCCCATCATTGGCACTGGGCATTCAATCCTTGCTAGGATTTTCGGAGCTGCTGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564495" ref_strand="+" ref_description="SGN-U564495 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|119552395|gb|ABL84199.1| (e_value=5e-86) self-pruning; (*ATH) AT3G56850.1 (e_value=2e-16) | Symbol: None | ABA-responsive element-binding protein 3 (AREB3), identical to ABA-responsive element binding protein 3 (AREB3) (Arabidopsis thaliana) GI:9967421 | chr3:21057320-21059495 REVERSE | Aliases: T8M16.180; (*SWP) sp|Q84JK2|FD_ARATH (e_value=2e-28) Protein FD OS=Arabidopsis thaliana GN=FD; ">
      <seq>gagggtacattctccctcactatttttttcttttttcaagaatccaattatgtggtcatcaagcagtgataacaggggactctctgcttcttcttcttcatcttcatcctcatctcattcaccattttctccaagactcaaaacaatggaagaagtgtggaaagatattaatctttcttcacttcaagatcacactacgaattactctagagatcatcatcatcttcatgatcataatcatcaagctgctaattttggtggaatgattttacaagattttttggcaaggccttttgctaatgaatcttcaccagcagcagcagcagcagcagcctcccctgtttcagctacaactatgctgaatttgaactctgttcctgagcttcatttctttgataacccattgaggcaaaactcaatcttgcaccaaccaaatgcaagtggaagaaaaagggttgtccctgaaacagaagacaattctacaggggatagaagaaatcagaggatgatcaagaacagagagtctgctgctagatcaagagctagaaagcaggcttatatgaacgagttggaatcagaagtggcacatttagttgaagaaaatgcaaggctcaagaagcagcagcaacagttacgagtagatgcagctaatcaagttcccaaaaagaacactctttatcggacgtcaactgctccattttgagatcttattataatttggtttcctagtgctacattagtattaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="79935" stop="81512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80234" g_stop="80785" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80786" i_stop="80914" i_length="129">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80915" g_stop="80992" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="631" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80993" i_stop="81095" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81096" g_stop="81212" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="748" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U564495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80234" e_stop="80785"/>
          <exon e_start="80915" e_stop="80992"/>
          <exon e_start="81096" e_stop="81212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTACATTC-CCCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAGGTAAGTGACACTCAACTTTGTCTTAATCCTGTCAATTTTGTGCTTATACATCAACTATGTTCCATATTGTTACTCTTTTGCTGCTTCTATTCTTGATTTGAACAATATGCCGAGTTACTCTGTTTGCAGGCTTATATGAACGAGTTGGAATCAGAAGTGGCACATTTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGGTTCTCTTATCTTTCTTTATTTCTGTCACTTTTAAAATTCAGTTTATAAAAAAAATGGATATAACTGATTCATAATAAATTGGTGTTTTCTTAATTTGTACAGTTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAACTGCTCCATTTTGAGATCTTATTATAATTTGGTTTCCTAGTGCTACATTAGTATTAAGA</genome_strand>
        <mrna_strand>GAGGGTACATTCTCCCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAG.................................................................................................................................GCTTATATGAACGAGTTGGAATCAGAAGTGGCACATTTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAG.......................................................................................................TTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAACTGCTCCATTTTGAGATCTTATTATAATTTGGTTTCCTAGTGCTACATTAGTATTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565830" ref_strand="+" ref_description="SGN-U565830 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157329971|emb|CAO43166.1| (e_value=5e-165) unnamed; (*ATH) AT4G35920.3 (e_value=5e-148) | Symbol: None | expressed protein, contains Pfam profile PF04749: Protein of unknown function, DUF614; isoform contains AT-acceptor splice site at intron 8 | chr4:17011791-17014821 REVERSE | Aliases: None; ">
      <seq>gggggtaaacagtgtagataacggagctcccagacaacagacaccgaagagaaacgtttagcttagcttgaaaggaatgctgaaaggactgcgggattgcggtggagtacagtgaggttaacggcgtcaccgttaattcagctgaaataccgatagctgcacttctatttcaacgggatctgttggaagcaattctttggggtgcattctggttacatatgatgcttttgagtgtattttgatggtactgcatgtctgcgacattgactggaacttgaatctgatgaatgatgcattatggaagttctatagaagtctatattgagtcggcaatgttgttttctccgagttttacctaatgaattcaacttgcttgattaaaagagctggtggagacagcttgatttttttgttaaaagtttagagcgagttgctgtttttatactggccctcctgctgatctgtgcttgttattgaattgaaatttagagagagtttcgtgtgaataatctaggatttacttatggcgtcattggaccattttggggatattgcaaatattgcacagcttactggaatcgatgcggtgaggctaattgggatgattgtgaaagctgctgctacagctcggatgcacaagaagaattgcaggcagtttgcacagcatctcaagctaattggaaatttattggagcagctcaagattactgaacttaagaggtatccggaaacccgagagccattggaacatcttgaagatgcattgaggaggtcttatttattggtcaacagctgtcaggacaggagctacctttatctgttggctatggggtggaacattgtataccagtttcgtagggctcagaacgagattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggaggttgaagacatgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaagaaaatgagaaactccaactagaactacagcgctcgcaagctaatttagatgtaggtcagtgtgaattcattcagcatcttctggatgtcacagaagtagttgccaataactctctatcattgaagagttcacctgccaaacctctcaaaaagttggatcagagttactcgaatgttgatactgagaaggtatattatgacgattatgctaaaagtgatgagaaacagacaacttcaagaaacacttcatcagttacatcaagacatgacctgctttcctcaaagggttcacatcaatatgaagagtggcattcagatctgctgggctgctgttcagaacctctcttatgtattaaaacccttttctttccttgtggtacattttctagaattgccagtgttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgttacacatgttgcatcagaaagaagcttcggaaaaagctaaacatcaagggaggttgtgttgatgattttctttctcatttgatgtgctgttgctgtgctcttgtccaagaattgcgcgaagtcaagatacgtgggacacatggtatagagaagacgaaaataagccctccaaccactcaattcatggaatcctaggaagctaaacctggcttttttagcacaaaatatcagaaagcactatatggaggttcggtgtgtataattgacccagagttgttcattcgtttacatggttactggtgactatacatgtatgtgatgtaagaatctgttctatgtggtgtacatgcaggaatattatggtgtaactatggatgaatatcatgacgtattttttgtgaaaataaaagataacaactactaggttgttgcagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="96194" stop="89781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95898" g_stop="95844" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95491" g_stop="95406" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="141" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95239" g_stop="94450" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="931" r_length="790" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92567" g_stop="92155" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="932" r_stop="1344" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92021" g_stop="91912" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1454" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91722" g_stop="91651" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1455" r_stop="1526" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90962" g_stop="90856" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1527" r_stop="1633" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90754" g_stop="90661" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1634" r_stop="1727" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90464" g_stop="90360" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1728" r_stop="1832" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="90271" g_stop="90081" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1833" r_stop="2023" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U565830" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2023</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95898" e_stop="95844"/>
          <exon e_start="95491" e_stop="95406"/>
          <exon e_start="95239" e_stop="94450"/>
          <exon e_start="92567" e_stop="92155"/>
          <exon e_start="92021" e_stop="91912"/>
          <exon e_start="91722" e_stop="91651"/>
          <exon e_start="90962" e_stop="90856"/>
          <exon e_start="90754" e_stop="90661"/>
          <exon e_start="90464" e_stop="90360"/>
          <exon e_start="90271" e_stop="90081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTAAACAGTGTAGATAACGGAGCTCCCAGACAACAGACACCGAAGAGAAACGTGAGTCGTCTTTATCTCTCTCTTCTCTGGTTCACGGAGAAAACAGTTTTTGGGAACTAAAAATTGTCCAAAACTGAAGCTTCTTCTCGCAAACTTATGACTGTAAATCACAGAAAACTATGTCCATTTCCTCTCGATTTTCAGTTCGTAGGAAATTGCATTAACAATTTTATTAGTACTAGTCTGTGTCGTTACCCAAAAAACTGGATTTTAAGTGATTTCAGTAGAAAAACTTGTACATTCGCATAAATCGAGTGTTTCGTGTGAATATATGCATAGAGATATGTGCAGTTTTTTATTTCTTCAATTTTTTTTTGTTGTTGTGTAAATGGTGAATTGAATTCTGTCATAGGTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAGGTAATGTTTGTTGCAATTTTGATGGAGTACTATTGAAAATGTGTCAATTCCTTTCCATTTTATTAGTAACTTTTTTTTTTTTCGTGAAGAAAAAGCGAATAGGTAAATAGAATCATAGACTATTTCTGATATGTAGTTGACTCATTCTTTTGGGATTCCTCCGCAGCTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATCTGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCTACAGCTCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCTAATTGGAAATTTATTGGAGCAGCTCAAGATTACTGAACTTAAGAGGTATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAGGTAAGTTGCTTAAGTATAGTAGCTTAACTGTAATTTTCTGTTGGAAGCTGTAGTATCTCTTAAATTAAGTGTGAGGCTAGGGTCCATAGCCTATTTTCAACAGATTCTTTTAAATGCTTAAAAATATTTACAGAAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTATGTATGTTCCAGAATAATGTTCTATATTCTCCATACCATGTATCTTGTGATGTTTAATTGCCATTATGCTAAAGTACAATGTTTGGATGCTTGAAAGGGTTTGATAACTAACATCATCATTTTGGGCCGATATCATCATATTAGGTGCAATATCAAGATAATCCTAGTTAATGCCGGATTTACTATGCAGGTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAGGTAAGGAGAAAAAGTTTTTTAAAAAATAAGTACCTGATCATACATGCTGTGTCAACTCATGTGCACTGGTGGTTTTCTTTTTCTTTTCTTTTCTTTTTCAGGGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATGGTATATGCTTCACAGGAAAATTCCACTCCCTATTTCACATGTTTATGATACTTTTTTTTGTGTTAACAAGATTTGGCTGGGAATTGCATAGTAATTTCTTAACTTGGCTTTTAGCAGATGTGGATTCCTAGTCTGACTTCCTTGTGATTGTATTAAGTTCATTTTTAATATAGTGATTCACCCATCAATGATGCAGGTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAGGTACTGTTTGTCGCTATTGTTACTTGATAAGTGAGTTCCTTTGTGTGTTTAAATCTTGTATGCAATAATGTTATTCTTTGATGCGCAGGTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCC</genome_strand>
        <mrna_strand>GGGGGTAAACAGTGTAGATAACGGAGCTCCCAGACAACAGACACCGAAGAGAAAC................................................................................................................................................................................................................................................................................................................................................................GTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG......................................................................................................................................................................CTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATCTGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCTACAGCTCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCTAATTGGAAATTTATTGGAGCAGCTCAAGATTACTGAACTTAAGAGGTATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG.....................................................................................................................................AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT.............................................................................................................................................................................................GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG.....................................................................................................GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG....................................................................................................................................................................................................GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG........................................................................................GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563808" ref_strand="+" ref_description="SGN-U563808 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157354820|emb|CAO48166.1| (e_value=8e-108) unnamed; (*ATH) AT2G17790.1 (e_value=2e-107)  Symbol: None | similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:At3g51310.1); similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein... ; (*SWP) sp|Q54C24|VPS35_DICDI (e_value=9e-62) Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35; ">
      <seq>cggactcctgagaggaagaagggaaaattagaaatcggtcttaacgtttgtacagagtttagaatcaaacttggaattgcacgaccactccaatatagagaaggatcctcactagcagttgcagcaaaaacgaactccaaatctcccaaatttaccaggaaagatccaatatgataactaatggagtcgaagacgaagagaagtggcttgccgctgggatcgccggccttcagcagaacgcattttacatgcatcgcgctcttgactcgaacaatctgaaagatgcattgaaatactcggctcagatgctctcggagctccgaacttccaagctttctcctcacaaatactatgaactatatatgcgcgcatttgatgaattgaggaaattagagatcttcttcagagaggagacaaatcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaacattttgcctagattgtatctcctttgtacagtgggttcagtgtacattaaatcaaaggaggctcctgccaaggatattctcaaagatctggtggaaatgtgccgtagcatacaacatccattacgtggtctcttcctaaggagttacctttcacaagtcagtagggataaattgcctgatataggatctgaatatgaaggggatgctgacactgtcatggatgcagtagaattcgtgctccaaaatttcacagaaatgaacaaactttgggtgcgaatgcaacatcnnggacntgcacgggaaaaggaaaaacgtgaaaaanaaaggagcgagcttcgcgatcttgtggggaanaacctgcatgttctangtcaaattgagggcnt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="112511" stop="116160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112809" g_stop="113071" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113072" i_stop="113154" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113155" g_stop="113251" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="360" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113252" i_stop="113350" i_length="99">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113351" g_stop="113474" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="484" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115186" g_stop="115371" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="670" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115372" i_stop="115515" i_length="144">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115516" g_stop="115603" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="758" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115604" i_stop="115801" i_length="198">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115802" g_stop="115858" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="815" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115859" i_stop="115956" i_length="98">
            <donor d_prob="0.267" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115957" g_stop="115997" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="856" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U563808" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112809" e_stop="113071"/>
          <exon e_start="113155" e_stop="113251"/>
          <exon e_start="113351" e_stop="113474"/>
          <exon e_start="115186" e_stop="115371"/>
          <exon e_start="115516" e_stop="115603"/>
          <exon e_start="115802" e_stop="115858"/>
          <exon e_start="115957" e_stop="115997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCCTGAGAGGAAGAAGGGAAAATTAGAAATCGGTCTTAACGTTTGTACAGAGTTTAGAATCAAACTTGGAATTGCACGACCACTCCAATATAGAGAAGGATCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTTGTATATCCTTAAAGCTTCTAATTCAATTTTACATGTTAAATTGAGATTTTTGGTGTTTAAAACCCCTAATTTTGAGTTTTCAGGACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGTTATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAACTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAACCTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTGAAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACATATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTCATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAACTTGTAGTCTTAATATAAATATTTAATCTGCTAACACCATAGATTTAGAACCAGATTGGGTTAGTCAATTGGGTTTAACCTACATGGGTCAAGGAAGAAGCTACCAGTTGGACGTTTCAGTCCTCACAACTCTGAGTATCATTAGGCTAGCTGGAAAACCAAATTCCACAAACAACACTTCCACATTTTAAGCAAAGATGTAACTACTTTTGACTAAATCTCATAAGGTGTTCACCACGAGGAGGACCTGGTCGAGTAATGACTTCACCACAACTTGGGAAGCAAGAGACATTGGTCTTACTACCAATCACATGATTGTATTCTGGTCCATTTGACTCGTAACACTAAAGTGCTTTTGACCTTCTGGTTGTTTTCTTTTAAACTGTTCACTGACATCTGTCTCTATGTTTTGTTTAGCACTAAAGTTGACTGCAAGTTTCACTGCCCTAGCATCTCAGGAACTGAGAATCTGCTTGAAGTTGCATTTAGAGTATTTCTAACTGGAAAACGTCCATTATATATATGTGAATTTTTAGGAAAGCAAGCATATGGTAATTAGCAATAGGCCAGTATCTTTTCACAAAGTAAACTTAGCAAATCTTTTGTGAATTGGTGATTGCTTTTCATACTGGGAAGAATTCGTAGGTATTATGCTTGCTTTGCAGTACTTATAGATAGCAACTGGAACAGGAGGTTGTCACAAGTATAGCTGAAGATCTCAAGTTTCCTGTCCAGGGACGCTGAGATACTGTCCCAAATTTGGGTCATACATTTTCTTTTCTTGATAAAGTAACATTTTGTTGATATCCTGGGGGAATGAAACCTTGTTCCACGTAGTATACCAAAAAGTAGGGAACCTATATCATTACTAGTATAATAGGACTGATTGCATTCAAGATGATGATACAAAATAGTGGAATGCTTATAAGGACACTTGATACCTTTGTACCTTTACTTTTCGGTTACGTACCTTGAATATAACGAAATGCTAATACTGTTATATGGAACTTGATTTCATTATTCCTGTTATCTTGAGTTAAGAGAATTGAAATGCACTCAGATTGGTGTTTACTAGTATACAAGTCACTGGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTGGATCAAGAACCATGAGGTCTCGGGTTCAAATCCCAGAAAGACAAAAAACTAGGTGATTTATTTCTAGCCTTGGTGGACAAACTCCGGTACCTATCGTGGGTGGTAGGTAGCAACTATCCGCGGAATTAGTCAAGATGGGCGCAAGCTGCCCGAATACCACAGTTATCAAGAATAAAAGTATAGAAGGCACTGGTTGCCTTCTTAATCTTATGCTAATTCTGTTCTTATATCATTTGCATGTCTGTATTCAGGTTTTCATACCTGCTTTTTCTTCCTTAGGTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGGGTAAGGGCATCACCAAGCTGCTTTATCATTGGCTTTAATTATTAGATGGGTCACTTAGCAATGGTCAAGTTGCAAAAGGCGCTCCGTAAAAAAATTCACAAAATGAACATTTAGTTGGATACCCCTGACATGCTGTATCCACAGGGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCAGGTTGGTTCAAATGTCTGTGAATGCTGTAATTTCTCTCATACTTTGACATGAATAATGCCACAACGCCTGCATGTCATGAAGGTAAAAGAAAATTATGAAGGGATACTTTGTGGTCATGCAGGTGTTTTAATGCTTCTGAATGATAATACTCTTTGCTGATCATGAGTTGAGGGTTGCATCGGGCTTTCTGGTCTGCAGGGACATGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTTCGCGATCTTGTAATGAGCTGTAATTTAAGCATCATTACTAGCAACTGAACTTAGCAACGGATGTGCGCACTTATGTGAGGATTTCGTTTTGCTCTTATATTTGGTAGGTGGGGAAGAACCTGCATGTTCTAGGTCAAATTGAGGGCAT</genome_strand>
        <mrna_strand>CGGACTCCTGAGAGGAAGAAGGGAAAATTAGAAATCGGTCTTAACGTTTGTACAGAGTTTAGAATCAAACTTGGAATTGCACGACCACTCCAATATAGAGAAGGATCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTT...................................................................................GACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTAT...................................................................................................ATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGG................................................................................................................................................GGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCNN......................................................................................................................................................................................................GGACNTGCACGGGAAAAGGAAAAACGTGAAAAANAAAGGAGCGAGCTTCGCGATCTT..................................................................................................GTGGGGAANAACCTGCATGTTCTANGTCAAATTGAGGGCNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596671" ref_strand="+" ref_description="SGN-U596671 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354820|emb|CAO48166.1| (e_value=5e-67) unnamed; (*ATH) AT2G17790.1 (e_value=3e-67)  Symbol: None | similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:At3g51310.1); similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein... ; (*SWP) sp|Q2HJG5|VPS35_BOVIN (e_value=7e-35) Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35; ">
      <seq>tcctcactagcagttgcagcaaaaacgaactccaaatctcccaaatttaccaggaaagatccaatatgataactaatggagtcgaagacgaagagaagtggcttgccgctgggatcgccggccttcagcagaacgcattttacatgcatcgcgctcttgactcgaacaatctgaaagatgcattgaaatactcggctcanatgctctcggagctccgaacttccaagctttctcctcacaaatactatgaactatgtaagtggttttcactgatcggatctgctcgtactttataagttggaactcggagatcctttaactgcagtattggaattgtgctctttgatttgttagatatgcgcgcatttgatgaattgaggaaattanagatcttcttcagagaggagacaaatcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaacattttgcctagattgtatctcctttgtacagtgggttcagtgtacattaaatcaaaggaggctcctgccaaggatattctcaaagatctggtggaaatgtgccgtancatacaacatccattacgtgntctcttcctaaggagttacctttcacaagtcagtanngat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="112614" stop="115639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112914" g_stop="113071" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113072" i_stop="113154" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113155" g_stop="113474" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="478" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115339" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="632" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U596671" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112914" e_stop="113071"/>
          <exon e_start="113155" e_stop="113474"/>
          <exon e_start="115186" e_stop="115339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTTGTATATCCTTAAAGCTTCTAATTCAATTTTACATGTTAAATTGAGATTTTTGGTGTTTAAAACCCCTAATTTTGAGTTTTCAGGACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGTTATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAACTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAACCTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTGAAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACATATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTCATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAACTTGTAGTCTTAATATAAATATTTAATCTGCTAACACCATAGATTTAGAACCAGATTGGGTTAGTCAATTGGGTTTAACCTACATGGGTCAAGGAAGAAGCTACCAGTTGGACGTTTCAGTCCTCACAACTCTGAGTATCATTAGGCTAGCTGGAAAACCAAATTCCACAAACAACACTTCCACATTTTAAGCAAAGATGTAACTACTTTTGACTAAATCTCATAAGGTGTTCACCACGAGGAGGACCTGGTCGAGTAATGACTTCACCACAACTTGGGAAGCAAGAGACATTGGTCTTACTACCAATCACATGATTGTATTCTGGTCCATTTGACTCGTAACACTAAAGTGCTTTTGACCTTCTGGTTGTTTTCTTTTAAACTGTTCACTGACATCTGTCTCTATGTTTTGTTTAGCACTAAAGTTGACTGCAAGTTTCACTGCCCTAGCATCTCAGGAACTGAGAATCTGCTTGAAGTTGCATTTAGAGTATTTCTAACTGGAAAACGTCCATTATATATATGTGAATTTTTAGGAAAGCAAGCATATGGTAATTAGCAATAGGCCAGTATCTTTTCACAAAGTAAACTTAGCAAATCTTTTGTGAATTGGTGATTGCTTTTCATACTGGGAAGAATTCGTAGGTATTATGCTTGCTTTGCAGTACTTATAGATAGCAACTGGAACAGGAGGTTGTCACAAGTATAGCTGAAGATCTCAAGTTTCCTGTCCAGGGACGCTGAGATACTGTCCCAAATTTGGGTCATACATTTTCTTTTCTTGATAAAGTAACATTTTGTTGATATCCTGGGGGAATGAAACCTTGTTCCACGTAGTATACCAAAAAGTAGGGAACCTATATCATTACTAGTATAATAGGACTGATTGCATTCAAGATGATGATACAAAATAGTGGAATGCTTATAAGGACACTTGATACCTTTGTACCTTTACTTTTCGGTTACGTACCTTGAATATAACGAAATGCTAATACTGTTATATGGAACTTGATTTCATTATTCCTGTTATCTTGAGTTAAGAGAATTGAAATGCACTCAGATTGGTGTTTACTAGTATACAAGTCACTGGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTGGATCAAGAACCATGAGGTCTCGGGTTCAAATCCCAGAAAGACAAAAAACTAGGTGATTTATTTCTAGCCTTGGTGGACAAACTCCGGTACCTATCGTGGGTGGTAGGTAGCAACTATCCGCGGAATTAGTCAAGATGGGCGCAAGCTGCCCGAATACCACAGTTATCAAGAATAAAAGTATAGAAGGCACTGGTTGCCTTCTTAATCTTATGCTAATTCTGTTCTTATATCATTTGCATGTCTGTATTCAGGTTTTCATACCTGCTTTTTCTTCCTTAGGTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGAT</genome_strand>
        <mrna_strand>TCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTT...................................................................................GACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCANATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTANAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTANCATACAACATCCATTACGTGNTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTANNGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565496" ref_strand="+" ref_description="SGN-U565496 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157335128|emb|CAO60958.1| (e_value=0) unnamed; (*ATH) AT1G75850.1 (e_value=0)  Symbol: None | similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:At3g51310.1); similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein... ; (*SWP) sp|Q9EQH3|VPS35_MOUSE (e_value=6e-69) Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35; ">
      <seq>tttcgaactatgctgctttaagtgcagaagttttacctgagttcttccaggttgaagctttcgcaaaacttaatagtgccataggcaaggtgatagaggctcaagaagacatgcctattgccggagtggtgacattgtattcatcccttttgacattttctcttcatgtccaccctgatcgccttgattatgtagatcagattctgggtgcatgtgtacagaaactttctggaaaaggaaagctcaaagacaacaaagcaacaaaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttttagtacaaaatattttgaaaaataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagcactaattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaagagcagaattctgttgcgcagcttattcaaatgcttcacaatgatgatcctgaagagatgctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttcttcgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaatttgagtccatcaactcctagccaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagaacattattcttacgaaatacaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggattagcagaagcagctgaaaagatgcatatatcctgaccacacccctacgcggtaatatcctaataaagattgttattgttgtaacaattgctctccagctatgacttccgagtgcctgctcactgttacttcttttgttttggtggagggtaggttttcttttgaggtggaagagaggaggagtggagtagttcattaatttctcagttcagaaatgtgattatgacgagtgccagaataatttgtccttcagttttgtataacatgttctatcccatttgacattttgttttaacattttgcaggctaccaataacttttaaacagatcaatgtctaatgattattggagcattcattgaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="116801" stop="122437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117101" g_stop="117129" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117130" i_stop="117205" i_length="76">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117206" g_stop="117265" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="89" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117266" i_stop="117919" i_length="654">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117920" g_stop="118036" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="206" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118037" i_stop="118304" i_length="268">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118305" g_stop="118544" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="446" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118545" i_stop="118627" i_length="83">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118628" g_stop="118693" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="512" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118694" i_stop="118813" i_length="120">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118814" g_stop="118903" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="602" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118904" i_stop="119809" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119810" g_stop="119899" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="692" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="120171" g_stop="120260" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="782" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="120532" g_stop="120600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="851" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="120680" g_stop="120760" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="932" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="120869" g_stop="120976" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1040" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="121066" g_stop="121169" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1144" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="121306" g_stop="121419" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1258" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="121511" g_stop="122134" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1259" r_stop="1875" r_length="617" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1955" polyA_stop="1971"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U565496" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1882</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117101" e_stop="117129"/>
          <exon e_start="117206" e_stop="117265"/>
          <exon e_start="117920" e_stop="118036"/>
          <exon e_start="118305" e_stop="118544"/>
          <exon e_start="118628" e_stop="118693"/>
          <exon e_start="118814" e_stop="118903"/>
          <exon e_start="119810" e_stop="119899"/>
          <exon e_start="120171" e_stop="120260"/>
          <exon e_start="120532" e_stop="120600"/>
          <exon e_start="120680" e_stop="120760"/>
          <exon e_start="120869" e_stop="120976"/>
          <exon e_start="121066" e_stop="121169"/>
          <exon e_start="121306" e_stop="121419"/>
          <exon e_start="121511" e_stop="122134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAACTATGCTGCTTTAAGTGCAGAAGTTAGTTACAAATTCAAACTTCTCTGGAATAAGAAATTTTTATGCCTTCCGGTTTCTGAATAATTTTTTCCTGCAGGTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAGGTAATTGAGATTAATATTCTTAAATATATTAAAACTGCTATATGGGTTCTGGAATGCTTTGAGAAGAAACTTTTTTTGTATCGTGGATTTTCTACCTCCACCTTATAGAAATTAGTGGATATTGCTTGAAGTTTAAGAATTTTAATAAGAGATACTTACTGACCAGCAACCATTGCATTCTCCCTTGTAGGAGATTCAGATAAATCTATGAAACAAGTATTTTCATAGCTTCGTAGCAGAAAGTTTCATTCAGAAAGATTATTGTTTGTCACGGTAAAGATTGATCATACTTTATTCATGACCAGATGATTTCTGATCTGTTCTCCATTTGGGATATTTGACCAGAAAGTGTTCCAAGACATTCTTGATTGTTTCATCTTTGCTTGAATAAAGAACAATACTGTTGCTTTCTGAAGGAATTATCTGGTTCTCATAAAACAAAAACTTAACATAAAGGCTGTTTGAAGTGCACAGTAAACCGATTCTTAAATCATATTAAATTACAGAATTGTTTTCCAAAGAAAAAAAAACTGAACTACACGACTTTGAAGTCATTGTACCAAGGTTTTTCCTACTGATCGTAATGAACTTTAGCTATGTATTTCTTTGATTATGATGATGCGCTCCATTATGCCTGTCTCTCTGTTGGTGCAGGTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTGGTAGGTTTCTCTCTTTCTCAATAACTAGTTGCTATAGGCTCTATGGTTTTACTTTTTGTGTTTTCCAAGTAAGTGTATCACACTTATTAGTCTGATGCTTTTTTTTGGATCCAAAGTGAATATGTGAAATTTATAATACGGTACACTAAAACAAGATATGTTGAAGTTGAAACTTTTCATCCTTTGAAATCTATGTCTATTTAGACGATTTTCTGGCCTGCCTGGTTCATGTGGAACCTGTAAAGATCACACTCTTATTCACTTGCAGGGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTTGATTCTAGATAATTTTGTGTACTTCAATTTATTGCTTACAAATGTTACCCATGTTTCTACGAATTACTGGTCTTATCAGGTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAGGTGGACTGGAAACTCTGTGCTTGCATAAAAGTTCCTTAGTTCTTTCTTATATTTTCCTTTCATCACATATTTAAAATTAGTTTGTGCTGTGCCTTAAATTCTTTATCCTCCAATTTTCAGCTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAGGTAATTATGATTTACTTTCTTTTGAATTACTTGTATACTCCTTTTATGGATTAATTACTAGCTCTTGCAAGAGAAGACAGTAATATTCCCTATTACCCTCTGAGTTTATCAGAGAGATAAATAGGAATGAGCTCTTGAGTTTTGACATTAGTTGCAACTTGTATGTGATGAATTGGATGTATGTATAATGATCTACTGTAGTGTTAAGTTTTCACTTTATTGTGAAGGAGGAAAAACAAAATAAGAAAATGATGAAAAGTCACTGCCAACACTAGGGAAGAACTTTAAGCTGATCATGATTTGCTAGTCTTATCTTTTCATTTGGGGGATAATTTTACAGAAATTAGAAAGAAAAAAGACGTCAAACACATAATAGTCTTGACTATGTGTCCCCGATTAGTCTGTATAGTAAACATATAAAAGTAAGTATAAAAAATAATTAAATAACAACATTGGCATTTCCATTTGATTAAAATTTCAAGGTAACATTATTAGAAGTGTGAATCTCCAGCATATCCTTAATGCTAAGGAATACAACAATTGCAGTTTCCAAAAAAAACAAAAAACAAATATATGAAGTGTGAATCAGTTGCTGTAACATGTGCTTTGTGTGTGAGCTATCTTCAGGACAGTATGCAAGGTCCATCTTTTGTGGACTCTGCAACTTCTCAGCCTTGTATCACAAACTGAGCTTGTAACCAAAGTGAACAGCTCCTGCCTCTTGGCTCTGGAGTTATCCCCATTTTCTTTTATATGATTGTTTTTGCTCAAGCAAAGCATGCATCTGGTGATAATGTTGTATGGTTTGTTTCTATGTGGCTACAGTGTTTGTTTTCGTAGTTGTATAAAAAAGGTGTTGTTTTCTTGCTTCAAGTTCATATAGTTTGCTATTTCATTGAATTGCAGATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGC-CACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGT-AGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</genome_strand>
        <mrna_strand>TTTCGAACTATGCTGCTTTAAGTGCAGAA............................................................................GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG............................................................................................................................................................................................................................................................................GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG...................................................................................GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG........................................................................................................................CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTCGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTTGAGTCCATCAACTCCTAGCCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGAACATTATTCTTACGAAATAC-AAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGATTAGCAGAAGCAGCTGAAAAGATGCATATATCCTGACCACACCCCTACGCGGTAATATCCTAATAAAGATTGTTATTGTTGTAACAA-TTGCTCTCCAGCTATGACTTCCGAGTGCCTGCTCACTGTTAC----TTCTTTTGTTTTGGTGGAGGGTAGGTTTTCTTTTGAGGTGGAAGAGAGGAGGAGT-G-G-AGTAGTTCATTAATTTCTCAGTTCAGAAATGTGATTATGACGAGTGCCAGAATAATTTGTCCTTCAGTTTTGTATAACATGTTCTATCCCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565495" ref_strand="-" ref_description="SGN-U565495 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147841305|emb|CAN77886.1| (e_value=2e-28) hypothetical; (*ATH) AT1G75850.1 (e_value=9e-27)  Symbol: None | similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:At3g51310.1); similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein... ; ">
      <seq>aagcggggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttacttttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccatttaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="121022" stop="122434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121322" g_stop="121419" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121511" g_stop="122134" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="723" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-U565495" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121322" e_stop="121419"/>
          <exon e_start="121511" e_stop="122134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGC-GGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</genome_strand>
        <mrna_strand>AAGCGGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565334" ref_strand="+" ref_description="SGN-U565334 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147768428|emb|CAN73628.1| (e_value=4e-78) hypothetical; (*ATH) AT5G53300.2 (e_value=2e-77) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=2e-76) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>gcattatcttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaacaagagaattgttctcaacttgatgatgcatataatcctttccttcaagtcatatgtacatgattgagtttggaagtaggattctctctcgagaattccttcttatagttgttaaactacactgtttcttctttctgctttaaataatttcttgttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123851" stop="122043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123552" g_stop="123436" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122343" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="812" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U565334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123552" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</genome_strand>
        <mrna_strand>GCATTATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597108" ref_strand="+" ref_description="SGN-U597108 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|52851174|emb|CAH58635.1| (e_value=3e-53) Ubiquitin-conjugating enzyme [Plantago major]; (*ATH) AT4G27960.2 (e_value=9e-53) | Symbol: None | ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9), E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883 | chr4:13915839-13917426 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-51) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgaggattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaacaagagaattgttctcaacttgatgatgcatataatcctttccttcaagtcatatgtacatgattgagtttggaagtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123836" stop="122122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123536" g_stop="123436" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="229" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="334" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122774" i_length="275">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122773" g_stop="122422" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="686" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U597108" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123536" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122773" e_stop="122422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</genome_strand>
        <mrna_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG...................................................................................................................................................................................................................................................................................ATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGGATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597107" ref_strand="+" ref_description="SGN-U597107 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147768428|emb|CAN73628.1| (e_value=2e-74) hypothetical; (*ATH) AT5G53300.2 (e_value=2e-73) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-72) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ctcattattaatggcatccaggagaattcaccttgagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggcgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccacatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggacctcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctaccagcaaaatataatatgtccacgacaacttttgctctatgaaaatgacaattcattgacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123815" stop="122271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123515" g_stop="123436" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="208" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="313" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122571" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="548" r_length="235" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U597107" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123515" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGA-CTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGT</genome_strand>
        <mrna_strand>CTCATTATTAATGGCATCCAGGAGAATTCACCTTGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGCGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCACATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACCTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACCAGCAAAATATAATATGTCCACGACAACTTTTGCTCTATGAAAATGACAATTCATTGACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565336" ref_strand="+" ref_description="SGN-U565336 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|52851174|emb|CAH58635.1| (e_value=2e-43) Ubiquitin-conjugating enzyme [Plantago major]; (*ATH) AT5G53300.2 (e_value=1e-42) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-41) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtacacaccaatattacaactagtaattttcccaaatttaaagtagaagatagttttgaagatttgttatactaatatttttcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtatgttttcaattgatcactctccacaaagggactgctgatattaagttttcatatatatattgacaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccnaggtgctactgctttctagctcttccttttcctcaatgatttactatttcataaatcaaaagggatacacattagttagtgtttggttgctggctaacataaaaataaaatccaagtcgcataaaggataactgtaattaaatgttcatatataaacggaactagttacctgaaaataanaccagtaacttgcaaaaacaatatagtataaacttctacaatttgctgttggttttgnggangnnnnttttgctgtccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123836" stop="122508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123536" g_stop="122788" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U565336" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123536" e_stop="122788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATG</genome_strand>
        <mrna_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCNAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAANACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGNGGANGNNNNTTTTGCTGTCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581579" ref_strand="+" ref_description="SGN-U581579 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|14278856|gb|AAK31299.1| (e_value=8e-98) Rac-like GTPase 1 [Nicotiana tabacum]; (*ATH) AT3G51300.1 (e_value=5e-98) | Symbol: ROP1AT | Pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins, interacts with RIC3 and RIC4 to control tip growth in pollen tubes. | chr3:19053866-19055330 FORWARD | Aliases: F24M12.340, ARAC11, ROP1, ROP1AT; (*SWP) sp|Q39435|RAC1_BETVU (e_value=6e-98) Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1; ">
      <seq>gcattatttcccggctaaaacaaagggttacttataatactgactcagaatggaaaaaaatacagagatgaacacccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgtagaccatcctggtgctgtgccaattaccactgctcagggtgaagagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttctgtgtaatggctgtgatctctaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttctgatttgctttaaatgtattttaatgacctgatgatccagttagaaaaaaaaaaaaaggaaattttcccggcaatgttgacaacatatttctctgaacatattaaacgtttctttttagatattgcattcaagatatattactattttctttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128939" stop="124901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128639" g_stop="128039" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="689" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126959" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="799" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="863" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126030" g_stop="125966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="928" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125862" g_stop="125797" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="929" r_stop="994" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125695" g_stop="125201" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1490" r_length="496" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U581579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1489</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128639" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="125966"/>
          <exon e_start="125862" e_stop="125797"/>
          <exon e_start="125695" e_stop="125201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAA-ATATATTACTATTTTCTTTCAAGT</genome_strand>
        <mrna_strand>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTAAATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAGATATATTACTATTTTCTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568781" ref_strand="+" ref_description="SGN-U568781 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|18654278|gb|AAL77575.1|L46847_1 (e_value=0) dehydroquinate; (*ATH) AT5G66120.2 (e_value=0) | Symbol: None | 3-dehydroquinate synthase, putative, similar to aroB (Neisseria gonorrhoeae)(GI:2661441); contains 3-dehydroquinate synthase domain PF01761 | chr5:26448602-26451004 REVERSE | Aliases: None; (*SWP) sp|Q31DP9|AROB_THICR (e_value=9e-125) 3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB; ">
      <seq>taaccacctaaccagccatccacaaatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaatatacttgctgatgcatcttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135593" stop="129902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135293" g_stop="134901" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132759" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="544" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="712" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="939" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1063" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1064" r_stop="1126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1270" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130695" g_stop="130202" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1764" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-U568781" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135293" e_stop="134901"/>
          <exon e_start="132909" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTAT</genome_strand>
        <mrna_strand>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="752" e_stop="2270"/>
            <exon e_start="2367" e_stop="2713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="752" e_stop="2270" e_length="1519"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="2367" e_stop="2713" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="752" stop="1954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1853" stop="2270"/>
              <exon start="2367" stop="2713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587505" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTG</gDNA_template>
            <first_frame> S  F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L </first_frame>
            <second_frame>  V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y   </second_frame>
            <third_frame>   F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1000" stop="1332"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2086" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="776" e_stop="1287"/>
            <exon e_start="2140" e_stop="2270"/>
            <exon e_start="2367" e_stop="2716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="776" e_stop="1287" e_length="512"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2140" e_stop="2270" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2367" e_stop="2716" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="776" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</gDNA_template>
            <first_frame> S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  * </first_frame>
            <second_frame>  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C   </second_frame>
            <third_frame>   K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1000" stop="1287"/>
                    <exon start="2140" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="1" e_stop="405"/>
            <exon e_start="1036" e_stop="1442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="405" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.942">
            <gDNA_intron_boundary i_start="406" i_stop="1035" i_length="630"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="1036" e_stop="1442" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="405"/>
              <exon start="1036" stop="1442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAGAGATGCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</gDNA_template>
            <first_frame> E  E  E  M  L  T  L  L  C  V  K  I  N  H  E  C  D  L  Y  C  F  *  S  P  F  L  P  H  R  P  N  L  C  T  S  V  I  *  T  V  M  M  N  I  E  I  V  P  D  R  S  F  D  R  K  N  *  E  C  S  Y  Q  E  S  A  I  P  I  L  L  V  E  L  W  D  Y  F  N  L  T  P  R  K  *  E  C  L  V  F  I  S  M  I  S  F  Q  *  L  L  K  V  G  F  C  N  S  G  K  M  C  *  Q  L  T  V  *  E  D  E  D  K  I  R  S  R  Q  L  N  R  R  K  *  S  F  Q  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F   </first_frame>
            <second_frame>  K  K  R  C  L  R  Y  S  A  L  K  S  T  M  S  A  I  F  I  V  F  N  L  P  F  F  L  I  D  P  I  Y  A  P  V  *  S  E  P  S  *  *  I  *  K  L  Y  Q  I  G  V  L  T  V  K  I  E  N  V  V  I  K  N  Q  P  F  Q  Y  Y  *  L  N  C  G  I  I  S  I  *  H  R  V  S  K  N  V  W  C  S  F  L  *  F  H  F  S  D  C  S  R  L  V  F  V  I  L  A  R  C  A  D  N  L  L  C  E  R  M  R  I  R  *  D  L  D  N  *  I  E  E  N  N  L  F  S :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  </second_frame>
            <third_frame>   R  R  D  A  Y  A  T  L  R  *  N  Q  P  *  V  R  S  L  L  F  L  I  S  L  S  S  S  S  T  Q  S  M  H  Q  C  N  L  N  R  H  D  E  Y  R  N  C  T  R  *  E  F  *  P  *  K  L  R  M  *  L  S  R  I  S  H  S  N  I  T  S  *  I  V  G  L  F  Q  S  N  T  A  *  V  R  M  F  G  V  H  F  Y  D  F  I  S  V  T  A  Q  G  W  F  L  *  F  W  Q  D  V  L  T  T  Y  C  V  R  G  *  G  *  D  K  I  S  T  I  E  *  K  K  I  I  F  S   : A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="397" stop="405"/>
                    <exon start="1036" stop="1332"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4504" PGL_stop="8792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4504" e_stop="4905"/>
            <exon e_start="4997" e_stop="5084"/>
            <exon e_start="5511" e_stop="5608"/>
            <exon e_start="5736" e_stop="5833"/>
            <exon e_start="6945" e_stop="7074"/>
            <exon e_start="7156" e_stop="7343"/>
            <exon e_start="7524" e_stop="7610"/>
            <exon e_start="8143" e_stop="8344"/>
            <exon e_start="8773" e_stop="8792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="0.990"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.941"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="4504" e_stop="4905" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4997" e_stop="5084" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5511" e_stop="5608" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5736" e_stop="5833" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6945" e_stop="7074" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7156" e_stop="7343" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="7524" e_stop="7610" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="8143" e_stop="8344" e_length="202"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="8345" i_stop="8772" i_length="428"/>
          </intron>
          <exon e_serial="9" e_score="0.650">
            <gDNA_exon_boundary e_start="8773" e_stop="8792" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4504" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7343"/>
              <exon start="7524" stop="7610"/>
              <exon start="8143" stop="8344"/>
              <exon start="8773" stop="8792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTCATACAGATTACAACAGAAAGTCTGCAAGGATAAATACATTGTTTTACCGAAAATAAATAAATAAACAAAATCTGTGTTTGATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTC : GAAAAAATCCATTGAAAAGA</gDNA_template>
            <first_frame> I  C  H  T  D  Y  N  R  K  S  A  R  I  N  T  L  F  Y  R  K  *  I  N  K  Q  N  L  C  L  I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K  M  *  E  A  S  F  :  E  K  I  H  *  K   </first_frame>
            <second_frame>  S  V  I  Q  I  T  T  E  S  L  Q  G  *  I  H  C  F  T  E  N  K  *  I  N  K  I  C  V  *  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *  R  C  E  K  L  H  S :   K  K  S  I  E  K  </second_frame>
            <third_frame>   L  S  Y  R  L  Q  Q  K  V  C  K  D  K  Y  I  V  L  P  K  I  N  K  *  T  K  S  V  F  D  *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  D  V  R  S  F  I   : R  K  N  P  L  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4712" stop="4905"/>
                    <exon start="4997" stop="5084"/>
                    <exon start="5511" stop="5608"/>
                    <exon start="5736" stop="5833"/>
                    <exon start="6945" stop="7074"/>
                    <exon start="7156" stop="7343"/>
                    <exon start="7524" stop="7597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4728" e_stop="4905"/>
            <exon e_start="4997" e_stop="5084"/>
            <exon e_start="5511" e_stop="5608"/>
            <exon e_start="5736" e_stop="5833"/>
            <exon e_start="6972" e_stop="7074"/>
            <exon e_start="7156" e_stop="7343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="0.835"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4728" e_stop="4905" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4997" e_stop="5084" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5511" e_stop="5608" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5736" e_stop="5833" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5834" i_stop="6971" i_length="1138"/>
          </intron>
          <exon e_serial="5" e_score="0.835">
            <gDNA_exon_boundary e_start="6972" e_stop="7074" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="7156" e_stop="7343" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4728" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6972" stop="7074"/>
              <exon start="7156" stop="7343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : ACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG</gDNA_template>
            <first_frame> K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M </first_frame>
            <second_frame>  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A   </second_frame>
            <third_frame>   G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : D  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4730" stop="4905"/>
                    <exon start="4997" stop="5084"/>
                    <exon start="5511" stop="5608"/>
                    <exon start="5736" stop="5833"/>
                    <exon start="6972" stop="7074"/>
                    <exon start="7156" stop="7342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVDYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16220" PGL_stop="17957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16220" e_stop="16586"/>
            <exon e_start="16958" e_stop="17136"/>
            <exon e_start="17279" e_stop="17362"/>
            <exon e_start="17442" e_stop="17609"/>
            <exon e_start="17707" e_stop="17957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16220" e_stop="16586" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16958" e_stop="17136" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17279" e_stop="17362" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17442" e_stop="17609" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17707" e_stop="17957" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16220" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGTCAACTTGTCTTAGCAACGAAGATTACTCCTTTTGCTGTATACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG : GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</gDNA_template>
            <first_frame> I  V  N  L  S  *  Q  R  R  L  L  L  L  L  Y  T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  :  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R   </first_frame>
            <second_frame>  L  S  T  C  L  S  N  E  D  Y  S  F  C  C  I  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R :   T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  </second_frame>
            <third_frame>   C  Q  L  V  L  A  T  K  I  T  P  F  A  V  Y  T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T   : G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16370" stop="16586"/>
                    <exon start="16958" stop="17136"/>
                    <exon start="17279" stop="17362"/>
                    <exon start="17442" stop="17609"/>
                    <exon start="17707" stop="17829"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQDFQRGETARCLPQCHHMFHLPCIDTWLLRHGSCPLCRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19911" PGL_stop="21478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19911" e_stop="21478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19911" e_stop="21478" e_length="1568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19911" stop="21478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCTTCCCGTTTCCGTTCATTCTAAATGCCGCCGTGTCTCTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGC</gDNA_template>
            <first_frame> V  L  P  V  S  V  H  S  K  C  R  R  V  S  A  F  P  P  L  S  L  T  L  P  Q  L  F  S  P  R  A  A  A  S  H  Y  *  N  R  R  M  L  P  Q  I  Y  P  L  A  Q  L  L  S  L  I  P  P  E  S  L  S  S  A  A  V  *  L  A  *  Q  L  P  F  G  F  K  L  T  T  S  P  F  S  F  S  K  L  L  M  P  L  V  V  A  F  G  P  M  *  L  T  D  I  P  L  I  V  V  S  R  F  S  L  L  V  I  L  K  P  E  K  S  L  I  M  T  L  *  T  S  E  N  S  I  R  G  L  R  F  T  M  V  V  V  S  T  P  L  L  I  L  S  G  I  S  Q  M  H  C  N  L  *  L  T  Q  L  V  Q  L  W  I  N  Y  L  *  D  *  L  D  *  K  F  *  R  K  V  M  M  K  Y  *  V  L  M  K  N  L  R  *  I  Y  *  R  R  S  V  F  L  M  Q  Y  W  K  G  S  F  D  R  F  L  V  E  F  S  S  I  E  S  L  K  Q  R  R  G  C  S  I  S  S  S  N  A  *  L  L  V  T  T  H  F  R  R  R  A  L  R  P  F  R  N  S  W  R  Q  N  C  R  R  I  Q  Y  C  S  I  H  V  L  F  P  L  I  Q  D  R  I  P  A  Q  K  *  E  *  H  Y  K  M  G  K  C  W  K  V  N  L  G  *  Y  W  Q  L  K  S  L  K  L  S  S  C  W  R  E  K  K  P  V  R  F  G  N  R  F  G  A  Q  Y  V  C  I  F  Q  L  T  K  A  K  F  R  C  R  I  R  F  F  F  L  T  D  R  V  K  V  S  L  I  T  C  S  S  R  P  M  W  L  P  L  M  L  R  Q  G  R  H  W  F  L  S  R  L  W  G  F  M  V  M  W  Q  M  R  I  W  W  I  G  S  *  R  S  Y  R  V  G  L  G  S  R  *  L  G  H  G  V  T  *  G  C  T  G  S  G  L  P  N  R  T  N  A  H  P  L  T  *  R  R  T  R  K  *  N  R  A  C  T  F  V  E  I  M  *  L  A  L  L  L  M  E  L  *  F  L  G  K  K  Q  Q  K  L  C  Y  K  I  K  L  W  L  L  Y  S  L  I  L  V  *  V  F  F  P  L  V  *  K  *  K  F  *  M  L  L  I  Y  L  Y  M  E  S  *  T  F  R  D  H  L  H   </first_frame>
            <second_frame>  S  F  P  F  P  F  I  L  N  A  A  V  S  L  P  S  R  H  S  P  S  P  F  L  N  S  F  L  H  A  P  P  L  P  T  T  K  T  A  V  C  F  L  K  Y  T  R  W  L  N  F  S  A  *  Y  H  R  S  H  C  H  R  R  R  F  S  W  P  S  S  C  H  S  A  S  S  *  Q  H  P  L  S  P  S  R  S  F  *  C  R  W  W  S  R  S  V  R  C  S  *  R  I  Y  P  *  S  W  F  P  D  F  H  Y  W  L  S  *  S  P  K  S  P  *  L  *  L  F  R  P  Q  K  I  L  F  G  G  S  G  L  L  W  W  S  F  P  H  R  C  *  S  S  P  A  F  R  R  C  T  A  I  F  N  *  P  N  W  F  S  C  G  *  I  T  Y  R  I  D  *  I  E  S  F  D  A  R  *  *  *  N  I  E  C  *  *  R  T  Y  D  E  F  I  K  E  D  R  F  F  *  C  N  I  G  K  V  L  S  T  V  F  W  W  N  F  L  R  *  R  A  *  N  N  V  A  A  V  Q  F  H  L  Q  M  P  S  S  W  *  Q  H  T  S  G  E  G  H  C  G  H  S  G  T  V  G  G  K  T  A  V  E  F  N  I  V  Q  Y  T  C  C  F  R  *  F  R  I  G  F  Q  H  K  N  K  S  D  T  T  K  W  G  N  V  G  K  *  I  W  G  N  I  G  S  *  R  A  *  S  C  Q  V  V  G  G  R  K  N  R  *  G  S  A  T  G  S  E  H  S  M  F  V  F  F  S  *  P  R  Q  S  S  G  A  G  S  G  S  S  S  *  R  I  G  *  R  Y  R  *  *  H  V  L  R  D  Q  C  G  S  L  L  C  S  G  R  E  G  T  G  F  C  H  A  C  G  A  L  W  *  C  G  R  *  G  F  G  G  S  G  R  E  G  A  I  G  L  V  W  G  V  G  S  W  V  M  G  L  L  E  D  V  Q  D  R  V  C  P  T  E  P  M  P  T  H  *  L  E  E  E  P  E  S  E  T  G  L  V  H  L  W  R  L  C  D  *  R  Y  F  *  W  S  F  S  F  W  E  K  S  S  R  N  F  V  T  R  *  S  S  G  Y  C  I  A  *  F  W  F  E  F  F  F  H  L  C  K  S  R  S  F  E  C  C  *  F  I  C  I  W  N  H  K  R  F  E  I  I  Y  M  </second_frame>
            <third_frame>   P  S  R  F  R  S  F  *  M  P  P  C  L  C  L  P  A  T  L  P  H  P  S  S  T  L  F  S  T  R  R  R  F  P  L  L  K  P  P  Y  A  S  S  N  I  P  V  G  S  T  S  Q  P  N  T  T  G  V  I  V  I  G  G  G  L  A  G  L  A  A  A  I  R  L  Q  A  D  N  I  P  F  L  L  L  E  A  S  D  A  V  G  G  R  V  R  S  D  V  V  D  G  Y  T  L  D  R  G  F  Q  I  F  I  T  G  Y  P  E  A  R  K  V  L  D  Y  D  S  L  D  L  R  K  F  Y  S  G  A  Q  V  Y  Y  G  G  R  F  H  T  V  A  D  P  L  R  H  F  A  D  A  L  Q  S  L  T  N  P  I  G  S  V  V  D  K  L  L  I  G  L  T  R  L  K  V  L  T  Q  G  D  D  E  I  L  S  A  D  E  E  P  T  M  N  L  L  K  K  I  G  F  S  D  A  I  L  E  R  F  F  R  P  F  F  G  G  I  F  F  D  R  E  L  E  T  T  S  R  L  F  N  F  I  F  K  C  L  A  L  G  D  N  T  L  P  A  K  G  I  A  A  I  P  E  Q  L  A  A  K  L  P  S  N  S  I  L  F  N  T  R  V  V  S  V  D  S  G  S  D  S  S  T  K  I  R  V  T  L  Q  N  G  E  M  L  E  S  E  F  G  V  I  L  A  V  E  E  P  E  A  V  K  L  L  A  G  E  K  T  G  E  V  R  Q  P  V  R  S  T  V  C  L  Y  F  S  A  D  Q  G  K  V  P  V  Q  D  P  V  L  L  L  N  G  S  G  K  G  I  V  N  N  M  F  F  A  T  N  V  A  P  S  Y  A  P  A  G  K  A  L  V  S  V  T  L  V  G  L  Y  G  D  V  A  D  E  D  L  V  D  R  V  V  K  E  L  S  G  W  F  G  E  S  V  V  G  S  W  G  Y  L  R  M  Y  R  I  G  F  A  Q  P  N  Q  C  P  P  T  N  L  K  K  N  P  K  V  K  P  G  L  Y  I  C  G  D  Y  V  T  S  A  T  F  D  G  A  L  V  S  G  K  K  A  A  E  T  L  L  Q  D  K  A  L  V  I  V  *  L  N  F  G  L  S  F  F  S  T  C  V  K  V  E  V  L  N  V  V  D  L  F  V  Y  G  I  I  N  V  S  R  S  F  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19937" stop="21370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPPCLCLPATLPHPSSTLFSTRRRFPLLKPPYASSNIPVGSTSQPNTTGVIVIGGGLAGLAAAIRLQADNIPFLLLEASDAVGGRVRSDVVDGYTLDRGFQIFITGYPEARKVLDYDSLDLRKFYSGAQVYYGGRFHTVADPLRHFADALQSLTNPIGSVVDKLLIGLTRLKVLTQGDDEILSADEEPTMNLLKKIGFSDAILERFFRPFFGGIFFDRELETTSRLFNFIFKCLALGDNTLPAKGIAAIPEQLAAKLPSNSILFNTRVVSVDSGSDSSTKIRVTLQNGEMLESEFGVILAVEEPEAVKLLAGEKTGEVRQPVRSTVCLYFSADQGKVPVQDPVLLLNGSGKGIVNNMFFATNVAPSYAPAGKALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKALVIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28480" PGL_stop="24905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28480" e_stop="28154"/>
            <exon e_start="27772" e_stop="27358"/>
            <exon e_start="27187" e_stop="26820"/>
            <exon e_start="26371" e_stop="26135"/>
            <exon e_start="25395" e_stop="24905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.598" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28480" e_stop="28154" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.598" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27772" e_stop="27358" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27187" e_stop="26820" e_length="368"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26371" e_stop="26135" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="25395" e_stop="24905" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28480" stop="28154"/>
              <exon start="27772" stop="27358"/>
              <exon start="27187" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="24905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT : AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTT</gDNA_template>
            <first_frame> K  E  E  K  K  N  *  K  S  C  L  F  F  F  F  Y  L  L  L  H  L  P  F  H  S  H  L  P  H  S  T  E  K  Q  I  Y  R  E  K  K  E  N  K  K  L  K  K  K  P  T  K  Q  E  K  D  L  I  F  S  L  Y  F  I  F  F  N  R  I  F  S  *  T  L  V  D  L  *  W  I  C  R  S  N  V  Y  W  L  R  L  I  V  F  S  H  C  V  I  Q  *  Y  Y  T  I  *  G  L  I  T  T  :  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N   </first_frame>
            <second_frame>  K  R  K  K  K  I  K  K  A  A  F  F  S  S  F  I  F  F  F  I  F  L  S  I  L  I  S  H  I  Q  L  K  N  R  Y  I  E  R  K  R  K  T  K  N  *  K  R  N  Q  Q  N  R  K  K  T  *  S  F  L  C  I  S  Y  S  L  T  V  Y  S  H  K  L  W  L  I  F  N  G  S  V  D  L  T  F  I  G  Y  V  *  L  Y  F  H  T  V  *  F  S  N  I  I  P  Y  K  A  *  S  Q  L :   T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  </second_frame>
            <third_frame>   R  G  K  K  K  L  K  K  L  P  F  F  L  L  L  S  S  S  S  S  S  F  P  F  S  S  P  T  F  N  *  K  T  D  I  *  R  E  K  G  K  Q  K  T  E  K  E  T  N  K  T  G  K  R  L  N  L  F  S  V  F  H  I  L  *  P  Y  I  L  I  N  S  G  *  S  L  M  D  L  *  I  *  R  L  L  A  T  F  N  C  I  F  T  L  C  D  S  V  I  L  Y  H  I  R  P  N  H  N   : *  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27679" stop="27358"/>
                    <exon start="27187" stop="26820"/>
                    <exon start="26371" stop="26135"/>
                    <exon start="25395" stop="25147"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26057" e_stop="25028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26057" e_stop="25028" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26057" stop="25028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTT</gDNA_template>
            <first_frame> K  V  G  L  I  F  L  R  Q  S  C  L  Y  F  K  H  I  T  N  S  R  S  L  V  V  L  F  F  A  N  H  R  I  I  A  L  K  A  L  I  I  I  Y  S  P  L  L  V  I  H  S  Y  I  A  S  *  K  N  Y  I  I  *  H  H  V  Q  I  *  R  A  D  Y  F  G  N  Y  I  L  *  S  L  I  I  L  L  V  K  S  T  M  R  *  K  C  S  M  S  L  T  Y  Q  K  Q  I  E  L  L  F  L  D  T  H  L  *  S  I  K  G  K  I  M  C  T  T  S  T  P  I  *  R  K  H  *  F  T  *  Q  K  L  S  D  *  R  T  T  I  T  L  *  S  M  K  N  G  N  K  K  L  Q  S  S  F  F  G  C  L  N  G  S  T  Q  G  L  Y  F  P  V  K  F  P  F  V  Y  V  V  P  C  V  A  I  M  N  K  G  *  G  S  S  E  C  *  W  I  S  M  L  S  L  L  G  K  *  L  H  F  L  Y  S  F  F  R  E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  </first_frame>
            <second_frame>  K  L  V  *  F  S  L  G  S  P  V  Y  I  L  S  T  L  Q  T  H  V  A  W  *  F  F  S  L  L  I  T  A  L  L  H  *  K  L  *  L  *  F  T  P  P  F  W  L  Y  T  V  T  L  H  L  K  K  I  T  S  F  N  I  M  C  R  F  R  E  Q  I  I  S  V  I  T  S  C  S  H  *  L  Y  C  S  *  K  A  Q  C  G  R  N  V  P  C  L  *  H  T  R  N  K  L  N  S  Y  S  *  I  L  I  Y  S  Q  *  K  A  K  L  C  V  P  R  A  H  P  F  D  E  N  I  S  L  L  N  K  S  Y  Q  I  S  E  R  Q  L  L  C  E  V  *  K  M  E  I  R  N  F  K  V  H  S  S  D  A  *  M  E  V  H  R  A  Y  T  S  L  S  N  S  L  S  C  M  L  F  R  V  L  P  S  *  I  R  V  E  V  H  L  N  V  D  G  F  Q  C  *  A  Y  *  E  S  N  Y  I  F  Y  I  H  S  S  G  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F </second_frame>
            <third_frame>   S  W  S  D  F  P  *  A  V  L  F  I  F  *  A  H  Y  K  L  T  *  P  G  S  S  F  L  C  *  S  P  H  Y  C  T  E  S  F  N  Y  N  L  L  P  P  F  G  Y  T  Q  L  H  C  I  L  K  K  L  H  H  L  T  S  C  A  D  L  E  S  R  L  F  R  *  L  H  L  V  V  T  N  Y  I  A  R  K  K  H  N  A  V  E  M  F  H  V  F  D  I  P  E  T  N  *  T  P  I  L  R  Y  S  S  I  V  N  K  R  Q  N  Y  V  Y  H  E  H  T  H  L  T  K  T  L  V  Y  L  T  K  A  I  R  L  A  N  D  N  Y  F  V  K  Y  E  K  W  K  *  E  T  S  K  F  I  L  R  M  L  E  W  K  Y  T  G  L  I  L  P  C  Q  I  P  F  R  V  C  C  S  V  C  C  H  H  E  *  G  L  R  F  I  *  M  L  M  D  F  N  V  E  L  I  R  K  V  T  T  F  S  I  F  I  L  Q  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25461" stop="25147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLMDFNVELIRKVTTFSIFILQGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38058" PGL_stop="39020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38058" e_stop="39020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="38058" e_stop="39020" e_length="963"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38058" stop="39020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTCAAGTGCCTTTCTCGAAGGAGTAGAGTTTTCATTGATGTTTGCCTT</gDNA_template>
            <first_frame> V  P  I  G  K  S  R  H  *  *  F  G  E  A  S  D  S  *  K  E  F  N  C  D  C  *  Q  Q  W  I  F  T  R  C  L  S  K  *  N  *  F  P  W  T  R  F  V  *  I  P  S  S  Q  P  N  L  T  S  S  K  A  E  V  *  F  C  T  V  L  C  F  Q  S  D  N  I  C  P  N  P  D  L  L  F  V  C  S  S  G  G  S  C  W  C  S  L  L  W  V  P  V  F  S  *  Q  V  Q  L  P  V  C  I  Q  S  A  R  F  P  C  W  *  *  W  E  V  D  G  Y  C  I  I  Y  H  E  V  L  C  *  L  V  P  P  F  N  A  T  F  L  F  C  T  R  R  L  N  *  A  S  S  H  I  H  T  W  I  V  S  G  V  *  T  L  A  L  *  *  G  F  F  S  A  S  V  I  T  R  H  T  D  Y  *  Q  H  C  R  R  A  N  *  L  *  G  F  L  T  T  Y  I  *  L  G  Y  V  *  F  M  T  C  E  *  N  Q  R  F  V  L  T  F  C  I  Y  S  Y  F  V  T  E  V  F  L  H  L  S  D  L  S  P  L  F  L  V  H  P  F  G  G  W  K  Q  I  F  G  L  G  P  Q  E  H  M  L  *  C  L  T  G  S  T  V  V  A  Q  S  V  F  L  R  S  G  L  D  Q  S  T  E  *  I  D  V  V  C  L  P  Q  H  L  L  K  C  L  S  R  R  S  R  V  F  I  D  V  C  L </first_frame>
            <second_frame>  Y  P  L  E  N  Q  D  I  D  S  L  E  R  P  L  I  H  E  R  S  S  T  V  I  A  D  N  N  G  F  L  H  D  A  S  P  N  E  I  D  F  P  G  Q  D  L  S  E  Y  P  P  V  S  R  T  S  P  V  P  K  P  K  F  D  F  A  Q  Y  Y  A  F  N  L  T  I  F  A  L  T  L  I  Y  C  S  F  A  P  L  V  V  P  V  G  A  V  Y  F  G  Y  R  Y  L  V  D  K  Y  N  F  L  F  V  Y  R  V  R  G  F  P  A  G  N  D  G  R  L  M  D  T  V  L  S  I  M  R  F  C  V  D  L  F  L  L  S  M  L  L  F  F  S  V  R  G  D  S  T  K  L  Q  A  I  F  T  L  G  L  L  V  V  Y  K  L  L  P  S  D  K  D  S  F  Q  P  A  L  L  Q  G  I  Q  T  I  D  N  I  V  E  G  P  T  D  Y  E  V  F  S  Q  P  T  F  D  W  D  T  Y  N  S  *  L  V  N  K  T  K  D  L  C  *  H  F  V  Y  I  L  I  L  L  R  K  C  S  C  I  Y  Q  I  S  L  L  F  S  W  F  I  L  L  V  V  G  N  R  Y  L  A  *  D  H  K  S  T  C  Y  N  V  *  R  V  P  L  *  *  H  S  L  Y  F  Y  D  Q  V  L  T  N  L  Q  S  E  *  M  L  F  V  Y  L  N  I  C  S  S  A  F  L  E  G  V  E  F  S  L  M  F  A   </second_frame>
            <third_frame>   T  H  W  K  I  K  T  L  I  V  W  R  G  L  *  F  M  K  G  V  Q  L  *  L  L  T  T  M  D  F  Y  T  M  P  L  Q  M  K  L  I  S  L  D  K  I  C  L  N  T  L  Q  S  A  E  P  H  Q  F  Q  S  R  S  L  I  L  H  S  I  M  L  S  I  *  Q  Y  L  P  *  P  *  S  I  V  R  L  L  L  W  W  F  L  L  V  Q  F  T  L  G  T  G  I  *  L  T  S  T  T  S  C  L  Y  T  E  C  E  V  S  L  L  V  M  M  G  G  *  W  I  L  Y  Y  L  S  *  G  F  V  L  T  C  S  S  F  Q  C  Y  F  S  F  L  Y  E  E  T  Q  L  S  F  K  P  Y  S  H  L  D  C  *  W  C  I  N  S  C  P  L  I  R  I  L  F  S  Q  R  Y  Y  K  A  Y  R  L  L  T  T  L  S  K  G  Q  L  I  M  R  F  S  H  N  L  H  L  I  G  I  R  I  I  H  D  L  *  I  K  P  K  I  C  V  D  I  L  Y  I  F  L  F  C  Y  G  S  V  P  A  S  I  R  S  L  S  S  F  L  G  S  S  F  W  W  L  E  T  D  I  W  L  R  T  T  R  A  H  V  I  M  S  N  G  F  H  C  S  S  T  V  C  I  S  T  I  R  S  *  P  I  Y  R  V  N  R  C  C  L  F  T  S  T  S  A  Q  V  P  F  S  K  E  *  S  F  H  *  C  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38059" stop="38706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPLENQDIDSLERPLIHERSSTVIADNNGFLHDASPNEIDFPGQDLSEYPPVSRTSPVPKPKFDFAQYYAFNLTIFALTLIYCSFAPLVVPVGAVYFGYRYLVDKYNFLFVYRVRGFPAGNDGRLMDTVLSIMRFCVDLFLLSMLLFFSVRGDSTKLQAIFTLGLLVVYKLLPSDKDSFQPALLQGIQTIDNIVEGPTDYEVFSQPTFDWDTYNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38714" stop="38926"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKPKICVDILYIFLFCYGSVPASIRSLSSFLGSSFWWLETDIWLRTTRAHVIMSNGFHCSSTVCISTIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="44683" PGL_stop="47577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44683" e_stop="44730"/>
            <exon e_start="44814" e_stop="44887"/>
            <exon e_start="44979" e_stop="45078"/>
            <exon e_start="45172" e_stop="45229"/>
            <exon e_start="46360" e_stop="46431"/>
            <exon e_start="46526" e_stop="46783"/>
            <exon e_start="47482" e_stop="47577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.982" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.649" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="44683" e_stop="44730" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.982">
            <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44814" e_stop="44887" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.717">
            <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44979" e_stop="45078" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45172" e_stop="45229" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.972">
            <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46360" e_stop="46431" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.649" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46783" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="46784" i_stop="47481" i_length="698"/>
          </intron>
          <exon e_serial="7" e_score="0.927">
            <gDNA_exon_boundary e_start="47482" e_stop="47577" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44683" stop="44730"/>
              <exon start="44814" stop="44887"/>
              <exon start="44979" stop="45078"/>
              <exon start="45172" stop="45229"/>
              <exon start="46360" stop="46431"/>
              <exon start="46526" stop="46783"/>
              <exon start="47482" stop="47577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT : TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG : TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG : AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC : AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT : GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG : GTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACC</gDNA_template>
            <first_frame> S  F  T  Y  L  A  D  L  S  Y  T  K  L  S  E  S  :  F  H  S  Q  V  R  D  K  R  R  P  P  D  P  R  I  P  F  E  Y  C  Y  D  M  S :   P  D  E  N  T  S  L  I  P  S  L  S  L  T  M  S  G  G  G  Q  L  A  V  N  D  P  I  I  V  I  S  T  Q  :  N  Q  L  M  Y  C  L  A  I  V  K  S  D  A  L  N  I  I  G   : Q  N  F  M  T  G  Y  R  F  V  F  D  R  E  K  I  I  L  G  W  K  K  F  D   : C  Y  D  I  E  K  I  D  H  F  P  S  Q  P  V  N  T  T  H  V  P  P  A  F  A  V  V  P  G  N  D  N  A  E  K  S  H  E  R  T  T  T  T  R  Q  S  S  F  A  S  S  V  Y  Q  T  C  Y  L  N  L  I  N  C  F  L  A  S  V  I  L  L  L  L  *  L  L  P  *  A  H  S  H  T  E  D  S   : G  C  F  *  W  T  L  Q  T  K  S  L  F  C  D  V  A  *  H  L  R  I  I  G  C  C  I  F  C  *  Y  Y  </first_frame>
            <second_frame>  P  L  P  I  L  R  T  Y  P  I  Q  S  F  Q  K  V :   S  I  L  K  Y  E  T  S  G  V  H  L  I  R  G  S  P  L  N  I  V  M  I  *   : V  L  M  K  I  L  A  *  F  L  V  *  A  *  L  *  V  G  E  A  N  L  L  S  M  I  Q  L  L  S  Y  P  H  R :   I  N  *  C  I  A  W  P  L  *  R  V  M  L  *  I  *  L  D  :  R  T  S  *  L  D  T  A  L  C  L  I  E  K  K  S  S  S  V  G  R  N  L  I  :  V  M  I  L  R  K  *  T  I  S  H  H  N  L  L  I  P  P  M  F  H  L  P  L  L  L  C  L  E  M  I  M  Q  R  N  H  M  K  G  R  Q  L  L  V  K  V  L  L  H  H  L  F  I  K  H  V  I  *  T  S  *  T  A  S  *  H  L  *  Y  C  Y  F  Y  N  C  Y  H  K  L  I  L  T  L  R  I  Q  :  V  V  F  D  G  P  S  K  Q  N  H  Y  F  V  T  *  H  N  I  *  E  *  *  D  V  A  F  S  V  N  T  T </second_frame>
            <third_frame>   L  Y  L  S  C  G  P  I  L  Y  K  A  F  R  K   : F  P  F  S  S  T  R  Q  A  A  S  T  *  S  E  D  P  L  *  I  L  L  *  Y  E  :  S  *  *  K  Y  *  L  D  S  *  F  K  P  N  Y  E  W  G  R  P  T  C  C  Q  *  S  N  Y  C  H  I  H  T   : E  S  T  N  V  L  P  G  H  C  E  E  *  C  S  K  Y  N  W  T :   E  L  H  D  W  I  P  L  C  V  *  S  R  K  N  H  P  R  L  E  E  I  *  L :   L  *  Y  *  E  N  R  P  F  P  I  T  T  C  *  Y  H  P  C  S  T  C  L  C  C  C  A  W  K  *  *  C  R  E  I  T  *  K  D  D  N  Y  S  S  K  F  F  C  I  I  C  L  S  N  M  L  F  E  P  H  K  L  L  P  S  I  C  D  I  A  T  F  I  I  A  T  I  S  S  F  S  H  *  G  F  R :   L  F  L  M  D  P  P  N  K  I  T  I  L  *  R  S  I  T  F  E  N  N  R  M  L  H  F  L  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44683" stop="44730"/>
                    <exon start="44814" stop="44887"/>
                    <exon start="44979" stop="45078"/>
                    <exon start="45172" stop="45229"/>
                    <exon start="46360" stop="46431"/>
                    <exon start="46526" stop="46746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTYLADLSYTKLSESFHSQVRDKRRPPDPRIPFEYCYDMSPDENTSLIPSLSLTMSGGGQLAVNDPIIVISTQNQLMYCLAIVKSDALNIIGQNFMTGYRFVFDREKIILGWKKFDCYDIEKIDHFPSQPVNTTHVPPAFAVVPGNDNAEKSHERTTTTRQSSFASSVYQTCYLNLINCFLASVILLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47167" PGL_stop="46249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47167" e_stop="46948"/>
            <exon e_start="46606" e_stop="46249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="47167" e_stop="46948" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46947" i_stop="46607" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46606" e_stop="46249" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47167" stop="46948"/>
              <exon start="46606" stop="46249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG : GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAGCTGCCAGCTAAAAGTAAGGTGATATACAACCAAAACTTTT</gDNA_template>
            <first_frame> S  H  F  Q  K  S  T  T  I  L  Y  I  K  I  K  *  K  R  V  H  N  V  N  H  R  Q  S  *  G  *  F  E  I  *  S  *  *  R  R  K  C  S  Y  *  F  K  P  K  V  V  D  M  F  *  L  W  L  W  N  E  V  A  L  Y  N  L  T  V  L  L  Q  S  *   : G  T  T  A  K  A  G  G  T  W  V  V  L  T  G  C  D  G  K  W  S  I  F  S  I  S  *  P  A  *  R  P  Q  D  Q  K  Y  E  K  N  N  L  L  V  I  S  K  L  L  E  E  R  T  P  K  T  I  L  T  I  K  F  L  P  T  E  D  D  F  F  S  I  K  H  K  A  V  S  S  H  E  V  L  W  K  K  I  S  K  S  N  N  S  Q  I  S  Q  F  G  N  D  *  Y  N  F  L  A  A  S  *  K  *  G  D  I  Q  P  K  L   </first_frame>
            <second_frame>  H  T  S  K  N  P  L  L  Y  Y  I  *  K  *  N  K  R  E  S  I  M  L  I  I  A  K  A  K  V  D  S  R  F  E  V  S  R  D  V  N  A  V  I  D  S  S  L  R  *  *  I  C  F  S  C  G  C  G  T  R  W  H  C  T  I  S  L  F  Y  C  N  H  K  :  A  Q  Q  Q  R  Q  V  E  H  G  W  Y  *  Q  V  V  M  G  N  G  L  F  S  Q  Y  H  N  L  H  E  G  H  K  T  K  S  M  K  R  I  I  F  L  *  Y  L  S  Y  W  K  K  E  H  Q  K  Q  Y  S  Q  S  N  F  F  Q  P  R  M  I  F  S  R  S  N  T  K  R  Y  P  V  M  K  F  S  G  K  R  S  V  R  A  T  T  V  R  Y  H  N  L  E  M  T  S  T  I  F  *  L  P  A  K  S  K  V  I  Y  N  Q  N  F  </second_frame>
            <third_frame>   T  L  P  K  I  H  Y  Y  I  I  Y  K  N  K  I  K  E  S  P  *  C  *  S  S  P  K  L  R  L  I  R  D  L  K  L  V  E  T  *  M  Q  L  L  I  Q  A  *  G  S  R  Y  V  L  A  V  A  V  E  R  G  G  T  V  Q  S  H  C  S  I  A  I  I  R :   H  N  S  K  G  R  W  N  M  G  G  I  N  R  L  *  W  E  M  V  Y  F  L  N  I  I  T  C  M  K  A  T  R  P  K  V  *  K  E  *  S  S  C  N  I  *  V  I  G  R  K  N  T  K  N  N  T  H  N  Q  I  S  S  N  R  G  *  F  F  L  D  Q  T  Q  S  G  I  Q  S  *  S  S  L  E  K  D  Q  *  E  Q  Q  Q  S  D  I  T  I  W  K  *  L  V  Q  F  F  S  C  Q  L  K  V  R  *  Y  T  T  K  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46517" stop="46302"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQDQKYEKNNLLVISKLLEERTPKTILTIKFLPTEDDFFSIKHKAVSSHEVLWKKISKSNNSQISQFGND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50884" PGL_stop="54973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50884" e_stop="51401"/>
            <exon e_start="51951" e_stop="52086"/>
            <exon e_start="52698" e_stop="52933"/>
            <exon e_start="53165" e_stop="53389"/>
            <exon e_start="53484" e_stop="53619"/>
            <exon e_start="53702" e_stop="53775"/>
            <exon e_start="53855" e_stop="53954"/>
            <exon e_start="54030" e_stop="54090"/>
            <exon e_start="54387" e_stop="54458"/>
            <exon e_start="54536" e_stop="54973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.640" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50884" e_stop="51401" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51951" e_stop="52086" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52698" e_stop="52933" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53165" e_stop="53389" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53484" e_stop="53619" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53702" e_stop="53775" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.640">
            <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53855" e_stop="53954" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54030" e_stop="54090" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54387" e_stop="54458" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54536" e_stop="54973" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50884" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTCTTCCACCATTTTACCCTCTTCTAAAAAACTACAAATGGAAGCAATGCTTAGCTTCTTCAGCTTCAGACTTGTCAACCCATTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT : CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA : CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG : TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA : CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG : TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATT</gDNA_template>
            <first_frame> T  F  F  H  H  F  T  L  F  *  K  T  T  N  G  S  N  A  *  L  L  Q  L  Q  T  C  Q  P  I  F  F  S  F  L  K  I  P  F  Y  L  L  T  F  S  L  S  F  S  L  Y  I  Y  I  S  T  Y  K  E  S  V  F  F  V  F  P  Y  T  N  M  P  N  S  G  K  I  R  N  F  F  L  A  P  I  I  F  L  A  I  L  G  Y  Q  L  K  T  T  D  G  F  G  T  F  G  F  D  I  H  H  R  Y  S  D  P  V  K  G  I  L  D  L  H  G  L  P  E  K  G  T  V  E  Y  Y  S  A  W  T  Q  R  D  R  F  V  K  G  R  R  L  A  D  T  T  N  P  T  V  P  L  A  F  S  G  G  N  E  T  L  R  L  S  S  L  G  F :   L  H  Y  A  N  V  T  V  G  S  P  G  L  S  F  L  V  A  L  D  T  G  S  D  L  F  W  L  P  C  D  C  S  N  C  V  R  A  L  Q  T  R  S  G  G  :  R  I  N  L  N  I  Y  S  P  N  T  S  S  T  S  E  I  V  P  C  N  G  T  L  C  G  Q  N  R  R  C  L  A  S  Q  N  A  C  A  Y  G  V  A  Y  L  S  N  N  T  S  S  S  G  V  L  V  E  D  I  L  H  L  E  T  N  N  A  Q  Q  K  S  I  E  A  P  I  A  L  G :   C  G  I  R  Q  T  G  A  F  L  T  G  A  A  P  N  G  L  F  G  L  G  I  E  N  I  S  V  P  S  M  L  A  S  K  G  L  A  A  N  S  F  S  M  C  F  G  P  D  G  I  G  R  I  V  F  G  D  K  G  S  P  G  Q  G  E  T  P  L  N  L  D  Q  P  H :   P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  S :   A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V  Y  T  *  Y  M  Y  C  K  Y  N  S  D  F  F  L  S  F  F  R  S  R  F  N  I  I  H  F  V  H  </first_frame>
            <second_frame>  L  S  S  T  I  L  P  S  S  K  K  L  Q  M  E  A  M  L  S  F  F  S  F  R  L  V  N  P  F  F  F  P  F  S  K  S  P  F  I  S  S  P  F  L  F  L  S  P  C  I  S  I  Y  Q  H  T  K  N  Q  S  F  L  F  F  L  I  Q  T  C  L  I  L  V  K  F  V  I  F  S  L  P  Q  L  F  S  W  R  F  L  D  T  S  *  R  Q  L  M  G  L  G  H  S  G  L  I  S  I  T  G  I  R  I  R  *  R  V  F  W  T  F  M  G  C  L  R  R  G  L  L  N  I  I  Q  L  G  L  N  V  I  G  L  L  R  A  V  A  L  L  I  Q  L  I  P  Q  C  P  L  L  F  L  E  E  M  K  L  C  G  S  V  L  W  D   : S  C  I  M  Q  M  S  L  W  A  V  L  G  Y  H  F  *  W  H  L  T  L  A  V  T  Y  F  G  Y  H  V  I  A  A  T  V  C  V  P  F  R  H  A  V  E  D :   E  *  I  L  I  S  T  A  L  I  R  L  Q  R  V  R  L  F  R  A  M  A  L  C  V  D  K  I  D  D  A  *  L  R  R  M  H  V  L  M  E  L  H  I  S  P  I  T  P  H  H  Q  G  Y  W  W  K  T  S  C  T  *  K  Q  I  M  L  N  K  K  A  L  K  L  Q  L  L  W   : V  V  G  *  D  K  Q  V  H  F  *  L  V  Q  L  L  M  V  Y  L  D  L  V  L  K  I  Y  L  S  Q  A  C  *  Q  A  K  V  L  L  Q  I  L  S  L  C  A  L  D  L  M  V  L  E  E  *  F  L  E  I  K  E  V  Q  A  K  E  K  H  H  S  I  L  I  N  H   : T  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *   : V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  I  P  D  I  C  I  V  N  I  T  L  I  S  F  C  P  F  S  V  Q  D  S  I  *  Y  I  S  F  I </second_frame>
            <third_frame>   F  L  P  P  F  Y  P  L  L  K  N  Y  K  W  K  Q  C  L  A  S  S  A  S  D  L  S  T  H  F  F  F  L  S  Q  N  P  L  L  S  P  H  L  F  S  F  F  L  P  V  Y  L  Y  I  N  I  Q  R  I  S  L  F  C  F  S  L  Y  K  H  A  *  F  W  *  N  S  *  F  F  P  C  P  N  Y  F  L  G  D  S  W  I  P  V  E  D  N  *  W  V  W  D  I  R  V  *  Y  P  S  P  V  F  G  S  G  K  G  Y  F  G  P  S  W  V  A  *  E  G  D  C  *  I  L  F  S  L  D  S  T  *  S  V  C  *  G  P  S  P  C  *  Y  N  *  S  H  S  A  P  C  F  F  W  R  K  *  N  F  A  A  Q  F  F  G  I  :  L  A  L  C  K  C  H  C  G  Q  S  W  A  I  I  S  S  G  T  *  H  W  Q  *  L  I  L  A  T  M  *  L  Q  Q  L  C  A  C  P  S  D  T  Q  W  R   : T  N  K  S  *  Y  L  Q  P  *  Y  V  F  N  E  *  D  C  S  V  Q  W  H  F  V  W  T  K  *  T  M  L  S  F  A  E  C  M  C  L  W  S  C  I  S  L  Q  *  H  L  I  I  R  G  T  G  G  R  H  L  A  L  R  N  K  *  C  S  T  K  K  H  *  S  S  N  C  S  G  :  L  W  D  K  T  N  R  C  I  F  N  W  C  S  S  *  W  S  I  W  T  W  Y  *  K  Y  I  C  P  K  H  V  S  K  Q  R  S  C  C  K  F  F  L  Y  V  L  W  T  *  W  Y  W  K  N  S  F  W  R  *  R  K  S  R  P  R  R  N  T  T  Q  S  *  S  T  T  :  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  :  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L  Y  L  I  Y  V  L  *  I  *  L  *  F  L  S  V  L  F  P  F  K  I  Q  Y  N  T  F  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50941" stop="51401"/>
                    <exon start="51951" stop="52086"/>
                    <exon start="52698" stop="52933"/>
                    <exon start="53165" stop="53389"/>
                    <exon start="53484" stop="53619"/>
                    <exon start="53702" stop="53775"/>
                    <exon start="53855" stop="53954"/>
                    <exon start="54030" stop="54090"/>
                    <exon start="54387" stop="54458"/>
                    <exon start="54536" stop="54801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1764</number_coding_nucleotides>
                  <number_encoded_amino_acids>588</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQLQTCQPIFFSFLKIPFYLLTFSLSFSLYIYISTYKESVFFVFPYTNMPNSGKIRNFFLAPIIFLAILGYQLKTTDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGTVEYYSAWTQRDRFVKGRRLADTTNPTVPLAFSGGNETLRLSSLGFLHYANVTVGSPGLSFLVALDTGSDLFWLPCDCSNCVRALQTRSGGRINLNIYSPNTSSTSEIVPCNGTLCGQNRRCLASQNACAYGVAYLSNNTSSSGVLVEDILHLETNNAQQKSIEAPIALGCGIRQTGAFLTGAAPNGLFGLGIENISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPGQGETPLNLDQPHPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGISANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="54973" PGL_stop="54743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54973" e_stop="54743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="54973" e_stop="54743" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54973" stop="54743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAACGAAATGTATTATATTGAATCTTGAACGGAAAAAGGACAGAAAGAAATCAGAGTTATATTTACAATACATATATCAGGTATAAACTGCAATATCAAAAATGCTGTGGGACACTTCAATTCTATGCTGTAACAGAACTCAATATTATACAGAGGACAAATAAAAGCCTCAAGAAGAAATAATAATCAAATAATAGTTGAAAAAGGAAAATATAGCCATCATAAGTT</gDNA_template>
            <first_frame> N  E  R  N  V  L  Y  *  I  L  N  G  K  R  T  E  R  N  Q  S  Y  I  Y  N  T  Y  I  R  Y  K  L  Q  Y  Q  K  C  C  G  T  L  Q  F  Y  A  V  T  E  L  N  I  I  Q  R  T  N  K  S  L  K  K  K  *  *  S  N  N  S  *  K  R  K  I  *  P  S  *  V </first_frame>
            <second_frame>  M  N  E  M  Y  Y  I  E  S  *  T  E  K  G  Q  K  E  I  R  V  I  F  T  I  H  I  S  G  I  N  C  N  I  K  N  A  V  G  H  F  N  S  M  L  *  Q  N  S  I  L  Y  R  G  Q  I  K  A  S  R  R  N  N  N  Q  I  I  V  E  K  G  K  Y  S  H  H  K   </second_frame>
            <third_frame>   *  T  K  C  I  I  L  N  L  E  R  K  K  D  R  K  K  S  E  L  Y  L  Q  Y  I  Y  Q  V  *  T  A  I  S  K  M  L  W  D  T  S  I  L  C  C  N  R  T  Q  Y  Y  T  E  D  K  *  K  P  Q  E  E  I  I  I  K  *  *  L  K  K  E  N  I  A  I  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030D08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59917" PGL_stop="55229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59917" e_stop="59470"/>
            <exon e_start="57886" e_stop="57820"/>
            <exon e_start="57598" e_stop="57436"/>
            <exon e_start="57317" e_stop="57189"/>
            <exon e_start="56763" e_stop="56060"/>
            <exon e_start="55925" e_stop="55229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59917" e_stop="59470" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59469" i_stop="57887" i_length="1583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57886" e_stop="57820" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57819" i_stop="57599" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="57598" e_stop="57436" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57435" i_stop="57318" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57317" e_stop="57189" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56763" e_stop="56060" e_length="704"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="55925" e_stop="55229" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59917" stop="59470"/>
              <exon start="57886" stop="57820"/>
              <exon start="57598" stop="57436"/>
              <exon start="57317" stop="57189"/>
              <exon start="56763" stop="56060"/>
              <exon start="55925" stop="55229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG : AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG : GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG : GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG : CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG : GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTG</gDNA_template>
            <first_frame> G  F  *  G  F  R  E  K  K  N  V  F  M  E  S  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E   : E  E  E  K  D  D  D  E  M  D  N  E  K  L  R  A  Y  E  M  S  R  L  R :   Y  Y  Y  A  V  V  E  C  D  S  S  A  T  A  D  Y  L  Y  K  T  C  D  G  V  E  F  E  R  T  S  N  K  L  D  L  R  F  I  P  D  S  M  E  F  K  H  Q  P  R  D  I  A  T  E  :  A  P  A  D  Y  E  G  L  D  F  H  T  R  A  L  Q  H  S  N  I  E  L  T  W  D  E  D  E  P  Q  R  I  R  T  L  K  R  Q  F  N  D  K  Q  :  L  A  D  M  E  L  K  E  F  L  A  S  D  E  S  G  S  D  D  S  E  E  G  D  D  D  T  E  D  K  S  A  K  R  K  K  K  H  D  T  Y  R  A  L  L  Q  S  G  E  G  S  D  G  N  N  E  D  D  D  Q  D  M  E  V  T  F  N  T  G  L  E  D  L  S  K  R  I  L  E  K  K  D  K  Q  S  E  T  V  W  E  A  Y  L  R  K  K  R  E  K  K  K  S  R  K  G  N  T  K  D  S  S  E  D  E  S  S  D  S  D  Q  E  P  I  D  E  P  E  D  F  F  I  E  E  P  S  A  K  G  D  K  D  S  Q  R  K  S  T  R  K  G  K  Q  S  L  E  A  S  E  E  A  E  A  S  R  A  E  L  E  L  L  L  A  D  D  K  G  G  D  P  N  L  K  G  Y  N  M  K  P  K  K  A  K  G  K  K  G  K  G  T  P  V  E  D  K  L  P  T  I  D  Y  E  D  P  R  F  S  S  L  F  K  S  H  L  F  A  L  D  P  T  D  P  Q  F  K  R :   S  A  A  Y  A  R  Q  L  A  Q  K  Q  H  K  V  E  E  E  I  V  S  A  K  Q  Q  P  G  V  T  R  K  L  E  S  A  T  N  E  K  L  Q  S  G  D  L  P  S  R  K  E  K  H  E  L  S  S  L  V  K  S  I  K  M  K  S  Q  Q  L  S  L  S  S  Q  G  K  A  V  V  K  N  E  K  S  Q  A  M  S  K  N  I  D  G  E  G  G  K  K  E  N  E  K  S  R  A  R  A  K  K  K  D  E  K  R  V  K  *  E  S  E  K  *  G  Y  I  N  F  D  Q  R  L  L  M  G  L  D  R  R  G  S  *  K  W  I  M  V  Q  Y  G  *  I  V  A  L  V  N  L  N  T  *  Q  L  *  L  F  L  L  Y  F  L  L  Y  G  L  Y  L  W  L  H  H  C  F  A  V  L  T  C  R  D  V  R  C  T  M  F  N  F  F  F  F  T  V  V  D  C  K  L  N  V  I  P  L  Y  S  S  *  D  S  Q  Y  S  D  F  C  S  D  Y  *  A  E  V  C  L </first_frame>
            <second_frame>  G  F  R  V  L  E  R  R  R  T  Y  S  W  S  Q  K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  :  K  K  K  K  M  M  M  R  W  T  M  R  N  Y  A  P  M  R  *  V  G  S   : G  I  I  M  L  W  W  N  A  I  Q  V  L  Q  L  I  I  F  T  K  L  V  M  G  L  S  L  R  E  H  Q  T  N  *  I  *  G  L  F  Q  I  P  W  N  S  S  I  N  H  V  T  L  Q  Q  R :   P  L  Q  I  M  K  V  *  I  F  T  L  E  L  C  S  I  A  I  L  N  L  H  G  M  R  M  S  H  N  A  S  G  P  *  R  D  S  S  M  I  N  S :   L  Q  I  W  S  *  K  S  F  W  L  L  M  R  V  E  V  M  I  V  R  K  V  M  M  T  Q  K  I  N  L  P  K  G  R  K  N  M  I  P  T  V  R  Y  S  S  L  G  R  V  Q  M  E  I  T  R  T  M  T  R  T  W  R  S  H  L  T  L  D  W  K  I  *  A  N  V  S  *  K  R  R  I  N  S  R  K  L  C  G  K  L  I  S  E  R  K  G  R  K  R  S  P  G  K  V  T  P  R  I  H  Q  K  M  R  A  A  I  V  I  K  N  L  *  M  N  L  R  T  S  S  L  K  S  L  P  Q  K  G  I  R  I  P  N  V  R  A  P  G  K  G  S  R  A  L  K  H  L  K  K  L  K  Q  V  E  Q  S  L  S  Y  Y  L  Q  M  T  K  E  E  T  L  T  *  R  V  T  T  *  N  L  K  R  R  R  G  R  R  V  K  E  L  Q  *  R  T  S  C  Q  L  *  I  M  K  I  H  G  F  H  L  S  L  N  H  T  S  L  H  W  T  P  Q  I  L  S  S  N   : G  V  Q  L  M  L  V  S  W  H  K  S  S  T  R  S  K  K  K  L  *  V  Q  N  N  S  P  E  *  L  E  N  *  S  Q  Q  Q  M  K  N  C  S  L  V  I  C  L  Q  E  R  R  S  T  S  Y  L  L  *  L  N  L  L  R  *  N  H  N  N  Y  H  C  P  L  K  V  R  R  *  *  R  M  K  K  V  K  Q  C  Q  R  T  S  M  E  R  E  E  R  R  R  T  K  K  V  E  Q  G  Q  R  R  K  M  K  S  E  *  N  K  R  V  K  S  K  V  I  *  I  L  I  K  D  Y  S  W  D  *  T  D  E  V  P  E  N  G  S  W  F  S  M  G  E  *  W  P  *  *  I  S  I  R  S  N  F  N  C  F  Y  F  I  F  Y  C  M  A  Y  I  Y  G  C  I  I  V  L  L  S  *  L  A  E  M  Y  V  V  P  C  S  I  F  F  F  L  Q  *  S  T  V  N  L  M  *  F  L  Y  T  R  L  E  I  H  N  T  A  T  S  V  L  I  I  E  L  K  F  V   </second_frame>
            <third_frame>   V  L  G  F  *  R  E  E  E  R  I  H  G  V  K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R :   R  R  K  R  *  *  *  D  G  Q  *  E  I  T  R  L  *  D  E  S  A  Q  :  V  L  L  C  C  G  G  M  R  F  K  C  Y  S  *  L  S  L  Q  N  L  *  W  G  *  V  *  E  N  I  K  Q  I  R  F  E  V  Y  S  R  F  H  G  I  Q  A  S  T  T  *  H  C  N  R   : G  P  C  R  L  *  R  S  R  F  S  H  S  S  F  A  A  *  Q  Y  *  T  Y  M  G  *  G  *  A  T  T  H  Q  D  L  E  E  T  V  Q  *  *  T   : A  C  R  Y  G  V  E  R  V  F  G  F  *  *  E  W  K  *  *  *  *  G  R  *  *  *  H  R  R  *  I  C  Q  K  E  E  K  T  *  Y  L  P  C  V  T  P  V  W  G  G  F  R  W  K  *  R  G  R  *  P  G  H  G  G  H  I  *  H  W  I  G  R  S  K  Q  T  Y  P  R  K  E  G  *  T  V  G  N  C  V  G  S  L  S  Q  K  E  K  G  E  K  E  V  Q  E  R  *  H  Q  G  F  I  R  R  *  E  Q  R  *  *  S  R  T  Y  R  *  T  *  G  L  L  H  *  R  A  F  R  K  R  G  *  G  F  P  T  *  E  H  Q  E  R  E  A  E  P  *  S  I  *  R  S  *  S  K  *  S  R  A  *  A  I  T  C  R  *  Q  R  R  R  P  *  L  E  G  L  Q  H  E  T  *  K  G  E  G  E  E  G  *  R  N  S  S  R  G  Q  V  A  N  Y  R  L  *  R  S  T  V  F  I  S  L  *  I  T  P  L  C  I  G  P  H  R  S  S  V  Q  T  :  E  C  S  L  C  S  S  V  G  T  K  A  A  Q  G  R  R  R  N  C  E  C  K  T  T  A  R  S  N  *  K  I  R  V  S  N  K  *  K  I  A  V  W  *  F  A  F  K  K  G  E  A  R  A  I  F  F  S  *  I  Y  *  D  E  I  T  T  I  I  I  V  L  S  R  *  G  G  S  K  E  *  K  K  S  S  N  V  K  E  H  R  W  R  G  R  K  E  G  E  R  K  K  S  S  K  G  K  E  E  R  *  K  A  S  K  I  R  E  *  K  V  R  L  Y  K  F  *  S  K  T  T  H  G  I  R  Q  T  R  F  L  K  M  D  H  G  S  V  W  V  N  S  G  L  S  E  S  Q  Y  V  A  T  L  I  V  F  T  L  F  F  T  V  W  P  I  F  M  V  A  S  L  F  C  C  L  N  L  Q  R  C  T  L  Y  H  V  Q  F  F  F  F  Y  S  S  R  L  *  T  *  C  N  S  S  I  L  V  L  R  F  T  I  Q  R  L  L  F  *  L  L  S  *  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59908" stop="59470"/>
                    <exon start="57886" stop="57820"/>
                    <exon start="57598" stop="57436"/>
                    <exon start="57317" stop="57189"/>
                    <exon start="56763" stop="56060"/>
                    <exon start="55925" stop="55577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1848</number_coding_nucleotides>
                  <number_encoded_amino_acids>616</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFREKKNVFMESKNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEKDDDEMDNEKLRAYEMSRLRYYYAVVECDSSATADYLYKTCDGVEFERTSNKLDLRFIPDSMEFKHQPRDIATEAPADYEGLDFHTRALQHSNIELTWDEDEPQRIRTLKRQFNDKQLADMELKEFLASDESGSDDSEEGDDDTEDKSAKRKKKHDTYRALLQSGEGSDGNNEDDDQDMEVTFNTGLEDLSKRILEKKDKQSETVWEAYLRKKREKKKSRKGNTKDSSEDESSDSDQEPIDEPEDFFIEEPSAKGDKDSQRKSTRKGKQSLEASEEAEASRAELELLLADDKGGDPNLKGYNMKPKKAKGKKGKGTPVEDKLPTIDYEDPRFSSLFKSHLFALDPTDPQFKRSAAYARQLAQKQHKVEEEIVSAKQQPGVTRKLESATNEKLQSGDLPSRKEKHELSSLVKSIKMKSQQLSLSSQGKAVVKNEKSQAMSKNIDGEGGKKENEKSRARAKKKDEKRVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55544" stop="55311"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKTTHGIRQTRFLKMDHGSVWVNSGLSESQYVATLIVFTLFFTVWPIFMVASLFCCLNLQRCTLYHVQFFFFYSSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59615" e_stop="59240"/>
            <exon e_start="59143" e_stop="59071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="59615" e_stop="59240" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59239" i_stop="59144" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="59143" e_stop="59071" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59615" stop="59240"/>
              <exon start="59143" stop="59071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAG : AAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAA</gDNA_template>
            <first_frame> T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R  R  R  R  R  R  R  D  Q  E  *  Q  W  D  E  *  G  R  N  *  R  P  *  I  E  E  S  W  R  R  I  I  R  V  R  R  R  *  R  *  R  G  G  K  *  *  F  T  G  K  Y  V  R  F  R  F  G  F  *  F  *  *  *  N  G  R  S  F  F  R  G  G  R  H  F  H  S   : E  R  G  C  A  *  D  *  Q  G  N  *  E  A  C  C  C  *  H  G  L  G  *  S   </first_frame>
            <second_frame>  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E  E  E  E  E  E  E  E  T  K  S  D  S  G  T  S  E  E  E  I  E  D  H  K  L  K  K  V  G  A  V  S  S  E  S  E  E  D  E  D  E  E  V  G  S  D  N  S  L  A  S  T  S  D  S  A  S  D  S  D  S  D  D  E  M  D  E  V  S  S  E  E  E  D  T  F  I  Q  :  K  E  D  V  P  E  I  D  K  E  T  K  R  L  A  V  V  N  M  D  W  G  R  V  </second_frame>
            <third_frame>   P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  K  K  K  K  K  K  R  P  R  V  T  V  G  R  V  R  K  K  L  K  T  I  N  *  R  K  L  A  P  Y  H  Q  S  P  K  K  M  K  M  K  R  W  E  V  I  I  H  W  Q  V  R  P  I  P  L  R  I  L  I  L  M  M  K  W  T  K  F  L  Q  R  R  K  T  L  S  F  R :   K  R  M  C  L  R  L  T  R  K  L  R  G  L  L  L  L  T  W  I  G  V  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59614" stop="59240"/>
                    <exon start="59143" stop="59072"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEEEEETKSDSGTSEEEIEDHKLKKVGAVSSESEEDEDEEVGSDNSLASTSDSASDSDSDDEMDEVSSEEEDTFIQKEDVPEIDKETKRLAVVNMDWGRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="64499" PGL_stop="65758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64499" e_stop="64695"/>
            <exon e_start="64770" e_stop="64958"/>
            <exon e_start="65082" e_stop="65244"/>
            <exon e_start="65328" e_stop="65758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="0.995"/>
          <exon-intron don_prob="0.912" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="64499" e_stop="64695" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="64696" i_stop="64769" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64770" e_stop="64958" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64959" i_stop="65081" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65082" e_stop="65244" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.973">
            <gDNA_intron_boundary i_start="65245" i_stop="65327" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65328" e_stop="65758" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64499" stop="64695"/>
              <exon start="64770" stop="64958"/>
              <exon start="65082" stop="65155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65096" stop="65244"/>
              <exon start="65328" stop="65758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG : GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA : TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG : GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGT</gDNA_template>
            <first_frame> L  F  H  Y  *  A  H  L  F  F  S  P  S  T  I  L  K  A  M  H  L  V  P  I  T  M  Q  K  H  A  L  K  L  K  T  *  *  *  R  L  L  R  R  K  H  R  K  T  E  Q  C  P  L  H  F  *  G  C  I  S  M  I  V  S  Y  G :   V  V  M  L  L  F  C  *  A  P  R  G  K  T  P  R  K  R  T  R  L  L  M  V  L  C  T  D  S  M  L  L  M  V  Q  R  E  Q  L  K  L  Y  V  L  A  *  C  L  V  L  I  F  *  R  L  L  Q  E  M  Q  L  C  Y :   Q  A  D  L  T  G  R  C  L  K  E  E  K  T  D  E  Y  Q  E  L  V  K  Q  H  C  F  Q  S  L  H  S  T  F  L  N  S  N  K  A  S  I  K  E  V  S  H  *  T  T  W  W  L  S  *  :  V  R  T  L  *  D  L  P  I  A  H  H  L  *  T  V  Y  T  T  S  T  P  H  M  T  S  I  L  H  Y  V  H  R  L  Q  Q  A  *  R  A  Y  V  H  S  K  T  G  Q  K  T  Q  E  *  A  M  I  L  H  Q  Q  H  L  I  I  L  I  T  G  *  F  Y  K  R  K  V  C  Y  F  R  I  I  H  C  S  L  Y  Q  K  R  R  A  *  F  I  S  L  L  P  Q  K  Q  L  F  I  R  H  F  L  I  L  *  L  R  *  V  A  L  Q  E  V  K  K  L  E  K  I  A  G  L  *  T  N  *  L  L  L  I  L  I  *  Y  F  Y   </first_frame>
            <second_frame>  C  S  I  I  E  H  I  Y  F  F  L  H  L  L  F  S  K  Q  C  T  *  F  Q  L  L  C  K  N  M  P  S  S  *  R  H  S  N  E  G  C  *  G  G  S  T  E  R  Q  N  S  A  R  Y  T  S  K  D  A  F  P  *  L  F  P  T   : G  L  *  C  F  Y  F  V  E  L  Q  G  E  K  H  R  G  K  G  R  A  S  *  W  F  F  A  R  I  L  C  Y  *  W  C  K  E  S  S  *  S  Y  M  S  W  R  S  V  L  C  *  Y  F  S  V  C  C  K  R  C  S  C  V   : I  R  R  T  L  L  E  G  A  *  R  K  K  R  R  T  N  I  K  S  *  *  N  N  T  A  S  K  A  Y  I  Q  H  F  S  T  P  T  K  L  P  S  K  R  S  L  T  R  R  L  G  G  S  L  R :   C  A  H  S  R  I  Y  P  L  L  I  I  Y  E  P  Y  I  Q  L  Q  R  H  T  *  H  R  S  Y  T  T  S  I  V  C  S  K  L  E  G  H  M  S  T  Q  K  Q  G  K  K  R  R  N  K  Q  *  S  F  T  N  N  I  *  *  Y  S  L  Q  A  N  S  T  K  E  K  F  V  I  F  G  S  F  I  A  H  Y  T  K  N  E  E  L  S  L  *  V  C  Y  L  K  S  S  F  S  *  G  I  F  *  F  Y  D  *  D  E  *  P  Y  R  R  S  R  S  *  K  K  L  Q  G  C  K  L  I  N  Y  Y  *  F  *  F  D  I  F  M  </second_frame>
            <third_frame>   V  P  L  L  S  T  F  I  F  F  S  I  Y  Y  S  Q  S  N  A  L  S  S  N  Y  Y  A  K  T  C  P  Q  A  E  D  I  V  M  K  V  V  K  E  E  A  Q  K  D  R  T  V  P  A  T  L  L  R  M  H  F  H  D  C  F  L  R  :  G  C  D  A  S  I  L  L  S  S  K  G  K  N  T  A  E  K  D  A  P  P  N  G  S  L  H  G  F  Y  V  I  D  G  A  K  R  A  V  E  A  I  C  P  G  V  V  S  C  A  D  I  L  A  F  A  A  R  D  A  V  V  L  :  S  G  G  P  Y  W  K  V  P  K  G  R  K  D  G  R  I  S  R  A  S  E  T  T  L  L  P  K  P  T  F  N  I  S  Q  L  Q  Q  S  F  H  Q  R  G  L  S  L  D  D  L  V  A  L  L   : G  A  H  T  L  G  F  T  H  C  S  S  F  M  N  R  I  Y  N  F  N  A  T  H  D  I  D  P  T  L  R  P  S  F  A  A  S  L  K  G  I  C  P  L  K  N  R  A  K  N  A  G  I  S  N  D  P  S  P  T  T  F  D  N  T  H  Y  R  L  I  L  Q  K  K  S  L  L  F  S  D  H  S  L  L  T  I  P  K  T  K  S  L  V  Y  K  F  A  T  S  K  A  A  F  H  K  A  F  S  N  S  M  I  K  M  S  S  L  T  G  G  Q  E  V  R  K  N  C  R  V  V  N  *  L  I  I  I  N  S  N  L  I  F  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64501" stop="64695"/>
                    <exon start="64770" stop="64958"/>
                    <exon start="65082" stop="65244"/>
                    <exon start="65328" stop="65722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLLSTFIFFSIYYSQSNALSSNYYAKTCPQAEDIVMKVVKEEAQKDRTVPATLLRMHFHDCFLRGCDASILLSSKGKNTAEKDAPPNGSLHGFYVIDGAKRAVEAICPGVVSCADILAFAARDAVVLSGGPYWKVPKGRKDGRISRASETTLLPKPTFNISQLQQSFHQRGLSLDDLVALLGAHTLGFTHCSSFMNRIYNFNATHDIDPTLRPSFAASLKGICPLKNRAKNAGISNDPSPTTFDNTHYRLILQKKSLLFSDHSLLTIPKTKSLVYKFATSKAAFHKAFSNSMIKMSSLTGGQEVRKNCRVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="67415" PGL_stop="70890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67415" e_stop="67818"/>
            <exon e_start="68582" e_stop="68700"/>
            <exon e_start="69799" e_stop="69856"/>
            <exon e_start="69979" e_stop="70056"/>
            <exon e_start="70490" e_stop="70890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67415" e_stop="67818" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.826">
            <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68582" e_stop="68700" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69799" e_stop="69856" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.833" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69979" e_stop="70056" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="70490" e_stop="70890" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67415" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAACTGAAAGAAGAGACTCATTTAGATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG : TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG : GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG : TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG : GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGT</gDNA_template>
            <first_frame> R  K  L  K  E  E  T  H  L  D  R  L  I  L  R  K  S  *  N  G  T  N  L  *  P  F  V  I  *  N  L  V  L  K  L  F  F  Q  E  I  L  *  L  G  P  T  R  N  R  D  I  *  S  L  S  S  C  I  F  W  K  P  H  S  *  N  L  V  E  Y  P  E  I  L  F  I  H  G  I  C  S  L  L  P  Y  C  P  G  *  Y  Y  K  L  P  H  R  Y  F  H  P  Y  P  P  L  F  I  F  G  E  F  F  F  F  F  L  K  P  Q  N  L  Q  P  L  *  F  P  Q  E  F  E  N  R  T  Q  S :   I  C  *  G  S  S  I  *  R  Q  R  S  S  R  C  F  H  Q  L  Q  A  C  T  V  T  N  Y  R  P  E  S  L  S  L  *  G  F  K  T   : G  C  S  N  C  R  C  Y  G  K  E  V  W  S  *  Y  N  S  C  C :   Y  *  *  K  G  E  R  S  I  P  R  A  R  D  T  T  S  K  H  P  M  A  F  S  *  R :   W  I  S  R  I  Q  A  V  R  A  A  R  *  R  K  Q  A  N  S  H  Y  W  *  N  C  *  *  Y  E  L  G  Y  G  S  Y  E  H  G  S  Y  P  F  Q  A  C  R  C  K  P  S  C  *  V  H  P  L  P  C  I  A  F  A  P  M  K  K  K  C  I  *  K  A  S  G  A  R  F  *  D  Q  G  Y  *  P  F  D  T  V  L  Y  F  I  D  H  E  L  K  F  Y  I  C  G  K  W  *  *  N  R  T  N  K  L  V  H  C  Y  L  L  L  N  H  V  E  R  Y  E  Y  V  V  Y  S  L  K  </first_frame>
            <second_frame>  E  N  *  K  K  R  L  I  *  I  D  *  F  *  E  N  P  K  M  A  P  I  C  N  L  L  L  S  R  I  *  F  *  N  Y  F  S  K  K  F  C  D  *  A  R  L  E  I  V  I  Y  S  P  Y  H  P  A  Y  S  G  S  H  T  H  K  I  L  S  S  T  Q  K  S  Y  S  S  M  A  F  A  H  C  F  L  T  V  P  A  D  T  T  N  F  H  T  A  T  S  I  L  T  R  P  F  S  S  S  V  S  S  S  F  S  S  S  N  L  K  T  C  S  L  S  N  F  H  K  N  L  R  I  G  L  K   : V  S  V  K  A  Q  A  S  E  D  S  A  A  A  D  A  F  T  N  F  K  H  V  L  L  P  I  T  D  R  N  P  Y  L  S  E  G  S  R  Q  :  A  A  A  T  A  A  A  M  A  K  K  Y  G  A  D  I  T  V  V   : V  I  D  E  K  G  K  E  A  Y  P  E  H  E  T  Q  L  A  S  I  R  W  H  L  A  E   : G  G  Y  Q  E  F  K  L  L  E  R  L  G  E  G  S  K  P  T  A  I  I  G  E  I  A  D  D  M  N  L  D  M  V  V  M  S  M  E  A  I  H  S  K  H  V  D  A  N  L  L  A  E  F  I  P  C  P  V  L  L  L  P  L  *  R  R  N  V  S  E  K  P  V  V  L  G  F  R  I  R  D  I  N  L  L  I  L  F  S  T  S  L  T  M  N  S  S  F  T  F  V  V  S  G  N  R  T  E  Q  T  S  W  F  I  A  I  C  F  L  I  M  W  R  D  M  N  M  L  F  T  L  *  S </second_frame>
            <third_frame>   K  T  E  R  R  D  S  F  R  *  T  N  F  K  K  I  L  K  W  H  Q  F  V  T  F  C  Y  L  E  F  S  F  K  T  I  F  P  R  N  F  V  I  R  P  D  S  K  S  *  Y  I  V  L  I  I  L  H  I  L  E  A  T  L  I  K  S  C  R  V  P  R  N  L  I  H  P  W  H  L  L  T  A  S  L  L  S  R  L  I  L  Q  T  S  T  P  L  L  P  S  L  P  A  P  F  H  L  R  *  V  L  L  F  L  P  Q  T  S  K  L  A  A  S  L  I  S  T  R  I  *  E  S  D  S  K  :  Y  L  L  R  L  K  H  L  K  T  A  Q  Q  Q  M  L  S  P  T  S  S  M  Y  C  Y  Q  L  Q  T  G  I  L  I  S  L  R  V  Q  D  R :   L  Q  Q  L  P  L  L  W  Q  R  S  M  E  L  I  *  Q  L  L  :  L  L  M  K  R  G  K  K  H  T  Q  S  T  R  H  N  *  Q  A  S  D  G  I  *  L  K  :  V  D  I  K  N  S  S  C  *  S  G  *  V  K  E  A  S  Q  Q  P  L  L  V  K  L  L  M  I  *  T  W  I  W  *  L  *  A  W  K  L  S  I  P  S  M  *  M  Q  T  F  L  L  S  S  S  L  A  L  Y  C  F  C  P  Y  E  E  E  M  Y  L  K  S  Q  W  C  S  V  L  G  S  G  I  L  T  F  *  Y  C  S  L  L  H  *  P  *  T  Q  V  L  H  L  W  *  V  V  I  E  Q  N  K  Q  A  G  S  L  L  F  A  S  *  S  C  G  E  I  *  I  C  C  L  L  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67545" stop="67818"/>
                    <exon start="68582" stop="68700"/>
                    <exon start="69799" stop="69856"/>
                    <exon start="69979" stop="70056"/>
                    <exon start="70490" stop="70683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARLEIVIYSPYHPAYSGSHTHKILSSTQKSYSSMAFAHCFLTVPADTTNFHTATSILTRPFSSSVSSSFSSSNLKTCSLSNFHKNLRIGLKVSVKAQASEDSAAADAFTNFKHVLLPITDRNPYLSEGSRQAAATAAAMAKKYGADITVVVIDEKGKEAYPEHETQLASIRWHLAEGGYQEFKLLERLGEGSKPTAIIGEIADDMNLDMVVMSMEAIHSKHVDANLLAEFIPCPVLLLPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70684" stop="70887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNVSEKPVVLGFRIRDINLLILFSTSLTMNSSFTFVVSGNRTEQTSWFIAICFLIMWRDMNMLFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="73252" PGL_stop="71465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73252" e_stop="72987"/>
            <exon e_start="72917" e_stop="72622"/>
            <exon e_start="71576" e_stop="71465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.996"/>
          <exon-intron don_prob="0.979" acc_prob="0.886" e_score="0.993"/>
          <exon-only e_score="0.866"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73252" e_stop="72987" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72986" i_stop="72918" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="72917" e_stop="72622" e_length="296"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.886">
            <gDNA_intron_boundary i_start="72621" i_stop="71577" i_length="1045"/>
          </intron>
          <exon e_serial="3" e_score="0.866">
            <gDNA_exon_boundary e_start="71576" e_stop="71465" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73252" stop="72987"/>
              <exon start="72917" stop="72622"/>
              <exon start="71576" stop="71465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG : GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA : GTTCTAGCACCATTGCCAATTGGATTCTCAGTGTTTATGGTGCACTTGGCCACCATTCCCATCACTGGCACTGGCATCAATCCTGCTAGGAGTTTCGGAGCTGCTGTCATTT</gDNA_template>
            <first_frame> T  L  I  I  R  Y  G  E  R  L  R  *  S  T  F  S  S  A  V  S  N  S  G  A  L  Q  L  V  F  L  Q  S  L  D  C  *  I  C  R  D  A  S  F  P  L  R  *  R  G  Y  C  Y  R  P  Q  E  A  T  W  S  L  R  W  R  W  T  C  W  Y  C  M  G  F  W  W  H  D  F  C  S  R  V  F  H  C  W  D  F  W :   W  A  Y  K  P  G  S  D  V  W  V  I  T  S  K  E  G  V  I  T  K  S  G  G  V  Y  G  G  A  V  L  R  S  H  L  R  R  W  F  S  E  R  C  D  E  G  *  L  Y  E  A  W  W  R  C  *  Y  R  R  S  W  L  L  N  G  R  S  I  R  C  *  D  Y  C  Y  F  P  S  H  V  Y  R  I  F  R  H  R  R  Q  K  E  S  T  *  F  T  R  P   : S  S  S  T  I  A  N  W  I  L  S  V  Y  G  A  L  G  H  H  S  H  H  W  H  W  H  Q  S  C  *  E  F  R  S  C  C  H   </first_frame>
            <second_frame>  H  *  *  *  D  M  V  K  D  Y  V  D  P  P  S  A  P  L  F  Q  T  A  E  L  Y  N  W  S  F  Y  R  A  L  I  A  E  F  V  A  T  L  L  F  L  Y  V  S  V  A  T  V  I  G  H  K  K  Q  L  G  P  C  D  G  V  G  L  V  G  I  A  W  A  F  G  G  M  I  F  V  L  V  Y  S  T  A  G  I  S   : G  G  H  I  N  P  A  V  T  F  G  L  L  L  A  R  K  V  S  L  L  R  A  V  A  Y  M  V  A  Q  C  L  G  A  I  C  G  V  G  L  V  K  G  V  M  K  D  D  Y  T  K  H  G  G  G  A  N  T  V  A  V  G  Y  S  T  G  A  A  L  G  A  E  I  I  A  T  F  L  L  M  Y  T  V  F  S  A  T  D  A  K  R  K  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F  S  V  F  M  V  H  L  A  T  I  P  I  T  G  T  G  I  N  P  A  R  S  F  G  A  A  V  I  </second_frame>
            <third_frame>   T  N  N  K  I  W  *  K  T  T  L  I  H  L  Q  L  R  C  F  K  Q  R  S  S  T  T  G  L  F  T  E  P  *  L  L  N  L  S  R  R  F  F  S  S  T  L  A  W  L  L  L  S  A  T  R  S  N  L  V  P  A  M  A  L  D  L  L  V  L  H  G  L  L  V  A  *  F  L  F  S  C  I  P  L  L  G  F  L  :  V  G  I  *  T  R  Q  *  R  L  G  Y  Y  *  Q  G  R  C  H  Y  *  E  R  W  R  I  W  W  R  S  A  *  E  P  F  A  A  L  V  *  *  K  V  *  *  R  M  I  I  R  S  M  V  A  V  L  I  P  S  Q  L  A  T  Q  R  A  Q  H  *  V  L  R  L  L  L  L  S  F  S  C  I  P  Y  F  P  P  P  T  P  K  G  K  H  V  I  H  T  S  Q :   F  *  H  H  C  Q  L  D  S  Q  C  L  W  C  T  W  P  P  F  P  S  L  A  L  A  S  I  L  L  G  V  S  E  L  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73239" stop="72987"/>
                    <exon start="72917" stop="72622"/>
                    <exon start="71576" stop="71466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMVKDYVDPPSAPLFQTAELYNWSFYRALIAEFVATLLFLYVSVATVIGHKKQLGPCDGVGLVGIAWAFGGMIFVLVYSTAGISGGHINPAVTFGLLLARKVSLLRAVAYMVAQCLGAICGVGLVKGVMKDDYTKHGGGANTVAVGYSTGAALGAEIIATFLLMYTVFSATDAKRKARDSHVPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="80234" PGL_stop="81212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80234" e_stop="80785"/>
            <exon e_start="80915" e_stop="80992"/>
            <exon e_start="81096" e_stop="81212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="80234" e_stop="80785" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80786" i_stop="80914" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80915" e_stop="80992" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80993" i_stop="81095" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81096" e_stop="81212" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80234" stop="80785"/>
              <exon start="80915" stop="80992"/>
              <exon start="81096" stop="81212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGTACATTCCCCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAG : GCTTATATGAACGAGTTGGAATCAGAAGTGGCACATTTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAG : TTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAACTGCTCCATTTTGAGATCTTATTATAATTTGGTTTCCTAGTGCTACATTAGTATTAAGA</gDNA_template>
            <first_frame> K  S  T  F  P  S  L  F  F  S  F  F  K  N  P  I  M  W  S  S  S  S  D  N  R  G  L  S  A  S  S  S  S  S  S  S  S  S  H  S  P  F  S  P  R  L  K  T  M  E  E  V  W  K  D  I  N  L  S  S  L  Q  D  H  T  T  N  Y  S  R  D  H  H  H  L  H  D  H  N  H  Q  A  A  N  F  G  G  M  I  L  Q  D  F  L  A  R  P  F  A  N  E  S  S  P  A  A  A  A  A  A  A  S  P  V  S  A  T  T  M  L  N  L  N  S  V  P  E  L  H  F  F  D  N  P  L  R  Q  N  S  I  L  H  Q  P  N  A  S  G  R  K  R  V  V  P  E  T  E  D  N  S  T  G  D  R  R  N  Q  R  M  I  K  N  R  E  S  A  A  R  S  R  A  R  K  Q  :  A  Y  M  N  E  L  E  S  E  V  A  H  L  V  E  E  N  A  R  L  K  K  Q  Q  Q  Q  :  L  R  V  D  A  A  N  Q  V  P  K  K  N  T  L  Y  R  T  S  T  A  P  F  *  D  L  I  I  I  W  F  P  S  A  T  L  V  L  R </first_frame>
            <second_frame>  R  V  H  S  P  H  Y  F  F  L  F  S  R  I  Q  L  C  G  H  Q  A  V  I  T  G  D  S  L  L  L  L  L  H  L  H  P  H  L  I  H  H  F  L  Q  D  S  K  Q  W  K  K  C  G  K  I  L  I  F  L  H  F  K  I  T  L  R  I  T  L  E  I  I  I  I  F  M  I  I  I  I  K  L  L  I  L  V  E  *  F  Y  K  I  F  W  Q  G  L  L  L  M  N  L  H  Q  Q  Q  Q  Q  Q  Q  P  P  L  F  Q  L  Q  L  C  *  I  *  T  L  F  L  S  F  I  S  L  I  T  H  *  G  K  T  Q  S  C  T  N  Q  M  Q  V  E  E  K  G  L  S  L  K  Q  K  T  I  L  Q  G  I  E  E  I  R  G  *  S  R  T  E  S  L  L  L  D  Q  E  L  E  S  R :   L  I  *  T  S  W  N  Q  K  W  H  I  *  L  K  K  M  Q  G  S  R  S  S  S  N  S :   Y  E  *  M  Q  L  I  K  F  P  K  R  T  L  F  I  G  R  Q  L  L  H  F  E  I  L  L  *  F  G  F  L  V  L  H  *  Y  *   </second_frame>
            <third_frame>   E  Y  I  P  L  T  I  F  F  F  F  Q  E  S  N  Y  V  V  I  K  Q  *  *  Q  G  T  L  C  F  F  F  F  I  F  I  L  I  S  F  T  I  F  S  K  T  Q  N  N  G  R  S  V  E  R  Y  *  S  F  F  T  S  R  S  H  Y  E  L  L  *  R  S  S  S  S  S  *  S  *  S  S  S  C  *  F  W  W  N  D  F  T  R  F  F  G  K  A  F  C  *  *  I  F  T  S  S  S  S  S  S  S  L  P  C  F  S  Y  N  Y  A  E  F  E  L  C  S  *  A  S  F  L  *  *  P  I  E  A  K  L  N  L  A  P  T  K  C  K  W  K  K  K  G  C  P  *  N  R  R  Q  F  Y  R  G  *  K  K  S  E  D  D  Q  E  Q  R  V  C  C  *  I  K  S  *  K  A   : G  L  Y  E  R  V  G  I  R  S  G  T  F  S  *  R  K  C  K  A  Q  E  A  A  A  T   : V  T  S  R  C  S  *  S  S  S  Q  K  E  H  S  L  S  D  V  N  C  S  I  L  R  S  Y  Y  N  L  V  S  *  C  Y  I  S  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80234" stop="80785"/>
                    <exon start="80915" stop="80992"/>
                    <exon start="81096" stop="81167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSTFPSLFFSFFKNPIMWSSSSDNRGLSASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLHDHNHQAANFGGMILQDFLARPFANESSPAAAAAAASPVSATTMLNLNSVPELHFFDNPLRQNSILHQPNASGRKRVVPETEDNSTGDRRNQRMIKNRESAARSRARKQAYMNELESEVAHLVEENARLKKQQQQLRVDAANQVPKKNTLYRTSTAPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="95898" PGL_stop="90081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95898" e_stop="95844"/>
            <exon e_start="95491" e_stop="95406"/>
            <exon e_start="95239" e_stop="94450"/>
            <exon e_start="92567" e_stop="92155"/>
            <exon e_start="92021" e_stop="91912"/>
            <exon e_start="91722" e_stop="91651"/>
            <exon e_start="90962" e_stop="90856"/>
            <exon e_start="90754" e_stop="90661"/>
            <exon e_start="90464" e_stop="90360"/>
            <exon e_start="90271" e_stop="90081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.454" acc_prob="0.999" e_score="0.927"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="95898" e_stop="95844" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.454" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95491" e_stop="95406" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95239" e_stop="94450" e_length="790"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92567" e_stop="92155" e_length="413"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.686">
            <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92021" e_stop="91912" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.590">
            <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91722" e_stop="91651" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.938" acc_prob="0.565">
            <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90962" e_stop="90856" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90754" e_stop="90661" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90360" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="90271" e_stop="90081" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95898" stop="95844"/>
              <exon start="95491" stop="95406"/>
              <exon start="95239" stop="94450"/>
              <exon start="92567" stop="92155"/>
              <exon start="92021" stop="91912"/>
              <exon start="91722" stop="91651"/>
              <exon start="90962" stop="90856"/>
              <exon start="90754" stop="90661"/>
              <exon start="90464" stop="90360"/>
              <exon start="90271" stop="90081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTAAACAGTGTAGATAACGGAGCTCCCAGACAACAGACACCGAAGAGAAAC : GTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG : CTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATCTGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCTACAGCTCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCTAATTGGAAATTTATTGGAGCAGCTCAAGATTACTGAACTTAAGAGGTATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG : GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG : AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT : GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT : CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG : GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG : GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG : GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCC</gDNA_template>
            <first_frame> L  C  K  Q  C  R  *  R  S  S  Q  T  T  D  T  E  E  K   : R  L  A  *  L  E  R  N  A  E  R  T  A  G  L  R  W  S  T  V  R  L  T  A  S  P  L  I  Q  :  L  K  Y  R  *  L  H  F  Y  F  N  G  I  C  W  K  Q  F  F  G  V  H  S  G  Y  I  *  C  F  *  V  Y  F  D  G  T  A  C  L  R  H  *  L  E  L  E  S  D  E  *  C  I  M  E  V  L  *  K  S  I  L  S  R  Q  C  C  F  L  R  V  L  P  N  E  F  N  L  L  D  *  K  S  W  W  R  Q  L  D  F  F  V  K  S  L  E  R  V  A  V  F  I  L  A  L  L  L  I  C  A  C  Y  *  I  E  I  *  R  E  F  R  V  N  N  L  G  F  T  Y  G  V  I  G  P  F  W  G  Y  C  K  Y  C  T  A  Y  W  N  R  C  G  E  A  N  W  D  D  C  E  S  C  C  Y  S  S  D  A  Q  E  E  L  Q  A  V  C  T  A  S  Q  A  N  W  K  F  I  G  A  A  Q  D  Y  *  T  *  E  V  S  G  N  P  R  A  I  G  T  S  *  R  C  I  E  E  V  L  F  I  G  Q  Q  L  S  G  Q  E  L  P  L  S  V  G  Y  G  V  E  H  C  I  P  V  S  *  G  S  E  R  D  *  P  I  L  E  D  Y  S  S  Y  H  S  G  *  *  C  S  S  Q   : G  K  V  G  I  Y  *  N  G  P  A  *  I  H  T  G  G  *  R  H  E  G  A  R  S  D  Y  E  T  R  A  F  *  R  *  Y  N  N  I  N  E  E  S  F  L  F  L  P  K  S  A  Y  Q  *  G  N  S  K  R  K  *  E  T  P  T  R  T  T  A  L  A  S  *  F  R  C  R  S  V  *  I  H  S  A  S  S  G  C  H  R  S  S  C  Q  *  L  S  I  I  E  E  F  T  C  Q  T  S  Q  K  V  G  S  E  L  L  E  C  *  Y  *  E  G  I  L  *  R  L  C  *  K  *  *  E  T  D  N  F  K  :  K  H  F  I  S  Y  I  K  T  *  P  A  F  L  K  G  F  T  S  I  *  R  V  A  F  R  S  A  G  L  L  F  R  T  S  L  M :   Y  *  N  P  F  L  S  L  W  Y  I  F  *  N  C  Q  C  C  C  G  Q  A  Y  I :   F  S  G  C  L  *  *  I  N  G  L  F  L  D  T  V  L  L  L  L  H  M  L  H  Q  K  E  A  S  E  K  A  K  H  Q   : G  R  L  C  *  *  F  S  F  S  F  D  V  L  L  L  C  S  C  P  R  I  A  R  S  Q  D  T  W  D  T  W :   Y  R  E  D  E  N  K  P  S  N  H  S  I  H  G  I  L  G  S  *  T  W  L  F  *  H  K  I  S  E  S  T  I  W  R :   F  G  V  Y  N  *  P  R  V  V  H  S  F  T  W  L  L  V  T  I  H  V  C  D  V  R  I  C  S  M  W  C  T  C  R  N  I  M  V  *  L  W  M  N  I  M  T  Y  F  L  *  K  *  K  I  T  T  T  R  L  L  Q  F  </first_frame>
            <second_frame>  F  V  N  S  V  D  N  G  A  P  R  Q  Q  T  P  K  R  N  :  V  *  L  S  L  K  G  M  L  K  G  L  R  D  C  G  G  V  Q  *  G  *  R  R  H  R  *  F  S :   *  N  T  D  S  C  T  S  I  S  T  G  S  V  G  S  N  S  L  G  C  I  L  V  T  Y  D  A  F  E  C  I  L  M  V  L  H  V  C  D  I  D  W  N  L  N  L  M  N  D  A  L  W  K  F  Y  R  S  L  Y  *  V  G  N  V  V  F  S  E  F  Y  L  M  N  S  T  C  L  I  K  R  A  G  G  D  S  L  I  F  L  L  K  V  *  S  E  L  L  F  L  Y  W  P  S  C  *  S  V  L  V  I  E  L  K  F  R  E  S  F  V  *  I  I  *  D  L  L  M  A  S  L  D  H  F  G  D  I  A  N  I  A  Q  L  T  G  I  D  A  V  R  L  I  G  M  I  V  K  A  A  A  T  A  R  M  H  K  K  N  C  R  Q  F  A  Q  H  L  K  L  I  G  N  L  L  E  Q  L  K  I  T  E  L  K  R  Y  P  E  T  R  E  P  L  E  H  L  E  D  A  L  R  R  S  Y  L  L  V  N  S  C  Q  D  R  S  Y  L  Y  L  L  A  M  G  W  N  I  V  Y  Q  F  R  R  A  Q  N  E  I  D  Q  Y  L  K  I  I  P  L  I  T  L  V  D  N  A  R  V  R  :  E  R  L  E  Y  I  E  M  D  Q  R  E  Y  T  L  E  V  E  D  M  K  V  Q  E  V  I  M  K  P  E  P  S  K  D  D  T  I  I  L  T  K  N  L  S  C  S  Y  P  R  V  P  I  N  E  A  I  Q  K  E  N  E  K  L  Q  L  E  L  Q  R  S  Q  A  N  L  D  V  G  Q  C  E  F  I  Q  H  L  L  D  V  T  E  V  V  A  N  N  S  L  S  L  K  S  S  P  A  K  P  L  K  K  L  D  Q  S  Y  S  N  V  D  T  E  K  V  Y  Y  D  D  Y  A  K  S  D  E  K  Q  T  T  S  R :   N  T  S  S  V  T  S  R  H  D  L  L  S  S  K  G  S  H  Q  Y  E  E  W  H  S  D  L  L  G  C  C  S  E  P  L  L   : C  I  K  T  L  F  F  P  C  G  T  F  S  R  I  A  S  V  A  A  D  R  H  I   : S  S  A  D  A  C  N  E  L  M  A  Y  S  L  I  L  S  C  C  C  Y  T  C  C  I  R  K  K  L  R  K  K  L  N  I  K  :  G  G  C  V  D  D  F  L  S  H  L  M  C  C  C  C  A  L  V  Q  E  L  R  E  V  K  I  R  G  T  H   : G  I  E  K  T  K  I  S  P  P  T  T  Q  F  M  E  S  *  E  A  K  P  G  F  F  S  T  K  Y  Q  K  A  L  Y  G   : G  S  V  C  I  I  D  P  E  L  F  I  R  L  H  G  Y  W  *  L  Y  M  Y  V  M  *  E  S  V  L  C  G  V  H  A  G  I  L  W  C  N  Y  G  *  I  S  *  R  I  F  C  E  N  K  R  *  Q  L  L  G  C  C  S  S </second_frame>
            <third_frame>   L  *  T  V  *  I  T  E  L  P  D  N  R  H  R  R  E  T :   F  S  L  A  *  K  E  C  *  K  D  C  G  I  A  V  E  Y  S  E  V  N  G  V  T  V  N  S   : A  E  I  P  I  A  A  L  L  F  Q  R  D  L  L  E  A  I  L  W  G  A  F  W  L  H  M  M  L  L  S  V  F  *  W  Y  C  M  S  A  T  L  T  G  T  *  I  *  *  M  M  H  Y  G  S  S  I  E  V  Y  I  E  S  A  M  L  F  S  P  S  F  T  *  *  I  Q  L  A  *  L  K  E  L  V  E  T  A  *  F  F  C  *  K  F  R  A  S  C  C  F  Y  T  G  P  P  A  D  L  C  L  L  L  N  *  N  L  E  R  V  S  C  E  *  S  R  I  Y  L  W  R  H  W  T  I  L  G  I  L  Q  I  L  H  S  L  L  E  S  M  R  *  G  *  L  G  *  L  *  K  L  L  L  Q  L  G  C  T  R  R  I  A  G  S  L  H  S  I  S  S  *  L  E  I  Y  W  S  S  S  R  L  L  N  L  R  G  I  R  K  P  E  S  H  W  N  I  L  K  M  H  *  G  G  L  I  Y  W  S  T  A  V  R  T  G  A  T  F  I  C  W  L  W  G  G  T  L  Y  T  S  F  V  G  L  R  T  R  L  T  N  T  *  R  L  F  L  L  S  L  W  L  I  M  L  E  S  G :   K  G  W  N  I  L  K  W  T  S  V  N  T  H  W  R  L  K  T  *  R  C  K  K  *  L  *  N  Q  S  L  L  K  M  I  Q  *  Y  *  R  R  I  F  P  V  L  T  Q  E  C  L  S  M  R  Q  F  K  K  K  M  R  N  S  N  *  N  Y  S  A  R  K  L  I  *  M  *  V  S  V  N  S  F  S  I  F  W  M  S  Q  K  *  L  P  I  T  L  Y  H  *  R  V  H  L  P  N  L  S  K  S  W  I  R  V  T  R  M  L  I  L  R  R  Y  I  M  T  I  M  L  K  V  M  R  N  R  Q  L  Q   : E  T  L  H  Q  L  H  Q  D  M  T  C  F  P  Q  R  V  H  I  N  M  K  S  G  I  Q  I  C  W  A  A  V  Q  N  L  S  Y  :  V  L  K  P  F  S  F  L  V  V  H  F  L  E  L  P  V  L  L  R  T  G  I  Y  :  L  Q  R  M  L  V  M  N  *  W  L  I  P  *  Y  C  P  A  V  V  T  H  V  A  S  E  R  S  F  G  K  S  *  T  S  R :   E  V  V  L  M  I  F  F  L  I  *  C  A  V  A  V  L  L  S  K  N  C  A  K  S  R  Y  V  G  H  M  :  V  *  R  R  R  K  *  A  L  Q  P  L  N  S  W  N  P  R  K  L  N  L  A  F  L  A  Q  N  I  R  K  H  Y  M  E  :  V  R  C  V  *  L  T  Q  S  C  S  F  V  Y  M  V  T  G  D  Y  T  C  M  *  C  K  N  L  F  Y  V  V  Y  M  Q  E  Y  Y  G  V  T  M  D  E  Y  H  D  V  F  F  V  K  I  K  D  N  N  Y  *  V  V  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94866" stop="94450"/>
                    <exon start="92567" stop="92155"/>
                    <exon start="92021" stop="91912"/>
                    <exon start="91722" stop="91651"/>
                    <exon start="90962" stop="90856"/>
                    <exon start="90754" stop="90661"/>
                    <exon start="90464" stop="90412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLLMASLDHFGDIANIAQLTGIDAVRLIGMIVKAAATARMHKKNCRQFAQHLKLIGNLLEQLKITELKRYPETREPLEHLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRRAQNEIDQYLKIIPLITLVDNARVRERLEYIEMDQREYTLEVEDMKVQEVIMKPEPSKDDTIILTKNLSCSYPRVPINEAIQKENEKLQLELQRSQANLDVGQCEFIQHLLDVTEVVANNSLSLKSSPAKPLKKLDQSYSNVDTEKVYYDDYAKSDEKQTTSRNTSSVTSRHDLLSSKGSHQYEEWHSDLLGCCSEPLLCIKTLFFPCGTFSRIASVAADRHISSADACNELMAYSLILSCCCYTCCIRKKLRKKLNIKGGCVDDFLSHLMCCCCALVQELREVKIRGTHGIEKTKISPPTTQFMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="112809" PGL_stop="115997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112809" e_stop="113071"/>
            <exon e_start="113155" e_stop="113251"/>
            <exon e_start="113351" e_stop="113474"/>
            <exon e_start="115186" e_stop="115371"/>
            <exon e_start="115516" e_stop="115603"/>
            <exon e_start="115802" e_stop="115858"/>
            <exon e_start="115957" e_stop="115997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="0.992"/>
          <exon-intron don_prob="0.753" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.907" e_score="0.977"/>
          <exon-intron don_prob="0.267" acc_prob="0.998" e_score="0.965"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="112809" e_stop="113071" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="113072" i_stop="113154" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113155" e_stop="113251" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.753" acc_prob="0.932">
            <gDNA_intron_boundary i_start="113252" i_stop="113350" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113351" e_stop="113474" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.962">
            <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115186" e_stop="115371" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115372" i_stop="115515" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="115516" e_stop="115603" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.907">
            <gDNA_intron_boundary i_start="115604" i_stop="115801" i_length="198"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="115802" e_stop="115858" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.267" acc_prob="0.998">
            <gDNA_intron_boundary i_start="115859" i_stop="115956" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.927">
            <gDNA_exon_boundary e_start="115957" e_stop="115997" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112809" stop="113071"/>
              <exon start="113155" stop="113251"/>
              <exon start="113351" stop="113474"/>
              <exon start="115186" stop="115371"/>
              <exon start="115516" stop="115603"/>
              <exon start="115802" stop="115858"/>
              <exon start="115957" stop="115997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACTCCTGAGAGGAAGAAGGGAAAATTAGAAATCGGTCTTAACGTTTGTACAGAGTTTAGAATCAAACTTGGAATTGCACGACCACTCCAATATAGAGAAGGATCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTT : GACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTAT : ATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATT : GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGG : GGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCAG : GGACATGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTTCGCGATCTT : GTGGGGAAGAACCTGCATGTTCTAGGTCAAATTGAGGGCAT</gDNA_template>
            <first_frame> L  T  P  E  R  K  K  G  K  L  E  I  G  L  N  V  C  T  E  F  R  I  K  L  G  I  A  R  P  L  Q  Y  R  E  G  S  S  L  A  V  A  A  K  T  N  S  K  S  P  K  F  T  R  K  D  P  I  *  *  L  M  E  S  K  T  K  R  S  G  L  P  L  G  S  P  A  F  S  R  T  H  F  T  C  I  A  L  L :   T  R  T  I  *  K  M  H  *  N  T  R  L  R  C  S  R  S  S  E  L  P  S  F  L  L  T  N  T  M  N  Y  :  I  C  A  H  L  M  N  *  G  N  *  R  S  S  S  E  R  R  Q  I  V  A  A  P  L  L  S  C  M  S  S  C  S  T  L  A  T  F  C  L  D   : C  I  S  F  V  Q  W  V  Q  C  T  L  N  Q  R  R  L  L  P  R  I  F  S  K  I  W  W  K  C  A  V  A  Y  N  I  H  Y  V  V  S  S  *  G  V  T  F  H  K  S  V  G  I  N  C  L  I  *  D  L  N  M  K   : G  M  L  T  L  S  W  M  Q  *  N  S  C  S  K  I  S  Q  K  *  T  N  F  G  C  E  C  N  I  R :   D  M  H  G  K  R  K  N  V  K  K  K  G  A  S  F  A  I  L :   W  G  R  T  C  M  F  *  V  K  L  R  A  </first_frame>
            <second_frame>  *  L  L  R  G  R  R  E  N  *  K  S  V  L  T  F  V  Q  S  L  E  S  N  L  E  L  H  D  H  S  N  I  E  K  D  P  H  *  Q  L  Q  Q  K  R  T  P  N  L  P  N  L  P  G  K  I  Q  Y  D  N  *  W  S  R  R  R  R  E  V  A  C  R  W  D  R  R  P  S  A  E  R  I  L  H  A  S  R  S   : *  L  E  Q  S  E  R  C  I  E  I  L  G  S  D  A  L  G  A  P  N  F  Q  A  F  S  S  Q  I  L  *  T  I :   Y  A  R  I  *  *  I  E  E  I  R  D  L  L  Q  R  G  D  K  S  W  L  L  H  C  *  V  V  *  A  R  A  A  R  W  Q  H  F  A  *  I  :  V  S  P  L  Y  S  G  F  S  V  H  *  I  K  G  G  S  C  Q  G  Y  S  Q  R  S  G  G  N  V  P  *  H  T  T  S  I  T  W  S  L  P  K  E  L  P  F  T  S  Q  *  G  *  I  A  *  Y  R  I  *  I  *  R  :  G  C  *  H  C  H  G  C  S  R  I  R  A  P  K  F  H  R  N  E  Q  T  L  G  A  N  A  T  S   : G  T  C  T  G  K  G  K  T  *  K  R  K  E  R  A  S  R  S   : C  G  E  E  P  A  C  S  R  S  N  *  G  H </second_frame>
            <third_frame>   D  S  *  E  E  E  G  K  I  R  N  R  S  *  R  L  Y  R  V  *  N  Q  T  W  N  C  T  T  T  P  I  *  R  R  I  L  T  S  S  C  S  K  N  E  L  Q  I  S  Q  I  Y  Q  E  R  S  N  M  I  T  N  G  V  E  D  E  E  K  W  L  A  A  G  I  A  G  L  Q  Q  N  A  F  Y  M  H  R  A  L  :  D  S  N  N  L  K  D  A  L  K  Y  S  A  Q  M  L  S  E  L  R  T  S  K  L  S  P  H  K  Y  Y  E  L   : Y  M  R  A  F  D  E  L  R  K  L  E  I  F  F  R  E  E  T  N  R  G  C  S  I  V  E  L  Y  E  L  V  Q  H  A  G  N  I  L  P  R  L :   Y  L  L  C  T  V  G  S  V  Y  I  K  S  K  E  A  P  A  K  D  I  L  K  D  L  V  E  M  C  R  S  I  Q  H  P  L  R  G  L  F  L  R  S  Y  L  S  Q  V  S  R  D  K  L  P  D  I  G  S  E  Y  E  G :   D  A  D  T  V  M  D  A  V  E  F  V  L  Q  N  F  T  E  M  N  K  L  W  V  R  M  Q  H  Q  :  G  H  A  R  E  K  E  K  R  E  K  E  R  S  E  L  R  D  L  :  V  G  K  N  L  H  V  L  G  Q  I  E  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112907" stop="113071"/>
                    <exon start="113155" stop="113251"/>
                    <exon start="113351" stop="113474"/>
                    <exon start="115186" stop="115371"/>
                    <exon start="115516" stop="115603"/>
                    <exon start="115802" stop="115858"/>
                    <exon start="115957" stop="115995"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRILTSSCSKNELQISQIYQERSNMITNGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEIFFREETNRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILKDLVEMCRSIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVLQNFTEMNKLWVRMQHQGHAREKEKREKERSELRDLVGKNLHVLGQIEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112914" e_stop="113071"/>
            <exon e_start="113155" e_stop="113474"/>
            <exon e_start="115186" e_stop="115339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.962" e_score="0.994"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112914" e_stop="113071" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="113072" i_stop="113154" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="113155" e_stop="113474" e_length="320"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.962">
            <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="115186" e_stop="115339" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112914" stop="113071"/>
              <exon start="113155" stop="113474"/>
              <exon start="115186" stop="115339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCACTAGCAGTTGCAGCAAAAACGAACTCCAAATCTCCCAAATTTACCAGGAAAGATCCAATATGATAACTAATGGAGTCGAAGACGAAGAGAAGTGGCTTGCCGCTGGGATCGCCGGCCTTCAGCAGAACGCATTTTACATGCATCGCGCTCTT : GACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATT : GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGAT</gDNA_template>
            <first_frame> S  S  L  A  V  A  A  K  T  N  S  K  S  P  K  F  T  R  K  D  P  I  *  *  L  M  E  S  K  T  K  R  S  G  L  P  L  G  S  P  A  F  S  R  T  H  F  T  C  I  A  L  L :   T  R  T  I  *  K  M  H  *  N  T  R  L  R  C  S  R  S  S  E  L  P  S  F  L  L  T  N  T  M  N  Y  V  S  G  F  H  *  S  D  L  L  V  L  Y  K  L  E  L  G  D  P  L  T  A  V  L  E  L  C  S  L  I  C  *  I  C  A  H  L  M  N  *  G  N  *  R  S  S  S  E  R  R  Q  I  V  A  A  P  L  L  S  C  M  S  S  C  S  T  L  A  T  F  C  L  D   : C  I  S  F  V  Q  W  V  Q  C  T  L  N  Q  R  R  L  L  P  R  I  F  S  K  I  W  W  K  C  A  V  A  Y  N  I  H  Y  V  V  S  S  *  G  V  T  F  H  K  S  V  G   </first_frame>
            <second_frame>  P  H  *  Q  L  Q  Q  K  R  T  P  N  L  P  N  L  P  G  K  I  Q  Y  D  N  *  W  S  R  R  R  R  E  V  A  C  R  W  D  R  R  P  S  A  E  R  I  L  H  A  S  R  S   : *  L  E  Q  S  E  R  C  I  E  I  L  G  S  D  A  L  G  A  P  N  F  Q  A  F  S  S  Q  I  L  *  T  M  *  V  V  F  T  D  R  I  C  S  Y  F  I  S  W  N  S  E  I  L  *  L  Q  Y  W  N  C  A  L  *  F  V  R  Y  A  R  I  *  *  I  E  E  I  R  D  L  L  Q  R  G  D  K  S  W  L  L  H  C  *  V  V  *  A  R  A  A  R  W  Q  H  F  A  *  I  :  V  S  P  L  Y  S  G  F  S  V  H  *  I  K  G  G  S  C  Q  G  Y  S  Q  R  S  G  G  N  V  P  *  H  T  T  S  I  T  W  S  L  P  K  E  L  P  F  T  S  Q  *  G  </second_frame>
            <third_frame>   L  T  S  S  C  S  K  N  E  L  Q  I  S  Q  I  Y  Q  E  R  S  N  M  I  T  N  G  V  E  D  E  E  K  W  L  A  A  G  I  A  G  L  Q  Q  N  A  F  Y  M  H  R  A  L  :  D  S  N  N  L  K  D  A  L  K  Y  S  A  Q  M  L  S  E  L  R  T  S  K  L  S  P  H  K  Y  Y  E  L  C  K  W  F  S  L  I  G  S  A  R  T  L  *  V  G  T  R  R  S  F  N  C  S  I  G  I  V  L  F  D  L  L  D  M  R  A  F  D  E  L  R  K  L  E  I  F  F  R  E  E  T  N  R  G  C  S  I  V  E  L  Y  E  L  V  Q  H  A  G  N  I  L  P  R  L :   Y  L  L  C  T  V  G  S  V  Y  I  K  S  K  E  A  P  A  K  D  I  L  K  D  L  V  E  M  C  R  S  I  Q  H  P  L  R  G  L  F  L  R  S  Y  L  S  Q  V  S  R  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113293" stop="113474"/>
                    <exon start="115186" stop="115339"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGTRRSFNCSIGIVLFDLLDMRAFDELRKLEIFFREETNRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILKDLVEMCRSIQHPLRGLFLRSYLSQVSRD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112916" stop="113071"/>
                    <exon start="113155" stop="113292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSSCSKNELQISQIYQERSNMITNGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKYYELCKWFSLIGSARTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="117101" PGL_stop="122134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117101" e_stop="117129"/>
            <exon e_start="117206" e_stop="117265"/>
            <exon e_start="117920" e_stop="118036"/>
            <exon e_start="118305" e_stop="118544"/>
            <exon e_start="118628" e_stop="118693"/>
            <exon e_start="118814" e_stop="118903"/>
            <exon e_start="119810" e_stop="119899"/>
            <exon e_start="120171" e_stop="120260"/>
            <exon e_start="120532" e_stop="120600"/>
            <exon e_start="120680" e_stop="120760"/>
            <exon e_start="120869" e_stop="120976"/>
            <exon e_start="121066" e_stop="121169"/>
            <exon e_start="121306" e_stop="121419"/>
            <exon e_start="121511" e_stop="122134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117101" e_stop="117129" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.989">
            <gDNA_intron_boundary i_start="117130" i_stop="117205" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117206" e_stop="117265" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="117266" i_stop="117919" i_length="654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117920" e_stop="118036" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.973">
            <gDNA_intron_boundary i_start="118037" i_stop="118304" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118305" e_stop="118544" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.914" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118545" i_stop="118627" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118628" e_stop="118693" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.651" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118694" i_stop="118813" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118814" e_stop="118903" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118904" i_stop="119809" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119810" e_stop="119899" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="120171" e_stop="120260" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.738">
            <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120532" e_stop="120600" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="120680" e_stop="120760" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="120869" e_stop="120976" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="121066" e_stop="121169" e_length="104"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="121306" e_stop="121419" e_length="114"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="121511" e_stop="122134" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117101" stop="117129"/>
              <exon start="117206" stop="117265"/>
              <exon start="117920" stop="118036"/>
              <exon start="118305" stop="118544"/>
              <exon start="118628" stop="118693"/>
              <exon start="118814" stop="118903"/>
              <exon start="119810" stop="119899"/>
              <exon start="120171" stop="120260"/>
              <exon start="120532" stop="120600"/>
              <exon start="120680" stop="120760"/>
              <exon start="120869" stop="120976"/>
              <exon start="121066" stop="121169"/>
              <exon start="121306" stop="121419"/>
              <exon start="121511" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121322" stop="121419"/>
              <exon start="121511" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565495" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGAACTATGCTGCTTTAAGTGCAGAA : GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG : GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG : GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG : GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG : CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG : ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG : TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG : ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG : GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG : GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG : TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG : GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA : GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</gDNA_template>
            <first_frame> F  R  T  M  L  L  *  V  Q  K :   F  Y  L  S  S  S  R  L  K  L  S  Q  N  L  I  V  P  *  A  R :   *  *  R  L  K  K  T  C  L  L  P  E  W  *  H  C  I  H  P  F  *  H  F  L  F  M  S  T  L  I  A  L  I  M  *  I  R  F  W :   V  H  V  Y  R  N  F  L  E  K  E  S  S  K  T  T  K  Q  Q  N  R  *  W  P  Y  *  V  L  L  W  R  S  I  R  I  *  I  L  R  *  S  C  Q  I  I  L  V  L  W  R  I  L  T  I  Q  L  V  K  R  W  L  M  F  *  Y  K  I  F  *  K  I  R  L  A  F  Q  L  L  K  R :   L  R  H  F  L  S  *  *  K  H  *  F  E  I  W  M  R  V  L  M  M  S :   L  M  K  M  I  S  R  K  S  R  I  L  L  R  S  L  F  K  C  F  T  M  M  I  L  K  R  C  *  R :   L  F  V  L  *  R  S  T  F  *  Q  E  G  Q  R  D  F  L  L  L  S  L  P  L  F  S  T  H  *  S :   L  L  G  D  Y  I  V  M  M  K  M  F  L  R  K  S  H  L  L  C  L  R  N  S  F  R  F  *  I  R :   L  L  R  R  S  Q  L  F  L  Y  L  N  *  H  *  S  C  T  W  S  V  L  R :   L  P  M  T  L  T  *  S  L  L  P  M  N  F  S  L  K  L  I  Y  Y  M  K  K  K  F  R :   T  P  K  H  R  *  L  Q  Y  T  *  *  *  E  L  F  R  E  C  T  S  L  V  L  R  T  G  T  R  *  R  T  R  L  Q  G :   T  L  Q  S  S  *  R  N  L  I  N  V  E  L  C  M  L  V  R  I  F  S  G  L  T  I  R  T  I  S  R  M  E  K   : G  F  C  F  A  *  S  G  P  *  E  L  Q  M  L  L  N  K  C  P  M  Q  P  E  A  A  V  D  L  S  C  S  L  *  K  F  *  T   : S  I  C  I  S  L  R  R  G  S  H  K  L  M  L  P  P  S  R  A  *  L  S  *  S  Q  L  K  C  K  V  K  I  Q  Q  Q  I  L  Q  Q  M  P  S  L  Q  A  P  C  D  T  S  S  S  R  R  I  K  V  V  Q  L  G  R  N  S  S  P  S  T  H  N  Q  I  A  F  L  K  G  I  T  F  L  V  S  Q  K  Q  H  I  F  L  T  K  Y  K  I  D  S  F  S  T  C  S  R  E  K  C  I  *  Q  R  T  S  R  S  S  *  K  D  A  Y  I  L  T  T  P  L  R  S  N  I  L  I  K  I  V  I  V  V  T  I  C  S  P  A  M  T  S  E  C  L  P  L  L  L  F  F  F  F  L  V  E  S  R  F  S  F  E  V  E  E  T  R  S  G  E  V  V  H  *  F  V  V  Q  K  C  D  Y  D  E  Y  *  N  N  L  S  L  S  F  V  *  H  V  L  S  H  L  T  </first_frame>
            <second_frame>  F  E  L  C  C  F  K  C  R   : S  F  T  *  V  L  P  G  *  S  F  R  K  T  *  *  C  H  R  Q   : G  D  R  G  S  R  R  H  A  Y  C  R  S  G  D  I  V  F  I  P  F  D  I  F  S  S  C  P  P  *  S  P  *  L  C  R  S  D  S   : G  C  M  C  T  E  T  F  W  K  R  K  A  Q  R  Q  Q  S  N  K  T  D  S  G  P  T  K  C  S  S  G  E  V  *  G  Y  R  Y  C  A  K  A  V  K  L  S  S  S  Y  G  E  S  *  R  F  N  *  *  R  D  G  *  C  F  S  T  K  Y  F  E  K  *  D  L  H  F  N  C  *  K   : G  *  G  T  F  *  V  N  E  S  T  N  S  R  F  G  *  G  C  *  *  *   : A  *  *  R  *  F  P  G  R  A  E  F  C  C  A  A  Y  S  N  A  S  Q  *  *  S  *  R  D  A  E   : D  Y  L  C  C  E  E  A  H  F  D  R  R  A  K  E  T  S  F  Y  C  P  S  P  Y  F  Q  L  T  K   : V  C  *  A  T  T  *  S  *  *  K  C  S  *  G  R  V  I  C  Y  A  *  E  I  L  S  D  S  E  S   : D  Y  *  G  A  L  N  C  S  C  T  *  T  S  T  E  A  V  P  G  V  C  *   : G  C  Q  *  L  *  H  R  A  C  C  L  *  I  F  H  S  S  L  Y  T  I  *  R  R  N  F   : G  L  Q  S  T  G  D  C  N  T  L  D  N  R  N  S  S  E  N  A  H  L  W  C  *  E  Q  G  H  V  N  A  Q  G  Y  R   : V  L  C  K  A  L  E  E  T  *  S  M  *  S  C  V  C  L  F  A  S  F  L  G  *  R  S  G  Q  Y  Q  G  W  R  K  :  G  F  A  L  L  K  A  G  L  K  N  C  K  C  C  S  T  N  V  Q  C  N  P  R  Q  Q  W  I  C  L  A  L  Y  R  N  S  K  Q  :  V  S  V  F  L  *  E  G  G  L  T  N  *  C  C  L  R  P  E  P  D  *  A  N  H  N  *  N  A  K  *  K  Y  N  S  R  S  C  S  R  C  L  L  C  K  H  L  A  I  H  P  V  P  E  G  *  R  W  C  S  W  G  E  I  R  V  H  Q  L  I  I  K  *  H  F  S  K  E  L  R  S  W  C  H  R  S  S  T  F  F  L  Q  S  T  K  L  I  P  F  Q  L  A  L  E  K  N  A  F  D  N  G  L  A  E  A  A  E  K  M  H  I  Y  *  P  H  P  Y  A  V  I  S  *  *  R  L  L  L  L  *  Q  F  A  L  Q  L  *  L  P  S  A  C  H  C  Y  F  F  F  F  F  W  W  R  V  G  F  L  L  R  W  K  R  Q  G  V  E  K  *  F  I  N  L  *  F  R  N  V  I  M  T  S  T  R  I  I  C  P  S  V  L  Y  N  M  F  C  P  I  *  H </second_frame>
            <third_frame>   S  N  Y  A  A  L  S  A  E  :  V  L  P  E  F  F  Q  V  E  A  F  A  K  L  N  S  A  I  G  K  :  V  I  E  A  Q  E  D  M  P  I  A  G  V  V  T  L  Y  S  S  L  L  T  F  S  L  H  V  H  P  D  R  L  D  Y  V  D  Q  I  L  :  G  A  C  V  Q  K  L  S  G  K  G  K  L  K  D  N  K  A  T  K  Q  I  V  A  L  L  S  A  P  L  E  K  Y  K  D  I  D  T  A  L  K  L  S  N  Y  P  R  L  M  E  N  L  D  D  S  T  S  K  E  M  A  N  V  L  V  Q  N  I  L  K  N  K  T  C  I  S  T  A  E  K  :  V  E  A  L  F  E  L  M  K  A  L  I  R  D  L  D  E  G  V  D  D  E  :  L  D  E  D  D  F  Q  E  E  Q  N  S  V  A  Q  L  I  Q  M  L  H  N  D  D  P  E  E  M  L  K  :  I  I  C  A  V  K  K  H  I  L  T  G  G  P  K  R  L  P  F  T  V  P  P  L  I  F  N  S  L  K  :  F  V  R  R  L  H  S  H  D  E  N  V  P  E  E  E  S  S  A  M  P  K  K  F  F  Q  I  L  N  Q  :  I  I  E  A  L  S  I  V  P  V  P  E  L  A  L  K  L  Y  L  E  C  A  E  :  A  A  N  D  S  D  I  E  P  V  A  Y  E  F  F  T  Q  A  Y  I  L  Y  E  E  E  I  S  :  D  S  K  A  Q  V  T  A  I  H  L  I  I  G  T  L  Q  R  M  H  I  F  G  V  E  N  R  D  T  L  T  H  K  A  T  G  :  Y  S  A  K  L  L  K  K  P  D  Q  C  R  A  V  Y  A  C  S  H  L  F  W  V  D  D  Q  D  N  I  K  D  G  E  R :   V  L  L  C  L  K  R  A  L  R  I  A  N  A  A  Q  Q  M  S  N  A  T  R  G  S  S  G  S  V  L  L  F  I  E  I  L  N  K :   Y  L  Y  F  F  E  K  G  V  S  Q  I  N  V  A  S  V  Q  S  L  I  E  L  I  T  T  E  M  Q  S  E  N  T  T  A  D  P  A  A  D  A  F  F  A  S  T  L  R  Y  I  Q  F  Q  K  D  K  G  G  A  V  G  E  K  F  E  S  I  N  S  *  S  N  S  I  S  Q  R  N  Y  V  L  G  V  T  E  A  A  H  F  S  Y  K  V  Q  N  *  F  L  F  N  L  L  *  R  K  M  H  L  T  T  D  *  Q  K  Q  L  K  R  C  I  Y  T  D  H  T  P  T  Q  *  Y  P  N  K  D  C  Y  C  C  N  N  L  L  S  S  Y  D  F  R  V  P  A  T  V  T  F  F  F  F  F  G  G  E  *  V  F  F  *  G  G  R  D  K  E  W  R  S  S  S  L  I  C  S  S  E  M  *  L  *  R  V  L  E  *  F  V  P  Q  F  C  I  T  C  S  V  P  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117103" stop="117129"/>
                    <exon start="117206" stop="117265"/>
                    <exon start="117920" stop="118036"/>
                    <exon start="118305" stop="118544"/>
                    <exon start="118628" stop="118693"/>
                    <exon start="118814" stop="118903"/>
                    <exon start="119810" stop="119899"/>
                    <exon start="120171" stop="120260"/>
                    <exon start="120532" stop="120600"/>
                    <exon start="120680" stop="120760"/>
                    <exon start="120869" stop="120976"/>
                    <exon start="121066" stop="121169"/>
                    <exon start="121306" stop="121419"/>
                    <exon start="121511" stop="121721"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNYAALSAEVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFSLHVHPDRLDYVDQILGACVQKLSGKGKLKDNKATKQIVALLSAPLEKYKDIDTALKLSNYPRLMENLDDSTSKEMANVLVQNILKNKTCISTAEKVEALFELMKALIRDLDEGVDDELDEDDFQEEQNSVAQLIQMLHNDDPEEMLKIICAVKKHILTGGPKRLPFTVPPLIFNSLKFVRRLHSHDENVPEEESSAMPKKFFQILNQIIEALSIVPVPELALKLYLECAEAANDSDIEPVAYEFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILNKYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAADAFFASTLRYIQFQKDKGGAVGEKFESINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="123552" PGL_stop="122343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123552" e_stop="123436"/>
            <exon e_start="123350" e_stop="123223"/>
            <exon e_start="123153" e_stop="123049"/>
            <exon e_start="122804" e_stop="122343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="123552" e_stop="123436" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123350" e_stop="123223" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123153" e_stop="123049" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122804" e_stop="122343" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123552" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123515" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</gDNA_template>
            <first_frame> P  T  S  F  L  S  F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E  L  F  S  T  *  *  C  I  *  S  F  P  S  S  H  M  Y  M  I  E  F  G  S  R  I  L  S  R  E  F  L  L  I  V  V  K  L  H  C  F  F  F  L  L  *  I  I  S  C  *   </first_frame>
            <second_frame>  Q  H  L  F  S  P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  C  S  Q  L  D  D  A  Y  N  P  F  L  Q  V  I  C  T  *  L  S  L  E  V  G  F  S  L  E  N  S  F  L  *  L  L  N  Y  T  V  S  S  F  C  F  K  *  F  L  V  D  </second_frame>
            <third_frame>   N  I  F  S  L  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I  V  L  N  L  M  M  H  I  I  L  S  F  K  S  Y  V  H  D  *  V  W  K  *  D  S  L  S  R  I  P  S  Y  S  C  *  T  T  L  F  L  L  S  A  L  N  N  F  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123550" stop="123436"/>
                    <exon start="123350" stop="123223"/>
                    <exon start="123153" stop="123049"/>
                    <exon start="122804" stop="122661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFSLLLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123536" e_stop="122788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="123536" e_stop="122788" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123536" stop="122788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATG</gDNA_template>
            <first_frame> P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R  Y  T  P  I  L  Q  L  V  I  F  P  N  L  K  *  K  I  V  L  K  I  C  Y  T  N  I  F  Q  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R  Y  V  F  N  *  S  L  S  T  K  G  L  L  I  L  S  F  H  I  Y  I  D  R  W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R  C  Y  C  F  L  A  L  P  F  P  Q  *  F  T  I  S  *  I  K  R  D  T  H  *  L  V  F  G  C  W  L  T  *  K  *  N  P  S  R  I  K  D  N  C  N  *  M  F  I  Y  K  R  N  *  L  P  E  N  K  T  S  N  L  Q  K  Q  Y  S  I  N  F  Y  N  L  L  L  V  L  W  M  K  V  L  L  S  I   </first_frame>
            <second_frame>  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A  G  T  H  Q  Y  Y  N  *  *  F  S  Q  I  *  S  R  R  *  F  *  R  F  V  I  L  I  F  F  R  S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q  G  M  F  S  I  D  H  S  P  Q  R  D  C  *  Y  *  V  F  I  Y  I  L  T  G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q  G  A  T  A  F  *  L  F  L  F  L  N  D  L  L  F  H  K  S  K  G  I  H  I  S  *  C  L  V  A  G  *  H  K  N  K  I  Q  V  A  *  R  I  T  V  I  K  C  S  Y  I  N  G  T  S  Y  L  K  I  R  P  V  T  C  K  N  N  I  V  *  T  S  T  I  C  C  W  F  C  G  *  R  F  C  C  P  Y  </second_frame>
            <third_frame>   F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  V  H  T  N  I  T  T  S  N  F  P  K  F  K  V  E  D  S  F  E  D  L  L  Y  *  Y  F  S  G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  V  C  F  Q  L  I  T  L  H  K  G  T  A  D  I  K  F  S  Y  I  Y  *  Q  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  V  L  L  L  S  S  S  S  F  S  S  M  I  Y  Y  F  I  N  Q  K  G  Y  T  L  V  S  V  W  L  L  A  N  I  K  I  K  S  K  S  H  K  G  *  L  *  L  N  V  H  I  *  T  E  L  V  T  *  K  *  D  Q  *  L  A  K  T  I  *  Y  K  L  L  Q  F  A  V  G  F  V  D  E  G  F  A  V  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123156" stop="122920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLLSSSSFSSMIYYFINQKGYTLVSVWLLANIKIKSKSHKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123360" stop="123157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFSGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVCFQLITLHKGTADIKFSYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="123536" e_stop="123436"/>
            <exon e_start="123350" e_stop="123223"/>
            <exon e_start="123153" e_stop="123049"/>
            <exon e_start="122773" e_stop="122422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123536" e_stop="123436" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123350" e_stop="123223" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123153" e_stop="123049" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="123048" i_stop="122774" i_length="275"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="122773" e_stop="122422" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123536" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122773" stop="122422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : ATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</gDNA_template>
            <first_frame> P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I  V  L  N  L  M  M  H  I  I  L  S  F  K  S  Y  V  H  D  *  V  W  K  *   </first_frame>
            <second_frame>  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E  L  F  S  T  *  *  C  I  *  S  F  P  S  S  H  M  Y  M  I  E  F  G  S  R  </second_frame>
            <third_frame>   F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  C  S  Q  L  D  D  A  Y  N  P  F  L  Q  V  I  C  T  *  L  S  L  E  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123535" stop="123436"/>
                    <exon start="123350" stop="123223"/>
                    <exon start="123153" stop="123049"/>
                    <exon start="122773" stop="122666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKIQIQMIHWFQKLLICARLIKPSTSQWLVVGLKSMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="128639" PGL_stop="125201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128639" e_stop="128039"/>
            <exon e_start="127275" e_stop="127188"/>
            <exon e_start="127068" e_stop="126959"/>
            <exon e_start="126877" e_stop="126814"/>
            <exon e_start="126030" e_stop="125966"/>
            <exon e_start="125862" e_stop="125797"/>
            <exon e_start="125695" e_stop="125201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128639" e_stop="128039" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127275" e_stop="127188" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127068" e_stop="126959" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126877" e_stop="126814" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126030" e_stop="125966" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125862" e_stop="125797" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="125695" e_stop="125201" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128639" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG : GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG : GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG : TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG : ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG : GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG : AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAATATATTACTATTTTCTTTCAAGT</gDNA_template>
            <first_frame> A  L  F  P  G  *  N  K  G  L  L  I  I  L  T  Q  N  G  K  K  Y  R  D  E  H  P  F  I  F  I  L  S  L  S  T  S  N  F  L  F  L  D  L  G  S  L  N  F  S  S  F  S  L  Y  H  F  S  I  L  I  F  I  H  L  I  P  F  P  L  F  Y  N  S  L  *  T  F  P  F  V  E  L  G  L  G  F  H  Q  E  N  Q  R  K  H  H  W  H  V  S  I  F  F  S  A  G  F  S  S  H  S  E  E  T  T  L  K  G  I  G  E  V  K  R  N  G  N  K  K  L  Q  D  T  T  F  N  L  F  F  S  F  *  I  F  S  G  I  R  S  S  K  E  D  L  K  R  G  G  L  L  L  V  F  *  I  A  G  K  N  E  C  F  K  V  Y  Q  M  C  Y  R  R  R  W  C  R  W  K  D  V  S  L  D  F  L  H  Q  Q  Y  L  P  H   : G  L  C  A  H  R  V  R  Q  F  Q  C  K  C  G  R  Q  W  E  H  C  Q  P  R  V  V  G  Y  C  W :   T  G  G  L  Q  *  V  K  T  S  E  L  P  W  S  *  C  F  H  F  G  I  L  S  H  *  *  S  Q  L  *  K  R  C  Q  E   : V  D  S  *  I  E  A  L  C  P  R  C  S  N  S  A  C  W  N  K  T  R :   S  S  G  *  *  A  I  L  R  R  P  S  W  C  C  A  N  Y  H  C  S   : G  *  R  A  E  E  N  N  W  C  T  C  L  H  *  M  *  F  K  N  T  A   : E  R  E  S  S  L  *  C  R  Y  Q  G  R  A  P  A  T  Q  A  E  E  K  E  G  E  V  P  K  G  M  F  Y  F  V  I  N  S  R  S  N  V  I  T  G  H  T  S  P  C  N  L  S  L  V  F  L  C  H  L  S  R  R  K  *  E  V  H  V  V  C  L  I  *  N  Y  *  *  S  L  E  L  S  G  G  S  V  F  C  V  M  A  V  I  S  N  C  L  V  T  Q  H  L  C  R  R  P  L  Y  C  A  L  S  V  L  I  C  F  I  C  I  L  M  T  *  *  S  S  *  K  K  K  K  R  K  F  S  R  Q  C  *  Q  H  I  S  L  N  I  L  N  V  S  F  *  I  L  H  S  N  I  L  L  F  S  F  K  </first_frame>
            <second_frame>  H  Y  F  P  A  K  T  K  G  Y  L  *  Y  *  L  R  M  E  K  N  T  E  M  N  T  H  L  F  S  S  F  L  S  L  P  Q  T  F  S  F  *  I  W  D  P  *  I  S  P  H  F  L  F  T  I  S  L  F  S  F  S  F  T  L  F  P  F  P  S  S  T  I  L  S  E  L  S  L  S  *  N  *  G  *  G  F  T  K  R  T  K  E  N  T  I  G  M  S  R  F  S  S  L  L  G  F  Q  A  I  L  K  K  R  H  *  K  E  L  E  R  L  K  E  T  E  T  R  S  S  K  I  P  H  L  I  S  F  F  L  F  K  F  F  L  G  S  G  L  L  K  K  I  *  K  E  E  G  Y  C  W  F  S  E  *  P  G  K  M  S  A  S  R  F  I  K  C  V  T  V  G  D  G  A  V  G  K  T  C  L  L  I  S  Y  T  S  N  T  F  P  T  :  D  Y  V  P  T  V  F  D  N  F  S  A  N  V  V  V  N  G  S  T  V  N  L  G  L  W  D  T  A   : G  Q  E  D  Y  N  R  L  R  P  L  S  Y  R  G  A  D  V  F  I  L  A  F  S  L  I  S  K  A  S  Y  E  N  V  A  K  K  :  W  I  P  E  L  K  H  Y  A  P  G  V  P  I  V  L  V  G  T  K  L   : D  L  R  D  D  K  Q  F  F  V  D  H  P  G  A  V  P  I  T  T  A  Q  :  G  E  E  L  R  K  T  I  G  A  P  A  Y  I  E  C  S  S  K  T  Q  Q  :  N  V  K  A  V  F  D  A  A  I  K  V  V  L  Q  P  P  K  Q  K  K  K  K  G  K  S  Q  K  A  C  S  I  L  *  S  T  V  G  P  M  L  L  L  V  T  L  L  L  V  T  S  L  S  Y  S  F  V  I  C  L  G  G  S  R  R  S  M  L  Y  V  S  F  K  I  T  S  D  L  L  N  C  Q  V  A  R  F  S  V  *  W  L  *  S  L  I  V  *  S  H  S  T  F  V  V  G  H  S  I  V  P  S  L  F  *  F  A  L  Y  V  F  *  *  P  D  D  P  V  R  K  K  K  K  G  N  F  P  G  N  V  D  N  I  F  L  *  T  Y  *  T  F  L  F  R  Y  C  I  Q  I  Y  Y  Y  F  L  S  S </second_frame>
            <third_frame>   I  I  S  R  L  K  Q  R  V  T  Y  N  T  D  S  E  W  K  K  I  Q  R  *  T  P  I  Y  F  H  P  F  S  L  Y  L  K  L  S  L  S  R  S  G  I  P  K  F  L  L  I  F  S  L  P  F  L  Y  S  H  F  H  S  P  Y  S  L  S  P  L  L  Q  F  S  L  N  F  P  F  R  R  I  R  V  R  V  S  P  R  E  P  K  K  T  P  L  A  C  L  D  F  L  L  C  W  V  F  K  P  F  *  R  N  D  I  E  R  N  W  R  G  *  K  K  R  K  Q  E  A  P  R  Y  H  I  *  S  L  F  F  F  L  N  F  F  W  D  Q  V  F  *  R  R  S  E  K  R  R  V  I  V  G  F  L  N  S  R  E  K  *  V  L  Q  G  L  S  N  V  L  P  S  A  M  V  P  L  E  R  R  V  S  *  F  L  T  P  A  I  P  S  P  R :   I  M  C  P  P  C  S  T  I  S  V  Q  M  W  S  S  M  G  A  L  S  T  *  G  C  G  I  L  L  :  D  R  R  I  T  I  G  *  D  L  *  V  T  V  E  L  M  F  S  F  W  H  S  L  S  L  V  K  P  A  M  K  T  L  P  R  S :   G  F  L  N  *  S  I  M  P  P  V  F  Q  *  C  L  L  E  Q  N  *  :  I  F  G  M  I  S  N  S  S  *  T  I  L  V  L  C  Q  L  P  L  L  R :   V  K  S  *  G  K  Q  L  V  H  L  L  T  L  N  V  V  Q  K  H  S  R :   T  *  K  Q  S  L  M  P  L  S  R  S  C  S  S  H  P  S  R  R  K  R  R  G  S  P  K  R  H  V  L  F  C  D  Q  Q  *  V  Q  C  Y  Y  W  S  H  F  S  L  *  P  L  S  R  I  P  L  S  F  V  S  E  E  V  G  G  P  C  C  M  S  H  L  K  L  L  V  I  S  *  I  V  R  W  L  G  F  L  C  N  G  C  D  L  *  L  F  S  H  T  A  P  L  S  *  A  T  L  L  C  P  L  C  S  D  L  L  Y  M  Y  F  N  D  L  M  I  Q  L  E  K  K  K  K  E  I  F  P  A  M  L  T  T  Y  F  S  E  H  I  K  R  F  F  L  D  I  A  F  K  Y  I  T  I  F  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128146" stop="128039"/>
                    <exon start="127275" stop="127188"/>
                    <exon start="127068" stop="126959"/>
                    <exon start="126877" stop="126814"/>
                    <exon start="126030" stop="125966"/>
                    <exon start="125862" stop="125797"/>
                    <exon start="125695" stop="125594"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKSQKACSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128568" stop="128308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIYFHPFSLYLKLSLSRSGIPKFLLIFSLPFLYSHFHSPYSLSPLLQFSLNFPFRRIRVRVSPREPKKTPLACLDFLLCWVFKPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="135293" PGL_stop="130202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135293" e_stop="134901"/>
            <exon e_start="132909" e_stop="132759"/>
            <exon e_start="132669" e_stop="132502"/>
            <exon e_start="132362" e_stop="132136"/>
            <exon e_start="131681" e_stop="131558"/>
            <exon e_start="131144" e_stop="131082"/>
            <exon e_start="130921" e_stop="130778"/>
            <exon e_start="130695" e_stop="130202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135293" e_stop="134901" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132909" e_stop="132759" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.987">
            <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132669" e_stop="132502" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132362" e_stop="132136" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131681" e_stop="131558" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131144" e_stop="131082" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="130921" e_stop="130778" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="130695" e_stop="130202" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135293" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG : ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG : GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG : GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG : GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT : GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTAT</gDNA_template>
            <first_frame> *  P  P  N  Q  P  S  T  N  R  R  R  H  N  F  S  P  S  L  R  H  T  N  F  H  G  V  V  F  L  P  K  T  G  F  I  F  H  Q  F  D  P  P  T  P  P  I  Q  S  N  S  T  *  H  T  R  S  F  P  C  S  R  L  F  T  F  F  Q  V  W  A  E  V  E  S  H  H  T  I  E  G  V  G  N  F  C  H  E  G  D  G  S  L  V  Q  *  S  E  F  T  G  S  Y  S  C  *  S  G  S  G  Y  S  E  L  P  D  L  Y  W  G  W  T  S  *  S  T  *  P  P  T  K  :  T  Y  S  W  E  E  S  P  C  R  Y  *  H  Y  S  C  P  S  I  S  *  *  N  Y  K  R  F  D  R  W  K  P  *  C  Y  R  R  K  C  H  F  A  R  W  *  A  I  *  K  H   : G  N  S  Y  E  S  L  *  *  S  H  R  I  K  A  G  S  S  L  Y  I  C  R  S  R  W  W  S  Y  R  *  H  V  W  L  C  R  R  F  L  P  S  W  S  *  F  Y  S  D  P  H  H  C  Y  G  T   : G  R  F  F  C  W  R  Q  N  W  N  K  P  S  T  W  *  K  Y  D  W  S  I  L  P  A  T  M  C  A  Y  R  H  G  Y  P  E  Y  F  T  R  *  R  I  S  I  W  P  R  R  S  N  K  I  W  T  H  *  R  C  *  V  F  R  V  A  R  T  E  Y  A  I  I  I  S  K  :  G  P  H  C  I  Y  L  C  Y  Q  A  F  L  *  K  Q  S  R  C  C  F  S  R  *  E  G  K  R  S  E  G  N  F  E  L  G  S  Y  L  W  S   : C  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  *  Y  T  C  *  C  I  F  Y </first_frame>
            <second_frame>  N  H  L  T  S  H  P  Q  I  V  D  A  T  I  F  L  L  P  S  A  T  P  T  F  M  A  S  S  F  C  P  K  Q  A  L  S  F  T  N  S  T  H  Q  L  H  Q  S  R  A  I  P  R  D  I  H  V  R  F  P  A  P  V  S  S  P  S  S  R  C  G  L  K  S  K  A  T  T  R  L  K  V  L  A  T  S  A  T  K  V  M  D  H  S  S  S  K  A  S  S  Q  A  P  T  V  V  E  V  D  L  G  T  R  S  Y  P  I  Y  I  G  A  G  L  L  D  Q  P  D  L  L  Q  R :   H  I  H  G  K  R  V  L  V  V  T  N  T  T  V  A  P  L  Y  L  D  K  T  I  S  A  L  T  D  G  N  P  N  V  T  V  E  S  V  I  L  P  D  G  E  Q  F  K  N  M  :  E  T  L  M  K  V  F  D  K  A  I  E  S  R  L  D  R  R  C  T  F  V  A  L  G  G  G  V  I  G  D  M  C  G  Y  A  A  A  S  Y  L  R  G  V  N  F  I  Q  I  P  T  T  V  M  A  Q  :  V  D  S  S  V  G  G  K  T  G  I  N  H  P  L  G  K  N  M  I  G  A  F  Y  Q  P  Q  C  V  L  I  D  T  D  T  L  N  T  L  P  D  R  E  L  A  S  G  L  A  E  V  I  K  Y  G  L  I  R  D  A  E  F  F  E  W  Q  E  Q  N  M  P  L  L  L  A  R :   D  P  T  A  F  T  Y  A  I  K  R  S  C  E  N  K  A  D  V  V  S  Q  D  E  K  E  S  G  V  R  A  T  L  N  L  G  H  T  F  G  H  :  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  N  I  L  A  D  A  S  S   </second_frame>
            <third_frame>   T  T  *  P  A  I  H  K  S  S  T  P  Q  F  F  S  F  P  P  P  H  Q  L  S  W  R  R  L  S  A  Q  N  R  L  Y  L  S  P  I  R  P  T  N  S  T  N  P  E  Q  F  H  V  T  Y  T  F  V  S  L  L  P  S  L  H  L  L  P  G  V  G  *  S  R  K  P  P  H  D  *  R  C  W  Q  L  L  P  R  R  *  W  I  T  R  P  V  K  R  V  H  R  L  L  Q  L  L  K  W  I  W  V  L  G  A  T  R  F  I  L  G  L  D  F  L  I  N  L  T  S  Y  K   : D  I  F  M  G  R  E  S  L  S  L  L  T  L  Q  L  P  L  Y  I  L  I  K  L  *  A  L  *  Q  M  E  T  L  M  L  P  *  K  V  S  F  C  Q  M  V  S  N  L  K  T  W :   K  L  L  *  K  S  L  I  K  P  S  N  Q  G  W  I  V  V  V  H  L  S  L  S  V  V  E  L  *  V  T  C  V  V  M  P  P  L  P  T  F  V  E  L  I  L  F  R  S  P  P  L  L  W  H  R :   *  I  L  L  L  E  A  K  L  E  *  T  I  H  L  V  K  I  *  L  E  H  S  T  S  H  N  V  C  L  *  T  R  I  P  *  I  L  Y  Q  I  E  N  *  H  L  A  S  Q  K  *  *  N  M  D  S  L  E  M  L  S  F  S  S  G  K  N  R  I  C  H  Y  Y  *  Q   : G  T  P  L  H  L  P  M  L  S  S  V  P  V  K  T  K  Q  M  L  F  L  K  M  R  R  K  A  E  *  G  Q  L  *  T  W  V  I  P  L  V  M :   Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  I  Y  L  L  M  H  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135292" stop="134901"/>
                    <exon start="132909" stop="132759"/>
                    <exon start="132669" stop="132502"/>
                    <exon start="132362" stop="132136"/>
                    <exon start="131681" stop="131558"/>
                    <exon start="131144" stop="131082"/>
                    <exon start="130921" stop="130778"/>
                    <exon start="130695" stop="130564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHLTSHPQIVDATIFLLPSATPTFMASSFCPKQALSFTNSTHQLHQSRAIPRDIHVRFPAPVSSPSSRCGLKSKATTRLKVLATSATKVMDHSSSKASSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 333000 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 10090 bytes was the average size of a spliced alignment
$ 33176 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1579 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:29:10
-->
