<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:22:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326805" ref_strand="+" ref_description="SGN-E326805 [cTOC-25-O24]">
      <seq>gcttacgctactctgcgttaaaatcaaccatgagtgcgatctttattgtttttaatctccctttcttcctcatcgacccaatctatgcaccagtgtaatctgaaccgtcatgatgaatatagaaattgtaccagataggagttttgaccgtaaaaattgagaatgtagttatcaagaatcagccattccaatattactagttgaattgtgggattatttcaatctaacaccgcgtaagtaagaatgtttggtgttcatttctatgatttcatttcagtgactgctcaaggttggtttttgtaattctggcaagatgtgctgacaacttactgtgtgagaggatgaggataagataagatctcgacaattgaatagaagaaaataatcttttcagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaaatattattgggaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12" g_stop="405" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="406" i_stop="1035" i_length="630">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1036" g_stop="1442" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="801" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E326805" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12" e_stop="405"/>
          <exon e_start="1036" e_stop="1442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAGGTGTGTAGTAAAATTTTGAAGTAACACATATTGTCCACTATAGCCGTCAAAAGTATCCATCCAATATCATTTTTAGCAATGCACTTGCGATGGAAACTATGTTGCTTTTTGGGAAAGAAACTTTTATCACGACACACAAAAAAACAGAGACAAGGGTGGTGGTTAACTGATGATGCCCCACCAAATTGCTGACATAAGGATAAATTATAATGACAGGCCGTTTTCTAATTTCTTAGTTAATTATGCAAGTGGCTTAAAGGTCTTCCATCATGGTCATATTCTATTGTCATTTATCGTAAATATATATCCGCAAGTTTGCCATAATCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</genome_strand>
        <mrna_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAAATATTATTGGGAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274429" ref_strand="+" ref_description="SGN-E274429 [cLEN-19-G3]">
      <seq>tcaagcataaagactccttcacagttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactgtgtgtattccttgaaggtggatgatgatgacatggagaacgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="430" stop="2505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="730" g_stop="843" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="844" i_stop="1035" i_length="192">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1036" g_stop="1287" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="366" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2140" g_stop="2205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="432" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E274429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="730" e_stop="843"/>
          <exon e_start="1036" e_stop="1287"/>
          <exon e_start="2140" e_stop="2205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</genome_strand>
        <mrna_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTGTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541800" ref_strand="+" ref_description="SGN-E541800 [TUS-62-M11]">
      <seq>gttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaatcacacaatatgactctgcaactttttcatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="453" stop="1809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="753" g_stop="1509" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E541800" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="753" e_stop="1509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTT</genome_strand>
        <mrna_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTC-AAATCACACAATATGACTCTGCAACTTTTTCATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299879" ref_strand="+" ref_description="SGN-E299879 [cLEW-1-M24]">
      <seq>ttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="454" stop="1654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="754" g_stop="1354" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E299879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="754" e_stop="1354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</genome_strand>
        <mrna_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545629" ref_strand="+" ref_description="SGN-E545629 [TUS-68-J6]">
      <seq>caagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacgnttccacttatattccgcaactatattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="477" stop="2759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="777" g_stop="1287" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="642" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2459" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="735" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E545629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="777" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTA</genome_strand>
        <mrna_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGNTTCCACTTATATTCCGCAACTATATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311326" ref_strand="+" ref_description="SGN-E311326 [cLEZ-18-K21]">
      <seq>gtatcaacaatatctgcagcatagctttatgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggagcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="480" stop="1527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="780" g_stop="1227" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E311326" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="780" e_stop="1227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</genome_strand>
        <mrna_strand>GTATCAACAATATCTGCAGCATAGCTTTATGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGAGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549238" ref_strand="+" ref_description="SGN-E549238 [TUS-68-J6](-)">
      <seq>caacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgttccagcaacttcaaccaaccccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="663" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="963" g_stop="1287" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="457" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2724" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="815" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E549238" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="963" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGC-ACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCA</genome_strand>
        <mrna_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGTTCCAGCAACTTCAACCAACCCCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549137" ref_strand="+" ref_description="SGN-E549137 [TUS-67-K8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttatgtaatgggggttgtgaactactctgctgcacctggggtagaaattactgttaataaatatggttctatttatgtagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="736" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1036" g_stop="1287" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="732" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="746"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E549137" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1036" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATGTAATGGGGGTTGTGAACTACTCTGCTGCACCTGGGGTAGAAATTACTGTTAATAAAT-ATGGTTCTATTTATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544973" ref_strand="+" ref_description="SGN-E544973 [TUS-67-J8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="736" stop="2836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1036" g_stop="1287" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2536" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="553" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E544973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1036" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308976" ref_strand="+" ref_description="SGN-E308976 [cLEY-23-D13]">
      <seq>aagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgggcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="737" stop="2969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1037" g_stop="1287" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="382" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2669" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="685" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E308976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1037" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</genome_strand>
        <mrna_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGGGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716230" ref_strand="+" ref_description="SGN-E716230 [FB16BH07]">
      <seq>gttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="745" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1045" g_stop="1287" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="374" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2725" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="733" r_length="359" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E716230" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1045" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</genome_strand>
        <mrna_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545014" ref_strand="+" ref_description="SGN-E545014 [TUS-67-K8](-)">
      <seq>accaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="831" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1131" g_stop="1287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2140" g_stop="2270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="288" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2367" g_stop="2716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="638" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="656"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E545014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1131" e_stop="1287"/>
          <exon e_start="2140" e_stop="2270"/>
          <exon e_start="2367" e_stop="2716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338335" ref_strand="+" ref_description="SGN-E338335 [cTOE-13-B10]">
      <seq>tttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataataggtaattgatggacaactaccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="844" stop="1933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1144" g_stop="1633" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E338335" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1144" e_stop="1633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATAC</genome_strand>
        <mrna_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGGTAATTGATGGACAACTACCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434684" ref_strand="+" ref_description="SGN-E434684 [STM-60-E22]">
      <seq>caacaccaagccagaccaaacaggagattgctaagtattggaagcagaagcacaagactgaagaagagcacttcctcgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcagtaaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtacatacactctgtgaacaactttaggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgcttgccataaatcttttgataaagcatagaaagtgggagatatgtcaaaatcacacaatatgactctgcaactttgaatagataatacttgagtgttccactttctttgcgtattgtcctactaataagattccttaaaagtcatatattcagccgaaagggccaataataataattaattgatggataattactatacttctttgcccataagcaaaagcttatattgcattagtatatatacatggtcccagtaggctagtatacaaagatgataaaaaaatgttttggatgaagatccattgttattttctggctcagtatgaatataatataagttaaaagagattcataagttgcacttagtgatgaatatagccaatgactgtgacctagcttttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="866" stop="2133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1166" g_stop="1833" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E434684" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1166" e_stop="1833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGC-T-TATT--A-T--TATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTT</genome_strand>
        <mrna_strand>CAACACCAAGCCAGACCAAACAGGAGATTGCTAAGTATTGGAAGCAGAAGCACAAGACTGAAGAAGAGCACTTCCTCGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCAGTAAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTACATACACTCTGTGAACAACTTTAGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGCTTGCCATAAATCTTTTGATAAAGCATAGAAAGTGGGAGATATGTCAAAATCACACAATATGACTCTG---------CA-ACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTATTGTCCTACTAATAAGATTCCTTAAAAGTCATATATTCAGCCGAAAGGGCCAATAATAATAATTAATTGATGGATAATTACTATACTTCTTTGCCCATAAGCAAAAGCTTATATTGCATTAGTATATATACATGGTCCCAGTAGGCTAGTATACAAAGATGA-TAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGGCTCAGTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTAGTGATGAATATAGCCAATGACTGTGACCTAGCTTTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277034" ref_strand="+" ref_description="SGN-E277034 [cLEN-22-I16]">
      <seq>ctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataatagttaattgatggacaactaccatacttctatgcccataagcaaaagcttattattatatatacatggtccctataggctactatacaaagatgattaaaaaaatgttttggatgaagatccattgttattttctgtctcattatgaatataatataagttaaaagagattcataagttgcacttggtgataaatataacaaatgacagtgacctagcttttccttatctcactgctaatttgtagaaactgtgaagattaatctggaacttgtactattaaagattgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="984" stop="2254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1284" g_stop="1954" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E277034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1284" e_stop="1954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</genome_strand>
        <mrna_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541797" ref_strand="+" ref_description="SGN-E541797 [TUS-62-M11](-)">
      <seq>ttgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatgtacaaatagcatcccatctcctgatcgatagggggaaatacttatttttctcgaggataccttgtgaagtgtgatgtttgattgtgagaaagcatagaaaaaaatgatgattccattattatagtagttgatttggattccattatttcgaattaacttgcttacatattgttggttttgttaaggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1593" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1893" g_stop="2270" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2367" g_stop="2712" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="724" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="735"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E541797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1893" e_stop="2270"/>
          <exon e_start="2367" e_stop="2712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</genome_strand>
        <mrna_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544972" ref_strand="+" ref_description="SGN-E544972 [TUS-67-J8](-)">
      <seq>aggaatacaaatactttgtgtatccctgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1844" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2144" g_stop="2270" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2367" g_stop="2716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="476" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E544972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2144" e_stop="2270"/>
          <exon e_start="2367" e_stop="2716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>AGGAATACAAATACTTTGTGTA-TCCCTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716390" ref_strand="+" ref_description="SGN-E716390 [FB16DF10]">
      <seq>cttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1869" stop="101922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2169" g_stop="2270" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2367" g_stop="2726" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="462" r_length="360" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E716390" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2169" e_stop="2270"/>
          <exon e_start="2367" e_stop="2726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCATC</genome_strand>
        <mrna_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302382" ref_strand="+" ref_description="SGN-E302382 [cLEW-27-B1]">
      <seq>attagtcaaaattttaaaacccactgtttccatttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4291" stop="5908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4591" g_stop="4905" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="403" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="501" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E302382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4591" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</genome_strand>
        <mrna_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273507" ref_strand="+" ref_description="SGN-E273507 [cLEN-3-P16]">
      <seq>tttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaactcaaagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4323" stop="7314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4623" g_stop="4905" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="371" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="469" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="570" r_length="101" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6945" g_stop="7014" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="640" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E273507" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4623" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAAC-C--AGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</genome_strand>
        <mrna_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACTCAAAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334157" ref_strand="+" ref_description="SGN-E334157 [cTOD-21-G16]">
      <seq>tttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttacactaaaaatgggggtcaacgcattgcgacggttttatgtacttgtcagatgttgatgaaggggggcgaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggatgaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4327" stop="7539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4627" g_stop="4905" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="367" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="465" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="563" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6945" g_stop="7074" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="691" r_length="128" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7239" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="774" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E334157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4627" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7074"/>
          <exon e_start="7156" e_stop="7239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATC</genome_strand>
        <mrna_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTT-ACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTT-ATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGGCGAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGG-ATGAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706740" ref_strand="+" ref_description="SGN-E706740 [FA30DB11]">
      <seq>gttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttgggggaatgaactatctgtatgtggaaaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4335" stop="7556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4635" g_stop="4905" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="457" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="555" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6945" g_stop="7074" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="685" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7256" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="786" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E706740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4635" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7074"/>
          <exon e_start="7156" e_stop="7256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTG</genome_strand>
        <mrna_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGGGGAATGAACTATCTGTATGTGGAAAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700051" ref_strand="+" ref_description="SGN-E700051 [FA11DH06]">
      <seq>gctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4344" stop="7636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4644" g_stop="4905" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="350" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="448" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6945" g_stop="7074" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="676" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7336" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="856" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E700051" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4644" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7074"/>
          <exon e_start="7156" e_stop="7336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</genome_strand>
        <mrna_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205666" ref_strand="+" ref_description="SGN-E205666 [cLEC-21-C21]">
      <seq>tatattatatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgcgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtacatagttctactggcaagagtatggacagcaaagtccgaaccagttccggaacatttcttgcaagagggcgtgatagggtgatcagggatattgagaaaaggattgccgatttcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4358" stop="6122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4658" g_stop="4905" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="336" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="434" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5822" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="521" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E205666" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4658" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTT</genome_strand>
        <mrna_strand>TATATTATATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGCGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTACATAGTTCTACTGGCAAGAGTATGGACAGCAA...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAGGGTGATCAGGGATATTGAGAAAAGGATTGCCGATTTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303931" ref_strand="+" ref_description="SGN-E303931 [cLEX-4-O12]">
      <seq>gattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagaaggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4383" stop="6128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4683" g_stop="4905" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="311" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5828" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="502" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E303931" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4683" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</genome_strand>
        <mrna_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAAGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344189" ref_strand="+" ref_description="SGN-E344189 [cTOF-16-H23]">
      <seq>aatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4417" stop="7649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4717" g_stop="4905" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4997" g_stop="5084" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="277" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="473" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5834" i_stop="6971" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6972" g_stop="7074" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="573" r_length="100" r_score="0.835"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7156" g_stop="7343" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="760" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7524" g_stop="7534" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="771" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E344189" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4717" e_stop="4905"/>
          <exon e_start="4997" e_stop="5084"/>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6972" e_stop="7074"/>
          <exon e_start="7156" e_stop="7343"/>
          <exon e_start="7524" e_stop="7534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCT</genome_strand>
        <mrna_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCA-AAT--TCTCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694049" ref_strand="+" ref_description="SGN-E694049 [LH_Ea02O15](-)">
      <seq>accaagagcctacgtttaccataacttcttgtccaaggaagaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttctggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactctctgtatgtggaaaaggtggactctctgtaaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaacaaaaaagatgtgagatgcttcattcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="5210" stop="138866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5511" g_stop="5608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="129" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5736" g_stop="5833" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6945" g_stop="7074" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="357" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7156" g_stop="7343" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="545" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7524" g_stop="7610" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="632" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8143" g_stop="8344" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="836" r_length="204" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8345" i_stop="8772" i_length="428">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8773" g_stop="8792" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="856" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E694049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5511" e_stop="5608"/>
          <exon e_start="5736" e_stop="5833"/>
          <exon e_start="6945" e_stop="7074"/>
          <exon e_start="7156" e_stop="7343"/>
          <exon e_start="7524" e_stop="7610"/>
          <exon e_start="8143" e_stop="8344"/>
          <exon e_start="8773" e_stop="8792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCGATTTCTGAGCAAGTTATAAGTAAAAGTAGCAAAATTGGTAAATTCACAAACATGGCAACGATACGTATTGTTATTCGGATGGTAAACACCTTTCGCCTCAAACTCTAAAAACAGAGGAAGGCTACACAACAATTGACTAATCAAATGAAATATGTGAGTTCCACTGATCATTATCAACATCATGCCAAGAAGGAACCTTTTTGAGATATTAACTTTTTGGTAGTACATTTTACTAGTTGGGAAGAATATTTCTAACTTACCTAAAAATCGTACGACAAGATTTAAATTTTAAATACGGGTTTTAAATTTCTTGACCCTAGTGCTTGCCTTTGGTGGTGTTTTACTTCTTAAACTAGCAGAATCGTGGGATATTAAAAATGATAAGTTGATTGTTGGTTTTTATTCCTTACTCTCGTTCTATTCTTAGGAAAAAATCCATTGAAAAGA</genome_strand>
        <mrna_strand>TCCAAGGAAGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCTGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTCTCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAACAAAAAAGATGTGAGATGCTTCATTC............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484401" ref_strand="+" ref_description="SGN-E484401 [cSTE-13-O21]">
      <seq>ctgaatgcggaaaaggtggactctctgtaaaaccaaagatgggtgatgcattgcttttctggagcatgaagcctgatgcaactctagatccatcaagtttgcatggtgagtaatctgcatacaagcagatatggataatgggtgctgaacgttgagaacttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttacgtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactttccatttatgttgatgaatcttgctgtagcttttcagtggtctttttttcttttaccttccaatgcatttttccattaggtttggtgttttagtattgatccttgaggcccataaacttantactaagtccttgaaatgaacaattagtgtattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="6939" stop="8166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7239" g_stop="7866" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E484401" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7239" e_stop="7866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCA--CATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTT</genome_strand>
        <mrna_strand>CTGAATGCGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAACTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATATGGATAATGGGTGCTGAACGTTGAGAACTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTACGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCAGTGGTCTTTTTTTCTTTTAC-CTTCCAATGCATTTTTCCATTAGGTTTGGTGTTTTAGTATTGATCCTTGAGGCCCATAAACTTANTACTAAGTCCTTGAAATGAACAATTAGTGTATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484399" ref_strand="+" ref_description="SGN-E484399 [cSTE-13-O17]">
      <seq>ctgaatgcggaaaaggtggactctctgtaaaaccaaagatgggtgatgcattgcttttctggagcatgaagcctgatgcaactctagatccatcaagtttgcatggtgagtaatctgcatacaagcagatatggataatgggtgctgaacgttgagaacttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttaggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactctccatttatgttgatgaatcttgctgtagcttttcggtggtctttttttctttaacctttcaatgcatttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="6939" stop="8075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7239" g_stop="7783" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E484399" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7239" e_stop="7783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCACATTTTTCCAT</genome_strand>
        <mrna_strand>CTGAATGCGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAACTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATATGGATAATGGGTGCTGAACGTTGAGAACTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTCTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCGGTGGTCTTTTTTTCTTTAACCTTTCAATGCATTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691828" ref_strand="+" ref_description="SGN-E691828 [LH_Ea07C02]">
      <seq>ccggttaaaggtggactctctgtaaaaccaaagatgggtgacccattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="6950" stop="8625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7244" g_stop="7343" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7524" g_stop="7610" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8143" g_stop="8326" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="373" r_length="186" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E691828" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7244" e_stop="7343"/>
          <exon e_start="7524" e_stop="7610"/>
          <exon e_start="8143" e_stop="8326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</genome_strand>
        <mrna_strand>CCGGTTAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACCCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484400" ref_strand="+" ref_description="SGN-E484400 [cSTE-13-O19]">
      <seq>tcaagtttgcatggtgaagtaatctgcataccaagcagaatatggataatgggtgcctgaacgttgaaaaccttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttaggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactttccatttatgttgatgaatcttgctgtagcttttcggttgtctttttttcttttaaccttccaatgcatttttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="7031" stop="8075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7331" g_stop="7782" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E484400" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7331" e_stop="7782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTGCATGGTG-AGTAATCTGCATA-CAAGCAG-ATACGGATAATGGGTG-CTGAACATTGAGAA-CTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCA--CATTTTTCCA</genome_strand>
        <mrna_strand>TCAAGTTTGCATGGTGAAGTAATCTGCATACCAAGCAGAATATGGATAATGGGTGCCTGAACGTTGAAAACCTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCGGTTGTCTTTTTTTCTTTTAACCTTCCAATGCATTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306983" ref_strand="+" ref_description="SGN-E306983 [cLEY-11-J23]">
      <seq>acaccttcttctctttgcctactcttatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="15965" stop="17606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16265" g_stop="16586" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="501" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17306" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="529" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E306983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16265" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTG</genome_strand>
        <mrna_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306790" ref_strand="+" ref_description="SGN-E306790 [cLEY-11-K23]">
      <seq>tttgcctactctnatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="15978" stop="17599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16278" g_stop="16586" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="488" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17299" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="509" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E306790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16278" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTA</genome_strand>
        <mrna_strand>TTTGCCTACTCTNATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591357" ref_strand="+" ref_description="SGN-E591357 [45068]">
      <seq>aatctttatagtaataaggacaaaccccaagatttttcttgaatcgatcgaccaacaaaaaaaagaatggagttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttggttgaaagggttaaatattgttttagctttgccgtatctaccatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggaaccttattaggagcaatgactggagctttgataggccaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggaattggatgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacaaagtcagatgggagccattgatactgcatacgacgagttccctaacattttcgatgtaggcggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgttttcaccttccgttgcatcgatacatggctgttggagacatggatcttgtccattgtgcagaaaggatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16099" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16353" g_stop="16586" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="411" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="495" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="663" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17707" g_stop="17825" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="785" r_length="122" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E591357" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16353" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATG-TTTCACCTTCC-TTGCATCGATACATGGCTGTT-GAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCT</genome_strand>
        <mrna_strand>AATCTTTATAGTAATAAGGACAAACCCCAAGATTTTTCTTGAATCGATCGACCAAC-A-AAAAAAAGAATGGAGTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTGGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACCATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGAACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGCCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGAATTGGATGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAAAGTCAG...............................................................................ATGGGAGCCATTGATACTGCATACGACGAGTTCCCTAACATTTTCGATGTAGGCGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTTCACCTTCCGTTGCATCGATACATGGCTGTTGGAGACATGGATCTTGTCCATTGTGCAGAAAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622803" ref_strand="+" ref_description="SGN-E622803 [73174]">
      <seq>ctttatagtaataaggacaaacccaagatttttcttgaatcgatcgaccaacaaaaaaaagaatggagttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttggttgaaagggttaaatattgttttagctttgccgtatctaccatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggaaccttattaggagcaatgactggagctttgataggccaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16099" stop="17406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16356" g_stop="16586" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17106" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="377" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E622803" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16356" e_stop="16586"/>
          <exon e_start="16958" e_stop="17106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGAT</genome_strand>
        <mrna_strand>CTTTATAGTAATAAGGACAAA-CCCAAGATTTTTCTTGAATCGATCGACCAAC-A-AAAAAAAGAATGGAGTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTGGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACCATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGAACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGCCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371658" ref_strand="+" ref_description="SGN-E371658 [TUS-29-G16](-)">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16257" stop="18257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16557" g_stop="16586" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17707" g_stop="17957" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E371658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16557" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396944" ref_strand="+" ref_description="SGN-E396944 [TUS-44-F9]">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgattctgcttatgacgagttccctaacattttcgatgtggggggggcaaagggtttacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16257" stop="17815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16557" g_stop="16586" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="367" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E396944" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16557" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGG</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGATTCTGCTTATGACGAGTTCCCTAACATTTTCGATGTGGGGGGGGCAAAGGGTTTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371659" ref_strand="+" ref_description="SGN-E371659 [TUS-29-G16]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaatttttctgaaaatataatgtaatttaaaagtgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16258" stop="18257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16558" g_stop="16586" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17707" g_stop="17948" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="702" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E371659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16558" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGA</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTTCTGAAAATATAATGTAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280362" ref_strand="+" ref_description="SGN-E280362 [cLER-1-G18]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16258" stop="18154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16558" g_stop="16586" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17707" g_stop="17854" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="608" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E280362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16558" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378630" ref_strand="+" ref_description="SGN-E378630 [TUS-44-F9]">
      <seq>cacctttttctttgcactagtgggcatcttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16267" stop="17791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16567" g_stop="16586" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="199" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17442" g_stop="17491" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E378630" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16567" e_stop="16586"/>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</genome_strand>
        <mrna_strand>CACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCATCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396943" ref_strand="+" ref_description="SGN-E396943 [TUS-44-F9](-)">
      <seq>gtgcaattttcacctttttttttgcattagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16655" stop="18257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16958" g_stop="17136" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17279" g_stop="17362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17442" g_stop="17609" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17707" g_stop="17957" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="723"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E396943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16958" e_stop="17136"/>
          <exon e_start="17279" e_stop="17362"/>
          <exon e_start="17442" e_stop="17609"/>
          <exon e_start="17707" e_stop="17957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594578" ref_strand="+" ref_description="SGN-E594578 [37832]">
      <seq>cgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacaaagtcagatgggagccattgatactgcatacgacgagttccctaacattttcgatgtaggcggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggtaagacacatttataccttttgttttgctattctattgtctgttattgaattacttaattgattctgaacgctgttctctgtttctatctttccaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccgtgcatcgatacatggctgttgagacatggatcttgtccattgtgcagaagggatctgtaggtgactgtactctgtaaattataacgcggttattttatttcctcatacttggctgtaggatttctctatttctttgtcctcgcttgtaccaattttcctgaaaatataatgtaaattagagttgggctcctttgagcttgatcattgtagttgtttaccaccatgtatagaattttgagcaatcttagtgtaaaacaaaacaacaaaaaagagcacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16990" stop="18321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17290" g_stop="17362" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17442" g_stop="18020" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="652" r_length="579" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18021" i_stop="18266" i_length="246">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18267" g_stop="18271" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="657" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E594578" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17290" e_stop="17362"/>
          <exon e_start="17442" e_stop="18020"/>
          <exon e_start="18267" e_stop="18271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTC-TTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTCCTTTGAGCTTTGATCGTTGTAGTTGTTTACCACTATGTATAGAATTTTGAGCAATTTTAGTGTATTCTACTTCCTCAGAATAGCACTTTGTATTACTGTGCCTTTTGCTTTGCATTCGCCTTGTGCAAGATAACGTCTACCTTGATCTTGATTGACTTAACAAGACATCTGCAATTCTCCTCTTAGACAAGGTCCTTTGATTCTTTGAACCGAGTTGTCTATTGGAAACAACCTCTTTACGTAGGGGATAAGGTCCTACATCCTATCCTACTTCTGAGATTGCACTTGGGTATGTTGTTATTGTTGTAGATAAG</genome_strand>
        <mrna_strand>CGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAAAGTCAG...............................................................................ATGGGAGCCATTGATACTGCATACGACGAGTTCCCTAACATTTTCGATGTAGGCGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACCTTTTGTTTTGCTATTCTATTGTCTGTTATTGAATTACTTAATTGATTCTGAACGCTGTTCTCTGTTTCTATCTTTCCAGGACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCGTGCATCGATACATGGCTGTTGAGACATGGATCTTGTCCATTGTGCAGAAGGGATCTGTAGGTGACTGTACTCTGTAAATTATAACGCGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAAATTAGAGTTGGGCTCCTTTGAGC-TTGATCATTGTAGTTGTTTACCACCATGTATAGAATTTTGAGCAATCTTAGTGT......................................................................................................................................................................................................................................................AAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594672" ref_strand="+" ref_description="SGN-E594672 [37928]">
      <seq>gggtttacctggagatactgttgaaaagatacctaagattgtacttactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggtaagacacatgtatacctttagttttgctattctattgtctgttattgaattacttactggattctgaacgctgtactctgtttctatctttccaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccgtgcatcgatacatggctgtagagacatggatcttgtccattgtgcagacgggatctgtaggtgactgtactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="17204" stop="18143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17504" g_stop="17843" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E594672" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17504" e_stop="17843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTG</genome_strand>
        <mrna_strand>GGGTTTACCTGGAGATACTGTTGAAAAGATACCTAAGATTGTACTTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATGTATACCTTTAGTTTTGCTATTCTATTGTCTGTTATTGAATTACTTACTGGATTCTGAACGCTGTACTCTGTTTCTATCTTTCCAGGACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCGTGCATCGATACATGGCTGTAGAGACATGGATCTTGTCCATTGTGCAGACGGGATCTGTAGGTGACTGTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730119" ref_strand="+" ref_description="SGN-E730119 [LA23AE05]">
      <seq>ctgccttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaagatcggattccagcacaaaaataagagtgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="19651" stop="21091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19951" g_stop="20791" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E730119" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19951" e_stop="20791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</genome_strand>
        <mrna_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAAGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372195" ref_strand="+" ref_description="SGN-E372195 [TUS-30-P10]">
      <seq>ttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="19656" stop="20904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19956" g_stop="20604" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E372195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19956" e_stop="20604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</genome_strand>
        <mrna_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289322" ref_strand="+" ref_description="SGN-E289322 [cLES-18-B24]">
      <seq>actctccctcacccttcctcaactcttttctccacgcgccgccgctttccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggcttccagattttcattactggctatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="19664" stop="20794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="20494" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E289322" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="20494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAA</genome_strand>
        <mrna_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTTCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGCTTCCAGATTTTCATTACTGGCTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731517" ref_strand="+" ref_description="SGN-E731517 [LA27BE07]">
      <seq>gtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="19887" stop="21227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20187" g_stop="20927" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E731517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20187" e_stop="20927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</genome_strand>
        <mrna_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372194" ref_strand="+" ref_description="SGN-E372194 [TUS-30-P10](-)">
      <seq>attcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtatttttcagctgaccaaggcaaagttccggtgcaggatccggttcttcttcttaacggatcgggtaaaggtatcgttaataacatgttcttcgcgaccaatgtggctccctcttatgctccggcagggaaggcactggtttctgtcacgcttgtggggctttatggtgatgtggcagatgaggatttggtggatcgggtcgtgaaggagctatcgggttggtttggggagtcggtagttgggtcatggggttacttgaggatgtacaggatcgggtttgcccaaccgaaccaatgcccacccactaacttgaagaagaacccgaaagtgaaaccgggcttgtacatttgtggagattatgtgactagcgctacttttgatggagctttagtttctgggaaaaaagcagcagaaactttgttacaagataaagctctggttattgtatagcttaattttggtttgagttttttttccacttgtgtaaaagtagaagttttgaatgttgttgatttatttgtatatggaatcataaacgtttcgagatcatttacatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="20451" stop="21783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20751" g_stop="21487" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E372194" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20751" e_stop="21487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</genome_strand>
        <mrna_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421112" ref_strand="-" ref_description="SGN-E421112 [STM-32-E18]">
      <seq>tccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcgaaaagtctggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaagaagatcaaattttctttcttgaggatgaacttctatgcttatattctatcaattttactttctcacttttctgtggtaaatgtaaatgaacgcctctcatttgaacccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26558" stop="24519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26258" g_stop="26135" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24818" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="700" r_length="576" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E421112" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26258" e_stop="26135"/>
          <exon e_start="25395" e_stop="24818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</genome_strand>
        <mrna_strand>TCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATG-AACTTCTATGCTTATATTCTATCAATTTTACTTTCTCACTTTTCTGTGGTAAATGTAAATGAACGCCTCTCA-TTTGAACCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430518" ref_strand="-" ref_description="SGN-E430518 [STM-53-F18]">
      <seq>ttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcgaaaagtctggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaaataaatcaaattttctttctgaaaaaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26549" stop="24616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26249" g_stop="26135" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24903" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="605" r_length="490" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E430518" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26249" e_stop="26135"/>
          <exon e_start="25395" e_stop="24903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</genome_strand>
        <mrna_strand>TTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAATAAATCAAATTTTCTTTC-TGA--AAAAAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354065" ref_strand="+" ref_description="SGN-E354065 [cTOS-16-K24]">
      <seq>agaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26471" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26171" g_stop="26135" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24903" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="530" r_length="493" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E354065" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26171" e_stop="26135"/>
          <exon e_start="25395" e_stop="24903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</genome_strand>
        <mrna_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695439" ref_strand="+" ref_description="SGN-E695439 [LH_Ea06I13](-)">
      <seq>cagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtttgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattttgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtagtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctttgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccacataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggccctaatttattcttttgttgtgcaatgtaatgtttttgatgttcaaggtaacgtttaacttggaacagagtctttattaactttaaagggaggcaagaagatcaaattttctttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27207" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26907" g_stop="26820" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="325" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="24905" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="815" r_length="490" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E695439" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26907" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="24905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTT</genome_strand>
        <mrna_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTTTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTTTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTAGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTTTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCCCTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAAGGTAACGTTTAACTTGGAACAGA-GTCTTTATTAACTTTAAAGGGAGGCAAGAAGATCAAATTTTCTTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373554" ref_strand="+" ref_description="SGN-E373554 [TUS-31-N24](-)">
      <seq>gccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttcttttttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26618" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26318" g_stop="26135" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24906" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="674" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E373554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26318" e_stop="26135"/>
          <exon e_start="25395" e_stop="24906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTTTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292300" ref_strand="+" ref_description="SGN-E292300 [cLET-1-I19](-)">
      <seq>gaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgagcagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtatggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26470" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26170" g_stop="26135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24906" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="526" r_length="490" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E292300" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26170" e_stop="26135"/>
          <exon e_start="25395" e_stop="24906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGCAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTATGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449594" ref_strand="+" ref_description="SGN-E449594 [cSTS-6-P14]">
      <seq>aatctttgaaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagttgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaaatctggcttccactcccacataacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaagaagatcaaattttctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26520" stop="24621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26229" g_stop="26135" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24911" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="580" r_length="485" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E449594" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26229" e_stop="26135"/>
          <exon e_start="25395" e_stop="24911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATG</genome_strand>
        <mrna_strand>AATCTTTGAAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTTGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAATCTGGCTTCCACTCCCACATAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAGAAGATCAAATTTTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745208" ref_strand="+" ref_description="SGN-E745208 [GI|47105838]">
      <seq>agggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28067" stop="24608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27767" g_stop="27358" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="26820" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="778" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="1015" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25395" g_stop="24914" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1497" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1498" polyA_stop="1521"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E745208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1497</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27767" e_stop="27358"/>
          <exon e_start="27187" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="24914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</genome_strand>
        <mrna_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452577" ref_strand="-" ref_description="SGN-E452577 [cSTS-17-C16]">
      <seq>catccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccacataacttggtactgctttgtctactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaatgtttaacttggaacagacgtctttattaacttgattagtaggcaagaagatcaaattttctttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26513" stop="24620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26213" g_stop="26135" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24920" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="539" r_length="460" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="556"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E452577" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26213" e_stop="26135"/>
          <exon e_start="25395" e_stop="24920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</genome_strand>
        <mrna_strand>CATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTACTGCTT----TGT---C--T-------ACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAATGTTTAACTTGGAACAGACGTCTTTATTAACTTGATTAGTAGGCAAGAAGATCAAATTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413828" ref_strand="-" ref_description="SGN-E413828 [STM-18-D5]">
      <seq>aagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaaagtctggctcccactcccacataacttggtactgctttgtctactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaatgtttaacttggaacagacgtctttattaacttgattagtaggcaagaagatcaaattttctttcagtataaaaaaaaaaaggttttaaaaaactcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="25661" stop="24620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25361" g_stop="24920" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E413828" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413828" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25361" e_stop="24920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGC-AAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</genome_strand>
        <mrna_strand>AAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTA---C-TG---------C--T-TTGTCTACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAATGTTTAACTTGGAACAGACGTCTTTATTAACTTGATTAGTAGGCAAGAAGATCAAATTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231128" ref_strand="+" ref_description="SGN-E231128 [cLED-5-C17]">
      <seq>gatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26552" stop="24654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26252" g_stop="26135" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24954" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="560" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E231128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26252" e_stop="26135"/>
          <exon e_start="25395" e_stop="24954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</genome_strand>
        <mrna_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413089" ref_strand="-" ref_description="SGN-E413089 [STM-17-G10]">
      <seq>aatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgccctgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctttgagaggaggtggtatgaacttcccagcgaaaagtttggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggccctaatttattcttttgttgtgcaatgtaatgtttttgatgttccatgtaaaggaaaaaaaaaaaaaaaaaaacccatattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26476" stop="24683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26176" g_stop="26135" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25395" g_stop="24984" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="454" r_length="412" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="476"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E413089" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413089" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26176" e_stop="26135"/>
          <exon e_start="25395" e_stop="24984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAAC</genome_strand>
        <mrna_strand>AATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCCCTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTTTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTTTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCCCTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCCATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370920" ref_strand="+" ref_description="SGN-E370920 [TUS-27-H17](-)">
      <seq>cacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagcttattaggaaagtaactacattttctatattcattcttcagggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="25983" stop="24711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25683" g_stop="25004" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E370920" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25683" e_stop="25004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATG</genome_strand>
        <mrna_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577872" ref_strand="-" ref_description="SGN-E577872 [LE08AG03]">
      <seq>ttttgtgtgtgtaaaatttaagtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacacatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttgtcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaaacggcaaagaaaagagagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagaaccagctcacttagagggccctctgtatctctgaaagtaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtaactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcagtaatttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27209" stop="24727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26912" g_stop="26820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="348" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="25024" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="719" r_length="371" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E577872" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26912" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="25024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTC</genome_strand>
        <mrna_strand>TAAGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTGTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAACGGCAAAGAAAAGAGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAACCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGTAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTA-ACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCAGTAATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465636" ref_strand="+" ref_description="SGN-E465636 [cPRO-21-D6]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttnccagcgnaaagtctggctcccactcccacgtaacttggtactgcttgacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27293" stop="24827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26993" g_stop="26820" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="25126" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="681" r_length="270" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E465636" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26993" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="25126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTC</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTNCCAGCGNAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465054" ref_strand="+" ref_description="SGN-E465054 [cPRO-19-P12]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27293" stop="24938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26993" g_stop="26820" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="25237" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="570" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E465054" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26993" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="25237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGT</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465402" ref_strand="+" ref_description="SGN-E465402 [cPRO-21-C5]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttcttgcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacgggctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaaattgatcgtggtgtgaggagacattttcctgatgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27293" stop="24975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26993" g_stop="26820" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="25275" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="531" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E465402" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26993" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="25275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCT</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTTGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGGCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAA-ATTGATCGTGGTGTGAGGAGACATTTTCCTGATGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462003" ref_strand="+" ref_description="SGN-E462003 [cPRO-10-E2]">
      <seq>gctgaacaaaattccatgtctgtagatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27479" stop="25019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27179" g_stop="26820" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26135" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="597" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25395" g_stop="25320" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="673" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E462003" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27179" e_stop="26820"/>
          <exon e_start="26371" e_stop="26135"/>
          <exon e_start="25395" e_stop="25320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAA</genome_strand>
        <mrna_strand>GCTGAACAAAATTCCATGTCTGTAGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370921" ref_strand="+" ref_description="SGN-E370921 [TUS-27-H17]">
      <seq>ttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaggcaaaattatgtgtaccacgagcacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26353" stop="25134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26053" g_stop="25434" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E370921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26053" e_stop="25434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</genome_strand>
        <mrna_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270424" ref_strand="+" ref_description="SGN-E270424 [cLEM-1-M23]">
      <seq>gggttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaagcaaaattatgtgtaccacgagcacacccatttgacgaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="26354" stop="25363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26056" g_stop="25663" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E270424" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26056" e_stop="25663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</genome_strand>
        <mrna_strand>GGGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAAGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430517" ref_strand="+" ref_description="SGN-E430517 [STM-53-F18]">
      <seq>gctgaacaaaattccatgtctgtagatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27479" stop="25899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27179" g_stop="26820" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26371" g_stop="26199" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="533" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E430517" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27179" e_stop="26820"/>
          <exon e_start="26371" e_stop="26199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGA</genome_strand>
        <mrna_strand>GCTGAACAAAATTCCATGTCTGTAGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691599" ref_strand="+" ref_description="SGN-E691599 [LH_Ea06I13]">
      <seq>ccgtaaaagggagtagtggtggaagtttttagttttggagacctgttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggctaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacgtcgcggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaaacataatgtatggcgtgtaaaggggtttgatacaaatttcgagatctattggcgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28075" stop="26048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27775" g_stop="27358" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="26820" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="786" r_length="369" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448">
            <donor d_prob="0.936" d_score="0.90"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26371" g_stop="26348" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="810" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E691599" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27775" e_stop="27358"/>
          <exon e_start="27187" e_stop="26820"/>
          <exon e_start="26371" e_stop="26348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAA-GGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTA</genome_strand>
        <mrna_strand>CCGTA-AAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGACCTGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCTAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACGTCGCGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAACATAATGTATGGCGTGTAAAGGGGTTTGATACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730196" ref_strand="+" ref_description="SGN-E730196 [LA23BE02]">
      <seq>aatttcttgaaggcatgttgccggccttcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="27958" stop="26676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27658" g_stop="27358" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="26976" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="513" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E730196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27658" e_stop="27358"/>
          <exon e_start="27187" e_stop="26976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</genome_strand>
        <mrna_strand>AATTTCTTGAAGGCATGTTGCCGGCCTTCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347470" ref_strand="+" ref_description="SGN-E347470 [cTOF-33-P15]">
      <seq>actgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaagttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcatgccaacaatttgctggaggatcagagccagattgagtcaagttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatagggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaattccatgtctgttgatgtaatacgaaaagcgtttcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28690" stop="26829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28390" g_stop="28154" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27358" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="654" r_length="417" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27187" g_stop="27129" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="712" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E347470" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28390" e_stop="28154"/>
          <exon e_start="27772" e_stop="27358"/>
          <exon e_start="27187" e_stop="27129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGAT--GGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</genome_strand>
        <mrna_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAAGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCATGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAAGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATAGGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAAC-AAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373555" ref_strand="+" ref_description="SGN-E373555 [TUS-31-N24]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28779" stop="27105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28479" g_stop="28154" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27405" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="694" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E373555" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28479" e_stop="28154"/>
          <exon e_start="27772" e_stop="27405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCC</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407284" ref_strand="+" ref_description="SGN-E407284 [PPI-6-J3]">
      <seq>cttttcttcttcttgtatcttcttcatcttcctttccattctcatctcccacacacattcaactgaaaaacaaatatatatagagagaaaaaggaaaaacaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattcgcataaactctgattgatctttaatggatctgtagatctaacgtttattggctacgttttattgtcattttcacactctgtggttcagtaattgaccggaaattataccatataaggcctaaatacaactaacaaagggagtagtggtgaaagtttttagttttggagagctgctgcatccgtttggatgtcgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtggtacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcaaagccagaattgagtcgggttctttgagcttgcttgattctggcccatatgggaacgtttgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28746" stop="27128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28447" g_stop="28154" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="0.49"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27428" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="657" r_length="347" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E407284" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28447" e_stop="28154"/>
          <exon e_start="27772" e_stop="27428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCT-CC-CA--CATTCAACTGAAAAAC--AGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGT-ATTTTCACACTGTGTGATTCAGTAA-T--------ATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAG-ATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATAT-GGAACGTTTGTTGGG</genome_strand>
        <mrna_strand>CTTTTCTTCTTCTTGTATCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACACACATTCAACTGAAAAACAAATATATATAGAGAGAAAAAGGAAAAACAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCGCATAAACTCTGATTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTTATTGTCATTTTCACACTCTGTGGTTCAGTAATTGACCGGAAATTATACCATATAAGGCCTAAATACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGAAAGTTTTTAGTTTTGGAGAGCTGCTGCATCCGTTTGGATGTCGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGGTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAAAGCCAGAATTGAGTCGGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGGAACGTTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292110" ref_strand="+" ref_description="SGN-E292110 [cLET-1-I19]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28779" stop="27222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28479" g_stop="28154" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27522" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="577" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E292110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28479" e_stop="28154"/>
          <exon e_start="27772" e_stop="27522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268041" ref_strand="+" ref_description="SGN-E268041 [cLEI-15-J17]">
      <seq>aattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28765" stop="27223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28465" g_stop="28154" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27523" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="562" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E268041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28465" e_stop="28154"/>
          <exon e_start="27772" e_stop="27523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</genome_strand>
        <mrna_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290965" ref_strand="+" ref_description="SGN-E290965 [cLET-8-K8]">
      <seq>aagaggaaaaaggaaattaaaaaagctgcctttatttcttcttttatcttcttcgtcatcttcctttccattctaatgtcccacattcacctgaacaacagatatatagagagaaactggaaaacaaccaactgaaaacgaaaccaccataacaggaaaaagacttaatcttttctctgtattacatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgctgaattgtattttcacactgcgtgattcggcaatattatcccatatagggcctaatcacaactaacaaagggagtagtggcggaagtttttagttgtggagagcagtagcatccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="28779" stop="27417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28479" g_stop="28154" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381">
            <donor d_prob="0.598" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27772" g_stop="27717" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="382" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E290965" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28479" e_stop="28154"/>
          <exon e_start="27772" e_stop="27717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTG</genome_strand>
        <mrna_strand>AAGAGGAAAAAGGAAATTAAAAAAGCTGCCTTTATTTCTTCTTTTATCTTCTTCGTCATCTTCCTTTCCATTCTAATGTCCCACATTCACCTGAACAACAGATATATAGAGAGAAACTGGAAAACAACCAACTGAAAACGAAACCACCATAACAGGAAAAAGACTTAATCTTTTCTCTGTATTACATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGCTGAATTGTATTTTCACACTGCGTGATTCGGCAATATTATCCCATATAGGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGCGGAAGTTTTTAGTTGTGGAGAGCAGTAGCATCCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706654" ref_strand="+" ref_description="SGN-E706654 [FA30CC05]">
      <seq>tacccattggaaaatcaagacattgatagtttggagaggcctctgattcatgaaaggagttcaactgtgattgctgacaacaatggatttttacacgatgcctctccaaatgaaattgatttccctggacaagatttgtctgaataccctccagtcagccgaacctcaccagttccaaagccgaagtttgattttgcacagtattatgctttcaatctgacaatatttgccctaaccctgatctattgttcgtttgctcctctggtggttcctgttggtgcagtttactttgggtaccggtatttagttgacaagtacaacttcctgtttgtatacagagtgcgaggtttccctgctggtaatgatgggaggttgatggatactgtattatctatcatgaggttttgtgttgacttgttcctcctttcaatgctacttttcttttctgtacgaggagactcaactaagcttcaagccatattcacacttggattgttagtggtgtataaactcttgccctctgataaggattcttttcagccagcgttattacaaggcatacagactattgataacattgtcgaagggccaactgattatgaggttttctcacaacctacatttgattgggatacgtataattcatgacttgtgaataaaaccaaagatttgtgttgacattttgtatatattcttattttgttacggaagtgttcctgcatctatcagatctctctcctcttttcttggttcatccttttggtggttggaaacagatatttggcttangaccacaagagcacatgttataatgtctaacgggttccactgtagtagcacagtctgtatttctacgatcaggtcttgaccaatctacagagtgaatagatgttgtttgtttaccctcacatctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="37759" stop="39275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38059" g_stop="38975" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="917" r_length="917" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E706654" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38059" e_stop="38975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</genome_strand>
        <mrna_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGATAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTANGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCCTCACATCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413535" ref_strand="+" ref_description="SGN-E413535 [STM-18-E15]">
      <seq>ggaaaaatttccccatgaagctataatggagtagggcgattttcttcaactgtcaaaatttactttctccctaactaactcctctttctctctctttttcgttttcttgattctccctctgtaaacctaacccaattatttcagtcgccattacagttcaagatctgagtttttcttagaaacgaaaaatgtcttcttttgtgattttcttgctaacattgttctcaattttcccatttcgacaatgtcatggccgtcttttcacttttgaaatgcaccaccgtttctctgaaactgtcaagaaacttgctggtccacttcaaaattggccggtaaagggaagtctccagtattatactcagttggccaaccatgataagttgctacatggcaggaggcttttcaaatttgatggaccacttactttctctgatggcaattccactttccggatcagctctcttggattcttgcattacaccacggtgactttgggaacacctgngttgaagtttcttgtggctcttgatactgggagtgacttattttgggtgccttgtgaatgcggcagatgtgcttctactgatgatcctacactntacagctctgattttgagcttagcatatacagcctgaatggatcgtcaactagcaagaaagtcacctgcagtgatagcttgtgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="41896" stop="44229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42247" g_stop="42658" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="469" r_length="389" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42659" i_stop="42794" i_length="136">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42795" g_stop="42933" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="608" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42934" i_stop="43852" i_length="919">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43853" g_stop="43929" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="685" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E413535" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42247" e_stop="42658"/>
          <exon e_start="42795" e_stop="42933"/>
          <exon e_start="43853" e_stop="43929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTCTCTTTTTTCCTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATAATTTCAGTGGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAAAAATGTCTTCTTTTGTGATGTTCTTGCTAACAATAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAGAAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATCTTTATGAAATGATATATTGAGCGAAACGTTGTGGTGTATAACTTAAAGGGTTGATGAAAAGTGCCTTTGACAGCTACAACATTTTGTTGCATCCATATATTCTATGCTATTTTGCACAAGATGTATATGATGGAAATATGAGGAGCTTATTCGAGAGCTTCCCTCTGACGTAGTAAATGATGACTTTTTTCGTGTGAGAAGTGAAAACAACTGTCATTCATTGCAAGCCTGCAATAGTATCCACAAACATCTTTGCCTTTAGGAATGTGGTATACCATGACTCTCATGAGTGGAATTAGATGCTCTGATAAGACATTGGTACAGTAAACTAGACAATGATCACTTGCCAAAGAGATAATATTTACGGGTCCTACTCTTTTGGATGCCATTATTTTGTGAAGCGGTCAAGGAGAATTTTATAACCAAACTTTCACGAGAGTATGCACGATCGTAGAATTCTGTATCTAATTCACTTGTACATTGTTGTCAACTGTGAACAGACAACTAAGTAGTTCTACCCAATGGAACTTTATGGGAACTGATGAACAATTGATTTGTGAAGTGACAGACTTTTATTGCCTAGTTTTCCAGTTCGGATTACCATTTTACTATTAATTGTTCGATTCCATCACATCCTTACTCCAAACTTTGTACATTCATTTTGTCATTTCCTTCTCTAAGCCATGGTTTGATAGAATTATCTTCCTCAAATTTTAAGATGGCAAGGTTAAATATACTGTTAACTTTGATTTGCAAGATAATTTATAAGGTGGTTAGACGGACTGTTGTAGAAATGAGATGCACTTTATTTTGTGGTTCTCTTATATTTTTTCCTTTTCACTCCGGCTGAAGTGGATAATGTCTTTTGCTTCAGGATATTGAGCTTAGCATATACAGCCTGAATGGATCGTCAACTAGCAAGAAGGTCACCTGCAGTGATAGCTTGTGTAC</genome_strand>
        <mrna_strand>CCTCTTTCTCTCTC-TTTTTCGTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATTATTTCAGTCGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACG-AAAAATGTCTTCTTTTGTGATTTTCTTG----C--TAACATTGTTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAA----C------T-GTCA----AGAAACTTGCTGGTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTCCAGTATTATACTCAGTTGGCCAACCATGATAAGTTGCTACATGGCAGGAGGCTTTTCAAATTTGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATT........................................................................................................................................CTTGCATTACACCACGGTGACTTTGGGAACACCTGNGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTNTACAGCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAGCTTAGCATATACAGCCTGAATGGATCGTCAACTAGCAAGAAAGTCACCTGCAGTGATAGCTTGTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418285" ref_strand="+" ref_description="SGN-E418285 [STM-27-O9]">
      <seq>cgattttcttcaactgtcaaaatttactctctccctctgtaaacctaacccaattatttcagtcgccattacagttcaagatctgagtttttcttagaaacgaaaaatgtcttcttttgtgattttcttgctaacattgctctcaattttcccatttcgacaatgtcatggccgtcttttcacttttgaaatgcaccaccgtttctctgaaactgtcaagaaacttgctggtccacttcaaaattggccggtaaagggaagtctccagtattatactcagttggccaaccatgataagttgctacatggcaggaggcttttcaaatttgatggaccacttactttctctgatggcaattccactttccggatcagctctcttggattcttgcattacaccacggtgactttgggaacacctgggttgaagtttcttgtggctcttgatactgggagtgacttattttgggtgccttgtgaatgcggcagatgtgcttctactgatgatcctacactttacagctctgattttgagcttagcatatacagcctgaatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="41920" stop="44187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42248" g_stop="42658" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42659" i_stop="42794" i_length="136">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42795" g_stop="42933" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42934" i_stop="43852" i_length="919">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43853" g_stop="43887" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="561" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E418285" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.043" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42248" e_stop="42658"/>
          <exon e_start="42795" e_stop="42933"/>
          <exon e_start="43853" e_stop="43887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTTTTTTCCTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATAATTTCAGTGGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAAAAATGTCTTCTTTTGTGATGTTCTTGCTAACAATAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAGAAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATCTTTATGAAATGATATATTGAGCGAAACGTTGTGGTGTATAACTTAAAGGGTTGATGAAAAGTGCCTTTGACAGCTACAACATTTTGTTGCATCCATATATTCTATGCTATTTTGCACAAGATGTATATGATGGAAATATGAGGAGCTTATTCGAGAGCTTCCCTCTGACGTAGTAAATGATGACTTTTTTCGTGTGAGAAGTGAAAACAACTGTCATTCATTGCAAGCCTGCAATAGTATCCACAAACATCTTTGCCTTTAGGAATGTGGTATACCATGACTCTCATGAGTGGAATTAGATGCTCTGATAAGACATTGGTACAGTAAACTAGACAATGATCACTTGCCAAAGAGATAATATTTACGGGTCCTACTCTTTTGGATGCCATTATTTTGTGAAGCGGTCAAGGAGAATTTTATAACCAAACTTTCACGAGAGTATGCACGATCGTAGAATTCTGTATCTAATTCACTTGTACATTGTTGTCAACTGTGAACAGACAACTAAGTAGTTCTACCCAATGGAACTTTATGGGAACTGATGAACAATTGATTTGTGAAGTGACAGACTTTTATTGCCTAGTTTTCCAGTTCGGATTACCATTTTACTATTAATTGTTCGATTCCATCACATCCTTACTCCAAACTTTGTACATTCATTTTGTCATTTCCTTCTCTAAGCCATGGTTTGATAGAATTATCTTCCTCAAATTTTAAGATGGCAAGGTTAAATATACTGTTAACTTTGATTTGCAAGATAATTTATAAGGTGGTTAGACGGACTGTTGTAGAAATGAGATGCACTTTATTTTGTGGTTCTCTTATATTTTTTCCTTTTCACTCCGGCTGAAGTGGATAATGTCTTTTGCTTCAGGATATTGAGCTTAGCATATACAGCCTGAATGGATC</genome_strand>
        <mrna_strand>CGATTT-TCT-TCAACTGTCAAAATTTACTCTCTCCCTCTGTAAACCTAACCCAATTATTTCAGTCGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAA-AATGTCTTCTTTTGTGATTTTCTTG----C--TAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAA----C------T-GTCA----AGAAACTTGCTGGTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTCCAGTATTATACTCAGTTGGCCAACCATGATAAGTTGCTACATGGCAGGAGGCTTTTCAAATTTGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATT........................................................................................................................................CTTGCATTACACCACGGTGACTTTGGGAACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAGCTTAGCATATACAGCCTGAATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341934" ref_strand="+" ref_description="SGN-E341934 [cTOF-9-B2]">
      <seq>ctttacctatcttgcggacctatcctatacaaagctttcagaaagtttccattctcaagtacgagacaagcggcgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgaaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatccaattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacagaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgatattgagaaaatagaccatttcccatcacaacctgttaataccacccatgttccacctgcctttgctgttgtgcctggaaatgataatgcagagaaatcacatgaaaggacgacaactactcgtcaaagttcttttgcatcatctgtttatcaaacatgttatttgaacctcataaactgcttcctagcatctgtgatattgctacttttataattgctaccataagctcattctcacactgaggattcaggttgtttttgatggaccctccaaacaaatcactattttgtgacgtagcataacatttgagaatataggatgttngcatttctgttatactacctncgtttcgttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="44385" stop="47892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44685" g_stop="44730" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44814" g_stop="44887" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44979" g_stop="45078" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="220" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45172" g_stop="45229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46360" g_stop="46431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="350" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46526" g_stop="46783" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="608" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46784" i_stop="47481" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47482" g_stop="47592" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E341934" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44685" e_stop="44730"/>
          <exon e_start="44814" e_stop="44887"/>
          <exon e_start="44979" e_stop="45078"/>
          <exon e_start="45172" e_stop="45229"/>
          <exon e_start="46360" e_stop="46431"/>
          <exon e_start="46526" e_stop="46783"/>
          <exon e_start="47482" e_stop="47592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTACCAAAGAATGAAATCAGAATCGATACGACTCTCCACCCGATTTTTTTGTACTTGCAACCCCTTTTTTTTTTCTTTTTTGGTTGTTGTCGTTTTTCATGCTGCCAGCAAGGTTCTTTTTTCACATTTGGTCAATTATTTGGAATATTTTGTGGTTAGGTTGTCTACTTTAAAATAGATTTCGATCTCATGTAATTGTACAAGTAGGGTCTTGAAAAAGTCTAAATGTATCTAATTTCTGTAGGTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACCTCCGTTTCGTTTTAA</genome_strand>
        <mrna_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTTTGATGGACCCTCCAAAC-AAATCACTATTTTGTGACGTAGCATAACATTTGAGAAT-ATAGGATGTTNGCATTTCTGTT-ATACTACCTNCGTTTCGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339273" ref_strand="+" ref_description="SGN-E339273 [cTOF-4-B1]">
      <seq>ctttacctatcttgcggacctatcctatacaaagctttcagaaagtttccattctcaagtacgagacaagcggcgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgaaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatccaattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacagaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgatattgagaaaatagaccatttcccatcacaacctgttaataccacccatgttccacctgcctttgctgttgtgcctggaaatgataatgcagagaaatcacatgaaaggacgacaactactcgtcaaagttcttttgcatcatctgtttatcaaacatgttatttgaacctcataaactgcttcctagcatctgtgatattgctacttttataattgctaccataagctcattctcacactgaggattcaggttgtttttgatggaccctncannacaaatcactattttgtgacgtagcataacatttgagaatataggatgttgcattttctgttaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="44385" stop="47875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44685" g_stop="44730" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44814" g_stop="44887" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44979" g_stop="45078" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="220" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45172" g_stop="45229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46360" g_stop="46431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="350" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46526" g_stop="46783" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="608" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46784" i_stop="47481" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47482" g_stop="47575" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="701" r_length="93" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E339273" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44685" e_stop="44730"/>
          <exon e_start="44814" e_stop="44887"/>
          <exon e_start="44979" e_stop="45078"/>
          <exon e_start="45172" e_stop="45229"/>
          <exon e_start="46360" e_stop="46431"/>
          <exon e_start="46526" e_stop="46783"/>
          <exon e_start="47482" e_stop="47575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTACCAAAGAATGAAATCAGAATCGATACGACTCTCCACCCGATTTTTTTGTACTTGCAACCCCTTTTTTTTTTCTTTTTTGGTTGTTGTCGTTTTTCATGCTGCCAGCAAGGTTCTTTTTTCACATTTGGTCAATTATTTGGAATATTTTGTGGTTAGGTTGTCTACTTTAAAATAGATTTCGATCTCATGTAATTGTACAAGTAGGGTCTTGAAAAAGTCTAAATGTATCTAATTTCTGTAGGTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTA</genome_strand>
        <mrna_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTTTGATGGACCCTNCANNACAAATCACTATTTTGTGACGTAGCATAACATTTGAGAAT-ATAGGATGTTGCATTTTCTGTTAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413536" ref_strand="-" ref_description="SGN-E413536 [STM-18-E15]">
      <seq>atacaaagctttcagaaagtttccattctcaagtacgagacaagcaacgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgcaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttcctgtcaatgatccaattattgtcatatccacacagaatcaactgatgtattgcctggccattgtgaagagtgatgctctaaatataattggacaaaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgacattgagaaaatagaccatttcccatcacaacccgttaataccacccgtgttccacctgccattgctgttgtgcctggaaatgataatgcagaaagatcccatgaaaggactccaaatactcgtcaaagttcttttgcatcttctgtttttcaaacatgttatttgaacctcataaactgcttcctagcatctctgatattgctacttttgtaaaagctcccaaaaaaaaaaaaaaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="44411" stop="138869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44711" g_stop="44730" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83">
            <donor d_prob="0.807" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44814" g_stop="44887" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="94" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.717" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44979" g_stop="45078" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45172" g_stop="45229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="252" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46360" g_stop="46431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="324" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46526" g_stop="46758" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="557" r_length="233" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46759" i_stop="47222" i_length="464">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47223" g_stop="47239" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="574" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E413536" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44711" e_stop="44730"/>
          <exon e_start="44814" e_stop="44887"/>
          <exon e_start="44979" e_stop="45078"/>
          <exon e_start="45172" e_stop="45229"/>
          <exon e_start="46360" e_stop="46431"/>
          <exon e_start="46526" e_stop="46758"/>
          <exon e_start="47223" e_stop="47239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGT</genome_strand>
        <mrna_strand>ATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCAACGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGCAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTCCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTGATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGACATTGAGAAAATAGACCATTTCCCATCACAACCCGTTAATACCACCCGTGTTCCACCTGCCATTGCTGTTGTGCCTGGAAATGATAATGCAGAAAGATCCCATGAAAGGACTCCAAATACTCGTCAAAGTTCTTTTGCATCTTCTGTTTTTCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTCTGATATTGCTACTTTTGTAAAAGCTCCCAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418286" ref_strand="-" ref_description="SGN-E418286 [STM-27-O9]">
      <seq>tcctgatgcaaatactagcttgattcntagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatcccattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacaaaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcattctcggttggaagaaatttgattgttatgacattgagaaaatagaccatttcccatcacaacccgttaataccacccgtgttccacctgccgttgctgttgtgcctggaaatgataatgcagaaagatcacatgaaaggactacaaatactcgtcaaagttcttttgcatcttctgtttttcaaacatgttatttgaacctcataaactgcttcctagcatctctgatattgctacttttataatagctaccatatggtcattctcacactcaggactcaggtatgcttcttaggacttttaatacatatatagtgcagataatcaaacttgcagagctccaatatggacagaaatttttggtttgcctgctcatatctgattttgaggctaacccatatatataatgtatagaaatgttaatacattaccctatggtagtttatgtatgtaccttatgattgcaatagaacagtgagattgtatagggaaaaaaaaaaaaaaaaaaaaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="44679" stop="138869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44979" g_stop="45078" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45172" g_stop="45229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="158" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46360" g_stop="46431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94">
            <donor d_prob="0.649" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46526" g_stop="46983" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="696" r_length="466" r_score="0.910"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46984" i_stop="47216" i_length="233">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47217" g_stop="47241" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="721" r_length="25" r_score="0.720"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E418286" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44979" e_stop="45078"/>
          <exon e_start="45172" e_stop="45229"/>
          <exon e_start="46360" e_stop="46431"/>
          <exon e_start="46526" e_stop="46983"/>
          <exon e_start="47217" e_stop="47241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAA-CC----ATATAATGTATAGAAATGTTAATACATTACACTATGATAG--T-T-TATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTAC</genome_strand>
        <mrna_strand>TCCTGATGCAAATACTAGCTTGATTCNTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCCATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATTCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGACATTGAGAAAATAGACCATTTCCCATCACAACCCGTTAATACCACCCGTGTTCCACCTGCCGTTGCTGTTGTGCCTGGAAATGATAATGCAGAAAGATCACATGAAAGGACTACAAATACTCGTCAAAGTTCTTTTGCATCTTCTGTTTTTCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTCTGATATTGCTACTTTTATAATAGCTACCATATGGTCATTCTCACACTCAGGACTCAGGTATGCTTCTTAGGAC-TTTTAATACATATATAGTGCAGATAATCAAACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCCATATATATAATGTATAGAAATGTTAATACATTACCCTATGGTAGTTTATGTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTATAGGG.........................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338559" ref_strand="+" ref_description="SGN-E338559 [cTOE-15-K15]">
      <seq>acacttccaaaaatccactactatattatatataaaaataaaataaaagagagtccataatgttaatcatcgccaaagctaaggttgattcgagatttgaagttagtagagacgtaaatgcagttattgattcaagcctaaggtagtagatatgttttagctgtggctgtggaacgaggtggcactgtacaatctcactgttctattgcaatcataaggcacaacagcaaaggcaggtggaacatgggtggtattaacaggttgtgatgggaaatggtctattttctcaatatcataacctgcatgaaggccacaagaccaaaagtatgaaaagaataatcttcttgtaatatctaagttattggaagaaagaacaccaaaaacaatactcacaatcaaatttcttccaaccgaggatgattttttctcgatcaaacacaaagcggtatccagtcatgaagttctctggaaaaagatcagtaagagcaacaacagtcagatatcacaatttggaaatgactagtacaattttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="47465" stop="45989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47165" g_stop="46948" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46947" i_stop="46607" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46606" g_stop="46289" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="536" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E338559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47165" e_stop="46948"/>
          <exon e_start="46606" e_stop="46289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAGGTACATAAACTATCATAGTGTAATGTATTAACATTTCTATACATTATATGGTTAGCCTCAAAATCAGATATGAGCAGGCAAACCAAAAATTTCTGTCCATATTGGAGCTCTGCAAGTATGATTATCTGCACTATATATGTGTTAAAAAGTCCTAAGAAGCATACCTGAATCCTCAGTGTGAGAATGAGCTTATGGTAGCAATTATAAAAGTAGCAATATCACAGATGCTAGGAAGCAGTTTATGAGGTTCAAATAACATGTTTGATAAACAGATGATGCAAAAGAACTTTGACGAGTAGTTGTCGTCCTTTCATGTGATTTCTCTGCATTATCATTTCCAGGCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</genome_strand>
        <mrna_strand>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG.....................................................................................................................................................................................................................................................................................................................................................GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310536" ref_strand="+" ref_description="SGN-E310536 [cLEZ-19-A2]">
      <seq>tttttttttcctttctcaaaatccccttttatctcctcaccttttctctttctttctccctgtatatctatatatcaacatacaaagaatcagtcttttttgtttttccttatacaaacatgcctaattctggtaaaattcgtaattttttccttgccccaattattttcttggcgattcttggataccagttgaagacaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgataagggccgacgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="50669" stop="52341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50969" g_stop="51401" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51951" g_stop="52041" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="524" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E310536" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50969" e_stop="51401"/>
          <exon e_start="51951" e_stop="52041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGT</genome_strand>
        <mrna_strand>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGATAAGGGCCGACGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327993" ref_strand="+" ref_description="SGN-E327993 [cTOC-22-A13]">
      <seq>tttttcctttctcaaatccccttttatctcctcaccttttctctttctttctccctgtatatctatatatcaacatacaaagaatcagtcttttttgtttttccttatacaaacatgcctaattctggtaaaattcgtaattttttccttgccccaattattttcttggcgattcttggataccagttgaagacaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgtcgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgnnctatggagtgcatatctctccaataacacctcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="50673" stop="53151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50973" g_stop="51401" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51951" g_stop="52086" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="564" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52698" g_stop="52851" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="718" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E327993" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50973" e_stop="51401"/>
          <exon e_start="51951" e_stop="52086"/>
          <exon e_start="52698" e_stop="52851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCT-TATGGAGTTGCATATCTCTCCAATAACACCTCATCAT</genome_strand>
        <mrna_strand>TTTTTCCTTTCTC-AAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGNNCTATGGAG-TGCATATCTCTCCAATAACACCTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572713" ref_strand="+" ref_description="SGN-E572713 [31909]">
      <seq>ttttcttatacaaacatgcctgattcttgtaaaattcgtaattttttcgttgccccaattcttttcttggcgattcttggataccagttgcagagaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtgaagggtattttggaccttcatgggttgcctgagaaggggagtgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgccgccttgctgatacaactaatcccacagtgccccttactttttctggaggaaatgaaactttgcagctcagttctttgggattcttgcattatgcaaatgtcactgttggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcaatggaggacgaagaaatcttaatatctacagccctaatacatcttcaacgagtgaggttgttccatgcaatggcactttatgtggacaaaatagacgatgcttagcttcacagaacgcatgttgcttatggagttgcatatctctccaataacacctcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="50773" stop="53153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51073" g_stop="51401" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51951" g_stop="52086" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="465" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52698" g_stop="52853" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="622" r_length="157" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E572713" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51073" e_stop="51401"/>
          <exon e_start="51951" e_stop="52086"/>
          <exon e_start="52698" e_stop="52853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATG-TGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCA</genome_strand>
        <mrna_strand>TTTTCTTATACAAACATGCCTGATTCTTGTAAAATTCGTAATTTTTTCGTTGCCCCAATTCTTTTCTTGGCGATTCTTGGATACCAGTTGCAGAGAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTGAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGAGTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGCCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTACTTTTTCTGGAGGAAATGAAACTTTGCAGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTTGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAATGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAATCTTAATATCTACAGCCCTAATACATCTTCAACGAGTGAGGTTGTTCCATGCAATGGCACTTTATGTGGACAAAATAGACGATGCTTAGCTTCACAGAACGCATGTTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212207" ref_strand="+" ref_description="SGN-E212207 [cLEC-75-K13]">
      <seq>acattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgtcgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgnaaatatatctgtccccagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="50884" stop="53613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51184" g_stop="51401" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51951" g_stop="52086" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="354" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52698" g_stop="52933" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="590" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53165" g_stop="53313" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="739" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E212207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51184" e_stop="51401"/>
          <exon e_start="51951" e_stop="52086"/>
          <exon e_start="52698" e_stop="52933"/>
          <exon e_start="53165" e_stop="53313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATG</genome_strand>
        <mrna_strand>ACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGNAAATATATCTGTCCCCAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395370" ref_strand="+" ref_description="SGN-E395370 [TUS-16-J3]">
      <seq>attgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaggcaaaacagccacgtattcaacctgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="51743" stop="54043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52043" g_stop="52086" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52698" g_stop="52933" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="280" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53165" g_stop="53389" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="505" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53484" g_stop="53619" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="641" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53702" g_stop="53743" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="683" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E395370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52043" e_stop="52086"/>
          <exon e_start="52698" e_stop="52933"/>
          <exon e_start="53165" e_stop="53389"/>
          <exon e_start="53484" e_stop="53619"/>
          <exon e_start="53702" e_stop="53743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGC</genome_strand>
        <mrna_strand>ATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAGGCAAAACAGCCACGTATTCAACCTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206409" ref_strand="+" ref_description="SGN-E206409 [cLEC-23-A1]">
      <seq>ttgcagcaactgtgtgcgtgcccttcagacacgcagtgggggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="51744" stop="53689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52044" g_stop="52086" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52698" g_stop="52933" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="279" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53165" g_stop="53389" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="504" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53484" g_stop="53490" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="511" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E206409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52044" e_stop="52086"/>
          <exon e_start="52698" e_stop="52933"/>
          <exon e_start="53165" e_stop="53389"/>
          <exon e_start="53484" e_stop="53490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACT</genome_strand>
        <mrna_strand>TTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433914" ref_strand="+" ref_description="SGN-E433914 [STM-59-O1]">
      <seq>aaatcttaatatctacagccctaatacgtcttcaacgagtgaggttgttccgtgcaatggcactttgtgtggacaaaagagacgatgcttagcttcacagaacgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaggctccaattgctctggggtgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggccttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgctttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcaattctgaagcaaaacagccacgtgttcaacctgatggtgaaattccttttgagtactgctatgggataagtgcaaatcaaactacgtttgaagttccagatgtaaatttgacnatgaaaggtgggcaacaattatatctttttgatccgataatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="52403" stop="54246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52703" g_stop="52933" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53389" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="456" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53484" g_stop="53619" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="592" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="666" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.640" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53855" g_stop="53946" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="757" r_length="91" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E433914" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52703" e_stop="52933"/>
          <exon e_start="53165" e_stop="53389"/>
          <exon e_start="53484" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCT</genome_strand>
        <mrna_strand>AAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGGTTGTTCCGTGCAATGGCACTTTGTGTGGACAAAAGAGACGATGCTTAGCTTCACAGAACGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAGGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................GTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGCCTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGCTTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCAATTCTGAAGCAAAACAGCCACGTGTTCAACCTGATGGTGAAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACGTTTGAAGTTCCAGATGTAAATTTGACNATGAAAGGTGGGCAACAATTATATCTTTTTGATCCGATAAT-ATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404442" ref_strand="+" ref_description="SGN-E404442 [PPC-14-C19]">
      <seq>aaatcttaatatctacagccctaatacgtcttcaacgagtgaagttgttccgtgcaatggcactttgtgtggacaaaagagacgatgcttagcttcacagaacgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaagggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaggctccaattgctctggggtgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggccttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaagagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaatcacagtaagaagcaagatcactgatcttgctttcacagccattttcgactctgggacttcattcacatacttgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="52403" stop="53890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52703" g_stop="52933" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53389" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="456" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53484" g_stop="53590" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="563" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E404442" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52703" e_stop="52933"/>
          <exon e_start="53165" e_stop="53389"/>
          <exon e_start="53484" e_stop="53590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACG</genome_strand>
        <mrna_strand>AAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAAGTTGTTCCGTGCAATGGCACTTTGTGTGGACAAAAGAGACGATGCTTAGCTTCACAGAACGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAAGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAGGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................GTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGCCTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAAGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATCACAGTAAGAAGCAAGATCACTGATCTTGCTTTCACAGCCATTTTCGACTCTGGGACTTCATTCACATACTTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728190" ref_strand="+" ref_description="SGN-E728190 [LA17AA05]">
      <seq>gacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctcatcgttccccatctgattccatcatctagacctgcagggaaccatgcaccacatttgaatttccttctatacnaacttatgatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53005" stop="55057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="53389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53484" g_stop="53619" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="295" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="395" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="456" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="528" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54536" g_stop="54757" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="751" r_length="223" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E728190" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="53389"/>
          <exon e_start="53484" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCC-CATCTG-TTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAA-TTCCTTCTATTACCAACTTATGATGGCTA</genome_strand>
        <mrna_strand>GACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCT-CATCGTTCCCCATCTGATTCCATCATCTAGACCTGCAGGGAACCATGCACCACATTTGAATTTCCTTCTA-TACNAACTTATGATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614369" ref_strand="+" ref_description="SGN-E614369 [64155]">
      <seq>ctgaatatgtgtttactcattctctctctctgaatgcagcccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggtgaaattccttttgagtactgctatgggataaggtgagccagcttttttattttactttttactttcttgatgtcctttgaactctcaggagtaacgtgctccatttaagcagtgcaaatcaaactaggtttgaagttccagaggtaaatttgacaatgaaaggtggcaaccaattgtatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcgcgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgataaatcaacaactctgcccgtgaacaagcacaattctactgaagcgccttcgcctgccagtgtggtgccagaagccaccaagggaaatgcaagtgcaaatgaacccgttacatcgctcccatctgttccatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53145" stop="54996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53445" g_stop="53619" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53954" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="429" r_length="254" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="490" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="562" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54696" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="723" r_length="161" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E614369" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53445" e_stop="53619"/>
          <exon e_start="53702" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGC-TTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCT</genome_strand>
        <mrna_strand>CTGAATATGTGTTTACTCATTCTCTCTCTCTGAATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGTGAAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTTTATTTTACTTTTTACTTTCTTGATGTCCTTTGAACTCTCAGGAGTAACGTGCTCCATTTAAGCAGTGCAAATCAAACTAGGTTTGAAGTTCCAGAGGTAAATTTGACAATGAAAGGTGGCAACCAATTGTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCGCGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAAATCAACAACTCTGCCCGTGAACAAGCACAATTCTACTGAAGCGCCTTCGCCTGCCAGTGTGGTGCCAGAAGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGTTACATCGCTCCCATCTGTTCCATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392804" ref_strand="+" ref_description="SGN-E392804 [TUS-36-P22]">
      <seq>ctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53203" stop="55081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53503" g_stop="53619" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="291" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54781" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="670" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E392804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53503" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATT</genome_strand>
        <mrna_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396146" ref_strand="+" ref_description="SGN-E396146 [TUS-41-C23]">
      <seq>ctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53203" stop="55075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53503" g_stop="53619" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="291" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54775" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="664" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E396146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53503" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACT</genome_strand>
        <mrna_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395810" ref_strand="+" ref_description="SGN-E395810 [TUS-18-O21]">
      <seq>ctgacacttttaacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctgggacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53213" stop="54222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53503" g_stop="53619" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53922" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="259" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E395810" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53503" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATC</genome_strand>
        <mrna_strand>CTGACACTTTTAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGGACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233342" ref_strand="+" ref_description="SGN-E233342 [cLED-9-K23]">
      <seq>tgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53204" stop="54872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53504" g_stop="53619" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="190" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="290" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="351" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54572" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="460" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E233342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53504" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</genome_strand>
        <mrna_strand>TGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239782" ref_strand="+" ref_description="SGN-E239782 [cLED-29-K5]">
      <seq>aggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53208" stop="54872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53508" g_stop="53619" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="186" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="286" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="347" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54572" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="456" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E239782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53508" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</genome_strand>
        <mrna_strand>AGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243717" ref_strand="+" ref_description="SGN-E243717 [cLED-35-A4]">
      <seq>aataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53211" stop="54906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53511" g_stop="53619" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="283" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="344" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="416" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54606" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="487" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E243717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53511" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCG</genome_strand>
        <mrna_strand>AATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309613" ref_strand="+" ref_description="SGN-E309613 [cLEY-26-D11]">
      <seq>tcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53231" stop="55097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53531" g_stop="53619" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="163" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="324" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="396" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54797" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="658" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E309613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53531" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTC</genome_strand>
        <mrna_strand>TCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374861" ref_strand="-" ref_description="SGN-E374861 [TUS-15-G23]">
      <seq>tcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53272" stop="55155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53572" g_stop="53619" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="122" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="222" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="355" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54855" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="675" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E374861" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53572" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</genome_strand>
        <mrna_strand>TCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204167" ref_strand="-" ref_description="SGN-E204167 [cLEC-13-M3]">
      <seq>aaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattcgttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53400" stop="55155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53616" g_stop="53619" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53702" g_stop="53775" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="78" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="239" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="311" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54536" g_stop="54855" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="631" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E204167" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204167" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53616" e_stop="53619"/>
          <exon e_start="53702" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</genome_strand>
        <mrna_strand>AAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCGTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390365" ref_strand="+" ref_description="SGN-E390365 [TUS-41-C23](-)">
      <seq>ttgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53410" stop="55280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53709" g_stop="53775" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="167" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="228" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="300" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54983" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="748" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E390365" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53709" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>TTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395475" ref_strand="+" ref_description="SGN-E395475 [TUS-16-J3](-)">
      <seq>aagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttatttctgtcctttttccgttcaagattcaatataatacaattcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53412" stop="55280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53712" g_stop="53775" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="164" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="225" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54983" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="745" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E395475" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53712" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>AAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTATTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACAATTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396304" ref_strand="+" ref_description="SGN-E396304 [TUS-44-C23](-)">
      <seq>agcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatagtgatacatttctttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53413" stop="55280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53713" g_stop="53775" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="163" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="224" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="296" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54983" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="745" r_length="449" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E396304" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53713" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATA-TAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>AGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATAGTGATACATTTCTTTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612230" ref_strand="-" ref_description="SGN-E612230 [61990]">
      <seq>aaacagccacgtattcaacctgatggtgaaattccttttgagtactgctatgggataagtgcaaaatcaaactaggtttgaagttccagaggtaaatttgacaatgaaaggtggcaaccaattgtatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcgcgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgataaatcaacaactctgcccgtgaacaagcacaattctactgaagcgccttcgcctgccagtgtggtgccagaagccaccaagggaaatgcaagtgcaaatgaacccgctacatcgctcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattgccaatttatgatggctatcttttccttttttagctattttttgattattatttcttcatgaggcttttatttgtcctctgtataatattgagttctgttgcagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctaatatatgtactgtaaataaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53417" stop="138875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53775" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.640" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="160" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="221" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="293" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54910" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="668" r_length="375" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54911" i_stop="55327" i_length="417">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55328" g_stop="55355" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="696" r_length="28" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E612230" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612230" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54910"/>
          <exon e_start="55328" e_stop="55355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGC-AAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTTGTAAAGGGTATTTTCTTGTTTTGGTTCTGTATGATCCTTAAAACTAAATTAGCAAGTGTATGACCTAATAGTCAATGAAACAATTAACAGCCACGGGAAATCGTTTAGACACCACCAAAGACGACTGCAAAGCTGACTTATACCCAGCTGAGTTGACAAGCCAGCGTATGTGCAAACTGACATCACCATTGCTGTATCAAGGGGAAAATAATGCATGAAATTGTACCTCTGTGGTATTTCTTTCCAAACAAACTTCAGCTCAATAATCAGAACAGAAGTCGCTGTATTGTGAATCTCAAGACGAGTATAGAGGAATTACATTAAGTTTACAGTCGACTACTGTAAAAAAAAAAAAATTGAACATGGTACAA</genome_strand>
        <mrna_strand>AAACAGCCACGTATTCAACCTGATGGTGAAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAAATCAAACTAGGTTTGAAGTTCCAGAGGTAAATTTGACAATGAAAGGTGGCAACCAATTGTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCGCGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAAATCAACAACTCTGCCCGTGAACAAGCACAATTCTACTGAAGCGCCTTCGCCTGCCAGTGTGGTGCCAGAAGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGCTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTGCCAATTTATGATGGCTATCTTTTCCTTTTTTAGCTATTTTTTGATTATTATTTCTTCATGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTGCAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTAATATATGTACTGTAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392896" ref_strand="+" ref_description="SGN-E392896 [TUS-36-P22](-)">
      <seq>ccttttgagtattgctatgggataagtgcaaatcaaaatacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttattttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53553" stop="55280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53750" g_stop="53775" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.640" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="126" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="187" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="259" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54983" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="707" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E392896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53750" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>CCTTTTGAGTATTGCTATGGGATAAG...............................................................................TGCAAATCAAAATACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATTTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433915" ref_strand="-" ref_description="SGN-E433915 [STM-59-O1]">
      <seq>tgagtactgctatgggataagtgcaaatcaaactacgtttgaagttccagatgtaaatttgacaatgaaaggtggcaaccaattatatctttttgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcgcgtaatatttgatcgggagaagatggttttgggttggaaagcatctgattgttatgattctggagaatcaaacgataaatcaacaactctgcccatgaacaagcacaattctactgaagcgccttcgcctgccagtgtggtgccagaggccaccaagggaaatgcaagtgcaactgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattgccaatttatgatggctatcttttccttttttagctattatttgattattatttcttcatgaggcttttatttgtcctctgtataatattgagttctgttgcagcatagaattgaagtgtcccacagcatttttgatattgcagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53455" stop="55188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53755" g_stop="53775" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.640" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53855" g_stop="53954" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="121" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="182" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="254" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54536" g_stop="54888" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="607" r_length="353" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E433915" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433915" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53755" e_stop="53775"/>
          <exon e_start="53855" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTAT</genome_strand>
        <mrna_strand>TGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACGTTTGAAGTTCCAGATGTAAATTTGACAATGAAAGGTGGCAACCAATTATATCTTTTTGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCGCGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCATCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAAATCAACAACTCTGCCCATGAACAAGCACAATTCTACTGAAGCGCCTTCGCCTGCCAGTGTGGTGCCAGAGGCCACCAAGGGAAATGCAAGTGCAACTGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTGCCAATTTATGATGGCTATCTTTTCCTTTTTTAGCTATTATTTGATTATTATTTCTTCATGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTGCAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397878" ref_strand="-" ref_description="SGN-E397878 [TUS-35-L14]">
      <seq>caatgaaaaggtggcaaccaattttatcttttcgatccgataataatgatctcactcccggacggttcaggcgcatactgtttagcccccctgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="53596" stop="55156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53896" g_stop="53954" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54030" g_stop="54090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="121" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296">
            <donor d_prob="0.962" d_score="0.90"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54387" g_stop="54458" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="193" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54536" g_stop="54856" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="514" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E397878" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53896" e_stop="53954"/>
          <exon e_start="54030" e_stop="54090"/>
          <exon e_start="54387" e_stop="54458"/>
          <exon e_start="54536" e_stop="54856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATG-AAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAG</genome_strand>
        <mrna_strand>CAATGAAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGATCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCCCCCCTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391595" ref_strand="+" ref_description="SGN-E391595 [TUS-16-C8](-)">
      <seq>aaaaaaaaaccaacaagggaaatgcaagaagcaaatgaacccgttacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaagggaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttaggtctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="54355" stop="55280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54626" g_stop="54984" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E391595" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54626" e_stop="54984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGAGGCCACCAAGGGAAATGCAAG-TGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTT</genome_strand>
        <mrna_strand>AAAAAAAAACCAACAAGGGAAATGCAAGAAGCAAATGAACCCGTTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAAGGGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTAGGTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395809" ref_strand="+" ref_description="SGN-E395809 [TUS-18-O21](-)">
      <seq>ttatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaagagaagtgtcccacagcttttttgatattgcagtttatacctgatatatgtattgtaaatataactctgataaaaggctctcctttttccgttcaagattcaatataatacaaaagggtcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="54477" stop="55262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54777" g_stop="54983" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E395809" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54777" e_stop="54983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>TTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAAGAGAAGTGTCCCACAGCTTTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATAAAAGGCTCTCCTTTTTCCGTTCAAGATTCAATATAATACAAAAGGGTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377781" ref_strand="+" ref_description="SGN-E377781 [TUS-21-L1](-)">
      <seq>ttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattagacagacgaggttcctgaaaatggatcatggttcagtatgggtgaatagtggccttagtgaatctcaatacgtagcaactttaattgtttttactttattttttactgtatggcctatatttatggttgcatcattgttttgctgtcttaacttgcagagatgtacgttgtaccatgttcaatttttttttttttacagtagtcgactgtaaacttaatgtaattcctctatactcgtcttgagattcacaatacagcgacttctgttctgattattgagctgaagtttgttggaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56056" stop="54914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55756" g_stop="55213" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E377781" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55756" e_stop="55213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</genome_strand>
        <mrna_strand>TTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTG-TTGGAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238142" ref_strand="+" ref_description="SGN-E238142 [cLED-22-J10]">
      <seq>aactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56470" stop="55221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56170" g_stop="56060" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55925" g_stop="55521" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="516" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E238142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56170" e_stop="56060"/>
          <exon e_start="55925" e_stop="55521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGA</genome_strand>
        <mrna_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354750" ref_strand="+" ref_description="SGN-E354750 [cTOS-19-A21]">
      <seq>tccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagnaggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgannagcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56760" stop="55284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56460" g_stop="56060" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55925" g_stop="55584" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="743" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E354750" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56460" e_stop="56060"/>
          <exon e_start="55925" e_stop="55584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGT</genome_strand>
        <mrna_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGNAGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGANNAGCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243445" ref_strand="+" ref_description="SGN-E243445 [cLED-34-I14]">
      <seq>aactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56470" stop="55368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56170" g_stop="56060" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55925" g_stop="55668" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="369" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E243445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56170" e_stop="56060"/>
          <exon e_start="55925" e_stop="55668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAAT</genome_strand>
        <mrna_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353782" ref_strand="+" ref_description="SGN-E353782 [cTOS-10-A13]">
      <seq>tccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56760" stop="55409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56460" g_stop="56060" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55925" g_stop="55709" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="618" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E353782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56460" e_stop="56060"/>
          <exon e_start="55925" e_stop="55709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCT</genome_strand>
        <mrna_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237865" ref_strand="+" ref_description="SGN-E237865 [cLED-18-D22]">
      <seq>tggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="56860" stop="55601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56560" g_stop="56060" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55925" g_stop="55901" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="526" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E237865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56560" e_stop="56060"/>
          <exon e_start="55925" e_stop="55901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTG</genome_strand>
        <mrna_strand>TGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377782" ref_strand="+" ref_description="SGN-E377782 [TUS-21-L1]">
      <seq>tggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57019" stop="55783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56719" g_stop="56083" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E377782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56719" e_stop="56083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGAC</genome_strand>
        <mrna_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260935" ref_strand="+" ref_description="SGN-E260935 [cLEG-55-J21]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaatcacacctctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57602" stop="55790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57302" g_stop="57189" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="56090" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="787" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E260935" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57302" e_stop="57189"/>
          <exon e_start="56763" e_stop="56090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGC</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTT-AATCACACCTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235263" ref_strand="+" ref_description="SGN-E235263 [cLED-11-C15]">
      <seq>tggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaagagaccctaacttgaaaggttacaacatgaaacctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57019" stop="55896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56719" g_stop="56196" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E235263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56719" e_stop="56196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAA</genome_strand>
        <mrna_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAAGAGACCCTAACTTGAAAGGTTACAACATGAAACCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262043" ref_strand="+" ref_description="SGN-E262043 [cLEG-58-H16]">
      <seq>aggtctagattttcacactcgagctttgcagcatatcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcatatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacataagataaatctgcctaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaagacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagatggataaacagtcggaaactgtgtgggaagcttatctcagagagaacagggagaaaaagaagtccaggataggtaacgccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgctaaaggggataaggattcccaacgtaagagcaccatgaaagggaagcagagccttgaagcatctgaagaagctgaagccagtacagcagagcttgagctattacttgcagatgacaaaggaggagaccctatcttgaagggttacgacatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57600" stop="55902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57300" g_stop="57189" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="56202" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="674" r_length="562" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E262043" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57300" e_stop="57189"/>
          <exon e_start="56763" e_stop="56202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAAC</genome_strand>
        <mrna_strand>AGGTCTAGATTTTCACACTCGAGCTTTGCAGCATATCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACATAAGATAAATCTGCCTAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAAGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGATGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAGAGAACAGGGAGAAAAAGAAGTCCAGGATAGGTAACGCCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCTAAAGGGGATAAGGATTCCCAACGTAAGAGCACCATGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCCAGTACAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTATCTTGAAGGGTTACGACATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257621" ref_strand="+" ref_description="SGN-E257621 [cLEG-45-F24]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaagaccttgaagagacggttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaagtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcgaacgtatcctagaaaagaatgataaacaggcggaaactgtgtgggaagcttatctcagaaagaaaagggagagaaagaagtccaggaaaggtaacaccaaggattcatcataagatgagagcagcgatagtgatcgagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaacatgggataaggattccctacgtaagagcaccaggaaagggaagcagagccttgcagcatctgcagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57602" stop="55939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57302" g_stop="57189" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="56239" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="639" r_length="525" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E257621" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57302" e_stop="57189"/>
          <exon e_start="56763" e_stop="56239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAA</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAAGACCTTGAAGAGACGGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAAGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCGAACGTATCCTAGAAAAGAATGATAAACAGGCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAGAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCATAAGATGAGAGCAGCGATAGTGATCGAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAACATGGGATAAGGATTCCCTACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGCAGCATCTGCAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415658" ref_strand="+" ref_description="SGN-E415658 [STM-21-P15]">
      <seq>cgggccccccctcgagctttgcagtcagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgatgaacagcttgcagatatggagttgaaagagtttttggcatctgatgagagtggaagtgatgatagtgaggaaggtgatgacacagaagataaatctgccaaaaggaagaaaaaacaagatacctaccgtacgttactccagtctggggagggttcagatggaaatgaggacgatgatcaggacatggaggtcacatttaatactggattggaagatctaagtaaacgtatcctagaaaagaaggataaacagtcggaaactgtatgggaagcttatctcagaaagaaaagggagaaaaagaagtcgaggaaaggtaacaccaaggattcatcagaagatgagagcagtgatagtgatcaagaacctatagatgaacctgaggacttcttcatagaagagccttctgcaaaaggggataaggattcccaacataagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaggcaagtagagcagagcttgagctactacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57570" stop="55949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57293" g_stop="57189" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="56249" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="613" r_length="509" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E415658" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57293" e_stop="57189"/>
          <exon e_start="56763" e_stop="56249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGC</genome_strand>
        <mrna_strand>CGGGCCCCCCCTCGAGCTTTGCAG-TCAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCATCTGATGAGAGTGGAAGTGATGATAGTGAGGAA-G-G-TGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACAAGATACCTACCGTACGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAAT---GAGGACGATGATCAGGACATGGAGGTCACATTTAATACTGGATTGGAAGATCTAAGTAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTATGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCGAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGTGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATAGAAGAGCCTTCTGCAAAAGGGGATAAGGATTCCCAACATAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAGGCAAGTAGAGCAGAGCTTGAGCTACTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257455" ref_strand="+" ref_description="SGN-E257455 [cLEG-45-F23]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaatgataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgaaagcagcgatagtgatcaagaacctatagatgaacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="57602" stop="56084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57302" g_stop="57189" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="56384" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="494" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E257455" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57302" e_stop="57189"/>
          <exon e_start="56763" e_stop="56384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGA</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAATGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAAAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345019" ref_strand="+" ref_description="SGN-E345019 [cTOF-22-N1]">
      <seq>gttttagggttttagagagaagaagaacgtattcatggagtcaaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaaaaagatgatgatgagatggacaatgagaaattacgcgcctatgagatgagtcggctcaggtattattatgctgtggtggaatgcgattcaagtgctacagctgattatctttacaaaacttgtgatgggggttgagtttgagagaacatcaaacaaattagatttgaggtttattccagattccatggaattcaagcatcaaccacgtgacattgcaacagaggcccctgcagattatgaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="60215" stop="56924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59915" g_stop="59470" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59469" i_stop="57887" i_length="1583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57886" g_stop="57820" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57819" i_stop="57599" i_length="221">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57598" g_stop="57436" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="677" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57435" i_stop="57318" i_length="118">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57317" g_stop="57224" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="771" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E345019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59915" e_stop="59470"/>
          <exon e_start="57886" e_stop="57820"/>
          <exon e_start="57598" e_stop="57436"/>
          <exon e_start="57317" e_stop="57224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAGGTATACAATGAAAAAGACAGCATTTTTGTTGGGTATGATGTTTGAATTTATGGCTTTTAATTATTTTGCAATTTTTTTTGTTTTGGTCTGAATCAGAAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAAAGGTTAGTTTTTTTTTTCTTTTCCAATATGGATTAATTGAATGATCCCTAGAAAGGTGTCAAATTTTGGAAATTTTGTCCTTCGATATGGTAAAATTATAATTGTTTTACATTAACTGTACTATAATTTATAATTGCTTAAACCAACTCTATCAAGATGAATTTGGCCCTGCAGGCGGTTGAATTGGTTGGAATGAGAATATTCAGTTCAGTTTGACCGTTACTGGCCTTGTCTAAATGTTTCATATAACTTTGGAATAACAGTTTGAGCATTTCTGGACACTGGATTAAATTGTTAAGAGATTGTGCCGAGCATTCAATTTTGAAAATAGAAATAGTTGTGGAAAGGTGCTACCTATAAAAAAAAGTTATGCACTGGTGTATTGTGGTGAAGTATTCCTTAGCTTTGAAGTTGAGTTGCAGGCAAAAATAATAGAAATGGTAGTCAGTGTATACGGGAGGCTATCTATGGGTTCATGCATTTGTCTATAATATATGATAGTGTTGGGCGTTGTCTATCATTCATCATACCCTACCGTGGTCATAATGTGGATTGCACCTCGATTCAAACTTATAAGGGGTCACTTGGTTTGTAATATAGATTTCTTAACTACTGAAGTGATCTATAGAATGTTGCTGGTAGATACCTCTGCATAGCTAATATTGTTTAGTTTTCGCTTTTCAGTGTTAAGCTCTGCACTCCTTTAAAGCAAAATTTATGTGAAATGTATATATTGTTTACGCTGCATAATGTGAAATAATGAAATATTTAGTAGTAATGCATGAATCAGAACAGAAGACAAATAAATCCCTTGGAGTATGGAATCCCTGTATAATTTATATTTCACTGCACCTTACATTATTCTTTACTTTATAACAAACCTGACACTGTTATTAAAACCCTTTATTATATTCCATAAATAGCCATTAACCAAACTATGCCTTGATGTATTTAACTTCTATAGAACGATTAAATTCTTTTCTCAGCAAGCTGTTATGCTATGTAGGCAGTTGACTTGTATATGCTATTGAGCTCCTTTCTCCCAAGAGGGGGTCAAATAACATCTGTTGCTGTCTATCCATCTGACTTTGGTCTCAAGCGTATGGAAGAGGAGGCTGTCCATGGTCCAGTTGGCCTATTTGACGAGGAAAAGGCAAAAGATGAAGACAGTGATGATGATGAAGAAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAGGTGATGATTTGGTTCTGTGTTTTTTCTGGGTAATGTATCTTTAAGTGATTCTTGCATTTTTTGCCGACTAAAAATGATAACTTGTTGATAAACCTTTATGAAATTTATTTGGTTCCTCTTCTTTTTTTACCCTTATGCTACTCCATTCTGTGTTTATTAATTCCCCGTCCTTCATTATGTATAGGTCTCTTTTCAAAGATACTTTCTTATGTACTTCGCAGGTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGAT-GGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAGGTAATTTGTGGCTACGATTTCTCATCATAGGAGCCTTTAGTTTTAACGGTTATTATTGGCTGAAAACATAAAATCTAATTGTATTTGTGTTCGATTGTTATATTCTTCTGGTACTTAGGCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCA</genome_strand>
        <mrna_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG.............................................................................................................................................................................................................................GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG......................................................................................................................GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447252" ref_strand="+" ref_description="SGN-E447252 [cSTA-25-O18]">
      <seq>aaaacaaggatggttagaacagaaaggggaaaaggccggccgatgcctcctccgcagccggagatgaaagcggcggaggaaatagaactgagaagagtgtcatcaatgattctcgatttgcggcgttacactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcaccgataaaaacttcgcatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaagaagaagaagaagaagaacagggtgagaaacagaagacgcagaaggagaaatcaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagagaccaagagtgacagtgggacgagtgaggaagaaattgaggaccataaattgaagaaaactggcgccgtatcatcagagtccgaagaagatgaagatgaggaggtgggaagcgataattcattggcaagtacgtccgattccgattctgatgatgaaatggccgaagtttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="60171" stop="58995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59871" g_stop="59302" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E447252" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59871" e_stop="59302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATT---G-AG--GAAG-A-AA-AAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGG</genome_strand>
        <mrna_strand>AAAACAAGGATGGTTAGAACAGAAAGGGGAAAAGGCCGGCCGATGCCTCCTCCGCAGCCGGAGATGAAAGCGGCGGAGGAAATAGAACTGAGAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTACACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACCGATAAAAACTTCGCATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAGAAGAAGAAGAAGAAGAACAGGGTGAGAAACAGAAGACGCAGAAGGAGAAATCAAAGGTGTTAGAATCTGAAAGCGATGATGACAGT------------GAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAGGACCATAAATTGAAGAAAACTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAGGAGGTGGGAAGCGATAATTCATTGGCAAGTACGTCCGATTCCGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272596" ref_strand="+" ref_description="SGN-E272596 [cLEM-21-F23]">
      <seq>aaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaagaagaagaagagaccaagagtgacagtgggacgagtgaggaagaaattgaagaccataaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="60173" stop="59097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59873" g_stop="59397" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E272596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59873" e_stop="59397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAA</genome_strand>
        <mrna_strand>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338227" ref_strand="+" ref_description="SGN-E338227 [cTOE-13-C19]">
      <seq>gttccattattgagcacatttatttttttctccatctactattctcaaagcaatgcacttagttccaattactatgcaaaaacatgccctcaagctgaagacatagtaatgaaggttgttaaggaggaagcacagaaagacagaacagtgcccgctacacttctaaggatgcatttccatgattgtttcctacggggttgtgatgcttctattttgttgagctccaaggggaaaaacaccgcggaaaaggacgcgcctcctaatggttctttgcacggattctatgttattgatggtgcaaagagagcagttgaagctatatgtcctggcgtagtgtcttgtgctgatattttagcgtttgctgcaagagatgcagttgtgttatcaggcggaccttactggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="64201" stop="65455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64501" g_stop="64695" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64696" i_stop="64769" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64770" g_stop="64958" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="384" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64959" i_stop="65081" i_length="123">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65082" g_stop="65155" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="458" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E338227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64501" e_stop="64695"/>
          <exon e_start="64770" e_stop="64958"/>
          <exon e_start="65082" e_stop="65155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGGGTAAATAAGCATCTTCGCTAAGCATATTAGTTATTTTTACTGTACTTACTTCCTCTGTTCTACCTTGCTTGAAGGGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTAGTAAGTACATATCCCCTGCAAAAGTTATATACTGAACATCTCTCTCGTGTTTGGATGATGTGGATTTGCATAGAGTGTAATAAATACTATATTGTATAAGCTTATTACTAGTTGTTTTTTCAGTCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</genome_strand>
        <mrna_strand>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG..........................................................................GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA...........................................................................................................................TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349472" ref_strand="+" ref_description="SGN-E349472 [cTOS-1-A21]">
      <seq>tggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacactgcttccaaagcctacattcaacatttctcaactccaacaaagcttccatcaaagaggtctctcactagacgacttggtggctctcttaggtgcgcacactctaggatttacccattgctcatcatttatgaaccgtatatacaacttcaacgccacacatgacatcgatcctacactacgtccatcgtttgcagcaagcttgaagggcatatgtccactcaaaaacagggcaaaaaacgcaggaataagcaatgatccttcaccaacaacatttgataatactcattacaggctaattctacaaaagaaaagtttgttattttcggatcattcattgctcactataccaaaaacgaagagcttagtttataagtttgctacctcaaaagcagcttttcataaggcattttctaattctatgattaagatgagtagccttacaggaggtcaagaagttagaaaaaattgcagggttgtaaactaattaattattattaattctaatttgatatttttatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="64797" stop="66357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65097" g_stop="65244" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65245" i_stop="65327" i_length="83">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65328" g_stop="65768" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="589" r_length="441" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E349472" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65097" e_stop="65244"/>
          <exon e_start="65328" e_stop="65768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAGGTCAGCACCAAACTTGATTTCTTAAAAATGGTCACTCAACTTACATCTGATACGACGATACATTTCTTCTCTCTGGCTTGCAGGTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAATTTAAATT</genome_strand>
        <mrna_strand>TGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG...................................................................................GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269294" ref_strand="+" ref_description="SGN-E269294 [cLEM-18-B23]">
      <seq>atagactaattttaagaaaatcctaaaatggcaccaatttgtaaccttttgttatctagaatttagttttaaaactatttttccaagaaattttgtgattaggcccgactcgaaatcgtgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67143" stop="68984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67443" g_stop="67818" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68684" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="479" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E269294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67443" e_stop="67818"/>
          <exon e_start="68582" e_stop="68684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTC</genome_strand>
        <mrna_strand>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700390" ref_strand="+" ref_description="SGN-E700390 [FA12DH10]">
      <seq>attttaagaaaatcctaaaatggcaccaatttgtaaccttttgttatctagaatttagttttaaaactatttttccaagaaattttgtgattaggcccgactcgaaatcgtgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaaagcagtggtgctcggttttaggatcagggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67151" stop="71037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67451" g_stop="67818" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="487" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="545" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="623" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70737" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="870" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E700390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67451" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATT</genome_strand>
        <mrna_strand>ATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAG-CAGTGGTGCTCGGTTTTAGGATCAGGGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343537" ref_strand="+" ref_description="SGN-E343537 [cTOF-19-O16]">
      <seq>tgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatgggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67261" stop="71000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67561" g_stop="67818" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="377" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="435" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="513" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70700" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="725" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E343537" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67561" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATAT-GGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGA</genome_strand>
        <mrna_strand>TGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373170" ref_strand="+" ref_description="SGN-E373170 [TUS-32-I3]">
      <seq>tatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67275" stop="70963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67575" g_stop="67818" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="363" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="421" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="499" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70663" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="673" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E373170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67575" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTG</genome_strand>
        <mrna_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292777" ref_strand="+" ref_description="SGN-E292777 [cLET-11-N14]">
      <seq>tatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67275" stop="70348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67575" g_stop="67818" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="363" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="421" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70048" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E292777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67575" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTT</genome_strand>
        <mrna_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560750" ref_strand="+" ref_description="SGN-E560750 [20452]">
      <seq>tggaagccatcttgtcgaatacccagaaatcttaatcatccatggcatttgctcactgctttcttaccgtcccggctgatacttcaaacttccacaccgctacttccattcttacccgacccttttcatcttcggtgagttcttctttttcttcctcaaacctcaacacttgcaggctccccaagaatttgaaaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttgttgttattgatgaaaaggagaaagaagcatacccagagcatgagacccaactagcaagcatccgatggcatttatctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttctcgctgagttcatcccttgccctgtattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67311" stop="70970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67603" g_stop="67818" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.72"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="384" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="462" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70670" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="643" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E560750" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67603" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCT</genome_strand>
        <mrna_strand>TGGAAGCCATCTTGTCGAATACCCAGAAATCTTAATCATCCATGGCATTTGCTCACTGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTCCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAG--GCTC------CC-CAAGAATTTGAAAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGTTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATGAGACCCAACTAGCAAGCATCCGATGGCATTTATCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTCGCTGAGTTCATCCCTTGCCCTGTATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342414" ref_strand="+" ref_description="SGN-E342414 [cTOF-8-K15]">
      <seq>ataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67306" stop="71002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67606" g_stop="67818" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="332" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="390" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="468" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70702" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="681" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E342414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67606" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAA</genome_strand>
        <mrna_strand>ATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317389" ref_strand="+" ref_description="SGN-E317389 [cTOA-28-K8]">
      <seq>taaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaatgtttctgaaaagccagtggtgctcggttttangatcagggatattaaccttttgatactgttctctacttcattgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67307" stop="71071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67607" g_stop="67818" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="331" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="389" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="467" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70771" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="748" r_length="281" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E317389" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67607" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCA</genome_strand>
        <mrna_strand>TAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAG-AATGTTTCTGAAAAGCCAGTGGTGCTCGGTTTTANGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298358" ref_strand="+" ref_description="SGN-E298358 [cLET-41-H13]">
      <seq>aaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgctgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaagaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67308" stop="70902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67608" g_stop="67818" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="330" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="388" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70602" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="579" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E298358" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67608" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATG</genome_strand>
        <mrna_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGCTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAAGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297334" ref_strand="+" ref_description="SGN-E297334 [cLET-29-P14]">
      <seq>aaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccggcccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67308" stop="70823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67608" g_stop="67818" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="330" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="388" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70523" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E297334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67608" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCT</genome_strand>
        <mrna_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGGCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411890" ref_strand="+" ref_description="SGN-E411890 [STM-15-M14]">
      <seq>cttgtcggatacccagaaatcttaatcatccatggcatttgctcactgctttcttaccgtcccggctgatacttcaaacttccacaccgctacttccattcttacccgacccttttcatcttcggtgagttcttctttttcttcctcaaacctcaacacttgcaggctctctaatttccccaaaaatttgagaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttgttgttattgatgaaaaggagaaagaagcatacccagagcatgagacccaactagcaagcatccgatggcatttatctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattcaaagcacgtagatgcaaaccttctcgctgagttcatcccttgcccagtattgcttttgcccctatgaagaagaaatgtatctgaaaagcaagtggtgctcgattttagtatcagggatattagcataaacctcacttgagtttattactatcttcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67313" stop="71042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67613" g_stop="67818" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="325" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="461" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70738" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="710" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E411890" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67613" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTA</genome_strand>
        <mrna_strand>CTTGTCGGATACCCAGAAATCTTAATCATCCATGGCATTTGCTCACTGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTCCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAGGCTCTCTAATTTCCCCAAAAATTTGAGAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGTTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATGAGACCCAACTAGCAAGCATCCGATGGCATTTATCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCAAAGCACGTAGATGCAAACCTTCTCGCTGAGTTCATCCCTTGCCCAGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCAAGTGGTGCTCGATTTTAGTATCAGGGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469763" ref_strand="+" ref_description="SGN-E469763 [cSTB-14-K5]">
      <seq>cttgtcggattcccaaaaatcttaatcatccatggcattggctcactgctttcttaccgtcccggctgatacttcaaacttccacaccgctacttccattcttacccgacccttttcatcttcggtgagttcttctttttcttcctcaaacctcaacacttgcaggctctctaatttccccaaaaatttgagaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttgttgttattgatgaaaaggagaaagaagcatacccagagcatgagacccaactagcaagcatccgatggcatttatctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67313" stop="70896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67613" g_stop="67818" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="325" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="461" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70596" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="568" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E469763" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67613" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATG</genome_strand>
        <mrna_strand>CTTGTCGGATTCCCAAAAATCTTAATCATCCATGGCATTGGCTCACTGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTCCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAGGCTCTCTAATTTCCCCAAAAATTTGAGAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGTTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATGAGACCCAACTAGCAAGCATCCGATGGCATTTATCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256639" ref_strand="+" ref_description="SGN-E256639 [cLEG-40-C7]">
      <seq>gtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaagctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgaaggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaagtgaaagaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67316" stop="70894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67616" g_stop="67818" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="322" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="380" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="458" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70594" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="563" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E256639" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67616" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTA</genome_strand>
        <mrna_strand>GTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAAGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAAGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAAGTGAAAGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257354" ref_strand="+" ref_description="SGN-E257354 [cLEG-45-G19]">
      <seq>tcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtatttgctttgcccctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67317" stop="70983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67617" g_stop="67818" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="321" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="379" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="457" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70683" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="651" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E257354" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67617" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGA</genome_strand>
        <mrna_strand>TCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTTGCTTTGCCCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208868" ref_strand="+" ref_description="SGN-E208868 [cLEC-51-B9]">
      <seq>gtacccagaaaacttattcattcatggcatttgctcactgcttccttactgaccaggatgatactacaaacttccacaccgctacttacatccttacccgccccttttcatcttcggtgaggacttctttttcttcctcaaacctcaaaacttgcagcctctctaattaccacaagaatttgagaatcggactcaaagaatctgttaaggctcaagcatctgaagacagcgcaccagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaagctgcatcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaagaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67321" stop="70839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67621" g_stop="67818" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.826" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="317" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="375" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="453" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70490" g_stop="70539" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="503" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E208868" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67621" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAG</genome_strand>
        <mrna_strand>GTACCCAGAAAACTTATTCATTCATGGCATTTGCTCACTGCTTCCTTACTGACCAGGATGATACTACAAACTTCCACACCGCTACTTACATCCTTACCCGCCCCTTTTCATCTTCGGTGAGGACTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTACCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCACCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAAGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442364" ref_strand="+" ref_description="SGN-E442364 [cSTA-33-M11]">
      <seq>cttaatcatccatggcatttgctcagggctttcttaccgtcccggctgatacttcaaacttccacaccgctacttccattcttacccgacccttttcatcttcggtgagttcttctttttcttcctcaaacctcaacacttgcaggctccccaagaatttgaaaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttgttgttattgatgaaaaggagaaagaagcatacccagagcatgagacccaactagcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67333" stop="70335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67633" g_stop="67818" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.72"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="296" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="354" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="411" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E442364" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67633" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCA</genome_strand>
        <mrna_strand>CTTAATCATCCATGGCATTTGCTCAGGGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTCCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAG--GCTC------CC-CAAGAATTTGAAAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGTTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATGAGACCCAACTAGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442368" ref_strand="+" ref_description="SGN-E442368 [cSTA-33-M23]">
      <seq>cttaatcatccatggcatttgctcactgctttcttaccgtcccggctgatacttcaaactttcacaccgctacttccattcttacccgacccttttcatcttccgtgagttcttctttttcttcctcaaacctcaacacttgcaggctccccaagaatttgaaaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttgttgttattgatgaaaaggagaaagaagcatacccagagcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67333" stop="70319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67633" g_stop="67818" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.72"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="296" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="354" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70019" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="395" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E442368" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67633" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAG</genome_strand>
        <mrna_strand>CTTAATCATCCATGGCATTTGCTCACTGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTTCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCCGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAG--GCTC------CC-CAAGAATTTGAAAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGTTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442538" ref_strand="+" ref_description="SGN-E442538 [cSTA-33-L20]">
      <seq>cttaatcatccatggcatttgctcactgctttcttaccgtcccggctgatacttcaaacttccacaccgctacttccattcttacccgacccttttcatcttcggtgagttcttctttttcttcctcaaacctcaacacttgcaggctccccaagaatttgaaaatccgacacaaagcatctgttaaggctcaagcatctgaagccagcgcagccgcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataactgttggtgttattgatgaaaaggagaaagaagcatacccagagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="67333" stop="70317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67633" g_stop="67818" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763">
            <donor d_prob="0.999" d_score="0.72"/>
            <acceptor a_prob="0.826" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="296" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="354" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69979" g_stop="70017" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="393" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E442538" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67633" e_stop="67818"/>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACG</genome_strand>
        <mrna_strand>CTTAATCATCCATGGCATTTGCTCACTGCTTTCTTACCGTCCCGGCTGATACTTCAAACTTCCACACCGCTACTTCCATTCTTACCCGACCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAACACTTGCAG--GCTC------CC-CAAGAATTTGAAAATCCGACACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTAAGGCTCAAGCATCTGAAGCCAGCGCAGCCGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACTGTTGGTG..........................................................................................................................TTATTGATGAAAAGGAGAAAGAAGCATACCCAGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372495" ref_strand="+" ref_description="SGN-E372495 [TUS-32-I2](-)">
      <seq>atcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctatgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagatgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggataggtgaaggaagcaagccaacagccattattggtgaaattgctgataatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaatatgtatttgaaaagaccagtggtgctcggttttaggatcagggatattaaccctttgatactgttctctaattcattgaccatgaaatcaagttttacatttgtggtaagtggtaatagaacagaacaaacaaggtggttcattgctatttgcttcttaatcatgtggagagatatgaatatgttgtttactctttgaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="68280" stop="71195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="132" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="190" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="268" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70490" g_stop="70900" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="681" r_length="413" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E372495" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAA-ATGTATCTGAAAAG-CCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</genome_strand>
        <mrna_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTATGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGATGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGATAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATAATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAATATGTATTTGAAAAGACCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCCTTTGATACTGTTCTCTAATTCATTGACCATGAAATCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGGTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373169" ref_strand="+" ref_description="SGN-E373169 [TUS-32-I3](-)">
      <seq>ggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaaagccagtggtgctcggttttaggatcagggatattaaccttttgatactgttctctacttcattgaccatgaactcaagttttacatttgtggtaagtggtaatagaacagaacaaacaagctggttcattgctatttgcttcttaatcatgtggagaagatatgaatatgttgtttactctttgaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="68280" stop="71195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68582" g_stop="68700" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="129" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69799" g_stop="69856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="187" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69979" g_stop="70056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="265" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70490" g_stop="70900" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="677" r_length="412" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E373169" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68582" e_stop="68700"/>
          <exon e_start="69799" e_stop="69856"/>
          <exon e_start="69979" e_stop="70056"/>
          <exon e_start="70490" e_stop="70900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAG-AGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</genome_strand>
        <mrna_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAAGATATGAATATGTTGTTTACTCTTTGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554440" ref_strand="+" ref_description="SGN-E554440 [cTSC-4-F1]">
      <seq>cactaataataagatatggtgaaagactacgttgatccaccttcagctccgctgtttcaaacagcggagctctacaactggtctttttacagagccttgattgctgaatttgtcgcgacgcttcttttcctctacgttagcgtggctactgttatcggccacaagaagcaacttggtccctgcgatggcgttggacttgttggtattgcatgggcttttggtggcatgatttttgttctcgtgtattccactgctgggatttctggtgggcatataaacccggcagtgacgtttgggttattactagcaaggaatgtgtcattactaagagcggtggcgtatatggtggcgcagtgcttaggagccatttgcggcgttggtttagtgaaaggtgtgatgaaggatgattatacgaagcatggtggcggtgctaataccgtcgcagttggctactcagcgggcgcagcattaggtgctgagattattgctactttccttctcatgtataccgtattttccgccaccgacgccaaaaggaaagcacgtgattcacacgtcccagttctagcaccattgccaattggatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="73551" stop="71248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73251" g_stop="72987" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72986" i_stop="72918" i_length="69">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72917" g_stop="72622" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="561" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72621" i_stop="71577" i_length="1045">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71576" g_stop="71548" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="590" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E554440" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73251" e_stop="72987"/>
          <exon e_start="72917" e_stop="72622"/>
          <exon e_start="71576" e_stop="71548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTGGTACGTAGAATTTAAACACTTTAAATATAAACAACGATTTATGAATAAAAATGTACGTATAATATATAGGTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCAGTAAGTCTCATCCATACTCATATTCATATCACACACTTTTACTTCGTTTCCAAAAATAATTATACACTACTGAATTTGGAAACATCAATGGTATAAAATGTTTAACCCTGCAAGTTTTCAAATGCGTAGAAAAGTTGGGACTACTCAAGGATTACAAATTTCCCAAGTCTTGATTTCTTCTATTAATTATATATATTACATGTCATTCGAATTATATGTAACTTCACAAGAGTTACCATAGTTTAAATTAAAATACATTGATTTATAAAATTTATTCCTATGTATAAATTAGAAACATATATTTATTTATATTTGTCATGTTGCACTTTTCGAAAGTCAATTCGATTAACTTTTAAAGATTACATTAGTTTTGTTATGCTTTTCGAAAGAAAGTTAATTCAATTAATTTTCAAAGTTAACTTAAATTACATTAGTTTTGTTACGCTTTTCAAAAGTCAATTCGATTAATTTTCAAATTTAACTTAGATTACATTAGTTTGATATTTTAAACAAAAAATTTAGATATTCAAAAATTATATATATATTTTGCATATTAATATTATTAAAAAATATATCTTAAAATGTTAGTCAAAATTCTTATAATTTGACTTTAAAAATAGAAACCATGACAAATAAGTGGACAAACTTAGAATCTATTTTTATATATTTACCAACTTTGTTTGATTCTTTTATAAAATGTTTTAAGTCTTATACACAGCAAGAAAATATCAAGTGTGTAAATTTTAGAGAACAAGGCTTAAAATCCTAACAGAAACAAAATAAACCAAGTGTTGACGGGTAGAGTTACCTAATAGTGATATGATGGAAGGAACCAAATGCAGAAATTGACCTGGGCACCACGATATAAAATTGACATATTTACGCATACAACCCCTATAATATTCATAACTGTTGAAAACTATGGATGTAACACTAACAAGACATAATTGAAAAAAAAGGAAGAGAGTGTTGAGAGATTGATATGGATGGGGATACTTACGAAGTCCAGTAAAAGAAAAGATGTTCATCGTTTGTGCACCCACAGGTTCTAGCACCATTGCCAATTGGATTCTC</genome_strand>
        <mrna_strand>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG.....................................................................GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAATGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAGCGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGCACCATTGCCAATTGGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569133" ref_strand="+" ref_description="SGN-E569133 [13525]">
      <seq>caatgacgcagctagtgaggttctaaccgaggcgcgtctattgctggttgaaaagtatttccaaaccccctctttggcctgggttctgccttggccattgagaatttttgaaagggcttcccttctgggttaagccctcaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="77338" stop="138872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77638" g_stop="77778" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77779" i_stop="79267" i_length="1489">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.574" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79268" g_stop="79315" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="189" r_length="48" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E569133" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77638" e_stop="77778"/>
          <exon e_start="79268" e_stop="79315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACGCAGCTAGTGAGGTTCTAACCGAGGCGCGTCTATTGCTGGTTGAAAACTATTTCCAAACCCCCTCATTGGCCTGGGTTTTGCCTTGGCCATTGAGAATTTTTGAAAGGGCTTCCCTTCTGGGTTAAGCCCTCCAATTCTAGTCTAATTTTTTACCTTCTTTCAAAGCCAAGCCAAAAACCACTTTTTTCTTTTACTTTTTGTCAAAATAGTGGAGTTCAATTGACTAAAAATTATCAAGTTTTATCCCTTGGAATCAGGAGTAGGTACAATCCAATGAGTTACTAGCAGAACATGTTTAATACCCAATGGAATTAACACTGATATCTGACATACACAACCACTATTTATTTAGTTCGACATTTCTCATATTGAAATGAGGAGGCATATTGATACATCAAACCAAATTTGTACTTGCCAAAAATGAAGACCACATCTAGTAATACACAAATATGGGAGGACCTTACGTATTTGTGAAACAGAGTCGAATGTAAAGTCTCGTTTATCTGTCGGAGACTCTCATAATCGGGAGACTCCAATATGATGATCAATTGATATTAACCCCTTTGATTCAAGAGGTAGTTGAAGTACAAAAATGTTGGTGTTGGTGTTGTGACTAAAAAAAGCTAGCTTGCCAACTACTTGATTAATCTCTCTATAACAATCTGTTAATAGAGTGGTATTCAATTGAGAATGAATATAAAGTGACTTCATAATGAAAACTGAGATGACAGATATTTATTTTTTGCACTAAGTTAGTGTTGTTGGGGGTGACAATTAGGAGGTGTAGCTGACTGAATTGCAACCCAAGAAGGAAACTAGATTAGATAGGAAAACTCCTATCAGATTCTCTGCTTGACAAAAAAAACACACAGGTGGGGGTCATGAATAGTGATAATAGGCCTACATTAATAAGAGTTGACAGGTACTTCTCTGCATTATCCAGGGTTATTATTACTCCATTTGGCAGTGTAAACGTCCACTCTCAAAAATGGATTCTAATCTTTCTCCACTTGTTTCCTTCTCTCTCACAACCAACACTTTTTTTTAAAAATAATTCTGATAATCATTATTAAAGTTCGATTATATTTGAATTCGTATTGTGTAGGACATCGTTCATAAAAAGTGCTTTCATTAAAAATCTGTATGTCTAGGACTCAAATTGAAACCTTTAATTAAAGATGGAACAGTCTCAACTAACACTTTTAATTTCATGTAATAGTTCTTTTTCGTAAAATATATAACATGACCTAGAAGAAAAAGTAGCTCGTCTAACTTTTTCATCTATGTGGTAGAAGCAGGCTAGCATAGAATTAGAGCGAGGCGATACAATTGGAGTGGTCCTAAGTTTTGATAGTTCTTTTGACTAATTCTTTTTTGGGAAATATATAAGTACTTTCGATTTATGCCCAAATTTATCTTTGTAGATAATTTTCAATGTCTTTCGACCTACATGTCACGTAAGTCAAAAATGAATAAAAGATTATTAATAAAATAAGTTTTAGAGTAATAAGACCTTTAATATAGTATTATTTTTTTGACAATTTGTTAAAACTGTTTGCTTTTTGTTCACTATTGATTATATATTTATGATGTTGAGTTGTTTAATTTAATTGAAAGTACAGTAAAAAAAATTGAAAATCATAGTGAAGTATAACAAACAAACAAAAAAA</genome_strand>
        <mrna_strand>CAATGACGCAGCTAGTGAGGTTCTAACCGAGGCGCGTCTATTGCTGGTTGAAAAGTATTTCCAAACCCCCTCTTTGGCCTGGGTTCTGCCTTGGCCATTGAGAATTTTTGAAAGGGCTTCCCTTCTGGGTTAAGCCCTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338719" ref_strand="+" ref_description="SGN-E338719 [cTOE-21-I19]">
      <seq>cctcactatttttttcttttttcaagaatccaattatgtggtcatcaagcagtgataacaggggactctctgcttcttcttcttcatcttcatcctcatctcattcaccattttctccaagactcaaaacaatggaagaagtgtggaaagatattaatctttcttcacttcaagatcacactacgaattactctagagatcatcatcatcttcatgatcataatcatcaagctgctaattttggtggaatgattttacaagattttttggcaaggccttttgctaatgaatcttcaccagcagcagcagcagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="79947" stop="80863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="80563" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E338719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="80563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</genome_strand>
        <mrna_strand>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715870" ref_strand="+" ref_description="SGN-E715870 [FB15CA05]">
      <seq>gttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgttacacatgttgcatcagaaagaagcttcggaaaaagctaaacatcaagggaggttgtgttgatgattttctttctcatttgatgtgctgttgctgtgctcttgtccaagaattgcgcgaagtcaagatacgtgggacacatggtatagagaagacgaaaataagccctccaaccactcaattcatggaatcctaggaagctaaacctggcttttttagcacaaaatatcagaaagcactatatggaggttcggtgtgtataattgacccagagttgttcattcgtttacatggttactggtgactatacatgtatgtgatgtaagaatctgttctatgtggtgtacatgcaggaatattatggtgtaactatggatgaatatcatgacgtattttttgtgaaaataaaagataacaactactaggttgttgcagttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccggggggggggcccggccccccttccccccaaaaggggggcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="91972" stop="40783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91672" g_stop="91651" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90962" g_stop="90856" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="129" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90754" g_stop="90661" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="223" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90464" g_stop="90360" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="328" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90271" g_stop="90080" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="520" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90079" i_stop="89164" i_length="916">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89163" g_stop="89142" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="542" r_length="22" r_score="0.818"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89141" i_stop="86057" i_length="3085">
            <donor d_prob="0.046" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86056" g_stop="86048" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="551" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86047" i_stop="85442" i_length="606">
            <donor d_prob="0.507" d_score="0.00"/>
            <acceptor a_prob="0.196" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85441" g_stop="85432" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="561" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="85431" i_stop="84860" i_length="572">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84859" g_stop="84817" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="604" r_length="43" r_score="0.512"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="84816" i_stop="84514" i_length="303">
            <donor d_prob="0.000" d_score="0.51"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="84513" g_stop="84498" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="620" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E715870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91672" e_stop="91651"/>
          <exon e_start="90962" e_stop="90856"/>
          <exon e_start="90754" e_stop="90661"/>
          <exon e_start="90464" e_stop="90360"/>
          <exon e_start="90271" e_stop="90080"/>
          <exon e_start="89163" e_stop="89142"/>
          <exon e_start="86056" e_stop="86048"/>
          <exon e_start="85441" e_stop="85432"/>
          <exon e_start="84859" e_stop="84817"/>
          <exon e_start="84513" e_stop="84498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAGGTAAGGAGAAAAAGTTTTTTAAAAAATAAGTACCTGATCATACATGCTGTGTCAACTCATGTGCACTGGTGGTTTTCTTTTTCTTTTCTTTTCTTTTTCAGGGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATGGTATATGCTTCACAGGAAAATTCCACTCCCTATTTCACATGTTTATGATACTTTTTTTTGTGTTAACAAGATTTGGCTGGGAATTGCATAGTAATTTCTTAACTTGGCTTTTAGCAGATGTGGATTCCTAGTCTGACTTCCTTGTGATTGTATTAAGTTCATTTTTAATATAGTGATTCACCCATCAATGATGCAGGTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAGGTACTGTTTGTCGCTATTGTTACTTGATAAGTGAGTTCCTTTGTGTGTTTAAATCTTGTATGCAATAATGTTATTCTTTGATGCGCAGGTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCAATCTTTGTTAATGTGAAGATTTTATCACACACACACCGCACTCCCACCCCACGGCCCCAAAATAAGAAGAAAAAACACCCCATTTTTCTGTTGTTGAGTGAAGCCATTTAACATAAAGCCATAATCAAGGAATAAAATTCGAATTCCAATTGTAATTTGAATTTTGATAACTGGGCTCATTTCAGTCTACTACGTAATTTTAAAGAAATTTTTTTTATTTGATATATTTTCTGGGAAAAAGTTCTATTAGATACTCAAATAAATTATAAGAAAATAAATTTGAATTCAAATCTTAGTAAGAGTTGAATGGATTAACTTATGGATATCCACTTTTTAGCTCATTAACATGAAACAATTTTCTACAGATAAATATATGAAAAGAAGTATAGAACAAAAGTTAAAGCAGAATGCAAATTCGAGCAATTTCAAATACTACAGTACAGGAGCAAATATTGACCGTCCCCTTACTACAAAATCATATTGTCAATAAAGTAAAATAGCTTGAATTTAAATTAATGAATTTCAAAACGGGATATAAAGAAGAGAAAGGGTGAAACAGTGATGATGTCGTTTTCAAGCAACCGAAAATTTTAATGCTTCTAATTAACTGCTACAAAGGTTTGGTGAGAAATATGTATAAAAGACTTCGACTGAAAAAAATAATCCATATAGTAGTGCGGAAAGACTTTTCGCATGTCTAAAAATATGAATACAAGTGTGACAGTTCAATCAACATTATCAATTCATAATTTGTTAGTAACATAGACAATTTTAGGAACTCAAAAAAAAATAAAAATACATTTATATGATACACATGACTTATATAATTAAGTTTTTATAAGTTCGAACCCAACAGTTGCATGTCATAAAATAATGGTTAGAAGTTGCACTCTTTGTTGGTGCTACTCCTTTGTTGAAAACAAAAAATAAAAAATAATGTAACCACCCTTCCAACCCACGCAAATTAACATAACAACCACTATTTCCTTGACCTTTCTCCTATAATAAAATCAAATCCCACATTAAAATGTTTCATCACTCTTTTTCTAAACTCAAAATGGCTTTGAAGAAATTGCTCATCTCAATTTGTACTTTCAAGGATGTGTTCATGTTAAAAGTGATTCAAGCCAATAACAATAATCAGAACAAAAAATCAAGAGTTCATCATGAAGAGGCTGGTGAAAAATACTGTTGTGTGTGCTTATCAAGATTGAAGGATGGAGATGATAGTAGAGTGTTGCCTTGTTTGCATGAATTTCATCGCGAATGTGTCGATAGGTGGTTAAATGGTGCACGGAGAACGTGTCCTGTTTGTAGGTTTTCGATGGAAGATGGAAACAAGTTGTGTCTAATTACAGAGGATTTAACAGAGGAGATGGTTATATGGTTTTCATCTTTTCATGTTGCTGGTTTCTGATCAACATGCTGATAATGTGCAGTGCAAAACATTGCCTAGTCACTCGCTATATGACACAATATTTGATACCGAAACACTGAAATCATGAAAAATGAGAAGTCACAAATGCTTTCTCTAGTTTTCAATATGTTTAGTTAGGGTGCATTGATTTCGAAATCATGAAAAATGAGAAGTCGCAAATGCTTTCTCTAGTCTTCAATATGTTTGGGCTGCATTCATTTCTAATTTCGTTCTACACCTTTTGATACTTTGAATTATCGTACTTATTATACTCTCAATTAATTAGAAAAACGGATAAGGATCTAAAATACCTTTAAAGTATTGAAAATGGTATAAAATTACCATTTATCCACCTATTGACTCCAAAATGCCTTTTTCATCCACCTATTGGCTCCAAAATACCATTGTCATCCACCTTTATGTTCAAAATTGGCCATTTTTAATTGTTTTAAAATTAAACTCTTTAAATATTTTTTAAATACTTGGCGTTCAAATATTAATTATAAATTTAATTTATAAACCAATCCACTACCCACTCATTACTAACTAAACCTCACTCAATTAATAATTCAATCATAATATCAAAATTGTCATAAACACTACTAAAACACGATGAAATTATAGATTACTGAAAATGACATTCAAAATTATTCGTGTCCGAATCGAAACCCCAATTAAATTTAGGTTGAGCCGCTTATTTAGGAGGACACTTTCTTTCAAAATTGATTAAGAAATTTATGATCAAAGGTAAAGAAGTAATACATCCCGAATTAATTCATGCACTTTTTTTAAATATAATTTTATAAATATTTATGATTTATTTTAAAACCTTTAATATATTATTTTGAAAAAAAGTTACCTATGAAGTAACATCACATAATTAAGACGTAAAAATAATTAAGATAAACATAGTCAGACTTTTAAGTTTATCGGTGATTTTTATGTAGCCACTTGAATGTATGATAATTTACTTCTATATTTTTTAAAAAACACTCAATTTGAAGTAGCTTGCATTAATAATATGATGGGTTCATTAATTTAGAGGGATTTAATAATGGGTGGGTAGTGGATTGATTTATAAATTACACTAATAAGTTAAATTATATCAAATATTTGAGCGCCACTTATTTTAAAAAATATTCAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGATCCAAAAGGTGAATGACAAGGGTATTTTGGACCCAATAGGTGGGTGAGAAGGGCATTTTGGAGCCTATAGGTGGATGAAGTATAATTTTGTACCATTTTCAATACTTTGAGGGTATTTTAGGCCCTTTTCCGTTAGAAAAATATAGAATAGCGGGAGCGATATGGAAAAAAAAAAGTTCCGTTACCGGGAATCGAACCCGGGTCTCCTGGGTGAAAGCCAGATATCCTAACCGCTGGACGATAACGAAAATTGATGTTGGTATGTATTGGAGATATTTAGTTAAACTAATATATACTGTTACGAAGTATTGAGTTGTAACGAACCATACACCAATCAATTTGAGTTCTGATTTTGATTTGTACGTCAAAATAATTGAATTCGAATCTATATGTGAACTTGATTACGATTAATGTTGGATATTTGTTCTGAGTTTGTTACTATGAATAGGTTTTTGAAAATCTCTATATTTGGATAGTCCTATTCTTATAGTAAAAAATTTAGGACTTTATAAATAGAAATTCGTTCCTTCTAACTTGGTTTGTTTAAAGAGAGGATTTGTGAGACACAAGTAATATATATGTTAACAACTATATGTTCTTAGTAAATTGGATGAGATTATTTCTCTCTATATTTTGTGCTCTAGTATTTATATTACTCATCTCTTATGTGCATGTTTGTAAGTTGATCGAATCACATTAATTGTATCTTTTATATATTTCTAGGTTGTCTTTTTACTCATGATTTTTAGATGTTTGCTTATAACTTTTGCATGACGATATTTGATTATTTTCGATCTTTAACACTTAAAATCTAATCCTCTTGAATCAAACAAAAAGCAGACTTTTTTGAAGAAATAATTTGCTACTTTATGCATAGTTTGTTTATTTTTATTTATATAACACTTAAAATCTAATCCTCTTGAATCAAACAAAAAGCAGACATTTTTGAAGGAATAATTTGCCACTTTATGTATAGTTTGTTTATTTTTATTTACTAGTTTATGGACACGTGCGAAGCACGTGTGTTTCATGTAATATTTTATAAATTGGTTAGATTTGACGAAAATATGTGTGTAATGAGTACTAAAATGTAACAATCTCAAATAAATATTATGACAATATTTTTTTTTGTAAAAAACTAAATTAAATAAGACTAATAGAGAGTAAACATAAAAAAACTAAATATGAAAGAAAAAATCAGCATACACATTGTTCTTTAAGACTTTAATCATAACAATAAATATATGGAAAAAGAATACAAAATCAATACATAATTTACCGAGTTTTTGTCACATTCTCTATTATCCAATCAAAATTCAAAAAGTCTTGCATGCAAAAAGCCAGTTGTTTTGCAAGTCTAGTGCACCCATCCAGGTTGCAAATCACAATCCATCAACTGATTCATACTTATTAAATGCAGGGAAAAACAGTAAATACACCTTCAGCTAAATGCCATCGGATGCTTGCTAGTTGTGTCTCGTGCTCTGGGTATGCTTCTTTCCCCTTTTCATCAATAACTGCAAAGATCAGAAAAACATAGATTCCTTGAAATCTACCACTAAAAGTTTCTGTACCAAGAAAGTCAACTCTGTAGTTTAGCTTTTGAAAGAACCGATAGTACACAACATCGGTGACATACCAACAACTGTTATATCAGCTCCATACTTCTTTGCCATAGCAGCGGCAGTTGCTGCAGCCTGATAATGTACCAAGAATAAGTTATGTTTATAAAGTTCACAGTGAATTGAGTAACTATGGCCATTTTTTGTTCGAATTCTAAACTGGCGAGGCATTGCTGGATGCTTCTAATCAATAGAACACGAAGAAGAGGAAACCCAATTATGTATGATAAGCTTAAGTTGAGTCTTTAAAAAGGTTCGGATAAGCATTTTAGAGAAAGGTATGATGAGAAAATGTTCAAATAAGAAAAAGGGAAGAAAGACGACAAAAGAAATAAATAATGCAGTTTGACAAAAGGTGCTGATACAGTCCACTTAATTTGTTCCAAGATTAGCCAATATATGTCTTTTCTCAGAACCAAAAGGGCACATCATTTTATTGAAACCTTTACAGTTTACACCTATTTAAATTAGGTGGTTATAACATGCAAACAGCTCAAACTGCTAAATTGGTAGTTAACTCCATATAAGAATGGCAATGGAGGCAGTGGGTTTGCCACTGGGAGCTATCTCCATAACAGTATAGTGCCATCAGCACGCCCCATTTAAATTTCTTCTGCACTTGCAACCCACTACAGTTTTCTGTCCGGTTAAGTTAATATCCTTCTCCATCAAGTCAAACAAAAGTATAAATCAAATAGAAAAGCATGAAGGTTATGACTTATGAATATTAATAATGATAATTCAATAGGTAATTAAATATAATCTCTGTCAATTAGTTTAAACTTAAACCATATAAATATTGTTAAAACTTGTAGTGAGATACACACCAAAAATTGAAAAAAGAAAATATAAATTCAATTAGCAAAATATGAAATGAATACAAAAATCTATATATAGATCAAACTTTATTATATGAAGGAAACTATATAATAATCATATTGACTTTGTTCAACTGTCTCTAGATTTGTATCTCAAATTATGTCCTTGATTTGAAGAAAACAGGGATGTTAGGTTGCAAGGCCGCAATTAGCCCAATAGAAGAAATAAGCTTGAAGAAAAGAGAAAAGAACCCTTGGATGATGCAGGCATCAGAGGCTTGTGGGAAAACTTAGATATCTTACTATCACTAGACCTGACATTACCTATGCGTTTTTTTGCTTCCTGCGTCCTTACTAGTAAAAAAGGGGCTCTTCGACCAAGAAGGCATTCTGGTAGGAAGGCCGACCACTACATAAGTCGCCATCCGTCCAGGAGAGAAGCAAATCTCTTATTGATTGTGTTTCATATAAAAACATTATTAGGGTCTCTTATTGATTGTGTTTCATATAAAAACATTATTAGGGGAGGGGATACTAAA</genome_strand>
        <mrna_strand>GTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG.....................................................................................................GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG....................................................................................................................................................................................................GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG........................................................................................GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATCCCGGGGGGGGGGCCCGGCCCCCCTTCCCCCCAAAA...............................................................................................................................................................................................................................................................................................................GGGGGGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350311" ref_strand="-" ref_description="SGN-E350311 [cTOS-5-E11]">
      <seq>ttcatcagttacatcaagacatgacntgctttcctcaaagggttcacatcaatatgaagagtggcattcagatctgctgggctgctgttcagaacctctcttatgtattaaaacccttttctttccttgtggtacattttctagaattgccagtgttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgttacacatgttgcatcagaaagaagcttcggaaaaagctaaacatcaagggaggttgtgttgatgattttctttctcatttgatgtgctgttgctgtgctcttgtccaagaattgcgcgaagtcaagatacgtgggacacatggtatagagaagacgaaaataagccctccaaccactcaattcatggaatcctaggaagctaaacctggcttttttagcacaaaatatcagaaagcactatatggaggttcggtgtgtataattgacccagagttgttcattcgtttacatggttactggtgactatacatgtatgtgatgtaagaatctgttctatgtggtgtacatgcaggaatattatggtgtaactatggatgaatatcatgacgtattttttgtgaaaataaaagataacaactactaggttgttgcagttccaacaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="92315" stop="40791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92015" g_stop="91912" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91722" g_stop="91651" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="176" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90962" g_stop="90856" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="283" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90754" g_stop="90661" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="377" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90360" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="482" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90271" g_stop="90080" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="674" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90079" i_stop="89715" i_length="365">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89714" g_stop="89691" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="698" r_length="24" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E350311" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92015" e_stop="91912"/>
          <exon e_start="91722" e_stop="91651"/>
          <exon e_start="90962" e_stop="90856"/>
          <exon e_start="90754" e_stop="90661"/>
          <exon e_start="90464" e_stop="90360"/>
          <exon e_start="90271" e_stop="90080"/>
          <exon e_start="89714" e_stop="89691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTATGTATGTTCCAGAATAATGTTCTATATTCTCCATACCATGTATCTTGTGATGTTTAATTGCCATTATGCTAAAGTACAATGTTTGGATGCTTGAAAGGGTTTGATAACTAACATCATCATTTTGGGCCGATATCATCATATTAGGTGCAATATCAAGATAATCCTAGTTAATGCCGGATTTACTATGCAGGTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAGGTAAGGAGAAAAAGTTTTTTAAAAAATAAGTACCTGATCATACATGCTGTGTCAACTCATGTGCACTGGTGGTTTTCTTTTTCTTTTCTTTTCTTTTTCAGGGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATGGTATATGCTTCACAGGAAAATTCCACTCCCTATTTCACATGTTTATGATACTTTTTTTTGTGTTAACAAGATTTGGCTGGGAATTGCATAGTAATTTCTTAACTTGGCTTTTAGCAGATGTGGATTCCTAGTCTGACTTCCTTGTGATTGTATTAAGTTCATTTTTAATATAGTGATTCACCCATCAATGATGCAGGTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAGGTACTGTTTGTCGCTATTGTTACTTGATAAGTGAGTTCCTTTGTGTGTTTAAATCTTGTATGCAATAATGTTATTCTTTGATGCGCAGGTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCAATCTTTGTTAATGTGAAGATTTTATCACACACACACCGCACTCCCACCCCACGGCCCCAAAATAAGAAGAAAAAACACCCCATTTTTCTGTTGTTGAGTGAAGCCATTTAACATAAAGCCATAATCAAGGAATAAAATTCGAATTCCAATTGTAATTTGAATTTTGATAACTGGGCTCATTTCAGTCTACTACGTAATTTTAAAGAAATTTTTTTTATTTGATATATTTTCTGGGAAAAAGTTCTATTAGATACTCAAATAAATTATAAGAAAATAAATTTGAATTCAAATCTTAGTAAGAGTTGAATGGATTAACTTATGGATATCCACTTTTTAGCTCATTAACATGAAACAATTTTCTACAGATAAATATATGAAAAGAAGTATAG</genome_strand>
        <mrna_strand>TTCATCAGTTACATCAAGACATGACNTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT.............................................................................................................................................................................................GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG.....................................................................................................GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG....................................................................................................................................................................................................GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG........................................................................................GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA.............................................................................................................................................................................................................................................................................................................................................................................ACAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350475" ref_strand="+" ref_description="SGN-E350475 [cTOS-5-C3]">
      <seq>ttaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaagaaaatgagaaactccaactagaactacagcgctcgcaagctaatttagatgtaggtcagtgtgaattcattcagcatcttctggatgtcacagaagtagttgccaataactctctatcattgaagagttcacctgccaaacctctcaaaaagttggatcagagttactcgaatgttgatactgagaaggtatattatgacgattatgctaaaagtgatgagaaacagacaacttcaagaaacacttcatcagttacatcaagacatgacctgctttcctcaaagggttcacatcaatatgaagagtggcattcagatctgctgggctgctgttcagaacctctcttatgtattaaaacccttttctttccttgtggtacattttctagaattgccagtgttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgntacacatgttgcatcagaaagaagcttcggaaaaagctaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="92753" stop="90560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92453" g_stop="92155" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="91912" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="409" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91722" g_stop="91651" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="481" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90962" g_stop="90860" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="584" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E350475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92453" e_stop="92155"/>
          <exon e_start="92021" e_stop="91912"/>
          <exon e_start="91722" e_stop="91651"/>
          <exon e_start="90962" e_stop="90860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAGGTAAGTTGCTTAAGTATAGTAGCTTAACTGTAATTTTCTGTTGGAAGCTGTAGTATCTCTTAAATTAAGTGTGAGGCTAGGGTCCATAGCCTATTTTCAACAGATTCTTTTAAATGCTTAAAAATATTTACAGAAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTATGTATGTTCCAGAATAATGTTCTATATTCTCCATACCATGTATCTTGTGATGTTTAATTGCCATTATGCTAAAGTACAATGTTTGGATGCTTGAAAGGGTTTGATAACTAACATCATCATTTTGGGCCGATATCATCATATTAGGTGCAATATCAAGATAATCCTAGTTAATGCCGGATTTACTATGCAGGTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACAT</genome_strand>
        <mrna_strand>TTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG.....................................................................................................................................AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT.............................................................................................................................................................................................GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGNTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228224" ref_strand="+" ref_description="SGN-E228224 [cLED-2-D17]">
      <seq>tgtataccagtttcgtagggctcagaacgagattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggaggttgaagacatgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaagaaaatgagaaactccaactagaactacagcgctcgcaagctaatttagatgtaggtcagtgtgaattcattcagcatcttctggatgtcacagaagtagttgccaataactctctatcattgaagagttcacctgccaaacctctcaaaaagttggatcagagttactcgaatgttgatactgagaaggtatattatgacgattatgctaaaagtgatgagaaacagacaacttcaagaaacacttcatcagttacatcaagacatgacctgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="94840" stop="91683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94540" g_stop="94450" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92567" g_stop="92155" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="504" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92021" g_stop="91983" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="543" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E228224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94540" e_stop="94450"/>
          <exon e_start="92567" e_stop="92155"/>
          <exon e_start="92021" e_stop="91983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAGGTAAGTTGCTTAAGTATAGTAGCTTAACTGTAATTTTCTGTTGGAAGCTGTAGTATCTCTTAAATTAAGTGTGAGGCTAGGGTCCATAGCCTATTTTCAACAGATTCTTTTAAATGCTTAAAAATATTTACAGAAACACTTCATCAGTTACATCAAGACATGACCTGCTTTC</genome_strand>
        <mrna_strand>TGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG.....................................................................................................................................AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224852" ref_strand="+" ref_description="SGN-E224852 [cLEL-27-P1](-)">
      <seq>tatccggaaacccgagagccattggaacatcttgaagatgcattgaggaggtcttatttattggtcaacagctgtcaggacaggagctacctttatctgttggctatggggtggaacattgtataccagtttcgtagggctcagaacgagattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggagggtgaagacattgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctaacaatgaggcaattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="94959" stop="92094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94659" g_stop="94450" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92567" g_stop="92393" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="386" r_length="176" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E224852" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94659" e_stop="94450"/>
          <exon e_start="92567" e_stop="92393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACA-TGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAG</genome_strand>
        <mrna_strand>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGGTGAAGACATTGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTAACAATGAGGCAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224496" ref_strand="+" ref_description="SGN-E224496 [cLEL-27-P1](-)">
      <seq>agattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggaggttgaagacatgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="94811" stop="92094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94511" g_stop="94450" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92567" g_stop="92393" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="237" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E224496" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94511" e_stop="94450"/>
          <exon e_start="92567" e_stop="92393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAG</genome_strand>
        <mrna_strand>AGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449812" ref_strand="+" ref_description="SGN-E449812 [cSTS-7-H11]">
      <seq>cggagctcccagacaacagacaccgaggagaaacgtttagcttggaaggaatgctgaaaggactacgggattgcggtggagtacagtgaggttaacggcgtcaccgttaattcagctgaaattctgatagctgcacttctattacaacgggatctgttggaagcagtccttttgggtgcattctgattacatatgatgcttttgagtgtattttgatggtactgcatgtctgcgacattgactggaacttgaatctgatgaactatgcataacggatgttttaaagaagtctatattaagtcggcaatgttgttctccccgagttttacttaatgaattcaacctgcttgattaaaagagctggtggagacagcttgattttttgttaaagttttgagcgagttgctgttgttatagtggtcatcctgctgatctggagatgtgcttcttattgaattgaaatttagagagagttgagggaataatctaggatttacatatggcttcattggaccattttggggatgttgcaaatatcgcacagcttactggaatagatgcggtgaggctaattgggatgattgtgaaagctgctgccacagcccggatgcacaagaagaattgcaggcagtttgcacagcatctcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="96177" stop="94406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95877" g_stop="95844" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95491" g_stop="95406" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="115" r_length="81" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95239" g_stop="94706" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="651" r_length="536" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E449812" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95877" e_stop="95844"/>
          <exon e_start="95491" e_stop="95406"/>
          <exon e_start="95239" e_stop="94706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCTCCCAGACAACAGACACCGAAGAGAAACGTGAGTCGTCTTTATCTCTCTCTTCTCTGGTTCACGGAGAAAACAGTTTTTGGGAACTAAAAATTGTCCAAAACTGAAGCTTCTTCTCGCAAACTTATGACTGTAAATCACAGAAAACTATGTCCATTTCCTCTCGATTTTCAGTTCGTAGGAAATTGCATTAACAATTTTATTAGTACTAGTCTGTGTCGTTACCCAAAAAACTGGATTTTAAGTGATTTCAGTAGAAAAACTTGTACATTCGCATAAATCGAGTGTTTCGTGTGAATATATGCATAGAGATATGTGCAGTTTTTTATTTCTTCAATTTTTTTTTGTTGTTGTGTAAATGGTGAATTGAATTCTGTCATAGGTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAGGTAATGTTTGTTGCAATTTTGATGGAGTACTATTGAAAATGTGTCAATTCCTTTCCATTTTATTAGTAACTTTTTTTTTTTTCGTGAAGAAAAAGCGAATAGGTAAATAGAATCATAGACTATTTCTGATATGTAGTTGACTCATTCTTTTGGGATTCCTCCGCAGCTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATC------TGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCTACAGCTCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCT</genome_strand>
        <mrna_strand>CGGAGCTCCCAGACAACAGACACCGAGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................GTTTAGCTT-G---G-AAGGAATGCTGAAAGGACTACGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG......................................................................................................................................................................CTGAAATTCTGATAGCTGCACTTCTATTACAACGGGATCTGTTGGAAGCAGTCCTTTTGGGTGCATTCTGATTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAACTATGCATAACGGATGTTTTAAAGAAGTCTATATTAAGTCGGCAATGTTGTTCTCCCCGAGTTTTACTTAATGAATTCAACCTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGA-TTTTTTGTT-AAAGTTTTGAGCGAGTTGCTGTTGTTATAGTGGTCATCCTGCTGATCTGGAGATGTGCTTCTTATTGAATTGAAATTTAGAGAGAG-TT-GAGGGAATAATCTAGGATTTACATATGGCTTCATTGGACCATTTTGGGGATGTTGCAAATATCGCACAGCTTACTGGAATAGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCCACAGCCCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399721" ref_strand="+" ref_description="SGN-E399721 [cSTC-2-M23]">
      <seq>ggagctcccagacaacagacaccgaggagaaacgtttagcttggaaggaatgctgaaaggactacgggattgcggtggagtacagtgaggttaacggcgtcaccgttaattcagctgaaattctgatagctgcacttctattacaacgggatctgttggaagcagtccttttgggtgcattctgattacatatgatgcttttgagtgtattttgatggtactgcatgtctgcgacattgactggaacttgaatctgatgaactatgcataacggatgttttaaagaagtctatattaagtcggcaatgttgttctccccgagttttacttaatgaattcaacctgcttgattaaaagagctggtggagacagcttgattttttgttaaagttttgagcgagttgctgttgttatagtggtcatcctgctgatctggagatgtgcttcttattgaattgaaatttagagagagttgagggaataatctaggatttacatatggcttcattggaccattttggggatgttgcaaatatcgcacagcttactggaatagatgcggtgaggctaattgggatgattgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="96176" stop="94470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95876" g_stop="95844" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95491" g_stop="95406" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="114" r_length="81" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95239" g_stop="94770" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="586" r_length="472" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E399721" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95876" e_stop="95844"/>
          <exon e_start="95491" e_stop="95406"/>
          <exon e_start="95239" e_stop="94770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTCCCAGACAACAGACACCGAAGAGAAACGTGAGTCGTCTTTATCTCTCTCTTCTCTGGTTCACGGAGAAAACAGTTTTTGGGAACTAAAAATTGTCCAAAACTGAAGCTTCTTCTCGCAAACTTATGACTGTAAATCACAGAAAACTATGTCCATTTCCTCTCGATTTTCAGTTCGTAGGAAATTGCATTAACAATTTTATTAGTACTAGTCTGTGTCGTTACCCAAAAAACTGGATTTTAAGTGATTTCAGTAGAAAAACTTGTACATTCGCATAAATCGAGTGTTTCGTGTGAATATATGCATAGAGATATGTGCAGTTTTTTATTTCTTCAATTTTTTTTTGTTGTTGTGTAAATGGTGAATTGAATTCTGTCATAGGTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAGGTAATGTTTGTTGCAATTTTGATGGAGTACTATTGAAAATGTGTCAATTCCTTTCCATTTTATTAGTAACTTTTTTTTTTTTCGTGAAGAAAAAGCGAATAGGTAAATAGAATCATAGACTATTTCTGATATGTAGTTGACTCATTCTTTTGGGATTCCTCCGCAGCTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATC------TGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGA</genome_strand>
        <mrna_strand>GGAGCTCCCAGACAACAGACACCGAGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................GTTTAGCTT-G---G-AAGGAATGCTGAAAGGACTACGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG......................................................................................................................................................................CTGAAATTCTGATAGCTGCACTTCTATTACAACGGGATCTGTTGGAAGCAGTCCTTTTGGGTGCATTCTGATTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAACTATGCATAACGGATGTTTTAAAGAAGTCTATATTAAGTCGGCAATGTTGTTCTCCCCGAGTTTTACTTAATGAATTCAACCTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGA-TTTTTTGTT-AAAGTTTTGAGCGAGTTGCTGTTGTTATAGTGGTCATCCTGCTGATCTGGAGATGTGCTTCTTATTGAATTGAAATTTAGAGAGAG-TT-GAGGGAATAATCTAGGATTTACATATGGCTTCATTGGACCATTTTGGGGATGTTGCAAATATCGCACAGCTTACTGGAATAGATGCGGTGAGGCTAATTGGGATGATTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450630" ref_strand="+" ref_description="SGN-E450630 [cSTS-9-N18]">
      <seq>ggagctcccagacaacagacaccgaggagaaacgtttagcttggaaggaatgctgaaaggactacgggattgcggtggagtacagtgaggttaacggcgtcaccgttaattcagctgaaattctgatagctgcacttctattacaacgggatctgttggaagcagtccttttgggtgcattctgattacatatgatgcttttgagtgtattttgatggtactgcatgtctgcgacattgactggaacttgaatctgatgaactatgcataacggatgttttaaagaagtctatattaagtcggcaatgttgttctccccgagttttacttaatgaattcaacctgcttgattaaaagagctggtggagacagcttgattttttgttaaagttttgagcgagttgctgttgttatagtggtcatcctgctgatctggagatgtgcttcttattgaattgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="96176" stop="94594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95876" g_stop="95844" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95491" g_stop="95406" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="114" r_length="81" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95239" g_stop="94918" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="434" r_length="320" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E450630" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95876" e_stop="95844"/>
          <exon e_start="95491" e_stop="95406"/>
          <exon e_start="95239" e_stop="94918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTCCCAGACAACAGACACCGAAGAGAAACGTGAGTCGTCTTTATCTCTCTCTTCTCTGGTTCACGGAGAAAACAGTTTTTGGGAACTAAAAATTGTCCAAAACTGAAGCTTCTTCTCGCAAACTTATGACTGTAAATCACAGAAAACTATGTCCATTTCCTCTCGATTTTCAGTTCGTAGGAAATTGCATTAACAATTTTATTAGTACTAGTCTGTGTCGTTACCCAAAAAACTGGATTTTAAGTGATTTCAGTAGAAAAACTTGTACATTCGCATAAATCGAGTGTTTCGTGTGAATATATGCATAGAGATATGTGCAGTTTTTTATTTCTTCAATTTTTTTTTGTTGTTGTGTAAATGGTGAATTGAATTCTGTCATAGGTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAGGTAATGTTTGTTGCAATTTTGATGGAGTACTATTGAAAATGTGTCAATTCCTTTCCATTTTATTAGTAACTTTTTTTTTTTTCGTGAAGAAAAAGCGAATAGGTAAATAGAATCATAGACTATTTCTGATATGTAGTTGACTCATTCTTTTGGGATTCCTCCGCAGCTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATCT</genome_strand>
        <mrna_strand>GGAGCTCCCAGACAACAGACACCGAGGAGAAAC................................................................................................................................................................................................................................................................................................................................................................GTTTAGCTT-G---G-AAGGAATGCTGAAAGGACTACGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG......................................................................................................................................................................CTGAAATTCTGATAGCTGCACTTCTATTACAACGGGATCTGTTGGAAGCAGTCCTTTTGGGTGCATTCTGATTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAACTATGCATAACGGATGTTTTAAAGAAGTCTATATTAAGTCGGCAATGTTGTTCTCCCCGAGTTTTACTTAATGAATTCAACCTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGA-TTTTTTGTT-AAAGTTTTGAGCGAGTTGCTGTTGTTATAGTGGTCATCCTGCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="105370" stop="106265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105670" g_stop="105991" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105670" e_stop="105991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="105370" stop="106265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105670" g_stop="105975" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105670" e_stop="105975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="105371" stop="106416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105671" g_stop="106116" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105671" e_stop="106116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCAAGAATGGAGAGTGGTGAGCGAGATTTT-GGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427468" ref_strand="+" ref_description="SGN-E427468 [STM-48-D15]">
      <seq>cacaaatactatgagctatatatgcgcgcatttgatgaattgaggaaattagagatcttcttcagggaggagacaaatcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaacattttgcccagattgtatctcctttgtacagtgggttcagtgtacattaaatcaaaggaggctcctgccaaggatatactcaaagatctggtggaaatgtgccgtagcatacaacatccattacgtgggctcttcctaaggagttacctttcacaagtcagtagggataaattgcctgatataggatctgaatatgaaggggatgctgacactgtcatggatgcagtagaattcgtgctccaaaatttcacagaaatgaacaaactttgggtgcgaatgcaacatcagggacatgcacgggaaaaggaaaaacgtgaaaaagaaaggagcgagcttcgcgatcttgtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="113042" stop="116160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113233" g_stop="113251" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113252" i_stop="113350" i_length="99">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113351" g_stop="113474" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="143" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115371" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="329" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115372" i_stop="115515" i_length="144">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115516" g_stop="115603" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="417" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115604" i_stop="115801" i_length="198">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115802" g_stop="115858" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="474" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115859" i_stop="115956" i_length="98">
            <donor d_prob="0.267" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115957" g_stop="115963" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="481" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E427468" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113233" e_stop="113251"/>
          <exon e_start="113351" e_stop="113474"/>
          <exon e_start="115186" e_stop="115371"/>
          <exon e_start="115516" e_stop="115603"/>
          <exon e_start="115802" e_stop="115858"/>
          <exon e_start="115957" e_stop="115963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGTTATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAACTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAACCTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTGAAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACATATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTCATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAACTTGTAGTCTTAATATAAATATTTAATCTGCTAACACCATAGATTTAGAACCAGATTGGGTTAGTCAATTGGGTTTAACCTACATGGGTCAAGGAAGAAGCTACCAGTTGGACGTTTCAGTCCTCACAACTCTGAGTATCATTAGGCTAGCTGGAAAACCAAATTCCACAAACAACACTTCCACATTTTAAGCAAAGATGTAACTACTTTTGACTAAATCTCATAAGGTGTTCACCACGAGGAGGACCTGGTCGAGTAATGACTTCACCACAACTTGGGAAGCAAGAGACATTGGTCTTACTACCAATCACATGATTGTATTCTGGTCCATTTGACTCGTAACACTAAAGTGCTTTTGACCTTCTGGTTGTTTTCTTTTAAACTGTTCACTGACATCTGTCTCTATGTTTTGTTTAGCACTAAAGTTGACTGCAAGTTTCACTGCCCTAGCATCTCAGGAACTGAGAATCTGCTTGAAGTTGCATTTAGAGTATTTCTAACTGGAAAACGTCCATTATATATATGTGAATTTTTAGGAAAGCAAGCATATGGTAATTAGCAATAGGCCAGTATCTTTTCACAAAGTAAACTTAGCAAATCTTTTGTGAATTGGTGATTGCTTTTCATACTGGGAAGAATTCGTAGGTATTATGCTTGCTTTGCAGTACTTATAGATAGCAACTGGAACAGGAGGTTGTCACAAGTATAGCTGAAGATCTCAAGTTTCCTGTCCAGGGACGCTGAGATACTGTCCCAAATTTGGGTCATACATTTTCTTTTCTTGATAAAGTAACATTTTGTTGATATCCTGGGGGAATGAAACCTTGTTCCACGTAGTATACCAAAAAGTAGGGAACCTATATCATTACTAGTATAATAGGACTGATTGCATTCAAGATGATGATACAAAATAGTGGAATGCTTATAAGGACACTTGATACCTTTGTACCTTTACTTTTCGGTTACGTACCTTGAATATAACGAAATGCTAATACTGTTATATGGAACTTGATTTCATTATTCCTGTTATCTTGAGTTAAGAGAATTGAAATGCACTCAGATTGGTGTTTACTAGTATACAAGTCACTGGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTGGATCAAGAACCATGAGGTCTCGGGTTCAAATCCCAGAAAGACAAAAAACTAGGTGATTTATTTCTAGCCTTGGTGGACAAACTCCGGTACCTATCGTGGGTGGTAGGTAGCAACTATCCGCGGAATTAGTCAAGATGGGCGCAAGCTGCCCGAATACCACAGTTATCAAGAATAAAAGTATAGAAGGCACTGGTTGCCTTCTTAATCTTATGCTAATTCTGTTCTTATATCATTTGCATGTCTGTATTCAGGTTTTCATACCTGCTTTTTCTTCCTTAGGTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGGGTAAGGGCATCACCAAGCTGCTTTATCATTGGCTTTAATTATTAGATGGGTCACTTAGCAATGGTCAAGTTGCAAAAGGCGCTCCGTAAAAAAATTCACAAAATGAACATTTAGTTGGATACCCCTGACATGCTGTATCCACAGGGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCAGGTTGGTTCAAATGTCTGTGAATGCTGTAATTTCTCTCATACTTTGACATGAATAATGCCACAACGCCTGCATGTCATGAAGGTAAAAGAAAATTATGAAGGGATACTTTGTGGTCATGCAGGTGTTTTAATGCTTCTGAATGATAATACTCTTTGCTGATCATGAGTTGAGGGTTGCATCGGGCTTTCTGGTCTGCAGGGACATGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTTCGCGATCTTGTAATGAGCTGTAATTTAAGCATCATTACTAGCAACTGAACTTAGCAACGGATGTGCGCACTTATGTGAGGATTTCGTTTTGCTCTTATATTTGGTAGGTGGGGA</genome_strand>
        <mrna_strand>CACAAATACTATGAGCTAT...................................................................................................ATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGGGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCCAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATACTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGGCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGG................................................................................................................................................GGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCAG......................................................................................................................................................................................................GGACATGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTTCGCGATCTT..................................................................................................GTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487050" ref_strand="+" ref_description="SGN-E487050 [cSTE-24-G7]">
      <seq>cacaaatactatgagctatatatgcgcgcatttgatgaattgaggaaattagagatcttcttcagggaggagacaaatcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaacattttgcccagattgtatctcctttgtacagtgggttcagtgtacattaaatcaaaggaggctcctgccaaggatatactcaaagatctggtggaaatgtgccgtaccatacaacatccattacgtgggctcttcctaaggagttacctttcacaagtcagtaaggataaattgcctgatataggatctgaatatgaaggggatgctgacactggcatggatgcagtagaattcgtgctcccaaatttcacagaaatgaacaaactttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="113042" stop="115887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113233" g_stop="113251" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113252" i_stop="113350" i_length="99">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113351" g_stop="113474" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="143" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115371" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="329" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115372" i_stop="115515" i_length="144">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115516" g_stop="115587" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="401" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E487050" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113233" e_stop="113251"/>
          <exon e_start="113351" e_stop="113474"/>
          <exon e_start="115186" e_stop="115371"/>
          <exon e_start="115516" e_stop="115587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGTTATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAACTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAACCTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTGAAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACATATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTCATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAACTTGTAGTCTTAATATAAATATTTAATCTGCTAACACCATAGATTTAGAACCAGATTGGGTTAGTCAATTGGGTTTAACCTACATGGGTCAAGGAAGAAGCTACCAGTTGGACGTTTCAGTCCTCACAACTCTGAGTATCATTAGGCTAGCTGGAAAACCAAATTCCACAAACAACACTTCCACATTTTAAGCAAAGATGTAACTACTTTTGACTAAATCTCATAAGGTGTTCACCACGAGGAGGACCTGGTCGAGTAATGACTTCACCACAACTTGGGAAGCAAGAGACATTGGTCTTACTACCAATCACATGATTGTATTCTGGTCCATTTGACTCGTAACACTAAAGTGCTTTTGACCTTCTGGTTGTTTTCTTTTAAACTGTTCACTGACATCTGTCTCTATGTTTTGTTTAGCACTAAAGTTGACTGCAAGTTTCACTGCCCTAGCATCTCAGGAACTGAGAATCTGCTTGAAGTTGCATTTAGAGTATTTCTAACTGGAAAACGTCCATTATATATATGTGAATTTTTAGGAAAGCAAGCATATGGTAATTAGCAATAGGCCAGTATCTTTTCACAAAGTAAACTTAGCAAATCTTTTGTGAATTGGTGATTGCTTTTCATACTGGGAAGAATTCGTAGGTATTATGCTTGCTTTGCAGTACTTATAGATAGCAACTGGAACAGGAGGTTGTCACAAGTATAGCTGAAGATCTCAAGTTTCCTGTCCAGGGACGCTGAGATACTGTCCCAAATTTGGGTCATACATTTTCTTTTCTTGATAAAGTAACATTTTGTTGATATCCTGGGGGAATGAAACCTTGTTCCACGTAGTATACCAAAAAGTAGGGAACCTATATCATTACTAGTATAATAGGACTGATTGCATTCAAGATGATGATACAAAATAGTGGAATGCTTATAAGGACACTTGATACCTTTGTACCTTTACTTTTCGGTTACGTACCTTGAATATAACGAAATGCTAATACTGTTATATGGAACTTGATTTCATTATTCCTGTTATCTTGAGTTAAGAGAATTGAAATGCACTCAGATTGGTGTTTACTAGTATACAAGTCACTGGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTGGATCAAGAACCATGAGGTCTCGGGTTCAAATCCCAGAAAGACAAAAAACTAGGTGATTTATTTCTAGCCTTGGTGGACAAACTCCGGTACCTATCGTGGGTGGTAGGTAGCAACTATCCGCGGAATTAGTCAAGATGGGCGCAAGCTGCCCGAATACCACAGTTATCAAGAATAAAAGTATAGAAGGCACTGGTTGCCTTCTTAATCTTATGCTAATTCTGTTCTTATATCATTTGCATGTCTGTATTCAGGTTTTCATACCTGCTTTTTCTTCCTTAGGTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGGGTAAGGGCATCACCAAGCTGCTTTATCATTGGCTTTAATTATTAGATGGGTCACTTAGCAATGGTCAAGTTGCAAAAGGCGCTCCGTAAAAAAATTCACAAAATGAACATTTAGTTGGATACCCCTGACATGCTGTATCCACAGGGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGT</genome_strand>
        <mrna_strand>CACAAATACTATGAGCTAT...................................................................................................ATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGGGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCCAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATACTCAAAGATCTGGTGGAAATGTGCCGTACCATACAACATCCATTACGTGGGCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAAGGATAAATTGCCTGATATAGGATCTGAATATGAAGG................................................................................................................................................GGATGCTGACACTGGCATGGATGCAGTAGAATTCGTGCTCCCAAATTTCACAGAAATGAACAAACTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262548" ref_strand="+" ref_description="SGN-E262548 [cLEG-63-C6]">
      <seq>ttcgaactatgctgctttaagtgcagaagttttacctgagttcttccaggttgaagctttcgcaaaacttaatagtgccataggcaaggtgatagaggctcaagaagacatgcctattgccggagtggtgacattgtattcatcccttttgacattttctcttcatgtccaccctgatcgccttgattatgtagatcagattctgggtgcatgtgtacagaaactttctggaaaaggaaagctcaaagacaacaaagcaacaaaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="116802" stop="118794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117102" g_stop="117129" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117130" i_stop="117205" i_length="76">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117206" g_stop="117265" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="88" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117266" i_stop="117919" i_length="654">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117920" g_stop="118036" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="205" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118037" i_stop="118304" i_length="268">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118305" g_stop="118494" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E262548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117102" e_stop="117129"/>
          <exon e_start="117206" e_stop="117265"/>
          <exon e_start="117920" e_stop="118036"/>
          <exon e_start="118305" e_stop="118494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACTATGCTGCTTTAAGTGCAGAAGTTAGTTACAAATTCAAACTTCTCTGGAATAAGAAATTTTTATGCCTTCCGGTTTCTGAATAATTTTTTCCTGCAGGTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAGGTAATTGAGATTAATATTCTTAAATATATTAAAACTGCTATATGGGTTCTGGAATGCTTTGAGAAGAAACTTTTTTTGTATCGTGGATTTTCTACCTCCACCTTATAGAAATTAGTGGATATTGCTTGAAGTTTAAGAATTTTAATAAGAGATACTTACTGACCAGCAACCATTGCATTCTCCCTTGTAGGAGATTCAGATAAATCTATGAAACAAGTATTTTCATAGCTTCGTAGCAGAAAGTTTCATTCAGAAAGATTATTGTTTGTCACGGTAAAGATTGATCATACTTTATTCATGACCAGATGATTTCTGATCTGTTCTCCATTTGGGATATTTGACCAGAAAGTGTTCCAAGACATTCTTGATTGTTTCATCTTTGCTTGAATAAAGAACAATACTGTTGCTTTCTGAAGGAATTATCTGGTTCTCATAAAACAAAAACTTAACATAAAGGCTGTTTGAAGTGCACAGTAAACCGATTCTTAAATCATATTAAATTACAGAATTGTTTTCCAAAGAAAAAAAAACTGAACTACACGACTTTGAAGTCATTGTACCAAGGTTTTTCCTACTGATCGTAATGAACTTTAGCTATGTATTTCTTTGATTATGATGATGCGCTCCATTATGCCTGTCTCTCTGTTGGTGCAGGTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTGGTAGGTTTCTCTCTTTCTCAATAACTAGTTGCTATAGGCTCTATGGTTTTACTTTTTGTGTTTTCCAAGTAAGTGTATCACACTTATTAGTCTGATGCTTTTTTTTGGATCCAAAGTGAATATGTGAAATTTATAATACGGTACACTAAAACAAGATATGTTGAAGTTGAAACTTTTCATCCTTTGAAATCTATGTCTATTTAGACGATTTTCTGGCCTGCCTGGTTCATGTGGAACCTGTAAAGATCACACTCTTATTCACTTGCAGGGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTT</genome_strand>
        <mrna_strand>TTCGAACTATGCTGCTTTAAGTGCAGAA............................................................................GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG............................................................................................................................................................................................................................................................................GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370145" ref_strand="+" ref_description="SGN-E370145 [TUS-28-A6]">
      <seq>aaactttctggaaaaggaaagctcaaagacaacaaagcaacaaaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttttagtacaaaatattttgaaaaataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagcactaattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaagagcagaattctgttgcgcagcttattcaaatgcttcacaatgatgatcctgaagagatgctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaaattcggactccaaagcacaggtgactgcaatacacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="118020" stop="121201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118320" g_stop="118544" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118545" i_stop="118627" i_length="83">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118628" g_stop="118693" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="291" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118694" i_stop="118813" i_length="120">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118814" g_stop="118903" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="381" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118904" i_stop="119809" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119810" g_stop="119899" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120171" g_stop="120260" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="561" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120532" g_stop="120600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="630" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120680" g_stop="120760" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="711" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="120869" g_stop="120901" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="744" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E370145" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118320" e_stop="118544"/>
          <exon e_start="118628" e_stop="118693"/>
          <exon e_start="118814" e_stop="118903"/>
          <exon e_start="119810" e_stop="119899"/>
          <exon e_start="120171" e_stop="120260"/>
          <exon e_start="120532" e_stop="120600"/>
          <exon e_start="120680" e_stop="120760"/>
          <exon e_start="120869" e_stop="120901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTTGATTCTAGATAATTTTGTGTACTTCAATTTATTGCTTACAAATGTTACCCATGTTTCTACGAATTACTGGTCTTATCAGGTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAGGTGGACTGGAAACTCTGTGCTTGCATAAAAGTTCCTTAGTTCTTTCTTATATTTTCCTTTCATCACATATTTAAAATTAGTTTGTGCTGTGCCTTAAATTCTTTATCCTCCAATTTTCAGCTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAGGTAATTATGATTTACTTTCTTTTGAATTACTTGTATACTCCTTTTATGGATTAATTACTAGCTCTTGCAAGAGAAGACAGTAATATTCCCTATTACCCTCTGAGTTTATCAGAGAGATAAATAGGAATGAGCTCTTGAGTTTTGACATTAGTTGCAACTTGTATGTGATGAATTGGATGTATGTATAATGATCTACTGTAGTGTTAAGTTTTCACTTTATTGTGAAGGAGGAAAAACAAAATAAGAAAATGATGAAAAGTCACTGCCAACACTAGGGAAGAACTTTAAGCTGATCATGATTTGCTAGTCTTATCTTTTCATTTGGGGGATAATTTTACAGAAATTAGAAAGAAAAAAGACGTCAAACACATAATAGTCTTGACTATGTGTCCCCGATTAGTCTGTATAGTAAACATATAAAAGTAAGTATAAAAAATAATTAAATAACAACATTGGCATTTCCATTTGATTAAAATTTCAAGGTAACATTATTAGAAGTGTGAATCTCCAGCATATCCTTAATGCTAAGGAATACAACAATTGCAGTTTCCAAAAAAAACAAAAAACAAATATATGAAGTGTGAATCAGTTGCTGTAACATGTGCTTTGTGTGTGAGCTATCTTCAGGACAGTATGCAAGGTCCATCTTTTGTGGACTCTGCAACTTCTCAGCCTTGTATCACAAACTGAGCTTGTAACCAAAGTGAACAGCTCCTGCCTCTTGGCTCTGGAGTTATCCCCATTTTCTTTTATATGATTGTTTTTGCTCAAGCAAAGCATGCATCTGGTGATAATGTTGTATGGTTTGTTTCTATGTGGCTACAGTGTTTGTTTTCGTAGTTGTATAAAAAAGGTGTTGTTTTCTTGCTTCAAGTTCATATAGTTTGCTATTTCATTGAATTGCAGATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTG</genome_strand>
        <mrna_strand>AAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG...................................................................................GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG........................................................................................................................CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAAATTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270784" ref_strand="+" ref_description="SGN-E270784 [cLEM-6-A15]">
      <seq>aaactttctggtaaaaggaaagctcaaagacaacaaagcaacaggaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttttagtacaaaatattttgaaaaataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagcactaattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaagagcagaattctgttgcgcagcttattcaaatgcttcacaatgatgatcctgaagagatgctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="118020" stop="120503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118320" g_stop="118544" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118545" i_stop="118627" i_length="83">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118628" g_stop="118693" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="293" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118694" i_stop="118813" i_length="120">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118814" g_stop="118903" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="383" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118904" i_stop="119809" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119810" g_stop="119899" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="473" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120171" g_stop="120203" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="506" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E270784" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118320" e_stop="118544"/>
          <exon e_start="118628" e_stop="118693"/>
          <exon e_start="118814" e_stop="118903"/>
          <exon e_start="119810" e_stop="119899"/>
          <exon e_start="120171" e_stop="120203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCTGG-AAAAGGAAAGCTCAAAGACAACAAAGCAACA-AAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTTGATTCTAGATAATTTTGTGTACTTCAATTTATTGCTTACAAATGTTACCCATGTTTCTACGAATTACTGGTCTTATCAGGTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAGGTGGACTGGAAACTCTGTGCTTGCATAAAAGTTCCTTAGTTCTTTCTTATATTTTCCTTTCATCACATATTTAAAATTAGTTTGTGCTGTGCCTTAAATTCTTTATCCTCCAATTTTCAGCTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAGGTAATTATGATTTACTTTCTTTTGAATTACTTGTATACTCCTTTTATGGATTAATTACTAGCTCTTGCAAGAGAAGACAGTAATATTCCCTATTACCCTCTGAGTTTATCAGAGAGATAAATAGGAATGAGCTCTTGAGTTTTGACATTAGTTGCAACTTGTATGTGATGAATTGGATGTATGTATAATGATCTACTGTAGTGTTAAGTTTTCACTTTATTGTGAAGGAGGAAAAACAAAATAAGAAAATGATGAAAAGTCACTGCCAACACTAGGGAAGAACTTTAAGCTGATCATGATTTGCTAGTCTTATCTTTTCATTTGGGGGATAATTTTACAGAAATTAGAAAGAAAAAAGACGTCAAACACATAATAGTCTTGACTATGTGTCCCCGATTAGTCTGTATAGTAAACATATAAAAGTAAGTATAAAAAATAATTAAATAACAACATTGGCATTTCCATTTGATTAAAATTTCAAGGTAACATTATTAGAAGTGTGAATCTCCAGCATATCCTTAATGCTAAGGAATACAACAATTGCAGTTTCCAAAAAAAACAAAAAACAAATATATGAAGTGTGAATCAGTTGCTGTAACATGTGCTTTGTGTGTGAGCTATCTTCAGGACAGTATGCAAGGTCCATCTTTTGTGGACTCTGCAACTTCTCAGCCTTGTATCACAAACTGAGCTTGTAACCAAAGTGAACAGCTCCTGCCTCTTGGCTCTGGAGTTATCCCCATTTTCTTTTATATGATTGTTTTTGCTCAAGCAAAGCATGCATCTGGTGATAATGTTGTATGGTTTGTTTCTATGTGGCTACAGTGTTTGTTTTCGTAGTTGTATAAAAAAGGTGTTGTTTTCTTGCTTCAAGTTCATATAGTTTGCTATTTCATTGAATTGCAGATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAAT</genome_strand>
        <mrna_strand>AAACTTTCTGGTAAAAGGAAAGCTCAAAGACAACAAAGCAACAGGAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG...................................................................................GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG........................................................................................................................CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252267" ref_strand="+" ref_description="SGN-E252267 [cLEG-12-O2]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="119534" stop="121722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119834" g_stop="119899" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120171" g_stop="120260" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120532" g_stop="120600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120680" g_stop="120760" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120869" g_stop="120976" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121066" g_stop="121169" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121306" g_stop="121419" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="632" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121511" g_stop="121516" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="638" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E252267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119834" e_stop="119899"/>
          <exon e_start="120171" e_stop="120260"/>
          <exon e_start="120532" e_stop="120600"/>
          <exon e_start="120680" e_stop="120760"/>
          <exon e_start="120869" e_stop="120976"/>
          <exon e_start="121066" e_stop="121169"/>
          <exon e_start="121306" e_stop="121419"/>
          <exon e_start="121511" e_stop="121516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCT</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375171" ref_strand="+" ref_description="SGN-E375171 [TUS-34-H15]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="119534" stop="121697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119834" g_stop="119899" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120171" g_stop="120260" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120532" g_stop="120600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120680" g_stop="120760" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120869" g_stop="120976" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121066" g_stop="121169" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121306" g_stop="121397" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="610" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E375171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119834" e_stop="119899"/>
          <exon e_start="120171" e_stop="120260"/>
          <exon e_start="120532" e_stop="120600"/>
          <exon e_start="120680" e_stop="120760"/>
          <exon e_start="120869" e_stop="120976"/>
          <exon e_start="121066" e_stop="121169"/>
          <exon e_start="121306" e_stop="121397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGC</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252598" ref_strand="+" ref_description="SGN-E252598 [cLEG-20-I4]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaagctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagccggcctttaagaattgcaaatgctgctcaacaaatgtccaatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="119534" stop="121670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119834" g_stop="119899" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120171" g_stop="120260" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120532" g_stop="120600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120680" g_stop="120760" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120869" g_stop="120976" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121066" g_stop="121169" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121306" g_stop="121370" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="584" r_length="66" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E252598" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119834" e_stop="119899"/>
          <exon e_start="120171" e_stop="120260"/>
          <exon e_start="120532" e_stop="120600"/>
          <exon e_start="120680" e_stop="120760"/>
          <exon e_start="120869" e_stop="120976"/>
          <exon e_start="121066" e_stop="121169"/>
          <exon e_start="121306" e_stop="121370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCC-TTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAA</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAA...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCCGGCCTTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599037" ref_strand="-" ref_description="SGN-E599037 [52015]">
      <seq>agaccttgtgtatgccttgtttcacatcttttcctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctatatttctttgagaaaggggtctcacagattaatgttgcctccgtccagagccttattgagctaatcacgaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagagcatttctcaaaggaattgtgttcttggtgtcacagaagcagaacatttttcttacaaagtacaaaattaattccttttcaacttgctctagagaaaaatgcatttgacaacggactagctgaagcagctgtaaagatgcatatatcctgaccacccctacgcggtatatcctaataaagattgtgattgttgtaacaattttctctccagctatgacttcgagtgcctgccactggtactttttttttttttttttggtggagggtaggttttcttttgaggtggaggagacgaggagtggggaggtagctcattaatatatagttcaaaaatgtgattatgacgagtaccggaatactttgtcctgcagttttgtataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="120802" stop="122413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121102" g_stop="121169" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121306" g_stop="121419" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="187" r_length="115" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121511" g_stop="122113" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="790" r_length="603" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E599037" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599037" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121102" e_stop="121169"/>
          <exon e_start="121306" e_stop="121419"/>
          <exon e_start="121511" e_stop="122113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGC-TGTGTATG-CTTGTT-CGCATCTTTT-CTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGC-AAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCAC-AACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAAT--AGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTAC-TTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAAC</genome_strand>
        <mrna_strand>AGACCTTGTGTATGCCTTGTTTCACATCTTTTCCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTATATTTCTTTGAGAAAGGGGTCTCACAGATTAATGTTGCCTCCGTCCAGAGCCTTATTGAGCTAATCACGAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGAGCATTTCTCAAAGGAATTGTGTTCTTGGTGTCACAGAAGCAGAACATTTTTCTTACAAAGTACAAAATTAATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCTGAAGCAGCTGTAAAGATGCATATATCCTGA-C-CACCCCTACGCGGT-ATATCCTAATAAAGATTGTGATTGTTGTAACAATTTTCTCTCCAGCTATGACTT-CGAGTGCCTGCCACTGGTACTTTTTTTTTTTTTTTTTGGTGGAGGGTAGGTTTTCTTTTGAGGTGGAGGAGACGAGGAGTGGGGAGGTAGCTCATTAATATATAGTTCAAAAATGTGATTATGACGAGTACCGGAATACTTTGTCCTGCAGTTTTGTATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609051" ref_strand="+" ref_description="SGN-E609051 [25051]">
      <seq>caacatcttcatcaagttgatcttttctctcaacttttaaaatcttatcattatcattcttctttaactattaatggcatccaggaggattcttaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttattctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctccaaaggtggctttcaggaccagagttttccatccaaatataaataataatggaaatatttgtttggacattcttaaggatcaatggagtcctgcactcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtatgaatcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaagaatttgtgacaaccactgatttattgctcacaagtcacaagcaatatatatatatatataatatgttcaggactgttgctctatgaaacctgagaattcagtgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123819" stop="81953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123519" g_stop="123436" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="143" r_length="83" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="271" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="376" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122654" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="527" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122653" i_stop="121935" i_length="719">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121934" g_stop="121919" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="543" r_length="16" r_score="0.750"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121918" i_stop="121857" i_length="62">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.038" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121856" g_stop="121816" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="584" r_length="41" r_score="0.537"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121815" i_stop="121578" i_length="238">
            <donor d_prob="0.943" d_score="0.54"/>
            <acceptor a_prob="0.458" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121577" g_stop="121543" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="619" r_length="35" r_score="0.486"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121542" i_stop="121294" i_length="249">
            <donor d_prob="0.531" d_score="0.00"/>
            <acceptor a_prob="0.138" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121293" g_stop="121279" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="634" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E609051" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123519" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122654"/>
          <exon e_start="121934" e_stop="121919"/>
          <exon e_start="121856" e_stop="121816"/>
          <exon e_start="121577" e_stop="121543"/>
          <exon e_start="121293" e_stop="121279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACCACTGAATAATCTTAAGGTCTTATAGAGAGAAATGTGTGTGATGTTTTTCTAGACGAAAATGTTCATATAGAAAAATATGTAAACAGAACTGATTGGTTCAAATGAATGACTTCCTTGGTTCCTTATGATATCATATTTTCCACCAAAAGATTGCTCCAATAACCATTAGAGCAATATCTGTTTAAAAGTTTTTGGTGGTCTGCGAAATGTGTTAAATGGGACAGAACATGTTATACAAAACTGAGGGACAAATTATTCTAGTACTCGTCATAATCACATTTCTGAACTACAAATTAATGAACTACTTCTCCACTCCTTGTCTCTTCCACCTCAAAAGAAAACCTACTCTCCACCAAAAAAAAAAAAAAAAGTAACAGTGGCAGGCACTCGGAAGTCATAGCTGGAGAGCAAATTGTTACAACAATAACAATCTTTATTAGGATATTACTGCGTAGGGGTGTGGTCAGTATATATGCATCTTTTCAGCTGCTTCTGCTAGTCCGTTGTCAAATGC-ATTTTTCTCTAGAGCAAGTTGAAAAGGAATCAATTTTGTACTTTGTAAGAAAAATGTGCTGCTTCTGTGACACCAAGAACGTAATTCCTTTGAGAAATGCTATTTGATTATGAGTTGATGGACTCGAATTTCTCCCCAACTGCACCACCTTTATCCTTCTGGAACTGGATGTATCGCAAGGTGCTTGCAAAGAAGGCATCTGCTGCAGGATCTGCTGTTGTATTTTCACTTTGCATTTCAGTTGTGATTAGCTCAATCAGGCTCTGGACGGAGGCAACAT-TAATTTGTGAGACCCCCTTCTCAAAGAAATACAGATACCTGTTATACAAACGAATCTCTTGTAAAATTGACTTCCAAAAGAACAGTAGTTGAGAAGGTAAAAAGAACAGGAATGAAGAGTTGGTTTTACTTGTTTAGAATTTCTATAAAGAGCAAGACAGATCCACTGCTGCCTCGGGTTGCATTGGACATTTGTTGAGCAGCATTTGCAATTCTTAAGGCCCGCTTTAAGCAAAGCAAAACCCTGAATCAATAGGGGAAATAAGTAACA</genome_strand>
        <mrna_strand>TCTT-TAACTATTAATGGCATCCAGGAGGATTCTTAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATTCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCAAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTCCATCCAAATATAAATAATAATGGAAATATTTGTTTGGACATTCTTAAGGATCAATGGAGTCCTGCACTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTATGAATCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTGACAACCA..............................................................CTGATT-TATTGCTCACAAGTCACAAGCAATATATATATATA..............................................................................................................................................................................................................................................TATAAT-ATGTTCAGGACTGTTGCTCTATGAAACCT.........................................................................................................................................................................................................................................................GAGAATTCAGTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370144" ref_strand="+" ref_description="SGN-E370144 [TUS-28-A6](-)">
      <seq>aagcggggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttacttttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccaaaaaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="121022" stop="122426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121322" g_stop="121419" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121511" g_stop="122125" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="714" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="734"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E370144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121322" e_stop="121419"/>
          <exon e_start="121511" e_stop="122125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGC-GGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCC</genome_strand>
        <mrna_strand>AAGCGGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613959" ref_strand="+" ref_description="SGN-E613959 [63740]">
      <seq>caaatgtccaatgcaacccagaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctatatttctttgagaaaggggtctcacagattaatgttgcctccgtccagagccttattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccatgttccagaatggataacaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagagcatttctcaagaggaattgtgttcttggtgtcacagaagcagaacatttctcttacaaagtacaaaattaattccttttcaacttgctctagagaaaaatgcatttgacaacggactagctgaagcagctgtaaagatgcatatatcctgaccacccctacgcggtatatcctaataaagattgtgattgttgtaacaattttctctccagctatgacttcgagtgcctgccactggtacttatcacgttttgtcggtggacgggtaggttttcttttgaggtggaggagacgaggagtggggaggtagctcattaactatatacgttcaacaaatgtgattatgacgagtaccggaatactttgtcctgcagtttgtataagacactgaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="121055" stop="122414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121355" g_stop="121419" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121511" g_stop="122113" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="673" r_length="607" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E613959" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121355" e_stop="121419"/>
          <exon e_start="121511" e_stop="122113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTCCAATGCAACCC-GAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCA-GTTCCAGAA-GGATAA-AGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAAT--AGCATTTCTCAA-AGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGA-GAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAA-TTTGTA-GTTC-AGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAAC</genome_strand>
        <mrna_strand>CAAATGTCCAATGCAACCCAGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTATATTTCTTTGAGAAAGGGGTCTCACAGATTAATGTTGCCTCCGTCCAGAGCCTTATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCATGTTCCAGAATGGATAACAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGAGCATTTCTCAAGAGGAATTGTGTTCTTGGTGTCACAGAAGCAGAACATTTCTCTTACAAAGTACAAAATTAATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCTGAAGCAGCTGTAAAGATGCATATATCCTGA-C-CACCCCTACGCGGT-ATATCCTAATAAAGATTGTGATTGTTGTAACAATTTTCTCTCCAGCTATGACTT-CGAGTGCCTGCCACTGGTAC-TTATCACGTTTTGTCGGTGGACGGGTAGGTTTTCTTTTGAGGTGGAGGAGACGAGGAGTGGGGAGGTAGCTCATTAACTATATACGTTCAACAAATGTGATTATGACGAGTACCGGAATACTTTGTCCTGCAG-TTTGTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375170" ref_strand="+" ref_description="SGN-E375170 [TUS-34-H15](-)">
      <seq>aaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttactttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccatttaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="121056" stop="122435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121356" g_stop="121419" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121511" g_stop="122134" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="687" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E375170" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121356" e_stop="121419"/>
          <exon e_start="121511" e_stop="122134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</genome_strand>
        <mrna_strand>AAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTAC-TTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736134" ref_strand="+" ref_description="SGN-E736134 [LC04CA02]">
      <seq>cgaatagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123766" stop="40793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123466" g_stop="123436" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="159" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="264" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122517" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="552" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122516" i_stop="122291" i_length="226">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122290" g_stop="122261" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="582" r_length="30" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E736134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123466" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122517"/>
          <exon e_start="122290" e_stop="122261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACCACTGAATAATCTTAAGGTCTTATAGAGAGAAATGTGTGTGATGTTTTTCTAGACGAAAATGTTCATATAGAAAAATATGTAA</genome_strand>
        <mrna_strand>CGAATAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTT..................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712225" ref_strand="+" ref_description="SGN-E712225 [FB04BA09]">
      <seq>cttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123845" stop="122208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123545" g_stop="123436" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="238" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="343" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122493" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="655" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E712225" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123545" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATT</genome_strand>
        <mrna_strand>CTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733112" ref_strand="+" ref_description="SGN-E733112 [LB04AA07]">
      <seq>cattatcttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123851" stop="122195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123551" g_stop="123436" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="244" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="349" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122495" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="659" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E733112" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123551" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAA</genome_strand>
        <mrna_strand>CATTATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708959" ref_strand="+" ref_description="SGN-E708959 [FA42BA04]">
      <seq>ctcattattaatggcatccaggagaattcaccttgagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggcgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccacatgatccactggttccagaaattgctcatatgtgcaagactgataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="123815" stop="122413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123515" g_stop="123436" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123350" g_stop="123223" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="208" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123153" g_stop="123049" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="313" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122804" g_stop="122713" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="405" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E708959" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123515" e_stop="123436"/>
          <exon e_start="123350" e_stop="123223"/>
          <exon e_start="123153" e_stop="123049"/>
          <exon e_start="122804" e_stop="122713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAAC</genome_strand>
        <mrna_strand>CTCATTATTAATGGCATCCAGGAGAATTCACCTTGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGCGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCACATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415530" ref_strand="-" ref_description="SGN-E415530 [STM-21-B13]">
      <seq>tttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccctggtgtcccaatagtgcttgttggaacaaaacttgatcttcgggatgataagcaattcttcatagaccatcctggtgctgtgccaattaccactgctcagggtgaggagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcattcgtctcagaggaagtaggaggaggtccatgttgtatgtctcagttaaaattactagtgatctcttgaattgtcaggtggcttggttttctgtaatgctgtgatctctaattgtttagtcacagcaccttgtcgtaggccactgtattgtgccctccctgttctgattttctttatgtattaatgacctaaagatccagttagaaaaaaaaaaggaaattttccaggcaatgtgccaccaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="127316" stop="121677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127016" g_stop="126959" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="122" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126030" g_stop="125966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="187" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125862" g_stop="125797" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="253" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125695" g_stop="125287" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="652" r_length="399" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125286" i_stop="124821" i_length="466">
            <donor d_prob="0.935" d_score="0.88"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124820" g_stop="124794" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="678" r_length="26" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E415530" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415530" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127016" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="125966"/>
          <exon e_start="125862" e_stop="125797"/>
          <exon e_start="125695" e_stop="125287"/>
          <exon e_start="124820" e_stop="124794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGT---AGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAATATATTACTATTTTCTTTCAAGTATCATTCTGCTCTTGCTTCTCCTTAAATTTTTCAGTTTCTTCCTTAAGTTCTTATTGTAAATGGTACGAGAAAGGGAAAAAAGATCGTTTGCTATGTTATGTATGGCAGTGTGCCTAAGGACATATCGGTTGAAGTAGATTCTGTTTATTTTCTTGGCCTGATCATGAAGCTACCTTTCTGCCTTTCATTTGATTTTCTATTTTTCTATGTTAGAAGGGCAAAGGAATATAAGTTTGTGAAGTTGTAAAAATTCCAAAAGGATACGATACCAGAATTAATTCGAGGTGATCCACTACTTGCATAATATGGTCGTGGACAACAAATACGTTAGTTGACCAAAATCCTATGATATTGTCATTACATAATTTAAATGAAATAGGGAATGTTGACTCTACAAACATGGCAA</genome_strand>
        <mrna_strand>TTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCTGGTGTCCCAATAGTGCTTGTTGGAACAAAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCATAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAGGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTCGTCTCAGAGGAAGTAGGAGGAGGTCCATGTTGTATGTCTCAGTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTTGGTTTTC--TGTAAT-GCTGTGATCTCTAATTGTTTAGT--CACAGCACC-TTGTCGTAGGCCACTGTATTGTGCCCTCCCTGTTCTGATTTTC-TT-TATGTA--TTAATGACCTAAAGATCCAGTTAG---AAAAAAAAAAGGAAATTTTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATG-TGCCACCAAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369317" ref_strand="+" ref_description="SGN-E369317 [TUS-25-C22](-)">
      <seq>aaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgtagaccatcctggtgctgtgccaattaccactgctcagggtgaagagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttttgtgtaatggctgtgatctttaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttgtgatttgctttatatgtattttaatgacctgatgatccagttagaaaaaaaaaaaaaggaaattttcccggcaatgttgacaacatatttctctgaacatattaaacgtttctttttagatattgcattcaagatatattactattttctttcaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="127275" stop="124900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126975" g_stop="126959" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="81" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126030" g_stop="125966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="146" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125862" g_stop="125797" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="212" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125695" g_stop="125203" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="706" r_length="494" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E369317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126975" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="125966"/>
          <exon e_start="125862" e_stop="125797"/>
          <exon e_start="125695" e_stop="125203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAA-ATATATTACTATTTTCTTTCAA</genome_strand>
        <mrna_strand>AAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTTTGTGTAATGGCTGTGATCTTTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTGTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAGATATATTACTATTTTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216696" ref_strand="+" ref_description="SGN-E216696 [cLEL-1-P8](-)">
      <seq>ctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttctgtgtaatggctgtgatctctaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttctgatttgctttaaatgtattttaatgacctgaaaaaccacctagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="125970" stop="124995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125670" g_stop="125295" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E216696" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125670" e_stop="125295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAA</genome_strand>
        <mrna_strand>CTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTAAATGTATTTTAATGACCTGAAAAACCACCTAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619754" ref_strand="+" ref_description="SGN-E619754 [70447]">
      <seq>ctgagttaccgtggagctgatgtttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaacttgatcttcgggatgataagcaattcttcatagaccatcctggtgctgtgccaattaccactgctcagggtgaggagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtagtccaatgttattactggtcacacttctccttgttacctctctctcgtattcctttgtcattcgtctcagagaagtaggaggtccatgttgtatgtctcagttaaaattactagtgatctcttgaattgtcaggtggcttggtttactgtaatgctgtgatctctaattgtttagtcacagcaccttgtcgtaggccactgtattgtgccctcctccctgttctgattttctttatgtattaatgacctaaagatccagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="127339" stop="125086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127039" g_stop="126959" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="144" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126030" g_stop="125966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="209" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125862" g_stop="125797" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125695" g_stop="125313" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="649" r_length="374" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E619754" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127039" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="125966"/>
          <exon e_start="125862" e_stop="125797"/>
          <exon e_start="125695" e_stop="125313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCT-CT--CTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAG</genome_strand>
        <mrna_strand>CTGAGTTACCGTGGAGCTGATG-TTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCATAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAGGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTA-GTCCAATGTTATTACTGGTCACACTTCTCCTTGTTACCTCTCTCTCGTATTCCTTTGTCATTCGTCTCAGA-GAAGTAGGAGGTCCATGTTGTATGTCTCAGTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTTGGTTTAC--TGTAAT-GCTGTGATCTCTAATTGTTTAGT--CACAGCACC-TTGTCGTAGGCCACTGTATTGTGCCCTCCTCCCTGTTCTGATTTTC-TT-TATGTA--TTAATGACCTAAAGATCCAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271092" ref_strand="+" ref_description="SGN-E271092 [cLEM-22-K13]">
      <seq>acggattatgtgccaactgtgtttgacaatttcagtgcaaatgtggttgtcaatggggctactgtcaacctaaggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttatcgtggagctgatgttttcattttggcattctctctcatcagtaaagccagttatgaaaatgtttccaagaagtggattcctgagttgaagcattacgcccctggtgtccctattgtgcttgttggaacaaaacttgatcttcgagatgataagcaattcttcatagaccatccaggtgccgtgccaattactactgctcagggtgaagagctgaggaaaacaattggtgcaccttcctacattgaatgtagttcaaaaacacaggagaatgtaaaaggagtatttgatgctgccattaaagttgtgctccagccacccaaggcaaagaaaaagaaagggaagtcccaaagggcctgctcaattttgtgatcaacagttggtccggggttattcctggtcacagttttcacacgttgtaatctgtcccctcatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="127579" stop="125280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="91" r_length="88" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127068" g_stop="126959" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="201" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="265" r_length="64" r_score="0.891"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126030" g_stop="125966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="330" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125862" g_stop="125797" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="396" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.920" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125695" g_stop="125567" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="525" r_length="129" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E271092" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="125966"/>
          <exon e_start="125862" e_stop="125797"/>
          <exon e_start="125695" e_stop="125567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTG</genome_strand>
        <mrna_strand>GATTATGTGCCAACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCTACTGTCAACCTAAGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTATCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATCAGTAAAGCCAGTTATGAAAATGTTTCCAAGAAG.................................................................................TGGATTCCTGAGTTGAAGCATTACGCCCCTGGTGTCCCTATTGTGCTTGTTGGAACAAAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGATGATAAGCAATTCTTCATAGACCATCCAGGTGCCGTGCCAATTACTACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTTCCTACATTGAATGTAGTTCAAAAACACAGGAG.....................................................................................................AATGTAAAAGGAGTATTTGATGCTGCCATTAAAGTTGTGCTCCAGCCACCCAAGGCAAAGAAAAAGAAAGGGAAGTCCCAAAGGGCCTGCTCAATTTTGTGATCAACAGTTGGTCCGGGGTTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710431" ref_strand="+" ref_description="SGN-E710431 [FA55BF07]">
      <seq>cttttctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128849" stop="125703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128549" g_stop="128039" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="598" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126959" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="708" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="772" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126030" g_stop="126003" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="800" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E710431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128549" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="126003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGT</genome_strand>
        <mrna_strand>CTTT-TCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706687" ref_strand="+" ref_description="SGN-E706687 [FA30CF04]">
      <seq>cattatttcccggctaaaacaaagggttacttataatactgactcagaatggaaaaaaatacagagatgaacacccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128938" stop="125706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128638" g_stop="128039" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="688" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126959" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="798" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126877" g_stop="126814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="862" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126030" g_stop="126006" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="887" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E706687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128638" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126959"/>
          <exon e_start="126877" e_stop="126814"/>
          <exon e_start="126030" e_stop="126006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTT</genome_strand>
        <mrna_strand>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369318" ref_strand="+" ref_description="SGN-E369318 [TUS-25-C22]">
      <seq>tgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctattaaaacgttgcccagaagtggattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128812" stop="126650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128512" g_stop="128039" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="562" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126959" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="672" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126877" g_stop="126868" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="682" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E369318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128512" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126959"/>
          <exon e_start="126877" e_stop="126868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTG</genome_strand>
        <mrna_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATTAAAACGTTGCCCAGAAG.................................................................................TGGATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560322" ref_strand="+" ref_description="SGN-E560322 [19957]">
      <seq>tcctttctctctctatcttaaactttctctttctagatctgggatccccaaatttctcctcattttctctttaccatttctcctattctcattttcattcaccttactccctttcccctcttctacaattctctctgaattttccctttcgtagaattagggttagggtttcaccaagagaacaaagataacaccattggcatgtctcggttttcttctctgctgggttttcatgccattctgaagaaacgactctgaaagtaattggagaggttagaagaaaaggaaacaagaagctccaagataccacattttaatcatttttttttaaaaaaattctggcatcaggtcttctcaagaagatctgaaaagaggagggttgttgttggttttctgaatagcccggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagtactgtcaatctagggttgtgggatactgctggacaggaggattacaataggttaaggacctctgagttaccgtggagctgatgtttccatttttggcattctctctcattagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128851" stop="126687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128551" g_stop="128039" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="597" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126987" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="681" r_length="84" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E560322" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128551" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCT-CTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAA-GACCTCTGAGTTACCGTGGAGCTGATGTTTTCA-TTTTGGCATTCTCTCTCATTAGTAA</genome_strand>
        <mrna_strand>TCCTTTCTCTCTCTATCTTAAACTTTCTCTTTCTAGATCTGGGATCCCCAAATTTCTCCTCATTTTCTCTTTACCATTTCTCCTATTCTCATTTTCATTCACCTTACTCCCTTTCCCCTCTTCTACAATTCTCTCTGAATTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAA-CAAAGATAACACCATTGGCATGTCTCGGTTTTCTTCTCTGCTGGGTTTTCATGCCATTCTGAAGAAACGACTCTGAAAGTAATTGGAGAGGTTAGAAGAAAAGGAAACAAGAAGCTCCAAGATACCACATTTTA-ATC--ATTTT-TTTTTAAAAAAATTCTGGCATCAGGTCTTCTCAAGAAGATCTGAAAAGAGGAGGGTTGTTGTTGGTTTTCTGAATAGCCCGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGTACTGTCAATCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGGACCTCTGAGTTACCGTGGAGCTGATGTTTCCATTTTTGGCATTCTCTCTCATTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415529" ref_strand="+" ref_description="SGN-E415529 [STM-21-B13]">
      <seq>atttattttcatcctttctctctctaccttaaactttctctttctagatctgggatccccaaatttctcctcattttctctttaccatttctcctattctcattttcattcaccttactccctttcccctcttctacaattctctctgaattttccctttcgtagaattagggttagggtttcaccaagagaacaaagataacaccattggcatgtctcggttttcttctctgctgggttttcatgccattctgaagaaacgactctgaaagtaattggagaggttagaagaaaaggaaacaagaagctccaagataccacattttaatcatttttttttaaaaaaaattctggcatcaggtcttctcaagaagatctgaaaagaggagggttgttgttggttttctgaatagcccggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagtactgtcaatctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128862" stop="126692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128562" g_stop="128039" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="609" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="126992" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="686" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E415529" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128562" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="126992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCT-CTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATT</genome_strand>
        <mrna_strand>ATTTATTTTCATCCTTTCTCTCTCTACCTTAAACTTTCTCTTTCTAGATCTGGGATCCCCAAATTTCTCCTCATTTTCTCTTTACCATTTCTCCTATTCTCATTTTCATTCACCTTACTCCCTTTCCCCTCTTCTACAATTCTCTCTGAATTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAA-CAAAGATAACACCATTGGCATGTCTCGGTTTTCTTCTCTGCTGGGTTTTCATGCCATTCTGAAGAAACGACTCTGAAAGTAATTGGAGAGGTTAGAAGAAAAGGAAACAAGAAGCTCCAAGATACCACATTTTA-ATCATTTTTT-TTTAAAAA-AAATTCTGGCATCAGGTCTTCTCAAGAAGATCTGAAAAGAGGAGGGTTGTTGTTGGTTTTCTGAATAGCCCGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGTACTGTCAATCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568502" ref_strand="+" ref_description="SGN-E568502 [12794]">
      <seq>cccaaatttctcctcattttctctttaccatttctccgtattctcattttcattcaccttactccctttcgcctcttctacaattctctctgaattttccctttcgtagaattagggttagggtttcaccaagagaacaaagataacaccattggcatgtctcggttttcttctctgctgggttttcatgccattctgaagaaacgactctgaaagtaattggagaggttagaagaaaaggaaacaagaagctccaagataccacattttaatcatttttttttaaaaaaaaattctggcatcaggtcttctcaagaagatctgaaaagaggagggttgttgttggttttctgaatagccccggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcactagcttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagtactgtcaatctagggttgtgggatactgctggacaggaggattacaatgaggttaaagacctctgagttaccggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128806" stop="126726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128505" g_stop="128039" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="555" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127068" g_stop="127030" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="596" r_length="41" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E568502" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128505" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
          <exon e_start="127068" e_stop="127030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTTCTCCTCATTTTCTCTTTACCATTTCT-C-TATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAG-CCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAAT-AGGTT-AAGACCTCTGAGTTACC</genome_strand>
        <mrna_strand>CCCAAATTTCTCCTCATTTTCTCTTTACCATTTCTCCGTATTCTCATTTTCATTCACCTTACTCCCTTTCGCCTCTTCTACAATTCTCTCTGAATTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAA-CAAAGATAACACCATTGGCATGTCTCGGTTTTCTTCTCTGCTGGGTTTTCATGCCATTCTGAAGAAACGACTCTGAAAGTAATTGGAGAGGTTAGAAGAAAAGGAAACAAGAAGCTCCAAGATACCACATTTTA-ATCATTTTTT-TTTAAAAAAAAATTCTGGCATCAGGTCTTCTCAAGAAGATCTGAAAAGAGGAGGGTTGTTGTTGGTTTTCTGAATAGCCCCGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCACTAGCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGTACTGTCAATCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATGAGGTTAAAGACCTCTGAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316140" ref_strand="+" ref_description="SGN-E316140 [cTOA-23-L14]">
      <seq>acccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128866" stop="126887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128566" g_stop="128039" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="616" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E316140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128566" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</genome_strand>
        <mrna_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343807" ref_strand="+" ref_description="SGN-E343807 [cTOF-12-M7]">
      <seq>tttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaaatgtggtcgtcaatgggaagcactgtcaacctaaggttgtggggatacctgctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128861" stop="126887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128561" g_stop="128039" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="615" r_length="92" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E343807" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128561" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGC-AAATGTGGTCGTCAATGGG-AGCACTGTCAACCTAGGGTTGT-GGGATA-CTGCTG</genome_strand>
        <mrna_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAAATGTGGTCGTCAATGGGAAGCACTGTCAACCTAAGGTTGTGGGGATACCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316054" ref_strand="+" ref_description="SGN-E316054 [cTOA-23-M20]">
      <seq>tttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtccgcgatggtgccgttggaaagacgagtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggacgtcaatgggagcactgtcaacctatggttgtgggatactgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128861" stop="126887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128561" g_stop="128039" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="611" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E316054" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128561" e_stop="128039"/>
          <exon e_start="127275" e_stop="127188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</genome_strand>
        <mrna_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCCGCGATGGTGCCGTTGGAAAGACGAGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGACGTCAATGGGAGCACTGTCAACCTATGGTTGTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316139" ref_strand="+" ref_description="SGN-E316139 [cTOA-23-L12]">
      <seq>acccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccnacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128866" stop="126916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128566" g_stop="128039" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127216" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="589" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E316139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128566" e_stop="128039"/>
          <exon e_start="127275" e_stop="127216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCC-ACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</genome_strand>
        <mrna_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCNACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247259" ref_strand="+" ref_description="SGN-E247259 [cLEF-46-L8]">
      <seq>tgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128812" stop="126916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128512" g_stop="128039" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127275" g_stop="127216" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="534" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E247259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128512" e_stop="128039"/>
          <exon e_start="127275" e_stop="127216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</genome_strand>
        <mrna_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268113" ref_strand="+" ref_description="SGN-E268113 [cLEI-15-M11]">
      <seq>tattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcanatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128859" stop="127757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128559" g_stop="128057" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E268113" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128559" e_stop="128057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACC</genome_strand>
        <mrna_strand>TATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCANATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437178" ref_strand="+" ref_description="SGN-E437178 [cSTA-2-P10]">
      <seq>cttaaactttctctttctagaactgggatccccaaatttctcctcattttctctttaccatttctcctattctcattttcattcaccttactccctttcccctcttctacaattctctctgaattttccctttcgtagaattagggttagggtttcaccaagagaacaaagaatacaccattggcatgtctcggttttcttctctgctgggttttcatgcccattctgaagaaaccactctgaaagtaattggagaggttagaagaaaaggaaacaagaagctccaagataccacattttaatcatttttttttaaaaaaaattctggcatcaggtcttctcaagaagatctgaaaagaggagggttgttgttggttttctgaatagcccggaaaaatgagtgcttcaaggtttatcaaatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="128835" stop="127808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128535" g_stop="128108" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E437178" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128535" e_stop="128108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCT-CTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAG-CCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTT</genome_strand>
        <mrna_strand>CTTAAACTTTCTCTTTCTAGAACTGGGATCCCCAAATTTCTCCTCATTTTCTCTTTACCATTTCTCCTATTCTCATTTTCATTCACCTTACTCCCTTTCCCCTCTTCTACAATTCTCTCTGAATTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAA-CAAAGAATACACCATTGGCATGTCTCGGTTTTCTTCTCTGCTGGGTTTTCATGCCCATTCTGAAGAAACCACTCTGAAAGTAATTGGAGAGGTTAGAAGAAAAGGAAACAAGAAGCTCCAAGATACCACATTTTA-ATC-ATTTTT-TTTTAAAAAAAATTCTGGCATCAGGTCTTCTCAAGAAGATCTGAAAAGAGGAGGGTTGTTGTTGGTTTTCTGAATAGCCCGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592147" ref_strand="-" ref_description="SGN-E592147 [45874]">
      <seq>attattagcaagggaccccactgcatttacctatgctattaagcgttcctgtgaaaacaaagcagagttgtttctcaagatgagaaggaaagcggaatgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatggacagtggcttcatggagaagcagttgctgctggcacggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgggtgcagaagatcttagaacaggcaaagctgccaacttcacctccagaaattatgactgtggagatgttcaagtccatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttggtaactgtgtctttaccggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtaacatagaagtaattgttcgacaaaaatacaagttctgaggatctgctaaaacccttatcatactctgaaaaggttggtcaaggttataggcaattctgtttccgcttggaggtatgcttatgccctccatgaaatacaagatgtctttttgctagttcttaccctttggttagtgtaatattatcttgagctttcaaatatttgtatacatcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagacccattatctgctaataatattcataatggatgagttgtctcttaaaaacaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131993" stop="40791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="135" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="198" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="342" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130695" g_stop="130227" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="811" r_length="469" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130226" i_stop="129705" i_length="522">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129704" g_stop="129681" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="835" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E592147" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130227"/>
          <exon e_start="129704" e_stop="129681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTT-TTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATT-TCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTATAACTGTTTATTCCACAAATGTGATAAAACCACATGTACTTGTATGTTTGGTCAAAAATGTTTACTTATTGCTCATACAGCTAACACAGCTACTTATAGAGGAAAGGGGGTCAGTCAGCTGGACACATGGAAATAAAATTGTTTGTGCAGGAATTTGCTACTTGGCCACTTCAATTAGACAATTGACTTTACTTTTTTATTAAAAAAAATTGGGAGGGGAAGGGGATATGGAAGAGAGATTACCATTGGAAAATTAAACGTGCACCAGTAAAGTGAGAGTTTAGATAACTATTATTAATATTCTTTCGTAAAAACTAACTTGACTTGAATTTAATGACTCACTCTTTTCAATTAATAACTCTATGTTGGGAATTCTTGTGAACCATTACGTAACCCCACTTTAAACAGCTGGAATTTAGCCACTAAATTAAGCAAACAAATCCACGAGAACATGGATGTAGTTGTTGCACCAAATTTTCATTCTAATATAGTTTGTACCTAACAAAAAACGATAAAACTTGT</genome_strand>
        <mrna_strand>GGACCCCACTGCATTTACCTATGCTATTAAGCGTTCCTGTGAAAACAAAGCAGA-GTTGTTTCTCAAGATGAGAAGGAAAGCGGAATGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGACAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGCACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTAGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAATTATGACTGTGGAGATGTTCAAGTCCATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGTAACTGTGTCTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAACATAGAAGTAATTGTTCGACAAAAATACAAGTTCTGAGGATCTGCTAAAACCCTTA-TCATACTCTGAAAAGGTTGGTCAAGGTTATAGGCAATTCTGTTTCCGCTTGGAGGTATGCTTATGCCCTCCATGAAATACAAGATGTCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTATCTTGAGCTTTCAAATATTTGTATACATCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGACCCATTATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTT-AAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376479" ref_strand="+" ref_description="SGN-E376479 [TUS-17-L17](-)">
      <seq>catgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaatatacttgctgatgcatcttatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131447" stop="129900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131147" g_stop="131082" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="210" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130695" g_stop="130193" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="713" r_length="503" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E376479" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131147" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTATAACTGTTTA</genome_strand>
        <mrna_strand>CATGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618809" ref_strand="+" ref_description="SGN-E618809 [69491]">
      <seq>aaggtatgcttatgccctccatgaaatacaagatgtctttttgctagttcttaccctttggttagtgtaatattatcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagacccattatctgctaataatattcataatggatgagttgtctcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="130739" stop="129922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130440" g_stop="130222" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E618809" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130440" e_stop="130222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATT-TCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATA</genome_strand>
        <mrna_strand>AAGGTATGCTTATGCCCTCCATGAAATACAAGATGTCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTATCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGACCCATTATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744510" ref_strand="+" ref_description="SGN-E744510 [GI|18654277]">
      <seq>atcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135568" stop="129927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135268" g_stop="134901" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132759" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="519" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="687" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="914" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1038" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1101" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1245" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130695" g_stop="130227" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1714" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E744510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135268" e_stop="134901"/>
          <exon e_start="132909" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</genome_strand>
        <mrna_strand>ATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294790" ref_strand="+" ref_description="SGN-E294790 [cLET-17-J23]">
      <seq>aaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="130827" stop="129922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130527" g_stop="130227" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E294790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130527" e_stop="130227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</genome_strand>
        <mrna_strand>AAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574760" ref_strand="-" ref_description="SGN-E574760 [34278]">
      <seq>gtgtttctcaagatgagaaggaaacggattgaggcaacttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatggacagtggctttcatggagaacagtttgctgctggcaccggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgggtgcagaagatcttagaacaggcaaagctgccaacttcacctccagaaattatgactgtggagatgttcaagtccatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttggtaactgtgtctttaccggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtaacatagaagtaattgttcgacaaaaatacaagttctgaggatctgctaaaacccttatcatactctgaaaaggttggtcaaggttataggcaattctgtttccgcttggaggtatgcttatgccctccatgaaatacaagatgtctttttgctagttcttaccctttggttagtgtaatattatcttgagctttcaaatatttgtatacatcatttctgtgtgtatttttccgctgtcaaatcttctttaataccttgtagcctaacagtggagacccattatctgctaataatattcataatggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131924" stop="129942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131625" g_stop="131558" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="130" r_length="65" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.81"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="274" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130695" g_stop="130242" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="731" r_length="457" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E574760" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574760" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131625" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGC-TTCATGGAGAAGCAG-TTGCTGCTGG-AACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTT-TTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATT-TCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTT-ATA-CTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAG</genome_strand>
        <mrna_strand>GTGTTTCTCAAGATGAGAAGGAAA-CGGATTGA-GGCAAC-TTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGACAGTGGCTTTCATGGAGAA-CAGTTTGCTGCTGGCACCG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTAGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAATTATGACTGTGGAGATGTTCAAGTCCATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGTAACTGTGTCTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAACATAGAAGTAATTGTTCGACAAAAATACAAGTTCTGAGGATCTGCTAAAACCCTTA-TCATACTCTGAAAAGGTTGGTCAAGGTTATAGGCAATTCTGTTTCCGCTTGGAGGTATGCTTATGCCCTCCATGAAATACAAGATGTCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTATCTTGAGCTTTCAAATATTTGTATACATCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTAATACCTTGTAGCCTAACAGTGGAGACCCATTATCTGCTAATAATATTCATAATGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421203" ref_strand="-" ref_description="SGN-E421203 [STM-32-O10]">
      <seq>tcatggagaagcagttgctgctggcacggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgcgtgcagaagatctttgaacaggcaaagctgccaacttcacctccagaaactatgactctggagatgttcaagtctatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttggtaactgcgtctttactggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtagcatagaagtaattgttcgacaaaaatacaagttctgaggatctgctaaaacccttatcatactctggaaaggttggtcaaggttataggcaattctgtttccgcttggcggtatgcttatgccctccatgaaatacaagatgtctttttgctagttcttaccctttggttagtgtaatattatcttgagctttcaaatatttgtatacatcatttctgtgtgtatttttccgctgtcaaatattctttatacttgtagcctaacagtggagacccattatctgctaataatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131409" stop="129953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131109" g_stop="131082" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="172" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130695" g_stop="130253" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="616" r_length="444" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E421203" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421203" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131109" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTT-ATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATT-TCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCA</genome_strand>
        <mrna_strand>TCATGGAGAAGCAGTTGCTGCTGGCACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGCGTGCAGAAGATCTTTGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAACTATGACTCTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGTAACTGCGTCTTTACTGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAGCATAGAAGTAATTGTTCGACAAAAATACAAGTTCTGAGGATCTGCTAAAACCCTTA-TCATACTCTGGAAAGGTTGGTCAAGGTTATAGGCAATTCTGTTTCCGCTTGGCGGTATGCTTATGCCCTCCATGAAATACAAGATGTCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTATCTTGAGCTTTCAAATATTTGTATACATCATTTCTGTGTGTATTTTTCCGCTGTCAAATATTCTTTATACTTGTAGCCTAACAGTGGAGACCCATTATCTGCTAATAATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280464" ref_strand="+" ref_description="SGN-E280464 [cLER-1-A13]">
      <seq>tagtctcgagtttttttttttttttttttaggctacaagtataaagaagatttgacagcggaaaaatacacacagaaatgctgtatacaaatatttgaaagctcaagaaatattacactaaccaaagggtaagaactagcaaaaaggcatcttgtatttcacagagggcataagcatacctccaagcgctaacagagctgcctacaaccttgaccaaccttttcagaattggactaatggttttagcagatcataaaacttgtatttttgtcgaacaattgcttctatgtaacaactccaattgcttaagatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="40791" stop="130877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130257" g_stop="130577" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E280464" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130257" e_stop="130577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTAGCAGATGATGGGGCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</genome_strand>
        <mrna_strand>TAGTCTC-G-AGTTTTTTTTTTTTTTTTTTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606105" ref_strand="+" ref_description="SGN-E606105 [22041]">
      <seq>tattattagcagataatgggtctccactgttaggctacaagtataaagaagatttgacagcggaaaaatacacacagaaatgctgtatacaaatatttgaaagctcaagataatattacactaaccaaagggtaagaactagcaaaaagacatcttgtatttcatggagggcataagcatacctccaagcggaaacagaattgcctataaccttaaccaaccttttcagagtatgacaagggtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="129957" stop="130803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130257" g_stop="130503" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E606105" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130257" e_stop="130503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTAGCAGATGATGGGGCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGA-AATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTA</genome_strand>
        <mrna_strand>TATTATTAGCAGATAATGGGTCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGATAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGACATCTTGTATTTCATGGAGGGCATAAGCATACCTCCAAGCGGAAACAGAATTGCCTATAACCTTAACCAACCTTTTCAGAGTATGAC-AAGGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704831" ref_strand="+" ref_description="SGN-E704831 [FA25BE11]">
      <seq>ctggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggatcgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132637" stop="130125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132337" g_stop="132136" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="326" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="533" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130695" g_stop="130425" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="804" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E704831" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132337" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCC</genome_strand>
        <mrna_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATCGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704925" ref_strand="+" ref_description="SGN-E704925 [FA25CF07]">
      <seq>ctggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggatcgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgttttctaccggcgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagttcaattccgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132637" stop="130127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132337" g_stop="132136" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="326" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="533" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130695" g_stop="130427" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="803" r_length="270" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E704925" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132337" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTT-TACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATG</genome_strand>
        <mrna_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATCGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTCTACCGGCGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTTCAATTCCGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401716" ref_strand="+" ref_description="SGN-E401716 [PPC-5-I1]">
      <seq>gagaagcagttgctgctggcacggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgggtgcagaagatcttagaacaggcaaagctgccaacttcacctccagaaattatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttgggaactgtgtctttaccggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtaacatagaagaaattgttcgacaaaaatacaagttctgaggatctgctaaaacccttgtcatactctgaaaagggtgggtaagggtataggcaattctgtttccgcttggagggatgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131224" stop="130127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131104" g_stop="131082" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="167" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130695" g_stop="130427" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="436" r_length="269" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E401716" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131104" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTT-TTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATG</genome_strand>
        <mrna_strand>GAGAAGCAGTTGCTGCTGGCACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTAGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAATTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGGAACTGTGTCTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAACATAGAAGAAATTGTTCGACAAAAATACAAGTTCTGAGGATCTGCTAAAACCCTT-GTCATACTCTGAAAAGGGTGGGTAAGGGTATAGGCAATTCTGTTTCCGCTTGGAGGGATGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577688" ref_strand="+" ref_description="SGN-E577688 [LE15BH02]">
      <seq>ttggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaatacaagttttatgatctgctaaaaccattagtccaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132604" stop="130183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132304" g_stop="132136" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="293" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="356" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="500" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130695" g_stop="130483" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="712" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E577688" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132304" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCT</genome_strand>
        <mrna_strand>TTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGAC-AAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421202" ref_strand="+" ref_description="SGN-E421202 [STM-32-O10]">
      <seq>ccactgcatttacctatgctattaagcgttcctgtgaaaacaaagcagaggttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatggacagtggcttcatggagaagcagttgctgctggcacggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgcgtgcagaagatctttgaacaggcaaagctgccaacttcacctccagaaactatgactctggagatgttcaagtctatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttggtaactgcgtctttactggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtagcatagaagtaattgttcgacaaaaatacaagttctgaggatctgctaaaaccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131976" stop="130193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131676" g_stop="131558" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="182" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130695" g_stop="130493" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="530" r_length="204" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E421202" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131676" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTT-TTATGATCTGCTAAAACCATTA</genome_strand>
        <mrna_strand>CCACTGCATTTACCTATGCTATTAAGCGTTCCTGTGAAAACAAAGCAGAGGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGACAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGCACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGCGTGCAGAAGATCTTTGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAACTATGACTCTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGTAACTGCGTCTTTACTGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAGCATAGAAGTAATTGTTCGACAAAAATACAAGTTCTGAGGATCTGCTAAAACCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612916" ref_strand="+" ref_description="SGN-E612916 [62684]">
      <seq>gttcctgtgaaaacaaagcagaggttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatggacagtggcttcatggagaagcagttgctgctggcacggtcatggctgttgacatgtcacgtcggcttggttggattgatgactcactggtacagcgggtgcagaagatcttagaacaggcaaagctgccaacttcacctccagaaattatgactgtggagatgttcaagtccatcatggctgttgataaaaaagtggcagatggcaagctaagacttatccttctaaatggttcacttggtaaactgtgtctttaccggtgattatgaccagaaggccctcgatgaaacactacgtgcattttccaaatcttaatcaactgtggttgtaacatagaagtaattgttcgacaaaaatacaagtttctgaggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="131949" stop="130206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131649" g_stop="131558" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="155" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130921" g_stop="130778" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="299" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82">
            <donor d_prob="0.775" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130695" g_stop="130503" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="492" r_length="193" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E612916" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131649" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130778"/>
          <exon e_start="130695" e_stop="130503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGT-AACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCT</genome_strand>
        <mrna_strand>GTTCCTGTGAAAACAAAGCAGAGGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGACAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGCACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGTCGGCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTAGAACAGGCAAAGCTGCCAACTTCACCTCCAGAAATTATGACTGTGGAGATGTTCAAGTCCATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGCAAGCTAAGACTTATCCTTCTAAATGGTTCACTTGGTAAACTGTGTCTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTACGTGCATTTTCCAAATCTTAATCAACTGTGGTTGTAACATAGAAGTAATTGTTCGACAAAAATACAAG-TTTCTGAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725968" ref_strand="+" ref_description="SGN-E725968 [LA08DE11]">
      <seq>gagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132842" stop="130562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132542" g_stop="132502" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="268" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="392" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="455" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130921" g_stop="130862" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="515" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E725968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132542" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGG</genome_strand>
        <mrna_strand>GAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331256" ref_strand="+" ref_description="SGN-E331256 [cTOD-6-D17]">
      <seq>ggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132897" stop="130572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132597" g_stop="132502" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="323" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="447" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131144" g_stop="131082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="510" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130921" g_stop="130872" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="560" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E331256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132597" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131082"/>
          <exon e_start="130921" e_stop="130872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACT</genome_strand>
        <mrna_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331105" ref_strand="+" ref_description="SGN-E331105 [cTOD-6-D5]">
      <seq>ggtggtggagatatatgtgacatgtgtggttatgccgccgcttcctaccttcgtggagtggattttattcaaatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgatcctgtgaaaacaaagcagatgttgtttctcaagatgagaaagaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132897" stop="130822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132597" g_stop="132502" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="323" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131681" g_stop="131558" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="447" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131144" g_stop="131122" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="470" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E331105" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132597" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131558"/>
          <exon e_start="131144" e_stop="131122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTA</genome_strand>
        <mrna_strand>GGTGGTGGAGATATATGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTGGATTTTATTCAAATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGATCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAAGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284151" ref_strand="+" ref_description="SGN-E284151 [cLER-13-L4]">
      <seq>gaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="133120" stop="131357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132820" g_stop="132759" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="230" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132362" g_stop="132136" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="457" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131681" g_stop="131657" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="482" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E284151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132820" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132136"/>
          <exon e_start="131681" e_stop="131657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCT</genome_strand>
        <mrna_strand>GAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469604" ref_strand="+" ref_description="SGN-E469604 [cSTB-12-N17]">
      <seq>gccagatggtgagcaatttaaaaacatggaaactcttatgaaagtttttgataaagccattgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggatatgccgccgcttcctatcttcgtggagttaattttattcagatccctaccactgttatggcacaggtagattcttcagttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaggtgataaaatatggactcattagagatgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="133086" stop="131880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132786" g_stop="132759" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="196" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132362" g_stop="132180" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="379" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E469604" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132786" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAG</genome_strand>
        <mrna_strand>GCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTTTTTGATAAAGCCATTGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGATATGCCGCCGCTTCCTATCTTCGTGGAGTTAATTTTATTCAGATCCCTACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCAGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAGGTGATAAAATATGGACTCATTAGAGATGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331108" ref_strand="+" ref_description="SGN-E331108 [cTOD-6-F1]">
      <seq>ggtggagttattggtgacatgtgttgttatgccgccgcttcctaccttcgtggagtggattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="132894" stop="131934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132594" g_stop="132502" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132362" g_stop="132234" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="222" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E331108" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132594" e_stop="132502"/>
          <exon e_start="132362" e_stop="132234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAA</genome_strand>
        <mrna_strand>GGTGGAGTTATTGGTGACATGTGTTGTTATGCCGCCGCTTCCTACCTTCGTGGAGTGGATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260878" ref_strand="+" ref_description="SGN-E260878 [cLEG-55-E20]">
      <seq>acaaatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttaactaacacgacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggatgcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135572" stop="131951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135272" g_stop="134901" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132759" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="524" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="692" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132362" g_stop="132251" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="804" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E260878" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135272" e_stop="134901"/>
          <exon e_start="132909" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTT-ACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATA</genome_strand>
        <mrna_strand>ACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTAACTAACACGACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGATGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725737" ref_strand="+" ref_description="SGN-E725737 [LA05CB05]">
      <seq>agcgagttcacaggctcctacagctgtgtgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacacgtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135305" stop="131968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135005" g_stop="134901" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132759" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="257" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132669" g_stop="132502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="425" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132362" g_stop="132268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="520" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E725737" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135005" e_stop="134901"/>
          <exon e_start="132909" e_stop="132759"/>
          <exon e_start="132669" e_stop="132502"/>
          <exon e_start="132362" e_stop="132268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGTTCACAGGCTCCTACAGTTGT-TGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGA</genome_strand>
        <mrna_strand>AGCGAGTTCACAGGCTCCTACAGCTGTGTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAC...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452103" ref_strand="+" ref_description="SGN-E452103 [cSTS-15-N1]">
      <seq>atccacaaatcgtcgacgccacaatttttccccttacctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcggcccaccaactccaccaatccagagcaattccacgtgacatccacgtgcgtttccctgcttctgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcagtcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtaatcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaaggcatattcatgggaagagagtccttgtagttactaacactacagttgcccctctatatcttgataaaactataagcactttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccattgaatcaaggctggatcgtcgttgtacattcgtcgctctcggtgggtggagttataggtgacatgtgtggatatgccgncgcttcctatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135576" stop="132246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135276" g_stop="134901" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132759" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="527" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132669" g_stop="132546" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="652" r_length="125" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E452103" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135276" e_stop="134901"/>
          <exon e_start="132909" e_stop="132759"/>
          <exon e_start="132669" e_stop="132546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGT-GGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTC</genome_strand>
        <mrna_strand>ATCCACAAATCGTCGACGCCACAATTTTTCCCCTTACCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGGCCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATCCACGTGCGTTTCCCTGCTTCTGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCAGTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTAATCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTCATGGGAAGAGAGTCCTTGTAGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCACTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATTGAATCAAGGCTGGATCGTCGTTGTACATTCGTCGCTCTCGGTGGGTGGAGTTATAGGTGACATGTGTGGATATGCCGNCGCTTCCTATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300364" ref_strand="+" ref_description="SGN-E300364 [cLEW-17-B16]">
      <seq>aatttttctccttccctccgccacaccaactttcatggcgtggtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135554" stop="132527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135254" g_stop="134901" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132909" g_stop="132827" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="437" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E300364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135254" e_stop="134901"/>
          <exon e_start="132909" e_stop="132827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGA</genome_strand>
        <mrna_strand>AATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTGGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208261" ref_strand="+" ref_description="SGN-E208261 [cLEC-37-B2]">
      <seq>aatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaagtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="-" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="135569" stop="134739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135269" g_stop="135039" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="-" ref_id="SGN-E208261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135269" e_stop="135039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTC</genome_strand>
        <mrna_strand>AATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAAGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449466" ref_strand="+" ref_description="SGN-E449466 [cSTS-6-H17]">
      <seq>ggcttttgaaaacaactatatccactggagaagttgcccatttgctgtctgcagttatgtatttggcttagttttgtctagggttcaataatctcagtctcttctcatcctcaccttaatcgtgcaaattccctgattttgaaactcttcaaagttcttggtattttgaaaaacaacattgataaccgttctagagttaatgaagaaagtcaagaggaatgtggccattgtaatttcgtcgtccgatgacgatgaagacttcttagtgaagtcgaatttcacccacacgaaatcgaaagcgaaatcggtatcggcgtcagttccgaggaggaaccctaaaagggctaaaacggcgatactttcggcatcatgtccacgcccatctaaagagggtagtgttttcgatgagatgaaacggttttgtgaggagtttgatgatgatttcacgggcatcaaggtcttcaaagcaacaatgacatgtggattgacaaacataagcctcatttcctggaagagcttgcagttcaaaagaagaaggttgaagaagtgaaaacatggtttgaagaaagacaaaaagctgcaatggatggtcttagtaatgttcttcttgttgctggaccttctggtgttggaaaaactgcaactatccatgctattgcttcgaatcttggtgtcaaaatatgggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="139881" stop="143328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140181" g_stop="140594" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140595" i_stop="141454" i_length="860">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141455" g_stop="141502" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="457" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141503" i_stop="141864" i_length="362">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141865" g_stop="141944" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="537" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141945" i_stop="142024" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142025" g_stop="142072" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="585" r_length="48" r_score="0.896"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142073" i_stop="142809" i_length="737">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142810" g_stop="142863" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="639" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142864" i_stop="142979" i_length="116">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142980" g_stop="143028" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="688" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E449466" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140181" e_stop="140594"/>
          <exon e_start="141455" e_stop="141502"/>
          <exon e_start="141865" e_stop="141944"/>
          <exon e_start="142025" e_stop="142072"/>
          <exon e_start="142810" e_stop="142863"/>
          <exon e_start="142980" e_stop="143028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTCGAAAACAAGTATTTCTACTGGAGAAGTTGCCCATTTGCTGTCTGAAGTTATGTATTTGGCTTAGTTTTTTCTAGGGTTCAATAATCTCAGTCTCGTATCAT-CTCACCTTAATCGTGCAAATTCTCTGATTTTGAAACTCTTCAAAGTTCTTGGTATTTTGAAAAACAACATTGATAATCGTTCCCGTGGTAATGAAGAAAGTCAAGAGGAATGTGGCCATTGTAATTTCGTCGTCTGATGACGATGAAGACTTCTCAGTCAAGTCGAATTTCACCCACACGAAATCGAAATCGAATTCGAAATCGGTATCGGCGTCAGTTCCGAGGAGGTACCCTAAAAGGGCTAAAACGGCGAAACTTTCGTTATCATGTCCACGCCCATCTAAAGAGGGTAGTGTTTTCGATGAGGTAATACATAGGACTCATTCGATTTAATTATAGTATTGTTTAGTAAATAGGGCTACTATTTCTCGCTGTGCTTTTCATTTGAGTGAACGTTAGTTGTATGAACGGGAAACCGAGTTTGGTCTTACCTGTAGTAGATGTTAAGTAGTGGCAGTTGGTGAGGGTGCATCCATTGCTTGCGGTTTGATCTGTGCAGATATTAGTTGAAAATTAATTATGGATTCCCTCATAAGTTATGTTGGGTTTAACACTCCCAATAAAACAGTAGATTAGTTTTGTGAAATTATTCTTCCTATGTGGAGATTGTTTCGCCAAAAAGCGAACATTGTATTACTTATGCAAAATTGTGTGCTGGAATATCTTTACTCATCAAGCCAATCAAATGGCCCTCCTTATCAAAATATATTAGCCTCAATCTATGGATGCTTAAGAAGGGCTCGGCACCTAGTTCACATGAGAGGAACAAACATAAATAGACTCAGCTGCTATGTTTAACAACCATAGAACAACCCCCCATCCCCCCCCCCACCCCCCCACCCAAATATCTTGTTTCACAGAAGTGAAAGAATGCATGTTAAGTAGAGAACTTATAGAGTGGATTACAAATATACCTTGAACCTATGCAAGATCAAATATAAAACTCCTTGGCTTTACTGAATATATTTATTTAACAGTTTTATTTAGTAACCTTGGGTGATGTTTGCTTTATGGATTAAGTTCTCATGTCTCGACTAAACTGATTTTGTTGGTGGTTCATTAGCTATATATTCTGTTGTTTCTGGGATACTCACTGCACTGTACTTTTTGCCTTTGAGTAACTCAGAATTCTAATGGCATATGCCATATGGTATAACTGATTGCAGATGAAACGGTTTTGTGAGGAGTTTGATGACGATTTCATGGGTATCAAGGTATCTGCTGGTATGCTAGTTTCAAAAGATTTGGTTTTAGTATTTATTTGTATTAATGTCAACAATGAACTGGTTTGGGGAGTCGGATATGGCTTTCACATGTTAAAATTTTGGAGCTGAACCATGACTCAGTATCATCTAACTATGCAAGGTTTTTTGACTTCATGTTGATAATTCAGTTGGCAAATGCTTATTGGTCTGCATTTACAGTGATTTACCCTTCAACTCCTCCTGATTTTGTGTTGTTTTGATTGCCAGCCCTGTCTTCTCCATCAACGCATATGTTTTAACAGTCCTCTGAACCTCTTCATCTTCAGTTAGTCATCATTGGCAAAATACTAAATTTTATGAAACTGAATCAGGTCGTCGAAGCAACAATGACATGTGGATCGACAAACATAAGCCTCATTTCCTGGAAGAGCTTGCAGTTCAAAAGAAGAAGGTAAAGAGCTGTATGTTTTCCTCATAAATTTTCTCAGATGTGAAGGTTTTAATGTTTGTTTCCTGTGCTTGATTTTGCAGGTCGAAGAAGTAAAAACATGGTTTGAAGAAAGGCTAAAAGCTGCAGTGGTACATAATTAAGAGTGTTTTAAAAGCCTTATAAGTTTCTTTATTTTCTTAGACTTCTAATATTCTGACAACACATGGTCATCAATCCTGGTTCAACCAAGTGAATATTGCATATCTACTTTCCGTTTCCCTAAAATCTTAAAGTTCACTGTTTCTTATTCTTCGGCAGTGTTCTTAGAATCGTTTTTATAATATTGGAAATAATTACTTTATTGTTGCTTTGCTGGGGAACCCTGTCTTGTAATGAAGGTTGAGTGGAGCATTAAGCATACATATACTCAGAATAAAGTCTCTTTTTCTTGTTTCCCTGTTTGCAATGTGTTGCCTGGAGATCCATAGGGGTGTGGGATATAATTGGGATTTTACAACAACTTATGGTCGCAGGTCTGTCTTGGTTACCATTCTTTGTTTTTGAGCAAATCGGTAATAAATTTTTGTGTCATAGTTTGCGCCAGCTTGATCCAAAAAAGTTTGCGCTTGCCCTGGTCATTGTTTAGATGTGTAAGTGGAAATGGTAATTAGTTATGGTGCTAAAATGAAAAAGTTTGATCCAGGAAATTGTTGTATCATAGTAGTATTGGTGACCTCTCCTGGTCTGACATTTAGCATCTGTAATTTTGAGGGTTTGGTCTTTTCAGGTGCACTTGTTTTTACAGTGCTTTTGACATGACAAGTGTTTTCTGCAATGTTCAGACTTAACATGGTCGGAATTAAGATTTTTCCTCTGCTGGTTGCAGGATGGTCATAGTAATGTTCTTCTCGTTGCTGGACCTTCTGGTGTTGGAAAAACTGTATGTCACTGTTTTCCTTTACTATTCTGAATCAGGAGTGCCATGTTTGAAACTTTTGTCTTGCTCCTTCAAGGACTGTAAAATTGCATGATCATTGGGTGCTTGTCATCTTCTAGGCAACTATCCATGCTATTGCTTCGAATCTTGGTGTCACAATATGGGAGT</genome_strand>
        <mrna_strand>GGCTTTTGAAAACAACTATATCCACTGGAGAAGTTGCCCATTTGCTGTCTGCAGTTATGTATTTGGCTTAGTTTTGTCTAGGGTTCAATAATCTCAGTCTCTTCTCATCCTCACCTTAATCGTGCAAATTCCCTGATTTTGAAACTCTTCAAAGTTCTTGGTATTTTGAAAAACAACATTGATAACCGTTCTAGAGTTAATGAAGAAAGTCAAGAGGAATGTGGCCATTGTAATTTCGTCGTCCGATGACGATGAAGACTTCTTAGTGAAGTCGAATTTCACCCACACGAAATCGAAA--G----CGAAATCGGTATCGGCGTCAGTTCCGAGGAGGAACCCTAAAAGGGCTAAAACGGCGATACTTTCGGCATCATGTCCACGCCCATCTAAAGAGGGTAGTGTTTTCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACGGTTTTGTGAGGAGTTTGATGATGATTTCACGGGCATCAAG..........................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAGCAACAATGACATGTGGATTGACAAACATAAGCCTCATTTCCTGGAAGAGCTTGCAGTTCAAAAGAAGAAG................................................................................GTTGAAGAAGTGAAAACATGGTTTGAAGAAAGACAAAAAGCTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCTTAGTAATGTTCTTCTTGTTGCTGGACCTTCTGGTGTTGGAAAAACT....................................................................................................................GCAACTATCCATGCTATTGCTTCGAATCTTGGTGTCAAAATATGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422978" ref_strand="+" ref_description="SGN-E422978 [STM-41-G8]">
      <seq>ggcttttgaaaacaactatatccactggagaagttgcccatttgctgtctgcagttatgtatttggcttagttttgtctagggttcaataatctcagtctcttctcatcctcaccttaatcgtgcaaattccctgattttgaaactcttcaaagttcttggtattttgaaaaacaacattgataaccgttctagagttaatgaagaaagtcaagaggaatgtggccattgtaatttcgtcgtccgatgacgatgaagacttcttagtgaagtcgaatttcacccacacgaaatcgaaagcgaaatcggtatcggcgtcagttccgaggaggaaccctaaaagggctaaaacggcgatactttcggcatcatgtccacgcccatctaaagagggtagtgttttcgatgagatgaaacggttttgtgaggagtttgatgatgatttcacgggcatcaaggtcttcaaagcaacaatgacatgtggattgacaaacataagcctcatttcctggaagagcttgcagttcaaaagaagaacgttgaagaagtgaaaacatggtttgaagaaagacaaaaagcttgcaatggatggtcttaataatgttcttcttgttgctggaccttctggtgttggaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="139881" stop="143163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140181" g_stop="140594" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140595" i_stop="141454" i_length="860">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141455" g_stop="141502" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="457" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141503" i_stop="141864" i_length="362">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141865" g_stop="141944" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="537" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141945" i_stop="142024" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142025" g_stop="142072" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="586" r_length="49" r_score="0.854"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142073" i_stop="142809" i_length="737">
            <donor d_prob="0.955" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142810" g_stop="142863" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="640" r_length="54" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E422978" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140181" e_stop="140594"/>
          <exon e_start="141455" e_stop="141502"/>
          <exon e_start="141865" e_stop="141944"/>
          <exon e_start="142025" e_stop="142072"/>
          <exon e_start="142810" e_stop="142863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTCGAAAACAAGTATTTCTACTGGAGAAGTTGCCCATTTGCTGTCTGAAGTTATGTATTTGGCTTAGTTTTTTCTAGGGTTCAATAATCTCAGTCTCGTATCAT-CTCACCTTAATCGTGCAAATTCTCTGATTTTGAAACTCTTCAAAGTTCTTGGTATTTTGAAAAACAACATTGATAATCGTTCCCGTGGTAATGAAGAAAGTCAAGAGGAATGTGGCCATTGTAATTTCGTCGTCTGATGACGATGAAGACTTCTCAGTCAAGTCGAATTTCACCCACACGAAATCGAAATCGAATTCGAAATCGGTATCGGCGTCAGTTCCGAGGAGGTACCCTAAAAGGGCTAAAACGGCGAAACTTTCGTTATCATGTCCACGCCCATCTAAAGAGGGTAGTGTTTTCGATGAGGTAATACATAGGACTCATTCGATTTAATTATAGTATTGTTTAGTAAATAGGGCTACTATTTCTCGCTGTGCTTTTCATTTGAGTGAACGTTAGTTGTATGAACGGGAAACCGAGTTTGGTCTTACCTGTAGTAGATGTTAAGTAGTGGCAGTTGGTGAGGGTGCATCCATTGCTTGCGGTTTGATCTGTGCAGATATTAGTTGAAAATTAATTATGGATTCCCTCATAAGTTATGTTGGGTTTAACACTCCCAATAAAACAGTAGATTAGTTTTGTGAAATTATTCTTCCTATGTGGAGATTGTTTCGCCAAAAAGCGAACATTGTATTACTTATGCAAAATTGTGTGCTGGAATATCTTTACTCATCAAGCCAATCAAATGGCCCTCCTTATCAAAATATATTAGCCTCAATCTATGGATGCTTAAGAAGGGCTCGGCACCTAGTTCACATGAGAGGAACAAACATAAATAGACTCAGCTGCTATGTTTAACAACCATAGAACAACCCCCCATCCCCCCCCCCACCCCCCCACCCAAATATCTTGTTTCACAGAAGTGAAAGAATGCATGTTAAGTAGAGAACTTATAGAGTGGATTACAAATATACCTTGAACCTATGCAAGATCAAATATAAAACTCCTTGGCTTTACTGAATATATTTATTTAACAGTTTTATTTAGTAACCTTGGGTGATGTTTGCTTTATGGATTAAGTTCTCATGTCTCGACTAAACTGATTTTGTTGGTGGTTCATTAGCTATATATTCTGTTGTTTCTGGGATACTCACTGCACTGTACTTTTTGCCTTTGAGTAACTCAGAATTCTAATGGCATATGCCATATGGTATAACTGATTGCAGATGAAACGGTTTTGTGAGGAGTTTGATGACGATTTCATGGGTATCAAGGTATCTGCTGGTATGCTAGTTTCAAAAGATTTGGTTTTAGTATTTATTTGTATTAATGTCAACAATGAACTGGTTTGGGGAGTCGGATATGGCTTTCACATGTTAAAATTTTGGAGCTGAACCATGACTCAGTATCATCTAACTATGCAAGGTTTTTTGACTTCATGTTGATAATTCAGTTGGCAAATGCTTATTGGTCTGCATTTACAGTGATTTACCCTTCAACTCCTCCTGATTTTGTGTTGTTTTGATTGCCAGCCCTGTCTTCTCCATCAACGCATATGTTTTAACAGTCCTCTGAACCTCTTCATCTTCAGTTAGTCATCATTGGCAAAATACTAAATTTTATGAAACTGAATCAGGTCGTCGAAGCAACAATGACATGTGGATCGACAAACATAAGCCTCATTTCCTGGAAGAGCTTGCAGTTCAAAAGAAGAAGGTAAAGAGCTGTATGTTTTCCTCATAAATTTTCTCAGATGTGAAGGTTTTAATGTTTGTTTCCTGTGCTTGATTTTGCAGGTCGAAGAAGTAAAAACATGGTTTGAAGAAAGGCTAAAAGC-TGCAGTGGTACATAATTAAGAGTGTTTTAAAAGCCTTATAAGTTTCTTTATTTTCTTAGACTTCTAATATTCTGACAACACATGGTCATCAATCCTGGTTCAACCAAGTGAATATTGCATATCTACTTTCCGTTTCCCTAAAATCTTAAAGTTCACTGTTTCTTATTCTTCGGCAGTGTTCTTAGAATCGTTTTTATAATATTGGAAATAATTACTTTATTGTTGCTTTGCTGGGGAACCCTGTCTTGTAATGAAGGTTGAGTGGAGCATTAAGCATACATATACTCAGAATAAAGTCTCTTTTTCTTGTTTCCCTGTTTGCAATGTGTTGCCTGGAGATCCATAGGGGTGTGGGATATAATTGGGATTTTACAACAACTTATGGTCGCAGGTCTGTCTTGGTTACCATTCTTTGTTTTTGAGCAAATCGGTAATAAATTTTTGTGTCATAGTTTGCGCCAGCTTGATCCAAAAAAGTTTGCGCTTGCCCTGGTCATTGTTTAGATGTGTAAGTGGAAATGGTAATTAGTTATGGTGCTAAAATGAAAAAGTTTGATCCAGGAAATTGTTGTATCATAGTAGTATTGGTGACCTCTCCTGGTCTGACATTTAGCATCTGTAATTTTGAGGGTTTGGTCTTTTCAGGTGCACTTGTTTTTACAGTGCTTTTGACATGACAAGTGTTTTCTGCAATGTTCAGACTTAACATGGTCGGAATTAAGATTTTTCCTCTGCTGGTTGCAGGATGGTCATAGTAATGTTCTTCTCGTTGCTGGACCTTCTGGTGTTGGAAAAACT</genome_strand>
        <mrna_strand>GGCTTTTGAAAACAACTATATCCACTGGAGAAGTTGCCCATTTGCTGTCTGCAGTTATGTATTTGGCTTAGTTTTGTCTAGGGTTCAATAATCTCAGTCTCTTCTCATCCTCACCTTAATCGTGCAAATTCCCTGATTTTGAAACTCTTCAAAGTTCTTGGTATTTTGAAAAACAACATTGATAACCGTTCTAGAGTTAATGAAGAAAGTCAAGAGGAATGTGGCCATTGTAATTTCGTCGTCCGATGACGATGAAGACTTCTTAGTGAAGTCGAATTTCACCCACACGAAATCGAAA--G----CGAAATCGGTATCGGCGTCAGTTCCGAGGAGGAACCCTAAAAGGGCTAAAACGGCGATACTTTCGGCATCATGTCCACGCCCATCTAAAGAGGGTAGTGTTTTCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACGGTTTTGTGAGGAGTTTGATGATGATTTCACGGGCATCAAG..........................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAGCAACAATGACATGTGGATTGACAAACATAAGCCTCATTTCCTGGAAGAGCTTGCAGTTCAAAAGAAGAAC................................................................................GTTGAAGAAGTGAAAACATGGTTTGAAGAAAGACAAAAAGCTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCTTAATAATGTTCTTCTTGTTGCTGGACCTTCTGGTGTTGGAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422979" ref_strand="-" ref_description="SGN-E422979 [STM-41-G8]">
      <seq>agtttggccagagcatttgcataattctaattcagggttaaaatacatgtcaaaactagatgagtttgaagtttttgttgagagggtgagaaagtatggattgacttctccaacgttgaagggatcacaggcttcagtcatactcttagttgatgatcttcctgtggtaaatgtaagagctgcatatggaaggcttcaaaggtgtttgaccctacttgtgcaattagtccgcattccaacagccatagtaatcaccaactatgacaaggatgactctgcagactttagcacacgctgctgggaagaactccttctatctcttcatagtgctggtgcttgtaaggtcaacttcaaccctgtcactgtcaattcaatcaaaaaaacacttacagctatatgcagaaaggagcagcgtgaagttggcgctgattcaattgacctaatagccaaactgtgggaggttgaacaatcatcacgtcgcaataagcgtcaaatgtttaatcagagggatgacttgccttatagcctaaccacatatagtcagatagttatggcaaccgagtttaggccttcccttaaatggcttggatgcagagcgtctgaaagtttccaagcagacgacatggttgaagaagactcggatagcacctgtttgcatgaggataagctggatttgtcagacgatgagatagaagattggtagtttgaagcagtatatgaatgtgtatcaatatatggtccatgcgggttctttttcacctgtaaattatgtacatggctgaaattatgtaaaatttttagaggaaacatacaactagtttatactaattgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030D08-aYt4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030D08.2" temp_strand="+" temp_description="C02HBa0030D08.2  AC215364.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030D08 sequenced_by:kribb upload_account_name:korea">
        <position start="142748" stop="147363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143048" g_stop="143082" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143083" i_stop="143189" i_length="107">
            <donor d_prob="0.674" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143190" g_stop="143497" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="343" r_length="308" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143498" i_stop="143855" i_length="358">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143856" g_stop="143963" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="451" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143964" i_stop="146094" i_length="2131">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146095" g_stop="146130" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="487" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146131" i_stop="146713" i_length="583">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.834" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146714" g_stop="147063" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="836" r_length="349" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030D08.2" gen_strand="+" ref_id="SGN-E422979" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030D08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="143048" e_stop="143082"/>
          <exon e_start="143190" e_stop="143497"/>
          <exon e_start="143856" e_stop="143963"/>
          <exon e_start="146095" e_stop="146130"/>
          <exon e_start="146714" e_stop="147063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGGCCAGAGCATTTGCATAATTCTAATTCAGGTACATATTCATGTGTTGGAAAATGGAGCTTCTTCAAGCTATCAAGTGCTCGTTCAGAAAAGTGGATTCATATTATCATTTCATTTTTTTTTTTAATGTTGATATAGGGTTAAAATACATGTCAAAGCTAGATGAGTTTGAAGGTTTTGTTGAGAGGGTGAGAAAGTATGGATTGACTTCTCCAACGTTGAAGGGATCACAGGCTTCAGTCATACTCTTAGTTGATGATCTTCCTGTGGTAAATGTAAGAGCTGCGTATGGAAGGCTTCAAAGGTGTTTGACCCTTCTTGTGCAATTTGTCCGCATTCCAACAGCTATAGTGATCACAAACTATGACAAGGATGTCTCTGCAGACTTTAGCACACGCTGCTGGGAAGAACTCCTTCTATCTCTTCATAGTGCTGGGGCTTGTAAGGTTGCGTTCCTTGATAGACTTACTTTGGATTTTGAATTCTTTTCATCTGCTTATCTTGAATCAAATGTCAAACATCCCCTATGAGTATGAAAACATGATAAATTAGCTTCCTTGGCTAATTTTAAGCAATTTGACCTGGAACATGCCAACACTATCCACGGCCTGCAGGCCGAAGGGTACAAAATAGTTCACTCTTGAAATCTGCATATTGAGTTAGAGGATCTTTTCTTGTCTTTGACAGTAAAACAGCAGGGAAGTTTATCATTTTTCAAAGGCAGGGGAAGAGGCGGTTATCCAACACTAGATTCTAAGTTACTAGAGTATGCCAACTTTTTTTACTTGAGTTCATGATTTTCAGGTCAACTTCAACCCTGTCACTGTCAATTCAATCAAGAAAACACTTACAGCTATATGCAGAAAGGAGCAGCTTGAAGTTGGCGCTGATTCGATTGATCTAATAGCCAAAGCTAGTGGAGGTGATATCAGACAGGCAATTAATTCTCTGCAGTATCTCTGTCTTAAACCACATAGAAGGCCTATTCTATCGTCAAAAGAAAGACTGGATAACACTAGTTGTTTGGATGATGTGCTTTGTTTGCCATTTGGAAAAGATGAAACACTCTCTCTATTCCATGCATTAGGCAAATTTCTACACAACAAAAGAGAAAGTGAGCACACAATTGCATCAGGTACATCTGACTTAACTTCATTCTCAGGATACAGTGAGTTGCAAGTGCTTACAGAACTTAGTAACTGTGTGCTTCCACACCTCTTCTCTAGCCACAAATTACTCCATCTTTGCTATTGATGGCAGTGGGGCAGGTTTAAGGCTATGCGGGGAGGGGGGGGGGGGGGGACGGGTTGAAGTGTTTTTTATTTAAAACTAATGAAGGGCGGGGCGGGTTGCGGGTATATGTGATTTTATGTGAGTGTATACTTAATTTTAATTTTTTACATGTTGTAAGAGTGATAGAACATTATTTATTAAGATAATTTCTTTAAAGCTACTAAAATATTCAAGACTGTAAATGAAAATGGTTCACTAAAAATAATTTAGTTTCTTACATGTTTTCCAATTGACCTCTAAAAATAAAGTTTTAAGTCACTATCCTATTAAATTAATACAGCTTAATGAAAAAATGAATTTATTTTTAGTATCAAGTCATAGGGAATGCATATCTTAGCATGTACTTGAATGGTCTAATCTTGCAATCTTGGTTTCTAATTTATGAGTCACAATATGCAATACTGTATCTTTGAAAAGTTTTTCAATTGCTAAATGTGGTTTCAGCACTTGTAGACACTACTCTAATAAAGTTGTTAAGCTGATTTCCTGAGATGTAATAATGAAATATTGTTTAAGAATGACTGATATGAGCATTGGTGATTGTCCAAGAAGTAGTCTCCCAAGTAATGGTAATTAGAAGAGTAGAAGATTAACATTTTTCACCTTGTGTAAATTACTGCCATAGGTATGAACTTACACGTTATATGTGAGGTTTTTTTAATTACAAAGCTACAGCTCTTCTTTAACCATGTGGAGTAAGATATGAGAGTTCTCTACCAAGTGAATTGAAAGGGAATAATTGAGAATACTGTCTTTGGCAAACCCTCTGATACAGACTCATTTTTTTTTTGCAGATAGAGACACATTCCTTCTGAAGGAAAAATTTGTCAGGTTTCCTCTTAAAATGGATGCTCCAGAAGTTATTCTTTGTCAAGCACATGGTCAAGCGACGACTCTTTCTGATTTTCTGCATGAAAATGGTACTTTTTCTTCTTAAGGCGGACGGGCTTTCCAACTAATCTGGTCTGTTCTTTGCTTGTTGCATTTCTTTTGGAATGAACTTAAATGGTGGCAATGCTGGACTCAGGGCTACTTTTTTCTTTTTGTTTTTAATTCAAGCACCTAAATCTGCCATTCTGTGACATAATGCTATTTCCATATCATATTCGACCTGCTTTATTTGTGGGCTATAACAAACAAATTAGATTCACCACAGGTCCCAATAGCTTTAACTTCTGCCTTTTTGGTGAATTTCACCGGCAAACTAAATGTTGGCAGAGCTTGTTTTTTTAAATATATTTTCCAGTTCCTTAGATTAGAGGAGAAATACTATTCTTTTGTTCAACTTGCATTCACTACCTAATGGATTGTGCATGAAATGGGGTTATTCAGACTTATAGCCATCATATCTGCACATAGAAATGTAAAGTATGTTGTTGTCTAACATTTATAGAATTTGTTGTTTGTCTTATTCAACTACTGATTTTCAATTTTGTTGCAGTTTTAGACTTTTTGAGTGAAGACGCAATAGATGATGCGTGGCTTGTGGCATCATACTTAAGCGATTCGGATTTTCTTCTGTCTTCACTTAGTGGACATTTATCTAGAGACTTTGGAGCTGAGAACATCATTCAGTCAGCTGCTGCTTCAGTTGCTTCCAGAGGAGTATTATTTGGGAATGCTCATCCAGTGCCTTCTAGGTATAAAAACATTACCTGGTTCGTTATGTTTTGTTTATATAAAGTACCTAAATATAATTTATTGCAAATTCCCGTGAGAAATCAGGTGGCATGCTATTCGACGTCCCAAACTATGGGAGGTTGAACAATCATCACGCCGCAATAAGGTAAGATTCTTCCTGTCCCGTTCTCTGCATTTTGGTCTTGATCTTGCTCAGATAGCTTCTTATAACATGGATTTATCTGAATCAAGTCCTGAACATAATGTTTCTCACTAAAGTAGTTGCTTAGGAAGCACTAGTGCACTACTATAATTTCCTAGTGATCCTTTAGTTGGTGGTGTAGGCGATTTAGTCCCCACATAAAACACAACATTATTCTTTTGTAATGTTTTGGTTGGTATTTTGTTTTCCTTGTAACTAATACATACTTATGCATGTGAGAACCTATATAACATTTTGTGGGATATAATGTAGAATAAGAATGTGGGTATTAGTAATACATGGATTAAGAACAATAAAATGACAAAAGTAATCCTCATATTAGTAAAACAGCCTCTTCTTTTTGTTTAAAAATGTAAACATATATTTTAAGCAATACACTGTAATTGTATCAAACTAAACATCCAACATGACAATAATCCCTATATTACTTAACTGCATTTTTTGTCTTTTTTTAAACCAAACAGCCTCATGTTGTCCACTGATTTTGGATTTTAATTTCATCCTAACTAAGTCGATGTGTTTGCAGCGTCAAATGTTTACTCATTGGGGTGACTTGTATAATAGCCTAACCACATCAAATCAGATAGTTATGGCAACCGAGATTAGGCCTTCCCTTAAATGGCTTGGATGCAGAGCATCTGAAAGTTTCCAAGCAGACGACATGGTTGAAGATGACTCGGATAGCACCTATTTGCACGAGAATAAGCTGGATTTGTCCGACGATGAGATAGAAGATTGGTAGTTTGAAGCAGTGTTTGAGCTTGTATCAACATATAGTCCATGTGGGCTCTTTTTCACTTGTAAATTATGTATATTGCTGAAATTCTGTAAATTTTTTAGGGGAAACAATACAACTAGTTTATACTCATTGAAGTA</genome_strand>
        <mrna_strand>AGTTTGGCCAGAGCATTTGCATAATTCTAATTCAG...........................................................................................................GGTTAAAATACATGTCAAAACTAGATGAGTTTGAAGTTTTTGTTGAGAGGGTGAGAAAGTATGGATTGACTTCTCCAACGTTGAAGGGATCACAGGCTTCAGTCATACTCTTAGTTGATGATCTTCCTGTGGTAAATGTAAGAGCTGCATATGGAAGGCTTCAAAGGTGTTTGACCCTACTTGTGCAATTAGTCCGCATTCCAACAGCCATAGTAATCACCAACTATGACAAGGATGACTCTGCAGACTTTAGCACACGCTGCTGGGAAGAACTCCTTCTATCTCTTCATAGTGCTGGTGCTTGTAAG......................................................................................................................................................................................................................................................................................................................................................................GTCAACTTCAACCCTGTCACTGTCAATTCAATCAAAAAAACACTTACAGCTATATGCAGAAAGGAGCAGCGTGAAGTTGGCGCTGATTCAATTGACCTAATAGCCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGGAGGTTGAACAATCATCACGTCGCAATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAAATGTTTAATCAGAGGGATGACTTGCCTTATAGCCTAACCACATATAGTCAGATAGTTATGGCAACCGAGTTTAGGCCTTCCCTTAAATGGCTTGGATGCAGAGCGTCTGAAAGTTTCCAAGCAGACGACATGGTTGAAGAAGACTCGGATAGCACCTGTTTGCATGAGGATAAGCTGGATTTGTCAGACGATGAGATAGAAGATTGGTAGTTTGAAGCAGTATATGAATGTGTATCAATATATGGTCCATGCGGGTTCTTTTTCACCTGTAAATTATGTACATGGCTGAAATTATGTAAAATTTTTAGAGGAAAC-ATACAACTAGTTTATACTAATTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>230</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12" PGL_stop="2726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="777" e_stop="1287"/>
            <exon e_start="2140" e_stop="2270"/>
            <exon e_start="2367" e_stop="2726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="777" e_stop="1287" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2140" e_stop="2270" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2367" e_stop="2726" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="777" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="780" stop="1227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="963" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1036" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1036" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1037" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1045" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2144" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2169" stop="2270"/>
              <exon start="2367" stop="2726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCATC</gDNA_template>
            <first_frame> Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S  I </first_frame>
            <second_frame>  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P   </second_frame>
            <third_frame>   S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1000" stop="1287"/>
                    <exon start="2140" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="753" e_stop="2270"/>
            <exon e_start="2367" e_stop="2726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="753" e_stop="2270" e_length="1518"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2367" e_stop="2726" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="753" stop="1509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="754" stop="1354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="780" stop="1227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1144" stop="1633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1166" stop="1833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1284" stop="1954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1893" stop="2270"/>
              <exon start="2367" stop="2712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2144" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2169" stop="2270"/>
              <exon start="2367" stop="2726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCATC</gDNA_template>
            <first_frame> V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S  I </first_frame>
            <second_frame>  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P   </second_frame>
            <third_frame>   F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1000" stop="1332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2086" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="730" e_stop="843"/>
            <exon e_start="1036" e_stop="1287"/>
            <exon e_start="2140" e_stop="2270"/>
            <exon e_start="2367" e_stop="2726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="730" e_stop="843" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.942">
            <gDNA_intron_boundary i_start="844" i_stop="1035" i_length="192"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1036" e_stop="1287" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="1288" i_stop="2139" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2140" e_stop="2270" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2367" e_stop="2726" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="730" stop="843"/>
              <exon start="1036" stop="1287"/>
              <exon start="2140" stop="2205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1036" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1036" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1037" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1045" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1287"/>
              <exon start="2140" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2144" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2169" stop="2270"/>
              <exon start="2367" stop="2726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCATC</gDNA_template>
            <first_frame> S  S  I  K  T  P  S  Q  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P   </first_frame>
            <second_frame>  Q  A  *  R  L  L  H  S  F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H  </second_frame>
            <third_frame>   K  H  K  D  S  F  T  V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T   : S  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="775" stop="843"/>
                    <exon start="1036" stop="1287"/>
                    <exon start="2140" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYQQFLQHSFLLFADSIVHIKPQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12" e_stop="405"/>
            <exon e_start="1036" e_stop="2270"/>
            <exon e_start="2367" e_stop="2726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12" e_stop="405" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.942">
            <gDNA_intron_boundary i_start="406" i_stop="1035" i_length="630"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1036" e_stop="2270" e_length="1235"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2271" i_stop="2366" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2367" e_stop="2726" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12" stop="405"/>
              <exon start="1036" stop="1442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1144" stop="1633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1166" stop="1833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1284" stop="1954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1893" stop="2270"/>
              <exon start="2367" stop="2712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2144" stop="2270"/>
              <exon start="2367" stop="2716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2169" stop="2270"/>
              <exon start="2367" stop="2726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCATC</gDNA_template>
            <first_frame> A  Y  A  T  L  R  *  N  Q  P  *  V  R  S  L  L  F  L  I  S  L  S  S  S  S  T  Q  S  M  H  Q  C  N  L  N  R  H  D  E  Y  R  N  C  T  R  *  E  F  *  P  *  K  L  R  M  *  L  S  R  I  S  H  S  N  I  T  S  *  I  V  G  L  F  Q  S  N  T  A  *  V  R  M  F  G  V  H  F  Y  D  F  I  S  V  T  A  Q  G  W  F  L  *  F  W  Q  D  V  L  T  T  Y  C  V  R  G  *  G  *  D  K  I  S  T  I  E  *  K  K  I  I  F  S   : A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S  I </first_frame>
            <second_frame>  L  T  L  L  C  V  K  I  N  H  E  C  D  L  Y  C  F  *  S  P  F  L  P  H  R  P  N  L  C  T  S  V  I  *  T  V  M  M  N  I  E  I  V  P  D  R  S  F  D  R  K  N  *  E  C  S  Y  Q  E  S  A  I  P  I  L  L  V  E  L  W  D  Y  F  N  L  T  P  R  K  *  E  C  L  V  F  I  S  M  I  S  F  Q  *  L  L  K  V  G  F  C  N  S  G  K  M  C  *  Q  L  T  V  *  E  D  E  D  K  I  R  S  R  Q  L  N  R  R  K  *  S  F  Q  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P   </second_frame>
            <third_frame>   L  R  Y  S  A  L  K  S  T  M  S  A  I  F  I  V  F  N  L  P  F  F  L  I  D  P  I  Y  A  P  V  *  S  E  P  S  *  *  I  *  K  L  Y  Q  I  G  V  L  T  V  K  I  E  N  V  V  I  K  N  Q  P  F  Q  Y  Y  *  L  N  C  G  I  I  S  I  *  H  R  V  S  K  N  V  W  C  S  F  L  *  F  H  F  S  D  C  S  R  L  V  F  V  I  L  A  R  C  A  D  N  L  L  C  E  R  M  R  I  R  *  D  L  D  N  *  I  E  E  N  N  L  F  S :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2086" stop="2270"/>
                    <exon start="2367" stop="2505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="397" stop="405"/>
                    <exon start="1036" stop="1332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4591" PGL_stop="8792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4591" e_stop="4905"/>
            <exon e_start="4997" e_stop="5084"/>
            <exon e_start="5511" e_stop="5608"/>
            <exon e_start="5736" e_stop="5833"/>
            <exon e_start="6945" e_stop="7074"/>
            <exon e_start="7156" e_stop="7866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4591" e_stop="4905" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4997" e_stop="5084" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5511" e_stop="5608" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5736" e_stop="5833" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6945" e_stop="7074" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="7156" e_stop="7866" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4591" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4623" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4627" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4635" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4644" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4658" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4683" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7239" stop="7866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7239" stop="7783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7331" stop="7782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTT</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W  *  V  I  C  I  Q  A  D  T  D  N  G  C  *  T  L  R  T  *  L  L  I  T  D  I  H  L  L  A  H  K  V  L  I  A  I  L  Y  S  G  V  M  S  N  V  Y  L  I  G  N  *  V  V  L  R  M  S  C  F  R  W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R  *  T  F  S  P  E  W  Y  L  I  H  K  K  Y  V  H  P  L  Q  F  S  Y  M  Y  T  T  C  F  I  C  *  Y  F  A  F  M  L  I  N  L  A  V  A  S  R  R  S  L  F  F  N  S  S  H  I  F  P  F  G  L  V  F  *  Y  *  S  L  R  P  I  S  L  V  L  S  P  *  N  K  Q  L  V  Y  F  F </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H  G  E  *  S  A  Y  K  Q  I  R  I  M  G  A  E  H  *  E  L  D  Y  *  L  L  T  S  I  F  *  L  T  K  F  *  L  L  Y  C  I  L  E  *  *  A  M  F  I  *  L  A  T  K  *  Y  Y  V  C  L  V  L  G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R  G  K  H  F  R  L  S  G  I  *  Y  T  K  N  M  C  T  L  C  S  F  L  I  C  T  Q  L  V  L  F  A  S  T  L  H  L  C  *  *  I  L  L  *  L  L  G  G  L  F  F  L  T  L  P  T  F  F  H  L  V  W  C  F  S  I  D  P  *  D  P  *  A  *  Y  *  V  L  E  I  N  N  *  C  I  F   </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  V  S  N  L  H  T  S  R  Y  G  *  W  V  L  N  I  E  N  L  I  I  D  Y  *  H  P  S  S  S  S  Q  S  F  N  C  Y  I  V  F  W  S  N  E  Q  C  L  F  D  W  Q  L  S  S  I  T  Y  V  L  F  *  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  V  N  I  F  A  *  V  V  F  N  T  Q  K  I  C  A  P  S  A  V  F  L  Y  V  H  N  L  F  Y  L  L  V  L  C  I  Y  V  D  K  S  C  C  S  F  S  A  V  S  F  F  *  L  F  P  H  F  S  I  W  F  G  V  L  V  L  I  L  E  T  H  K  L  S  T  K  S  L  K  *  T  I  S  V  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4712" stop="4905"/>
                    <exon start="4997" stop="5084"/>
                    <exon start="5511" stop="5608"/>
                    <exon start="5736" stop="5833"/>
                    <exon start="6945" stop="7074"/>
                    <exon start="7156" stop="7351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4591" e_stop="4905"/>
            <exon e_start="4997" e_stop="5084"/>
            <exon e_start="5511" e_stop="5608"/>
            <exon e_start="5736" e_stop="5833"/>
            <exon e_start="6945" e_stop="7074"/>
            <exon e_start="7156" e_stop="7343"/>
            <exon e_start="7524" e_stop="7610"/>
            <exon e_start="8143" e_stop="8344"/>
            <exon e_start="8773" e_stop="8792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.941"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4591" e_stop="4905" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4997" e_stop="5084" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5511" e_stop="5608" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5736" e_stop="5833" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5834" i_stop="6944" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6945" e_stop="7074" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="7156" e_stop="7343" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="7524" e_stop="7610" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="8143" e_stop="8344" e_length="202"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="8345" i_stop="8772" i_length="428"/>
          </intron>
          <exon e_serial="9" e_score="0.650">
            <gDNA_exon_boundary e_start="8773" e_stop="8792" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4591" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4623" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4627" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4635" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4644" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4658" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4683" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6945" stop="7074"/>
              <exon start="7156" stop="7343"/>
              <exon start="7524" stop="7610"/>
              <exon start="8143" stop="8344"/>
              <exon start="8773" stop="8792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7244" stop="7343"/>
              <exon start="7524" stop="7610"/>
              <exon start="8143" stop="8326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTC : GAAAAAATCCATTGAAAAGA</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K  M  *  E  A  S  F  :  E  K  I  H  *  K   </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *  R  C  E  K  L  H  S :   K  K  S  I  E  K  </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  D  V  R  S  F  I   : R  K  N  P  L  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4712" stop="4905"/>
                    <exon start="4997" stop="5084"/>
                    <exon start="5511" stop="5608"/>
                    <exon start="5736" stop="5833"/>
                    <exon start="6945" stop="7074"/>
                    <exon start="7156" stop="7343"/>
                    <exon start="7524" stop="7597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4591" e_stop="4905"/>
            <exon e_start="4997" e_stop="5084"/>
            <exon e_start="5511" e_stop="5608"/>
            <exon e_start="5736" e_stop="5833"/>
            <exon e_start="6972" e_stop="7074"/>
            <exon e_start="7156" e_stop="7343"/>
            <exon e_start="7524" e_stop="7610"/>
            <exon e_start="8143" e_stop="8326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="0.835"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4591" e_stop="4905" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4906" i_stop="4996" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4997" e_stop="5084" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5085" i_stop="5510" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5511" e_stop="5608" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="5609" i_stop="5735" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5736" e_stop="5833" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5834" i_stop="6971" i_length="1138"/>
          </intron>
          <exon e_serial="5" e_score="0.835">
            <gDNA_exon_boundary e_start="6972" e_stop="7074" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7075" i_stop="7155" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="7156" e_stop="7343" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="7344" i_stop="7523" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="7524" e_stop="7610" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7611" i_stop="8142" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="8143" e_stop="8326" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4591" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4658" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4683" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4717" stop="4905"/>
              <exon start="4997" stop="5084"/>
              <exon start="5511" stop="5608"/>
              <exon start="5736" stop="5833"/>
              <exon start="6972" stop="7074"/>
              <exon start="7156" stop="7343"/>
              <exon start="7524" stop="7534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7244" stop="7343"/>
              <exon start="7524" stop="7610"/>
              <exon start="8143" stop="8326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : ACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : D  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *   </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4712" stop="4905"/>
                    <exon start="4997" stop="5084"/>
                    <exon start="5511" stop="5608"/>
                    <exon start="5736" stop="5833"/>
                    <exon start="6972" stop="7074"/>
                    <exon start="7156" stop="7343"/>
                    <exon start="7524" stop="7597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVDYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16265" PGL_stop="18271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16265" e_stop="16586"/>
            <exon e_start="16958" e_stop="17136"/>
            <exon e_start="17279" e_stop="17362"/>
            <exon e_start="17442" e_stop="17609"/>
            <exon e_start="17707" e_stop="17957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16265" e_stop="16586" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16958" e_stop="17136" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17279" e_stop="17362" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17442" e_stop="17609" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17610" i_stop="17706" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17707" e_stop="17957" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16265" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16278" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16353" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16356" stop="16586"/>
              <exon start="16958" stop="17106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16557" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16557" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16558" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16558" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16567" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17609"/>
              <exon start="17707" stop="17957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG : GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</gDNA_template>
            <first_frame> T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  :  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R   </first_frame>
            <second_frame>  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R :   T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  </second_frame>
            <third_frame>   T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T   : G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16370" stop="16586"/>
                    <exon start="16958" stop="17136"/>
                    <exon start="17279" stop="17362"/>
                    <exon start="17442" stop="17609"/>
                    <exon start="17707" stop="17829"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQDFQRGETARCLPQCHHMFHLPCIDTWLLRHGSCPLCRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16265" e_stop="16586"/>
            <exon e_start="16958" e_stop="17136"/>
            <exon e_start="17279" e_stop="17362"/>
            <exon e_start="17442" e_stop="18020"/>
            <exon e_start="18267" e_stop="18271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.867" e_score="0.950"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16265" e_stop="16586" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16587" i_stop="16957" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16958" e_stop="17136" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17137" i_stop="17278" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17279" e_stop="17362" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17363" i_stop="17441" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="17442" e_stop="18020" e_length="579"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="18021" i_stop="18266" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="18267" e_stop="18271" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16265" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16278" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16356" stop="16586"/>
              <exon start="16958" stop="17106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16557" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16567" stop="16586"/>
              <exon start="16958" stop="17136"/>
              <exon start="17279" stop="17362"/>
              <exon start="17442" stop="17491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17290" stop="17362"/>
              <exon start="17442" stop="18020"/>
              <exon start="18267" stop="18271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17504" stop="17843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTCCTTTGAGCTTTGATCGTTGTAGTTGTTTACCACTATGTATAGAATTTTGAGCAATTTTAGTGT : ATAAG</gDNA_template>
            <first_frame> T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  V  R  H  I  Y  T  F  S  F  V  I  L  L  S  V  F  E  L  L  N  W  F  *  T  L  F  S  V  S  I  F  L  G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L  L  *  A  L  I  V  V  V  V  Y  H  Y  V  *  N  F  E  Q  F  *  C  :  I   </first_frame>
            <second_frame>  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R  *  D  T  F  I  H  F  L  L  L  F  Y  C  L  F  L  N  Y  L  I  G  S  E  R  C  S  R  F  L  S  F  *  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R  S  F  E  L  *  S  L  *  L  F  T  T  M  Y  R  I  L  S  N  F  S  V :   *  </second_frame>
            <third_frame>   T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T  G  K  T  H  L  Y  I  F  F  C  Y  S  I  V  C  F  *  I  T  *  L  V  L  N  A  V  L  G  F  Y  L  S  R  T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  P  L  S  F  D  R  C  S  C  L  P  L  C  I  E  F  *  A  I  L  V   : Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16370" stop="16586"/>
                    <exon start="16958" stop="17136"/>
                    <exon start="17279" stop="17362"/>
                    <exon start="17442" stop="17678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQVRHIYTFSFVILLSVFELLNWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19951" PGL_stop="21487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19951" e_stop="21487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="19951" e_stop="21487" e_length="1537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19951" stop="20791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19956" stop="20604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="20494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20187" stop="20927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20751" stop="21487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</gDNA_template>
            <first_frame> L  P  S  R  H  S  P  S  P  F  L  N  S  F  L  H  A  P  P  L  P  T  T  K  T  A  V  C  F  L  K  Y  T  R  W  L  N  F  S  A  *  Y  H  R  S  H  C  H  R  R  R  F  S  W  P  S  S  C  H  S  A  S  S  *  Q  H  P  L  S  P  S  R  S  F  *  C  R  W  W  S  R  S  V  R  C  S  *  R  I  Y  P  *  S  W  F  P  D  F  H  Y  W  L  S  *  S  P  K  S  P  *  L  *  L  F  R  P  Q  K  I  L  F  G  G  S  G  L  L  W  W  S  F  P  H  R  C  *  S  S  P  A  F  R  R  C  T  A  I  F  N  *  P  N  W  F  S  C  G  *  I  T  Y  R  I  D  *  I  E  S  F  D  A  R  *  *  *  N  I  E  C  *  *  R  T  Y  D  E  F  I  K  E  D  R  F  F  *  C  N  I  G  K  V  L  S  T  V  F  W  W  N  F  L  R  *  R  A  *  N  N  V  A  A  V  Q  F  H  L  Q  M  P  S  S  W  *  Q  H  T  S  G  E  G  H  C  G  H  S  G  T  V  G  G  K  T  A  V  E  F  N  I  V  Q  Y  T  C  C  F  R  *  F  R  I  G  F  Q  H  K  N  K  S  D  T  T  K  W  G  N  V  G  K  *  I  W  G  N  I  G  S  *  R  A  *  S  C  Q  V  V  G  G  R  K  N  R  *  G  S  A  T  G  S  E  H  S  M  F  V  F  F  S  *  P  R  Q  S  S  G  A  G  S  G  S  S  S  *  R  I  G  *  R  Y  R  *  *  H  V  L  R  D  Q  C  G  S  L  L  C  S  G  R  E  G  T  G  F  C  H  A  C  G  A  L  W  *  C  G  R  *  G  F  G  G  S  G  R  E  G  A  I  G  L  V  W  G  V  G  S  W  V  M  G  L  L  E  D  V  Q  D  R  V  C  P  T  E  P  M  P  T  H  *  L  E  E  E  P  E  S  E  T  G  L  V  H  L  W  R  L  C  D  *  R  Y  F  *  W  S  F  S  F  W  E  K  S  S  R  N  F  V  T  R  *  S  S  G  Y  C  I  A  *  F  W  F  E  F  F  F  H  L  C  K  S  R  S  F  E  C  C  *  F  I  C  I  W  N  H  K  R  F  E  I  I  Y  M  Q  *  L  </first_frame>
            <second_frame>  C  L  P  A  T  L  P  H  P  S  S  T  L  F  S  T  R  R  R  F  P  L  L  K  P  P  Y  A  S  S  N  I  P  V  G  S  T  S  Q  P  N  T  T  G  V  I  V  I  G  G  G  L  A  G  L  A  A  A  I  R  L  Q  A  D  N  I  P  F  L  L  L  E  A  S  D  A  V  G  G  R  V  R  S  D  V  V  D  G  Y  T  L  D  R  G  F  Q  I  F  I  T  G  Y  P  E  A  R  K  V  L  D  Y  D  S  L  D  L  R  K  F  Y  S  G  A  Q  V  Y  Y  G  G  R  F  H  T  V  A  D  P  L  R  H  F  A  D  A  L  Q  S  L  T  N  P  I  G  S  V  V  D  K  L  L  I  G  L  T  R  L  K  V  L  T  Q  G  D  D  E  I  L  S  A  D  E  E  P  T  M  N  L  L  K  K  I  G  F  S  D  A  I  L  E  R  F  F  R  P  F  F  G  G  I  F  F  D  R  E  L  E  T  T  S  R  L  F  N  F  I  F  K  C  L  A  L  G  D  N  T  L  P  A  K  G  I  A  A  I  P  E  Q  L  A  A  K  L  P  S  N  S  I  L  F  N  T  R  V  V  S  V  D  S  G  S  D  S  S  T  K  I  R  V  T  L  Q  N  G  E  M  L  E  S  E  F  G  V  I  L  A  V  E  E  P  E  A  V  K  L  L  A  G  E  K  T  G  E  V  R  Q  P  V  R  S  T  V  C  L  Y  F  S  A  D  Q  G  K  V  P  V  Q  D  P  V  L  L  L  N  G  S  G  K  G  I  V  N  N  M  F  F  A  T  N  V  A  P  S  Y  A  P  A  G  K  A  L  V  S  V  T  L  V  G  L  Y  G  D  V  A  D  E  D  L  V  D  R  V  V  K  E  L  S  G  W  F  G  E  S  V  V  G  S  W  G  Y  L  R  M  Y  R  I  G  F  A  Q  P  N  Q  C  P  P  T  N  L  K  K  N  P  K  V  K  P  G  L  Y  I  C  G  D  Y  V  T  S  A  T  F  D  G  A  L  V  S  G  K  K  A  A  E  T  L  L  Q  D  K  A  L  V  I  V  *  L  N  F  G  L  S  F  F  S  T  C  V  K  V  E  V  L  N  V  V  D  L  F  V  Y  G  I  I  N  V  S  R  S  F  T  C  N  N  C </second_frame>
            <third_frame>   A  F  P  P  L  S  L  T  L  P  Q  L  F  S  P  R  A  A  A  S  H  Y  *  N  R  R  M  L  P  Q  I  Y  P  L  A  Q  L  L  S  L  I  P  P  E  S  L  S  S  A  A  V  *  L  A  *  Q  L  P  F  G  F  K  L  T  T  S  P  F  S  F  S  K  L  L  M  P  L  V  V  A  F  G  P  M  *  L  T  D  I  P  L  I  V  V  S  R  F  S  L  L  V  I  L  K  P  E  K  S  L  I  M  T  L  *  T  S  E  N  S  I  R  G  L  R  F  T  M  V  V  V  S  T  P  L  L  I  L  S  G  I  S  Q  M  H  C  N  L  *  L  T  Q  L  V  Q  L  W  I  N  Y  L  *  D  *  L  D  *  K  F  *  R  K  V  M  M  K  Y  *  V  L  M  K  N  L  R  *  I  Y  *  R  R  S  V  F  L  M  Q  Y  W  K  G  S  F  D  R  F  L  V  E  F  S  S  I  E  S  L  K  Q  R  R  G  C  S  I  S  S  S  N  A  *  L  L  V  T  T  H  F  R  R  R  A  L  R  P  F  R  N  S  W  R  Q  N  C  R  R  I  Q  Y  C  S  I  H  V  L  F  P  L  I  Q  D  R  I  P  A  Q  K  *  E  *  H  Y  K  M  G  K  C  W  K  V  N  L  G  *  Y  W  Q  L  K  S  L  K  L  S  S  C  W  R  E  K  K  P  V  R  F  G  N  R  F  G  A  Q  Y  V  C  I  F  Q  L  T  K  A  K  F  R  C  R  I  R  F  F  F  L  T  D  R  V  K  V  S  L  I  T  C  S  S  R  P  M  W  L  P  L  M  L  R  Q  G  R  H  W  F  L  S  R  L  W  G  F  M  V  M  W  Q  M  R  I  W  W  I  G  S  *  R  S  Y  R  V  G  L  G  S  R  *  L  G  H  G  V  T  *  G  C  T  G  S  G  L  P  N  R  T  N  A  H  P  L  T  *  R  R  T  R  K  *  N  R  A  C  T  F  V  E  I  M  *  L  A  L  L  L  M  E  L  *  F  L  G  K  K  Q  Q  K  L  C  Y  K  I  K  L  W  L  L  Y  S  L  I  L  V  *  V  F  F  P  L  V  *  K  *  K  F  *  M  L  L  I  Y  L  Y  M  E  S  *  T  F  R  D  H  L  H  A  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19952" stop="21370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLPATLPHPSSTLFSTRRRFPLLKPPYASSNIPVGSTSQPNTTGVIVIGGGLAGLAAAIRLQADNIPFLLLEASDAVGGRVRSDVVDGYTLDRGFQIFITGYPEARKVLDYDSLDLRKFYSGAQVYYGGRFHTVADPLRHFADALQSLTNPIGSVVDKLLIGLTRLKVLTQGDDEILSADEEPTMNLLKKIGFSDAILERFFRPFFGGIFFDRELETTSRLFNFIFKCLALGDNTLPAKGIAAIPEQLAAKLPSNSILFNTRVVSVDSGSDSSTKIRVTLQNGEMLESEFGVILAVEEPEAVKLLAGEKTGEVRQPVRSTVCLYFSADQGKVPVQDPVLLLNGSGKGIVNNMFFATNVAPSYAPAGKALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKALVIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28479" PGL_stop="24818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28479" e_stop="28154"/>
            <exon e_start="27772" e_stop="27358"/>
            <exon e_start="27187" e_stop="26820"/>
            <exon e_start="26371" e_stop="26135"/>
            <exon e_start="25395" e_stop="24818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.598" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28479" e_stop="28154" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.598" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28153" i_stop="27773" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27772" e_stop="27358" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27187" e_stop="26820" e_length="368"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26371" e_stop="26135" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="25395" e_stop="24818" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28479" stop="28154"/>
              <exon start="27772" stop="27405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28479" stop="28154"/>
              <exon start="27772" stop="27522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28479" stop="28154"/>
              <exon start="27772" stop="27717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28465" stop="28154"/>
              <exon start="27772" stop="27523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28447" stop="28154"/>
              <exon start="27772" stop="27428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28390" stop="28154"/>
              <exon start="27772" stop="27358"/>
              <exon start="27187" stop="27129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27358"/>
              <exon start="27187" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="24914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27658" stop="27358"/>
              <exon start="27187" stop="26976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27179" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27179" stop="26820"/>
              <exon start="26371" stop="26199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26912" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26907" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="24905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="26135"/>
              <exon start="25395" stop="24906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26258" stop="26135"/>
              <exon start="25395" stop="24818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26252" stop="26135"/>
              <exon start="25395" stop="24954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26249" stop="26135"/>
              <exon start="25395" stop="24903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26135"/>
              <exon start="25395" stop="24911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26213" stop="26135"/>
              <exon start="25395" stop="24920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452577" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26135"/>
              <exon start="25395" stop="24984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26171" stop="26135"/>
              <exon start="25395" stop="24903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26170" stop="26135"/>
              <exon start="25395" stop="24906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="24920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT : AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</gDNA_template>
            <first_frame> K  R  K  K  K  I  K  K  A  A  F  F  S  S  F  I  F  F  F  I  F  L  S  I  L  I  S  H  I  Q  L  K  N  R  Y  I  E  R  K  R  K  T  K  N  *  K  R  N  Q  Q  N  R  K  K  T  *  S  F  L  C  I  S  Y  S  L  T  V  Y  S  H  K  L  W  L  I  F  N  G  S  V  D  L  T  F  I  G  Y  V  *  L  Y  F  H  T  V  *  F  S  N  I  I  P  Y  K  A  *  S  Q  L :   T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S  L  L  I  F  Y  Q  F  Y  L  L  T  F  L  W  *  M  *  M  N  A  S  H  F  E  P  I  T  T  </first_frame>
            <second_frame>  R  G  K  K  K  L  K  K  L  P  F  F  L  L  L  S  S  S  S  S  S  F  P  F  S  S  P  T  F  N  *  K  T  D  I  *  R  E  K  G  K  Q  K  T  E  K  E  T  N  K  T  G  K  R  L  N  L  F  S  V  F  H  I  L  *  P  Y  I  L  I  N  S  G  *  S  L  M  D  L  *  I  *  R  L  L  A  T  F  N  C  I  F  T  L  C  D  S  V  I  L  Y  H  I  R  P  N  H  N   : *  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L  L  C  L  Y  S  I  N  F  T  C  S  L  F  C  G  K  C  K  *  M  P  L  I  L  N  P  *  R  Q </second_frame>
            <third_frame>   E  E  K  K  N  *  K  S  C  L  F  F  F  F  Y  L  L  L  H  L  P  F  H  S  H  L  P  H  S  T  E  K  Q  I  Y  R  E  K  K  E  N  K  K  L  K  K  K  P  T  K  Q  E  K  D  L  I  F  S  L  Y  F  I  F  F  N  R  I  F  S  *  T  L  V  D  L  *  W  I  C  R  S  N  V  Y  W  L  R  L  I  V  F  S  H  C  V  I  Q  *  Y  Y  T  I  *  G  L  I  T  T  :  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  S  A  Y  I  L  S  I  L  L  A  H  F  S  V  V  N  V  N  E  C  L  S  F  *  T  H  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27679" stop="27358"/>
                    <exon start="27187" stop="26820"/>
                    <exon start="26371" stop="26135"/>
                    <exon start="25395" stop="25147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27775" e_stop="27358"/>
            <exon e_start="27187" e_stop="26820"/>
            <exon e_start="26371" e_stop="26135"/>
            <exon e_start="25395" e_stop="24818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27775" e_stop="27358" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27357" i_stop="27188" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27187" e_stop="26820" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="26819" i_stop="26372" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26371" e_stop="26135" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26134" i_stop="25396" i_length="739"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="25395" e_stop="24818" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="27358"/>
              <exon start="27187" stop="26820"/>
              <exon start="26371" stop="26348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27358"/>
              <exon start="27187" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="24914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27658" stop="27358"/>
              <exon start="27187" stop="26976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27179" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27179" stop="26820"/>
              <exon start="26371" stop="26199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26912" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="25024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26907" stop="26820"/>
              <exon start="26371" stop="26135"/>
              <exon start="25395" stop="24905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="26135"/>
              <exon start="25395" stop="24906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26258" stop="26135"/>
              <exon start="25395" stop="24818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26252" stop="26135"/>
              <exon start="25395" stop="24954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26249" stop="26135"/>
              <exon start="25395" stop="24903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26135"/>
              <exon start="25395" stop="24911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26213" stop="26135"/>
              <exon start="25395" stop="24920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452577" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26135"/>
              <exon start="25395" stop="24984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26171" stop="26135"/>
              <exon start="25395" stop="24903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26170" stop="26135"/>
              <exon start="25395" stop="24906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="24920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</gDNA_template>
            <first_frame> Q  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  S  A  Y  I  L  S  I  L  L  A  H  F  S  V  V  N  V  N  E  C  L  S  F  *  T  H  N  D   </first_frame>
            <second_frame>  R  T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S  L  L  I  F  Y  Q  F  Y  L  L  T  F  L  W  *  M  *  M  N  A  S  H  F  E  P  I  T  T  </second_frame>
            <third_frame>   E  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L  L  C  L  Y  S  I  N  F  T  C  S  L  F  C  G  K  C  K  *  M  P  L  I  L  N  P  *  R  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27679" stop="27358"/>
                    <exon start="27187" stop="26820"/>
                    <exon start="26371" stop="26135"/>
                    <exon start="25395" stop="25147"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26056" e_stop="24920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="26056" e_stop="24920" e_length="1137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26056" stop="25663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26053" stop="25434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25683" stop="25004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25361" stop="24920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</gDNA_template>
            <first_frame> K  L  V  *  F  S  L  G  S  P  V  Y  I  L  S  T  L  Q  T  H  V  A  W  *  F  F  S  L  L  I  T  A  L  L  H  *  K  L  *  L  *  F  T  P  P  F  W  L  Y  T  V  T  L  H  L  K  K  I  T  S  F  N  I  M  C  R  F  R  E  Q  I  I  S  V  I  T  S  C  S  H  *  L  Y  C  S  *  K  A  Q  C  G  R  N  V  P  C  L  *  H  T  R  N  K  L  N  S  Y  S  *  I  L  I  Y  S  Q  *  K  A  K  L  C  V  P  R  A  H  P  F  D  E  N  I  S  L  L  N  K  S  Y  Q  I  S  E  R  Q  L  L  C  E  V  *  K  M  E  I  R  N  F  K  V  H  S  S  D  A  *  M  E  V  H  R  A  Y  T  S  L  S  N  S  L  S  C  M  L  F  R  V  L  P  S  *  I  R  V  E  V  H  L  N  V  D  G  F  Q  C  *  A  Y  *  E  S  N  Y  I  F  Y  I  H  S  S  G  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F </first_frame>
            <second_frame>  S  W  S  D  F  P  *  A  V  L  F  I  F  *  A  H  Y  K  L  T  *  P  G  S  S  F  L  C  *  S  P  H  Y  C  T  E  S  F  N  Y  N  L  L  P  P  F  G  Y  T  Q  L  H  C  I  L  K  K  L  H  H  L  T  S  C  A  D  L  E  S  R  L  F  R  *  L  H  L  V  V  T  N  Y  I  A  R  K  K  H  N  A  V  E  M  F  H  V  F  D  I  P  E  T  N  *  T  P  I  L  R  Y  S  S  I  V  N  K  R  Q  N  Y  V  Y  H  E  H  T  H  L  T  K  T  L  V  Y  L  T  K  A  I  R  L  A  N  D  N  Y  F  V  K  Y  E  K  W  K  *  E  T  S  K  F  I  L  R  M  L  E  W  K  Y  T  G  L  I  L  P  C  Q  I  P  F  R  V  C  C  S  V  C  C  H  H  E  *  G  L  R  F  I  *  M  L  M  D  F  N  V  E  L  I  R  K  V  T  T  F  S  I  F  I  L  Q  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L   </second_frame>
            <third_frame>   V  G  L  I  F  L  R  Q  S  C  L  Y  F  K  H  I  T  N  S  R  S  L  V  V  L  F  F  A  N  H  R  I  I  A  L  K  A  L  I  I  I  Y  S  P  L  L  V  I  H  S  Y  I  A  S  *  K  N  Y  I  I  *  H  H  V  Q  I  *  R  A  D  Y  F  G  N  Y  I  L  *  S  L  I  I  L  L  V  K  S  T  M  R  *  K  C  S  M  S  L  T  Y  Q  K  Q  I  E  L  L  F  L  D  T  H  L  *  S  I  K  G  K  I  M  C  T  T  S  T  P  I  *  R  K  H  *  F  T  *  Q  K  L  S  D  *  R  T  T  I  T  L  *  S  M  K  N  G  N  K  K  L  Q  S  S  F  F  G  C  L  N  G  S  T  Q  G  L  Y  F  P  V  K  F  P  F  V  Y  V  V  P  C  V  A  I  M  N  K  G  *  G  S  S  E  C  *  W  I  S  M  L  S  L  L  G  K  *  L  H  F  L  Y  S  F  F  R  E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25461" stop="25147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLMDFNVELIRKVTTFSIFILQGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38059" PGL_stop="38975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38059" e_stop="38975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38059" e_stop="38975" e_length="917"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38059" stop="38975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</gDNA_template>
            <first_frame> Y  P  L  E  N  Q  D  I  D  S  L  E  R  P  L  I  H  E  R  S  S  T  V  I  A  D  N  N  G  F  L  H  D  A  S  P  N  E  I  D  F  P  G  Q  D  L  S  E  Y  P  P  V  S  R  T  S  P  V  P  K  P  K  F  D  F  A  Q  Y  Y  A  F  N  L  T  I  F  A  L  T  L  I  Y  C  S  F  A  P  L  V  V  P  V  G  A  V  Y  F  G  Y  R  Y  L  V  D  K  Y  N  F  L  F  V  Y  R  V  R  G  F  P  A  G  N  D  G  R  L  M  D  T  V  L  S  I  M  R  F  C  V  D  L  F  L  L  S  M  L  L  F  F  S  V  R  G  D  S  T  K  L  Q  A  I  F  T  L  G  L  L  V  V  Y  K  L  L  P  S  D  K  D  S  F  Q  P  A  L  L  Q  G  I  Q  T  I  D  N  I  V  E  G  P  T  D  Y  E  V  F  S  Q  P  T  F  D  W  D  T  Y  N  S  *  L  V  N  K  T  K  D  L  C  *  H  F  V  Y  I  L  I  L  L  R  K  C  S  C  I  Y  Q  I  S  L  L  F  S  W  F  I  L  L  V  V  G  N  R  Y  L  A  *  D  H  K  S  T  C  Y  N  V  *  R  V  P  L  *  *  H  S  L  Y  F  Y  D  Q  V  L  T  N  L  Q  S  E  *  M  L  F  V  Y  L  N  I  C   </first_frame>
            <second_frame>  T  H  W  K  I  K  T  L  I  V  W  R  G  L  *  F  M  K  G  V  Q  L  *  L  L  T  T  M  D  F  Y  T  M  P  L  Q  M  K  L  I  S  L  D  K  I  C  L  N  T  L  Q  S  A  E  P  H  Q  F  Q  S  R  S  L  I  L  H  S  I  M  L  S  I  *  Q  Y  L  P  *  P  *  S  I  V  R  L  L  L  W  W  F  L  L  V  Q  F  T  L  G  T  G  I  *  L  T  S  T  T  S  C  L  Y  T  E  C  E  V  S  L  L  V  M  M  G  G  *  W  I  L  Y  Y  L  S  *  G  F  V  L  T  C  S  S  F  Q  C  Y  F  S  F  L  Y  E  E  T  Q  L  S  F  K  P  Y  S  H  L  D  C  *  W  C  I  N  S  C  P  L  I  R  I  L  F  S  Q  R  Y  Y  K  A  Y  R  L  L  T  T  L  S  K  G  Q  L  I  M  R  F  S  H  N  L  H  L  I  G  I  R  I  I  H  D  L  *  I  K  P  K  I  C  V  D  I  L  Y  I  F  L  F  C  Y  G  S  V  P  A  S  I  R  S  L  S  S  F  L  G  S  S  F  W  W  L  E  T  D  I  W  L  R  T  T  R  A  H  V  I  M  S  N  G  F  H  C  S  S  T  V  C  I  S  T  I  R  S  *  P  I  Y  R  V  N  R  C  C  L  F  T  S  T  S  A  </second_frame>
            <third_frame>   P  I  G  K  S  R  H  *  *  F  G  E  A  S  D  S  *  K  E  F  N  C  D  C  *  Q  Q  W  I  F  T  R  C  L  S  K  *  N  *  F  P  W  T  R  F  V  *  I  P  S  S  Q  P  N  L  T  S  S  K  A  E  V  *  F  C  T  V  L  C  F  Q  S  D  N  I  C  P  N  P  D  L  L  F  V  C  S  S  G  G  S  C  W  C  S  L  L  W  V  P  V  F  S  *  Q  V  Q  L  P  V  C  I  Q  S  A  R  F  P  C  W  *  *  W  E  V  D  G  Y  C  I  I  Y  H  E  V  L  C  *  L  V  P  P  F  N  A  T  F  L  F  C  T  R  R  L  N  *  A  S  S  H  I  H  T  W  I  V  S  G  V  *  T  L  A  L  *  *  G  F  F  S  A  S  V  I  T  R  H  T  D  Y  *  Q  H  C  R  R  A  N  *  L  *  G  F  L  T  T  Y  I  *  L  G  Y  V  *  F  M  T  C  E  *  N  Q  R  F  V  L  T  F  C  I  Y  S  Y  F  V  T  E  V  F  L  H  L  S  D  L  S  P  L  F  L  V  H  P  F  G  G  W  K  Q  I  F  G  L  G  P  Q  E  H  M  L  *  C  L  T  G  S  T  V  V  A  Q  S  V  F  L  R  S  G  L  D  Q  S  T  E  *  I  D  V  V  C  L  P  Q  H  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38059" stop="38706"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPLENQDIDSLERPLIHERSSTVIADNNGFLHDASPNEIDFPGQDLSEYPPVSRTSPVPKPKFDFAQYYAFNLTIFALTLIYCSFAPLVVPVGAVYFGYRYLVDKYNFLFVYRVRGFPAGNDGRLMDTVLSIMRFCVDLFLLSMLLFFSVRGDSTKLQAIFTLGLLVVYKLLPSDKDSFQPALLQGIQTIDNIVEGPTDYEVFSQPTFDWDTYNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38714" stop="38926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKPKICVDILYIFLFCYGSVPASIRSLSSFLGSSFWWLETDIWLRTTRAHVIMSNGFHCSSTVCISTIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42247" PGL_stop="43929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42247" e_stop="42658"/>
            <exon e_start="42795" e_stop="42933"/>
            <exon e_start="43853" e_stop="43929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.908"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.993"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="42247" e_stop="42658" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42659" i_stop="42794" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="42795" e_stop="42933" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42934" i_stop="43852" i_length="919"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="43853" e_stop="43929" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42247" stop="42658"/>
              <exon start="42795" stop="42933"/>
              <exon start="43853" stop="43929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42248" stop="42658"/>
              <exon start="42795" stop="42933"/>
              <exon start="43853" stop="43887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTCTCTCTCTTTTTTCCTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATAATTTCAGTGGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAAAAATGTCTTCTTTTGTGATGTTCTTGCTAACAATAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAGAAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATT : CTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCT : GATATTGAGCTTAGCATATACAGCCTGAATGGATCGTCAACTAGCAAGAAGGTCACCTGCAGTGATAGCTTGTGTAC</gDNA_template>
            <first_frame> S  F  S  L  S  F  F  L  F  L  I  L  P  L  *  T  *  P  N  N  F  S  G  H  Y  S  S  R  S  E  F  F  L  E  T  K  K  C  L  L  L  *  C  S  C  *  Q  *  H  C  S  Q  F  S  H  F  D  N  V  M  A  V  F  S  L  L  K  C  T  T  V  S  L  K  L  S  R  S  G  H  C  R  N  L  L  L  H  F  K  I  G  R  *  R  E  V  F  S  I  I  L  S  W  P  T  T  T  G  C  Y  M  A  G  G  F  L  N  S  M  D  H  L  L  S  L  M  A  I  P  L  S  G  S  A  L  L  D   : S  C  I  T  P  R  *  L  W  G  H  L  G  *  S  F  L  W  L  L  I  L  G  V  T  Y  F  G  C  L  V  N  A  A  D  V  L  L  L  M  I  L  H  F  T  A  L :   I  L  S  L  A  Y  T  A  *  M  D  R  Q  L  A  R  R  S  P  A  V  I  A  C  V  </first_frame>
            <second_frame>  L  F  L  S  L  F  S  F  S  *  F  S  L  C  K  P  N  P  I  I  S  V  A  I  T  V  Q  D  L  S  F  S  *  K  R  K  N  V  F  F  C  D  V  L  A  N  N  N  I  A  L  N  F  P  I  S  T  M  S  W  P  S  F  H  F  *  N  A  P  P  F  L  *  N  C  Q  E  V  V  T  A  E  T  C  C  S  T  S  K  L  A  G  K  G  K  S  S  V  L  Y  S  A  G  Q  P  R  Q  V  A  T  W  Q  E  A  F  *  I  R  W  T  T  Y  F  L  *  W  Q  F  H  F  P  D  Q  L  S  W  I  :  L  A  L  H  H  G  D  F  G  D  T  W  V  E  V  S  C  G  S  *  Y  W  E  *  L  I  L  G  A  L  *  M  R  Q  M  C  F  Y  *  *  S  Y  T  L  Q  L   : *  Y  *  A  *  H  I  Q  P  E  W  I  V  N  *  Q  E  G  H  L  Q  *  *  L  V  Y </second_frame>
            <third_frame>   F  F  S  L  F  F  P  F  L  D  S  P  S  V  N  L  T  Q  *  F  Q  W  P  L  Q  F  K  I  *  V  F  L  R  N  E  K  M  S  S  F  V  M  F  L  L  T  I  T  L  L  S  I  F  P  F  R  Q  C  H  G  R  L  F  T  F  E  M  H  H  R  F  S  E  T  V  K  K  W  S  L  Q  K  L  A  A  P  L  Q  N  W  P  V  K  G  S  L  Q  Y  Y  T  Q  L  A  N  H  D  R  L  L  H  G  R  R  L  F  K  F  D  G  P  L  T  F  S  D  G  N  S  T  F  R  I  S  S  L  G  F :   L  H  Y  T  T  V  T  L  G  T  P  G  L  K  F  L  V  A  L  D  T  G  S  D  L  F  W  V  P  C  E  C  G  R  C  A  S  T  D  D  P  T  L  Y  S  S  :  D  I  E  L  S  I  Y  S  L  N  G  S  S  T  S  K  K  V  T  C  S  D  S  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42336" stop="42658"/>
                    <exon start="42795" stop="42933"/>
                    <exon start="43853" stop="43927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLRNEKMSSFVMFLLTITLLSIFPFRQCHGRLFTFEMHHRFSETVKKWSLQKLAAPLQNWPVKGSLQYYTQLANHDRLLHGRRLFKFDGPLTFSDGNSTFRISSLGFLHYTTVTLGTPGLKFLVALDTGSDLFWVPCECGRCASTDDPTLYSSDIELSIYSLNGSSTSKKVTCSDSLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44685" PGL_stop="47592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44685" e_stop="44730"/>
            <exon e_start="44814" e_stop="44887"/>
            <exon e_start="44979" e_stop="45078"/>
            <exon e_start="45172" e_stop="45229"/>
            <exon e_start="46360" e_stop="46431"/>
            <exon e_start="46526" e_stop="46783"/>
            <exon e_start="47482" e_stop="47592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.649" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44685" e_stop="44730" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.982">
            <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44814" e_stop="44887" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.717">
            <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44979" e_stop="45078" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45172" e_stop="45229" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.972">
            <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46360" e_stop="46431" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.649" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46783" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="46784" i_stop="47481" i_length="698"/>
          </intron>
          <exon e_serial="7" e_score="0.936">
            <gDNA_exon_boundary e_start="47482" e_stop="47592" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44685" stop="44730"/>
              <exon start="44814" stop="44887"/>
              <exon start="44979" stop="45078"/>
              <exon start="45172" stop="45229"/>
              <exon start="46360" stop="46431"/>
              <exon start="46526" stop="46783"/>
              <exon start="47482" stop="47592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44685" stop="44730"/>
              <exon start="44814" stop="44887"/>
              <exon start="44979" stop="45078"/>
              <exon start="45172" stop="45229"/>
              <exon start="46360" stop="46431"/>
              <exon start="46526" stop="46783"/>
              <exon start="47482" stop="47575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT : TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG : TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG : AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC : AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT : GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG : GTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACCTCCGTTTCGTTTTAA</gDNA_template>
            <first_frame> L  Y  L  S  C  G  P  I  L  Y  K  A  F  R  K   : F  P  F  S  S  T  R  Q  A  A  S  T  *  S  E  D  P  L  *  I  L  L  *  Y  E  :  S  *  *  K  Y  *  L  D  S  *  F  K  P  N  Y  E  W  G  R  P  T  C  C  Q  *  S  N  Y  C  H  I  H  T   : E  S  T  N  V  L  P  G  H  C  E  E  *  C  S  K  Y  N  W  T :   E  L  H  D  W  I  P  L  C  V  *  S  R  K  N  H  P  R  L  E  E  I  *  L :   L  *  Y  *  E  N  R  P  F  P  I  T  T  C  *  Y  H  P  C  S  T  C  L  C  C  C  A  W  K  *  *  C  R  E  I  T  *  K  D  D  N  Y  S  S  K  F  F  C  I  I  C  L  S  N  M  L  F  E  P  H  K  L  L  P  S  I  C  D  I  A  T  F  I  I  A  T  I  S  S  F  S  H  *  G  F  R :   L  F  L  M  D  P  P  N  K  I  T  I  L  *  R  S  I  T  F  E  N  N  R  M  L  H  F  L  L  I  L  P  P  F  R  F   </first_frame>
            <second_frame>  F  T  Y  L  A  D  L  S  Y  T  K  L  S  E  S  :  F  H  S  Q  V  R  D  K  R  R  P  P  D  P  R  I  P  F  E  Y  C  Y  D  M  S :   P  D  E  N  T  S  L  I  P  S  L  S  L  T  M  S  G  G  G  Q  L  A  V  N  D  P  I  I  V  I  S  T  Q  :  N  Q  L  M  Y  C  L  A  I  V  K  S  D  A  L  N  I  I  G   : Q  N  F  M  T  G  Y  R  F  V  F  D  R  E  K  I  I  L  G  W  K  K  F  D   : C  Y  D  I  E  K  I  D  H  F  P  S  Q  P  V  N  T  T  H  V  P  P  A  F  A  V  V  P  G  N  D  N  A  E  K  S  H  E  R  T  T  T  T  R  Q  S  S  F  A  S  S  V  Y  Q  T  C  Y  L  N  L  I  N  C  F  L  A  S  V  I  L  L  L  L  *  L  L  P  *  A  H  S  H  T  E  D  S   : G  C  F  *  W  T  L  Q  T  K  S  L  F  C  D  V  A  *  H  L  R  I  I  G  C  C  I  F  C  *  Y  Y  L  R  F  V  L  </second_frame>
            <third_frame>   L  P  I  L  R  T  Y  P  I  Q  S  F  Q  K  V :   S  I  L  K  Y  E  T  S  G  V  H  L  I  R  G  S  P  L  N  I  V  M  I  *   : V  L  M  K  I  L  A  *  F  L  V  *  A  *  L  *  V  G  E  A  N  L  L  S  M  I  Q  L  L  S  Y  P  H  R :   I  N  *  C  I  A  W  P  L  *  R  V  M  L  *  I  *  L  D  :  R  T  S  *  L  D  T  A  L  C  L  I  E  K  K  S  S  S  V  G  R  N  L  I  :  V  M  I  L  R  K  *  T  I  S  H  H  N  L  L  I  P  P  M  F  H  L  P  L  L  L  C  L  E  M  I  M  Q  R  N  H  M  K  G  R  Q  L  L  V  K  V  L  L  H  H  L  F  I  K  H  V  I  *  T  S  *  T  A  S  *  H  L  *  Y  C  Y  F  Y  N  C  Y  H  K  L  I  L  T  L  R  I  Q  :  V  V  F  D  G  P  S  K  Q  N  H  Y  F  V  T  *  H  N  I  *  E  *  *  D  V  A  F  S  V  N  T  T  S  V  S  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44686" stop="44730"/>
                    <exon start="44814" stop="44887"/>
                    <exon start="44979" stop="45078"/>
                    <exon start="45172" stop="45229"/>
                    <exon start="46360" stop="46431"/>
                    <exon start="46526" stop="46746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYLADLSYTKLSESFHSQVRDKRRPPDPRIPFEYCYDMSPDENTSLIPSLSLTMSGGGQLAVNDPIIVISTQNQLMYCLAIVKSDALNIIGQNFMTGYRFVFDREKIILGWKKFDCYDIEKIDHFPSQPVNTTHVPPAFAVVPGNDNAEKSHERTTTTRQSSFASSVYQTCYLNLINCFLASVILLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44979" e_stop="45078"/>
            <exon e_start="45172" e_stop="45229"/>
            <exon e_start="46360" e_stop="46431"/>
            <exon e_start="46526" e_stop="46983"/>
            <exon e_start="47217" e_stop="47241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="0.970"/>
          <exon-intron don_prob="0.908" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.649" acc_prob="0.996" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-only e_score="0.720"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="44979" e_stop="45078" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45172" e_stop="45229" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.972">
            <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="46360" e_stop="46431" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.649" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.910">
            <gDNA_exon_boundary e_start="46526" e_stop="46983" e_length="458"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46984" i_stop="47216" i_length="233"/>
          </intron>
          <exon e_serial="5" e_score="0.720">
            <gDNA_exon_boundary e_start="47217" e_stop="47241" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44979" stop="45078"/>
              <exon start="45172" stop="45229"/>
              <exon start="46360" stop="46431"/>
              <exon start="46526" stop="46983"/>
              <exon start="47217" stop="47241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418286" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG : AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC : AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT : GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTG : ATTAAGAAAGGAAAAAAAAAGGTAC</gDNA_template>
            <first_frame> S  *  *  K  Y  *  L  D  S  *  F  K  P  N  Y  E  W  G  R  P  T  C  C  Q  *  S  N  Y  C  H  I  H  T   : E  S  T  N  V  L  P  G  H  C  E  E  *  C  S  K  Y  N  W  T :   E  L  H  D  W  I  P  L  C  V  *  S  R  K  N  H  P  R  L  E  E  I  *  L :   L  *  Y  *  E  N  R  P  F  P  I  T  T  C  *  Y  H  P  C  S  T  C  L  C  C  C  A  W  K  *  *  C  R  E  I  T  *  K  D  D  N  Y  S  S  K  F  F  C  I  I  C  L  S  N  M  L  F  E  P  H  K  L  L  P  S  I  C  D  I  A  T  F  I  I  A  T  I  S  S  F  S  H  *  G  F  R  Y  A  S  *  D  F  L  T  H  I  *  C  R  *  S  Y  L  Q  S  S  N  M  D  R  N  F  W  F  A  C  S  Y  L  I  L  R  L  T  I  *  C  I  E  M  L  I  H  Y  T  M  I  V  Y  V  P  Y  D  C  N  R  T  V  R  L  Y  S   : D  *  E  R  K  K  K  G   </first_frame>
            <second_frame>  P  D  E  N  T  S  L  I  P  S  L  S  L  T  M  S  G  G  G  Q  L  A  V  N  D  P  I  I  V  I  S  T  Q  :  N  Q  L  M  Y  C  L  A  I  V  K  S  D  A  L  N  I  I  G   : Q  N  F  M  T  G  Y  R  F  V  F  D  R  E  K  I  I  L  G  W  K  K  F  D   : C  Y  D  I  E  K  I  D  H  F  P  S  Q  P  V  N  T  T  H  V  P  P  A  F  A  V  V  P  G  N  D  N  A  E  K  S  H  E  R  T  T  T  T  R  Q  S  S  F  A  S  S  V  Y  Q  T  C  Y  L  N  L  I  N  C  F  L  A  S  V  I  L  L  L  L  *  L  L  P  *  A  H  S  H  T  E  D  S  G  M  L  L  R  T  F  *  H  I  Y  S  A  D  N  H  T  C  R  A  P  I  W  T  E  I  F  G  L  P  A  H  I  *  F  *  G  *  P  Y  N  V  *  K  C  *  Y  I  T  L  *  *  F  M  Y  L  M  I  A  I  E  Q  *  D  C  T  V  :  I  K  K  G  K  K  K  V  </second_frame>
            <third_frame>   L  M  K  I  L  A  *  F  L  V  *  A  *  L  *  V  G  E  A  N  L  L  S  M  I  Q  L  L  S  Y  P  H  R :   I  N  *  C  I  A  W  P  L  *  R  V  M  L  *  I  *  L  D  :  R  T  S  *  L  D  T  A  L  C  L  I  E  K  K  S  S  S  V  G  R  N  L  I  :  V  M  I  L  R  K  *  T  I  S  H  H  N  L  L  I  P  P  M  F  H  L  P  L  L  L  C  L  E  M  I  M  Q  R  N  H  M  K  G  R  Q  L  L  V  K  V  L  L  H  H  L  F  I  K  H  V  I  *  T  S  *  T  A  S  *  H  L  *  Y  C  Y  F  Y  N  C  Y  H  K  L  I  L  T  L  R  I  Q  V  C  F  L  G  L  F  N  T  Y  I  V  Q  I  I  I  L  A  E  L  Q  Y  G  Q  K  F  L  V  C  L  L  I  S  D  F  E  A  N  H  I  M  Y  R  N  V  N  T  L  H  Y  D  S  L  C  T  L  *  L  Q  *  N  S  E  I  V  Q  * :   L  R  K  E  K  K  R  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44980" stop="45078"/>
                    <exon start="45172" stop="45229"/>
                    <exon start="46360" stop="46431"/>
                    <exon start="46526" stop="46746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDENTSLIPSLSLTMSGGGQLAVNDPIIVISTQNQLMYCLAIVKSDALNIIGQNFMTGYRFVFDREKIILGWKKFDCYDIEKIDHFPSQPVNTTHVPPAFAVVPGNDNAEKSHERTTTTRQSSFASSVYQTCYLNLINCFLASVILLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46730" stop="46954"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCYFYNCYHKLILTLRIQVCFLGLFNTYIVQIIILAELQYGQKFLVCLLISDFEANHIMYRNVNTLHYDSLCTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44711" e_stop="44730"/>
            <exon e_start="44814" e_stop="44887"/>
            <exon e_start="44979" e_stop="45078"/>
            <exon e_start="45172" e_stop="45229"/>
            <exon e_start="46360" e_stop="46431"/>
            <exon e_start="46526" e_stop="46758"/>
            <exon e_start="47223" e_stop="47239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.717" e_score="0.973"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="0.980"/>
          <exon-intron don_prob="0.908" acc_prob="0.972" e_score="0.983"/>
          <exon-intron don_prob="0.649" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44711" e_stop="44730" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.982">
            <gDNA_intron_boundary i_start="44731" i_stop="44813" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="44814" e_stop="44887" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.717">
            <gDNA_intron_boundary i_start="44888" i_stop="44978" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="44979" e_stop="45078" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="45079" i_stop="45171" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="45172" e_stop="45229" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.972">
            <gDNA_intron_boundary i_start="45230" i_stop="46359" i_length="1130"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="46360" e_stop="46431" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.649" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46432" i_stop="46525" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.923">
            <gDNA_exon_boundary e_start="46526" e_stop="46758" e_length="233"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46759" i_stop="47222" i_length="464"/>
          </intron>
          <exon e_serial="7" e_score="0.824">
            <gDNA_exon_boundary e_start="47223" e_stop="47239" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44711" stop="44730"/>
              <exon start="44814" stop="44887"/>
              <exon start="44979" stop="45078"/>
              <exon start="45172" stop="45229"/>
              <exon start="46360" stop="46431"/>
              <exon start="46526" stop="46758"/>
              <exon start="47223" stop="47239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413536" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACAAAGCTTTCAGAAAGT : TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG : TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG : AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC : AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT : GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAA : AAAGGAAAAAAAAAGGT</gDNA_template>
            <first_frame> I  Q  S  F  Q  K  V :   S  I  L  K  Y  E  T  S  G  V  H  L  I  R  G  S  P  L  N  I  V  M  I  *   : V  L  M  K  I  L  A  *  F  L  V  *  A  *  L  *  V  G  E  A  N  L  L  S  M  I  Q  L  L  S  Y  P  H  R :   I  N  *  C  I  A  W  P  L  *  R  V  M  L  *  I  *  L  D  :  R  T  S  *  L  D  T  A  L  C  L  I  E  K  K  S  S  S  V  G  R  N  L  I  :  V  M  I  L  R  K  *  T  I  S  H  H  N  L  L  I  P  P  M  F  H  L  P  L  L  L  C  L  E  M  I  M  Q  R  N  H  M  K  G  R  Q  L  L  V  K  V  L  L  H  H  L  F  I  K  H  V  I  *  T  S  *  T  A  S  *  H  L  *  Y  C  Y  F  Y  N  C  Y  H  K :   K  E  K  K  R  </first_frame>
            <second_frame>  Y  K  A  F  R  K   : F  P  F  S  S  T  R  Q  A  A  S  T  *  S  E  D  P  L  *  I  L  L  *  Y  E  :  S  *  *  K  Y  *  L  D  S  *  F  K  P  N  Y  E  W  G  R  P  T  C  C  Q  *  S  N  Y  C  H  I  H  T   : E  S  T  N  V  L  P  G  H  C  E  E  *  C  S  K  Y  N  W  T :   E  L  H  D  W  I  P  L  C  V  *  S  R  K  N  H  P  R  L  E  E  I  *  L :   L  *  Y  *  E  N  R  P  F  P  I  T  T  C  *  Y  H  P  C  S  T  C  L  C  C  C  A  W  K  *  *  C  R  E  I  T  *  K  D  D  N  Y  S  S  K  F  F  C  I  I  C  L  S  N  M  L  F  E  P  H  K  L  L  P  S  I  C  D  I  A  T  F  I  I  A  T  I   : K  R  K  K  K  G </second_frame>
            <third_frame>   T  K  L  S  E  S  :  F  H  S  Q  V  R  D  K  R  R  P  P  D  P  R  I  P  F  E  Y  C  Y  D  M  S :   P  D  E  N  T  S  L  I  P  S  L  S  L  T  M  S  G  G  G  Q  L  A  V  N  D  P  I  I  V  I  S  T  Q  :  N  Q  L  M  Y  C  L  A  I  V  K  S  D  A  L  N  I  I  G   : Q  N  F  M  T  G  Y  R  F  V  F  D  R  E  K  I  I  L  G  W  K  K  F  D   : C  Y  D  I  E  K  I  D  H  F  P  S  Q  P  V  N  T  T  H  V  P  P  A  F  A  V  V  P  G  N  D  N  A  E  K  S  H  E  R  T  T  T  T  R  Q  S  S  F  A  S  S  V  Y  Q  T  C  Y  L  N  L  I  N  C  F  L  A  S  V  I  L  L  L  L  *  L  L  P  *  :  K  G  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44713" stop="44730"/>
                    <exon start="44814" stop="44887"/>
                    <exon start="44979" stop="45078"/>
                    <exon start="45172" stop="45229"/>
                    <exon start="46360" stop="46431"/>
                    <exon start="46526" stop="46746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKLSESFHSQVRDKRRPPDPRIPFEYCYDMSPDENTSLIPSLSLTMSGGGQLAVNDPIIVISTQNQLMYCLAIVKSDALNIIGQNFMTGYRFVFDREKIILGWKKFDCYDIEKIDHFPSQPVNTTHVPPAFAVVPGNDNAEKSHERTTTTRQSSFASSVYQTCYLNLINCFLASVILLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47165" PGL_stop="46289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47165" e_stop="46948"/>
            <exon e_start="46606" e_stop="46289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47165" e_stop="46948" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46947" i_stop="46607" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46606" e_stop="46289" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47165" stop="46948"/>
              <exon start="46606" stop="46289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG : GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</gDNA_template>
            <first_frame> T  L  P  K  I  H  Y  Y  I  I  Y  K  N  K  I  K  E  S  P  *  C  *  S  S  P  K  L  R  L  I  R  D  L  K  L  V  E  T  *  M  Q  L  L  I  Q  A  *  G  S  R  Y  V  L  A  V  A  V  E  R  G  G  T  V  Q  S  H  C  S  I  A  I  I  R :   H  N  S  K  G  R  W  N  M  G  G  I  N  R  L  *  W  E  M  V  Y  F  L  N  I  I  T  C  M  K  A  T  R  P  K  V  *  K  E  *  S  S  C  N  I  *  V  I  G  R  K  N  T  K  N  N  T  H  N  Q  I  S  S  N  R  G  *  F  F  L  D  Q  T  Q  S  G  I  Q  S  *  S  S  L  E  K  D  Q  *  E  Q  Q  Q  S  D  I  T  I  W  K  *  L  V  Q  F  F   </first_frame>
            <second_frame>  H  F  Q  K  S  T  T  I  L  Y  I  K  I  K  *  K  R  V  H  N  V  N  H  R  Q  S  *  G  *  F  E  I  *  S  *  *  R  R  K  C  S  Y  *  F  K  P  K  V  V  D  M  F  *  L  W  L  W  N  E  V  A  L  Y  N  L  T  V  L  L  Q  S  *   : G  T  T  A  K  A  G  G  T  W  V  V  L  T  G  C  D  G  K  W  S  I  F  S  I  S  *  P  A  *  R  P  Q  D  Q  K  Y  E  K  N  N  L  L  V  I  S  K  L  L  E  E  R  T  P  K  T  I  L  T  I  K  F  L  P  T  E  D  D  F  F  S  I  K  H  K  A  V  S  S  H  E  V  L  W  K  K  I  S  K  S  N  N  S  Q  I  S  Q  F  G  N  D  *  Y  N  F  L  </second_frame>
            <third_frame>   T  S  K  N  P  L  L  Y  Y  I  *  K  *  N  K  R  E  S  I  M  L  I  I  A  K  A  K  V  D  S  R  F  E  V  S  R  D  V  N  A  V  I  D  S  S  L  R  *  *  I  C  F  S  C  G  C  G  T  R  W  H  C  T  I  S  L  F  Y  C  N  H  K  :  A  Q  Q  Q  R  Q  V  E  H  G  W  Y  *  Q  V  V  M  G  N  G  L  F  S  Q  Y  H  N  L  H  E  G  H  K  T  K  S  M  K  R  I  I  F  L  *  Y  L  S  Y  W  K  K  E  H  Q  K  Q  Y  S  Q  S  N  F  F  Q  P  R  M  I  F  S  R  S  N  T  K  R  Y  P  V  M  K  F  S  G  K  R  S  V  R  A  T  T  V  R  Y  H  N  L  E  M  T  S  T  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46517" stop="46302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQDQKYEKNNLLVISKLLEERTPKTILTIKFLPTEDDFFSIKHKAVSSHEVLWKKISKSNNSQISQFGND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="50969" PGL_stop="55355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50969" e_stop="51401"/>
            <exon e_start="51951" e_stop="52086"/>
            <exon e_start="52698" e_stop="52933"/>
            <exon e_start="53165" e_stop="53389"/>
            <exon e_start="53484" e_stop="53619"/>
            <exon e_start="53702" e_stop="53775"/>
            <exon e_start="53855" e_stop="53954"/>
            <exon e_start="54030" e_stop="54090"/>
            <exon e_start="54387" e_stop="54458"/>
            <exon e_start="54536" e_stop="54984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.640" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="50969" e_stop="51401" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51951" e_stop="52086" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52698" e_stop="52933" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53165" e_stop="53389" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53484" e_stop="53619" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53702" e_stop="53775" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.640">
            <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53855" e_stop="53954" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54030" e_stop="54090" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54387" e_stop="54458" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="54536" e_stop="54984" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50969" stop="51401"/>
              <exon start="51951" stop="52041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50973" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51184" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52043" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52044" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52703" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52703" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53504" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53508" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53511" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53531" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53572" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53616" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204167" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53709" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53712" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53713" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53750" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53755" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433915" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54626" stop="54984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54777" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT : CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA : CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG : TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA : CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG : TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTT</gDNA_template>
            <first_frame> F  F  F  P  F  S  K  S  P  F  I  S  S  P  F  L  F  L  S  P  C  I  S  I  Y  Q  H  T  K  N  Q  S  F  L  F  F  L  I  Q  T  C  L  I  L  V  K  F  V  I  F  S  L  P  Q  L  F  S  W  R  F  L  D  T  S  *  R  Q  L  M  G  L  G  H  S  G  L  I  S  I  T  G  I  R  I  R  *  R  V  F  W  T  F  M  G  C  L  R  R  G  L  L  N  I  I  Q  L  G  L  N  V  I  G  L  L  R  A  V  A  L  L  I  Q  L  I  P  Q  C  P  L  L  F  L  E  E  M  K  L  C  G  S  V  L  W  D   : S  C  I  M  Q  M  S  L  W  A  V  L  G  Y  H  F  *  W  H  L  T  L  A  V  T  Y  F  G  Y  H  V  I  A  A  T  V  C  V  P  F  R  H  A  V  E  D :   E  *  I  L  I  S  T  A  L  I  R  L  Q  R  V  R  L  F  R  A  M  A  L  C  V  D  K  I  D  D  A  *  L  R  R  M  H  V  L  M  E  L  H  I  S  P  I  T  P  H  H  Q  G  Y  W  W  K  T  S  C  T  *  K  Q  I  M  L  N  K  K  A  L  K  L  Q  L  L  W   : V  V  G  *  D  K  Q  V  H  F  *  L  V  Q  L  L  M  V  Y  L  D  L  V  L  K  I  Y  L  S  Q  A  C  *  Q  A  K  V  L  L  Q  I  L  S  L  C  A  L  D  L  M  V  L  E  E  *  F  L  E  I  K  E  V  Q  A  K  E  K  H  H  S  I  L  I  N  H   : T  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *   : V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  I  P  D  I  C  I  V  N  I  T  L  I  S  F  C  P  F  S  V  Q  D  S  I  *  Y  I  S  F  I  K  N  S   </first_frame>
            <second_frame>  F  F  F  L  S  Q  N  P  L  L  S  P  H  L  F  S  F  F  L  P  V  Y  L  Y  I  N  I  Q  R  I  S  L  F  C  F  S  L  Y  K  H  A  *  F  W  *  N  S  *  F  F  P  C  P  N  Y  F  L  G  D  S  W  I  P  V  E  D  N  *  W  V  W  D  I  R  V  *  Y  P  S  P  V  F  G  S  G  K  G  Y  F  G  P  S  W  V  A  *  E  G  D  C  *  I  L  F  S  L  D  S  T  *  S  V  C  *  G  P  S  P  C  *  Y  N  *  S  H  S  A  P  C  F  F  W  R  K  *  N  F  A  A  Q  F  F  G  I  :  L  A  L  C  K  C  H  C  G  Q  S  W  A  I  I  S  S  G  T  *  H  W  Q  *  L  I  L  A  T  M  *  L  Q  Q  L  C  A  C  P  S  D  T  Q  W  R   : T  N  K  S  *  Y  L  Q  P  *  Y  V  F  N  E  *  D  C  S  V  Q  W  H  F  V  W  T  K  *  T  M  L  S  F  A  E  C  M  C  L  W  S  C  I  S  L  Q  *  H  L  I  I  R  G  T  G  G  R  H  L  A  L  R  N  K  *  C  S  T  K  K  H  *  S  S  N  C  S  G  :  L  W  D  K  T  N  R  C  I  F  N  W  C  S  S  *  W  S  I  W  T  W  Y  *  K  Y  I  C  P  K  H  V  S  K  Q  R  S  C  C  K  F  F  L  Y  V  L  W  T  *  W  Y  W  K  N  S  F  W  R  *  R  K  S  R  P  R  R  N  T  T  Q  S  *  S  T  T  :  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  :  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L  Y  L  I  Y  V  L  *  I  *  L  *  F  L  S  V  L  F  P  F  K  I  Q  Y  N  T  F  R  S  L  K  I  A  </second_frame>
            <third_frame>   F  F  S  F  L  K  I  P  F  Y  L  L  T  F  S  L  S  F  S  L  Y  I  Y  I  S  T  Y  K  E  S  V  F  F  V  F  P  Y  T  N  M  P  N  S  G  K  I  R  N  F  F  L  A  P  I  I  F  L  A  I  L  G  Y  Q  L  K  T  T  D  G  F  G  T  F  G  F  D  I  H  H  R  Y  S  D  P  V  K  G  I  L  D  L  H  G  L  P  E  K  G  T  V  E  Y  Y  S  A  W  T  Q  R  D  R  F  V  K  G  R  R  L  A  D  T  T  N  P  T  V  P  L  A  F  S  G  G  N  E  T  L  R  L  S  S  L  G  F :   L  H  Y  A  N  V  T  V  G  S  P  G  L  S  F  L  V  A  L  D  T  G  S  D  L  F  W  L  P  C  D  C  S  N  C  V  R  A  L  Q  T  R  S  G  G  :  R  I  N  L  N  I  Y  S  P  N  T  S  S  T  S  E  I  V  P  C  N  G  T  L  C  G  Q  N  R  R  C  L  A  S  Q  N  A  C  A  Y  G  V  A  Y  L  S  N  N  T  S  S  S  G  V  L  V  E  D  I  L  H  L  E  T  N  N  A  Q  Q  K  S  I  E  A  P  I  A  L  G :   C  G  I  R  Q  T  G  A  F  L  T  G  A  A  P  N  G  L  F  G  L  G  I  E  N  I  S  V  P  S  M  L  A  S  K  G  L  A  A  N  S  F  S  M  C  F  G  P  D  G  I  G  R  I  V  F  G  D  K  G  S  P  G  Q  G  E  T  P  L  N  L  D  Q  P  H :   P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  S :   A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V  Y  T  *  Y  M  Y  C  K  Y  N  S  D  F  F  L  S  F  F  R  S  R  F  N  I  I  H  F  V  H  *  K  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50971" stop="51401"/>
                    <exon start="51951" stop="52086"/>
                    <exon start="52698" stop="52933"/>
                    <exon start="53165" stop="53389"/>
                    <exon start="53484" stop="53619"/>
                    <exon start="53702" stop="53775"/>
                    <exon start="53855" stop="53954"/>
                    <exon start="54030" stop="54090"/>
                    <exon start="54387" stop="54458"/>
                    <exon start="54536" stop="54801"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSFLKIPFYLLTFSLSFSLYIYISTYKESVFFVFPYTNMPNSGKIRNFFLAPIIFLAILGYQLKTTDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGTVEYYSAWTQRDRFVKGRRLADTTNPTVPLAFSGGNETLRLSSLGFLHYANVTVGSPGLSFLVALDTGSDLFWLPCDCSNCVRALQTRSGGRINLNIYSPNTSSTSEIVPCNGTLCGQNRRCLASQNACAYGVAYLSNNTSSSGVLVEDILHLETNNAQQKSIEAPIALGCGIRQTGAFLTGAAPNGLFGLGIENISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPGQGETPLNLDQPHPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGISANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50969" e_stop="51401"/>
            <exon e_start="51951" e_stop="52086"/>
            <exon e_start="52698" e_stop="52933"/>
            <exon e_start="53165" e_stop="53389"/>
            <exon e_start="53484" e_stop="53619"/>
            <exon e_start="53702" e_stop="53775"/>
            <exon e_start="53855" e_stop="53954"/>
            <exon e_start="54030" e_stop="54090"/>
            <exon e_start="54387" e_stop="54458"/>
            <exon e_start="54536" e_stop="54910"/>
            <exon e_start="55328" e_stop="55355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.640" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="50969" e_stop="51401" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51402" i_stop="51950" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51951" e_stop="52086" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="52087" i_stop="52697" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52698" e_stop="52933" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52934" i_stop="53164" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53165" e_stop="53389" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53390" i_stop="53483" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53484" e_stop="53619" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53702" e_stop="53775" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.640">
            <gDNA_intron_boundary i_start="53776" i_stop="53854" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53855" e_stop="53954" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54030" e_stop="54090" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54387" e_stop="54458" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.963">
            <gDNA_exon_boundary e_start="54536" e_stop="54910" e_length="375"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54911" i_stop="55327" i_length="417"/>
          </intron>
          <exon e_serial="11" e_score="0.714">
            <gDNA_exon_boundary e_start="55328" e_stop="55355" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50969" stop="51401"/>
              <exon start="51951" stop="52041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50973" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51184" stop="51401"/>
              <exon start="51951" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52043" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52044" stop="52086"/>
              <exon start="52698" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52703" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52703" stop="52933"/>
              <exon start="53165" stop="53389"/>
              <exon start="53484" stop="53590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="53389"/>
              <exon start="53484" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53503" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53504" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53508" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53511" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53531" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53572" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53616" stop="53619"/>
              <exon start="53702" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204167" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54910"/>
              <exon start="55328" stop="55355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612230" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53755" stop="53775"/>
              <exon start="53855" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433915" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397878" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT : CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA : CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG : TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA : CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG : TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAAT : AAAAAAAAAAAAATTGAACATGGTACAA</gDNA_template>
            <first_frame> F  F  F  P  F  S  K  S  P  F  I  S  S  P  F  L  F  L  S  P  C  I  S  I  Y  Q  H  T  K  N  Q  S  F  L  F  F  L  I  Q  T  C  L  I  L  V  K  F  V  I  F  S  L  P  Q  L  F  S  W  R  F  L  D  T  S  *  R  Q  L  M  G  L  G  H  S  G  L  I  S  I  T  G  I  R  I  R  *  R  V  F  W  T  F  M  G  C  L  R  R  G  L  L  N  I  I  Q  L  G  L  N  V  I  G  L  L  R  A  V  A  L  L  I  Q  L  I  P  Q  C  P  L  L  F  L  E  E  M  K  L  C  G  S  V  L  W  D   : S  C  I  M  Q  M  S  L  W  A  V  L  G  Y  H  F  *  W  H  L  T  L  A  V  T  Y  F  G  Y  H  V  I  A  A  T  V  C  V  P  F  R  H  A  V  E  D :   E  *  I  L  I  S  T  A  L  I  R  L  Q  R  V  R  L  F  R  A  M  A  L  C  V  D  K  I  D  D  A  *  L  R  R  M  H  V  L  M  E  L  H  I  S  P  I  T  P  H  H  Q  G  Y  W  W  K  T  S  C  T  *  K  Q  I  M  L  N  K  K  A  L  K  L  Q  L  L  W   : V  V  G  *  D  K  Q  V  H  F  *  L  V  Q  L  L  M  V  Y  L  D  L  V  L  K  I  Y  L  S  Q  A  C  *  Q  A  K  V  L  L  Q  I  L  S  L  C  A  L  D  L  M  V  L  E  E  *  F  L  E  I  K  E  V  Q  A  K  E  K  H  H  S  I  L  I  N  H   : T  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *   : V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  I  P  D  I  C  I  V  N  :  K  K  K  K  I  E  H  G  T  </first_frame>
            <second_frame>  F  F  F  L  S  Q  N  P  L  L  S  P  H  L  F  S  F  F  L  P  V  Y  L  Y  I  N  I  Q  R  I  S  L  F  C  F  S  L  Y  K  H  A  *  F  W  *  N  S  *  F  F  P  C  P  N  Y  F  L  G  D  S  W  I  P  V  E  D  N  *  W  V  W  D  I  R  V  *  Y  P  S  P  V  F  G  S  G  K  G  Y  F  G  P  S  W  V  A  *  E  G  D  C  *  I  L  F  S  L  D  S  T  *  S  V  C  *  G  P  S  P  C  *  Y  N  *  S  H  S  A  P  C  F  F  W  R  K  *  N  F  A  A  Q  F  F  G  I  :  L  A  L  C  K  C  H  C  G  Q  S  W  A  I  I  S  S  G  T  *  H  W  Q  *  L  I  L  A  T  M  *  L  Q  Q  L  C  A  C  P  S  D  T  Q  W  R   : T  N  K  S  *  Y  L  Q  P  *  Y  V  F  N  E  *  D  C  S  V  Q  W  H  F  V  W  T  K  *  T  M  L  S  F  A  E  C  M  C  L  W  S  C  I  S  L  Q  *  H  L  I  I  R  G  T  G  G  R  H  L  A  L  R  N  K  *  C  S  T  K  K  H  *  S  S  N  C  S  G  :  L  W  D  K  T  N  R  C  I  F  N  W  C  S  S  *  W  S  I  W  T  W  Y  *  K  Y  I  C  P  K  H  V  S  K  Q  R  S  C  C  K  F  F  L  Y  V  L  W  T  *  W  Y  W  K  N  S  F  W  R  *  R  K  S  R  P  R  R  N  T  T  Q  S  *  S  T  T  :  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  :  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L  Y  L  I  Y  V  L  *  I :   K  K  K  K  L  N  M  V  Q </second_frame>
            <third_frame>   F  F  S  F  L  K  I  P  F  Y  L  L  T  F  S  L  S  F  S  L  Y  I  Y  I  S  T  Y  K  E  S  V  F  F  V  F  P  Y  T  N  M  P  N  S  G  K  I  R  N  F  F  L  A  P  I  I  F  L  A  I  L  G  Y  Q  L  K  T  T  D  G  F  G  T  F  G  F  D  I  H  H  R  Y  S  D  P  V  K  G  I  L  D  L  H  G  L  P  E  K  G  T  V  E  Y  Y  S  A  W  T  Q  R  D  R  F  V  K  G  R  R  L  A  D  T  T  N  P  T  V  P  L  A  F  S  G  G  N  E  T  L  R  L  S  S  L  G  F :   L  H  Y  A  N  V  T  V  G  S  P  G  L  S  F  L  V  A  L  D  T  G  S  D  L  F  W  L  P  C  D  C  S  N  C  V  R  A  L  Q  T  R  S  G  G  :  R  I  N  L  N  I  Y  S  P  N  T  S  S  T  S  E  I  V  P  C  N  G  T  L  C  G  Q  N  R  R  C  L  A  S  Q  N  A  C  A  Y  G  V  A  Y  L  S  N  N  T  S  S  S  G  V  L  V  E  D  I  L  H  L  E  T  N  N  A  Q  Q  K  S  I  E  A  P  I  A  L  G :   C  G  I  R  Q  T  G  A  F  L  T  G  A  A  P  N  G  L  F  G  L  G  I  E  N  I  S  V  P  S  M  L  A  S  K  G  L  A  A  N  S  F  S  M  C  F  G  P  D  G  I  G  R  I  V  F  G  D  K  G  S  P  G  Q  G  E  T  P  L  N  L  D  Q  P  H :   P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  S :   A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V  Y  T  *  Y  M  Y  C  K   : *  K  K  K  N  *  T  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50971" stop="51401"/>
                    <exon start="51951" stop="52086"/>
                    <exon start="52698" stop="52933"/>
                    <exon start="53165" stop="53389"/>
                    <exon start="53484" stop="53619"/>
                    <exon start="53702" stop="53775"/>
                    <exon start="53855" stop="53954"/>
                    <exon start="54030" stop="54090"/>
                    <exon start="54387" stop="54458"/>
                    <exon start="54536" stop="54801"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSFLKIPFYLLTFSLSFSLYIYISTYKESVFFVFPYTNMPNSGKIRNFFLAPIIFLAILGYQLKTTDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGTVEYYSAWTQRDRFVKGRRLADTTNPTVPLAFSGGNETLRLSSLGFLHYANVTVGSPGLSFLVALDTGSDLFWLPCDCSNCVRALQTRSGGRINLNIYSPNTSSTSEIVPCNGTLCGQNRRCLASQNACAYGVAYLSNNTSSSGVLVEDILHLETNNAQQKSIEAPIALGCGIRQTGAFLTGAAPNGLFGLGIENISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPGQGETPLNLDQPHPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGISANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53445" e_stop="53619"/>
            <exon e_start="53702" e_stop="53954"/>
            <exon e_start="54030" e_stop="54090"/>
            <exon e_start="54387" e_stop="54458"/>
            <exon e_start="54536" e_stop="54984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="0.945"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="53445" e_stop="53619" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53620" i_stop="53701" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="53702" e_stop="53954" e_length="253"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53955" i_stop="54029" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54030" e_stop="54090" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="54091" i_stop="54386" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54387" e_stop="54458" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54459" i_stop="54535" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.936">
            <gDNA_exon_boundary e_start="54536" e_stop="54984" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53445" stop="53619"/>
              <exon start="53702" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="53954"/>
              <exon start="54030" stop="54090"/>
              <exon start="54387" stop="54458"/>
              <exon start="54536" stop="54856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54626" stop="54984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54777" stop="54983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTT</gDNA_template>
            <first_frame> L  N  M  Y  L  L  V  L  S  L  C  M  Q  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  V  S  Q  L  L  I  *  L  F  T  F  L  M  S  F  E  L  S  G  L  T  C  S  I  *  A  V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  I  P  D  I  C  I  V  N  I  T  L  I  S  F  C  P  F  S  V  Q  D  S  I  *  Y  I  S  F  I  K  N  S   </first_frame>
            <second_frame>  *  I  C  I  Y  S  F  S  L  S  A  C  S  P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  R  *  A  S  F  *  F  N  F  L  L  S  *  C  P  L  N  F  Q  D  *  P  A  P  F  K  Q  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L  Y  L  I  Y  V  L  *  I  *  L  *  F  L  S  V  L  F  P  F  K  I  Q  Y  N  T  F  R  S  L  K  I  A  </second_frame>
            <third_frame>   E  Y  V  F  T  R  S  L  S  L  H  A  A  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *  G  E  P  A  F  D  L  T  F  Y  F  L  D  V  L  *  T  F  R  T  N  L  L  H  L  S  S  A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V  Y  T  *  Y  M  Y  C  K  Y  N  S  D  F  F  L  S  F  F  R  S  R  F  N  I  I  H  F  V  H  *  K  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53823" stop="53954"/>
                    <exon start="54030" stop="54090"/>
                    <exon start="54387" stop="54458"/>
                    <exon start="54536" stop="54801"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFRTNLLHLSSANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53449" stop="53619"/>
                    <exon start="53702" stop="53779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIYSFSLSACSPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59915" PGL_stop="55213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59915" e_stop="59470"/>
            <exon e_start="57886" e_stop="57820"/>
            <exon e_start="57598" e_stop="57436"/>
            <exon e_start="57317" e_stop="57189"/>
            <exon e_start="56763" e_stop="56060"/>
            <exon e_start="55925" e_stop="55213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59915" e_stop="59470" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59469" i_stop="57887" i_length="1583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57886" e_stop="57820" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57819" i_stop="57599" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="57598" e_stop="57436" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57435" i_stop="57318" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57317" e_stop="57189" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57188" i_stop="56764" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="56763" e_stop="56060" e_length="704"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56059" i_stop="55926" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="55925" e_stop="55213" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59915" stop="59470"/>
              <exon start="57886" stop="57820"/>
              <exon start="57598" stop="57436"/>
              <exon start="57317" stop="57224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57302" stop="57189"/>
              <exon start="56763" stop="56090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57302" stop="57189"/>
              <exon start="56763" stop="56239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57302" stop="57189"/>
              <exon start="56763" stop="56384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57300" stop="57189"/>
              <exon start="56763" stop="56202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57293" stop="57189"/>
              <exon start="56763" stop="56249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56719" stop="56083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56719" stop="56196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56560" stop="56060"/>
              <exon start="55925" stop="55901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56460" stop="56060"/>
              <exon start="55925" stop="55584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56460" stop="56060"/>
              <exon start="55925" stop="55709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56170" stop="56060"/>
              <exon start="55925" stop="55521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56170" stop="56060"/>
              <exon start="55925" stop="55668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55756" stop="55213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG : AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG : GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG : GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG : CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG : GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</gDNA_template>
            <first_frame> V  L  G  F  *  R  E  E  E  R  I  H  G  V  K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R :   R  R  K  R  *  *  *  D  G  Q  *  E  I  T  R  L  *  D  E  S  A  Q  :  V  L  L  C  C  G  G  M  R  F  K  C  Y  S  *  L  S  L  Q  N  L  *  W  G  *  V  *  E  N  I  K  Q  I  R  F  E  V  Y  S  R  F  H  G  I  Q  A  S  T  T  *  H  C  N  R   : G  P  C  R  L  *  R  S  R  F  S  H  S  S  F  A  A  *  Q  Y  *  T  Y  M  G  *  G  *  A  T  T  H  Q  D  L  E  E  T  V  Q  *  *  T   : A  C  R  Y  G  V  E  R  V  F  G  F  *  *  E  W  K  *  *  *  *  G  R  *  *  *  H  R  R  *  I  C  Q  K  E  E  K  T  *  Y  L  P  C  V  T  P  V  W  G  G  F  R  W  K  *  R  G  R  *  P  G  H  G  G  H  I  *  H  W  I  G  R  S  K  Q  T  Y  P  R  K  E  G  *  T  V  G  N  C  V  G  S  L  S  Q  K  E  K  G  E  K  E  V  Q  E  R  *  H  Q  G  F  I  R  R  *  E  Q  R  *  *  S  R  T  Y  R  *  T  *  G  L  L  H  *  R  A  F  R  K  R  G  *  G  F  P  T  *  E  H  Q  E  R  E  A  E  P  *  S  I  *  R  S  *  S  K  *  S  R  A  *  A  I  T  C  R  *  Q  R  R  R  P  *  L  E  G  L  Q  H  E  T  *  K  G  E  G  E  E  G  *  R  N  S  S  R  G  Q  V  A  N  Y  R  L  *  R  S  T  V  F  I  S  L  *  I  T  P  L  C  I  G  P  H  R  S  S  V  Q  T  :  E  C  S  L  C  S  S  V  G  T  K  A  A  Q  G  R  R  R  N  C  E  C  K  T  T  A  R  S  N  *  K  I  R  V  S  N  K  *  K  I  A  V  W  *  F  A  F  K  K  G  E  A  R  A  I  F  F  S  *  I  Y  *  D  E  I  T  T  I  I  I  V  L  S  R  *  G  G  S  K  E  *  K  K  S  S  N  V  K  E  H  R  W  R  G  R  K  E  G  E  R  K  K  S  S  K  G  K  E  E  R  *  K  A  S  K  I  R  E  *  K  V  R  L  Y  K  F  *  S  K  T  T  H  G  I  R  Q  T  R  F  L  K  M  D  H  G  S  V  W  V  N  S  G  L  S  E  S  Q  Y  V  A  T  L  I  V  F  T  L  F  F  T  V  W  P  I  F  M  V  A  S  L  F  C  C  L  N  L  Q  R  C  T  L  Y  H  V  Q  F  F  F  F  Y  S  S  R  L  *  T  *  C  N  S  S  I  L  V  L  R  F  T  I  Q  R  L  L  F  *  L  L  S  *  S  L  F  G  K  K  Y  H   </first_frame>
            <second_frame>  F  *  G  F  R  E  K  K  N  V  F  M  E  S  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E   : E  E  E  K  D  D  D  E  M  D  N  E  K  L  R  A  Y  E  M  S  R  L  R :   Y  Y  Y  A  V  V  E  C  D  S  S  A  T  A  D  Y  L  Y  K  T  C  D  G  V  E  F  E  R  T  S  N  K  L  D  L  R  F  I  P  D  S  M  E  F  K  H  Q  P  R  D  I  A  T  E  :  A  P  A  D  Y  E  G  L  D  F  H  T  R  A  L  Q  H  S  N  I  E  L  T  W  D  E  D  E  P  Q  R  I  R  T  L  K  R  Q  F  N  D  K  Q  :  L  A  D  M  E  L  K  E  F  L  A  S  D  E  S  G  S  D  D  S  E  E  G  D  D  D  T  E  D  K  S  A  K  R  K  K  K  H  D  T  Y  R  A  L  L  Q  S  G  E  G  S  D  G  N  N  E  D  D  D  Q  D  M  E  V  T  F  N  T  G  L  E  D  L  S  K  R  I  L  E  K  K  D  K  Q  S  E  T  V  W  E  A  Y  L  R  K  K  R  E  K  K  K  S  R  K  G  N  T  K  D  S  S  E  D  E  S  S  D  S  D  Q  E  P  I  D  E  P  E  D  F  F  I  E  E  P  S  A  K  G  D  K  D  S  Q  R  K  S  T  R  K  G  K  Q  S  L  E  A  S  E  E  A  E  A  S  R  A  E  L  E  L  L  L  A  D  D  K  G  G  D  P  N  L  K  G  Y  N  M  K  P  K  K  A  K  G  K  K  G  K  G  T  P  V  E  D  K  L  P  T  I  D  Y  E  D  P  R  F  S  S  L  F  K  S  H  L  F  A  L  D  P  T  D  P  Q  F  K  R :   S  A  A  Y  A  R  Q  L  A  Q  K  Q  H  K  V  E  E  E  I  V  S  A  K  Q  Q  P  G  V  T  R  K  L  E  S  A  T  N  E  K  L  Q  S  G  D  L  P  S  R  K  E  K  H  E  L  S  S  L  V  K  S  I  K  M  K  S  Q  Q  L  S  L  S  S  Q  G  K  A  V  V  K  N  E  K  S  Q  A  M  S  K  N  I  D  G  E  G  G  K  K  E  N  E  K  S  R  A  R  A  K  K  K  D  E  K  R  V  K  *  E  S  E  K  *  G  Y  I  N  F  D  Q  R  L  L  M  G  L  D  R  R  G  S  *  K  W  I  M  V  Q  Y  G  *  I  V  A  L  V  N  L  N  T  *  Q  L  *  L  F  L  L  Y  F  L  L  Y  G  L  Y  L  W  L  H  H  C  F  A  V  L  T  C  R  D  V  R  C  T  M  F  N  F  F  F  F  T  V  V  D  C  K  L  N  V  I  P  L  Y  S  S  *  D  S  Q  Y  S  D  F  C  S  D  Y  *  A  E  V  C  L  E  R  N  T  T  </second_frame>
            <third_frame>   F  R  V  L  E  R  R  R  T  Y  S  W  S  Q  K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  :  K  K  K  K  M  M  M  R  W  T  M  R  N  Y  A  P  M  R  *  V  G  S   : G  I  I  M  L  W  W  N  A  I  Q  V  L  Q  L  I  I  F  T  K  L  V  M  G  L  S  L  R  E  H  Q  T  N  *  I  *  G  L  F  Q  I  P  W  N  S  S  I  N  H  V  T  L  Q  Q  R :   P  L  Q  I  M  K  V  *  I  F  T  L  E  L  C  S  I  A  I  L  N  L  H  G  M  R  M  S  H  N  A  S  G  P  *  R  D  S  S  M  I  N  S :   L  Q  I  W  S  *  K  S  F  W  L  L  M  R  V  E  V  M  I  V  R  K  V  M  M  T  Q  K  I  N  L  P  K  G  R  K  N  M  I  P  T  V  R  Y  S  S  L  G  R  V  Q  M  E  I  T  R  T  M  T  R  T  W  R  S  H  L  T  L  D  W  K  I  *  A  N  V  S  *  K  R  R  I  N  S  R  K  L  C  G  K  L  I  S  E  R  K  G  R  K  R  S  P  G  K  V  T  P  R  I  H  Q  K  M  R  A  A  I  V  I  K  N  L  *  M  N  L  R  T  S  S  L  K  S  L  P  Q  K  G  I  R  I  P  N  V  R  A  P  G  K  G  S  R  A  L  K  H  L  K  K  L  K  Q  V  E  Q  S  L  S  Y  Y  L  Q  M  T  K  E  E  T  L  T  *  R  V  T  T  *  N  L  K  R  R  R  G  R  R  V  K  E  L  Q  *  R  T  S  C  Q  L  *  I  M  K  I  H  G  F  H  L  S  L  N  H  T  S  L  H  W  T  P  Q  I  L  S  S  N   : G  V  Q  L  M  L  V  S  W  H  K  S  S  T  R  S  K  K  K  L  *  V  Q  N  N  S  P  E  *  L  E  N  *  S  Q  Q  Q  M  K  N  C  S  L  V  I  C  L  Q  E  R  R  S  T  S  Y  L  L  *  L  N  L  L  R  *  N  H  N  N  Y  H  C  P  L  K  V  R  R  *  *  R  M  K  K  V  K  Q  C  Q  R  T  S  M  E  R  E  E  R  R  R  T  K  K  V  E  Q  G  Q  R  R  K  M  K  S  E  *  N  K  R  V  K  S  K  V  I  *  I  L  I  K  D  Y  S  W  D  *  T  D  E  V  P  E  N  G  S  W  F  S  M  G  E  *  W  P  *  *  I  S  I  R  S  N  F  N  C  F  Y  F  I  F  Y  C  M  A  Y  I  Y  G  C  I  I  V  L  L  S  *  L  A  E  M  Y  V  V  P  C  S  I  F  F  F  L  Q  *  S  T  V  N  L  M  *  F  L  Y  T  R  L  E  I  H  N  T  A  T  S  V  L  I  I  E  L  K  F  V  W  K  E  I  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59908" stop="59470"/>
                    <exon start="57886" stop="57820"/>
                    <exon start="57598" stop="57436"/>
                    <exon start="57317" stop="57189"/>
                    <exon start="56763" stop="56060"/>
                    <exon start="55925" stop="55577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1848</number_coding_nucleotides>
                  <number_encoded_amino_acids>616</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFREKKNVFMESKNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEKDDDEMDNEKLRAYEMSRLRYYYAVVECDSSATADYLYKTCDGVEFERTSNKLDLRFIPDSMEFKHQPRDIATEAPADYEGLDFHTRALQHSNIELTWDEDEPQRIRTLKRQFNDKQLADMELKEFLASDESGSDDSEEGDDDTEDKSAKRKKKHDTYRALLQSGEGSDGNNEDDDQDMEVTFNTGLEDLSKRILEKKDKQSETVWEAYLRKKREKKKSRKGNTKDSSEDESSDSDQEPIDEPEDFFIEEPSAKGDKDSQRKSTRKGKQSLEASEEAEASRAELELLLADDKGGDPNLKGYNMKPKKAKGKKGKGTPVEDKLPTIDYEDPRFSSLFKSHLFALDPTDPQFKRSAAYARQLAQKQHKVEEEIVSAKQQPGVTRKLESATNEKLQSGDLPSRKEKHELSSLVKSIKMKSQQLSLSSQGKAVVKNEKSQAMSKNIDGEGGKKENEKSRARAKKKDEKRVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55544" stop="55311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKTTHGIRQTRFLKMDHGSVWVNSGLSESQYVATLIVFTLFFTVWPIFMVASLFCCLNLQRCTLYHVQFFFFYSSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59873" e_stop="59302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="59873" e_stop="59302" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59873" stop="59397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59871" stop="59302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGG</gDNA_template>
            <first_frame> K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R  R  R  R  R  R  R  D  Q  E  *  Q  W  D  E  *  G  R  N  *  R  P  *  I  E  E  S  W  R  R  I  I  R  V  R  R  R  *  R  *  R  G  G  K  *  *  F  T  G  K  Y  V  R  F  R  F   </first_frame>
            <second_frame>  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E  E  E  E  E  E  E  E  T  K  S  D  S  G  T  S  E  E  E  I  E  D  H  K  L  K  K  V  G  A  V  S  S  E  S  E  E  D  E  D  E  E  V  G  S  D  N  S  L  A  S  T  S  D  S  A  S  </second_frame>
            <third_frame>   K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  K  K  K  K  K  K  R  P  R  V  T  V  G  R  V  R  K  K  L  K  T  I  N  *  R  K  L  A  P  Y  H  Q  S  P  K  K  M  K  M  K  R  W  E  V  I  I  H  W  Q  V  R  P  I  P  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59872" stop="59303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEEEEETKSDSGTSEEEIEDHKLKKVGAVSSESEEDEDEEVGSDNSLASTSDSAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="64501" PGL_stop="65768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64501" e_stop="64695"/>
            <exon e_start="64770" e_stop="64958"/>
            <exon e_start="65082" e_stop="65244"/>
            <exon e_start="65328" e_stop="65768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64501" e_stop="64695" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="64696" i_stop="64769" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64770" e_stop="64958" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64959" i_stop="65081" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65082" e_stop="65244" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.973">
            <gDNA_intron_boundary i_start="65245" i_stop="65327" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="65328" e_stop="65768" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64501" stop="64695"/>
              <exon start="64770" stop="64958"/>
              <exon start="65082" stop="65155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65097" stop="65244"/>
              <exon start="65328" stop="65768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG : GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA : TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG : GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAATTTAAATT</gDNA_template>
            <first_frame> V  P  L  L  S  T  F  I  F  F  S  I  Y  Y  S  Q  S  N  A  L  S  S  N  Y  Y  A  K  T  C  P  Q  A  E  D  I  V  M  K  V  V  K  E  E  A  Q  K  D  R  T  V  P  A  T  L  L  R  M  H  F  H  D  C  F  L  R  :  G  C  D  A  S  I  L  L  S  S  K  G  K  N  T  A  E  K  D  A  P  P  N  G  S  L  H  G  F  Y  V  I  D  G  A  K  R  A  V  E  A  I  C  P  G  V  V  S  C  A  D  I  L  A  F  A  A  R  D  A  V  V  L  :  S  G  G  P  Y  W  K  V  P  K  G  R  K  D  G  R  I  S  R  A  S  E  T  T  L  L  P  K  P  T  F  N  I  S  Q  L  Q  Q  S  F  H  Q  R  G  L  S  L  D  D  L  V  A  L  L   : G  A  H  T  L  G  F  T  H  C  S  S  F  M  N  R  I  Y  N  F  N  A  T  H  D  I  D  P  T  L  R  P  S  F  A  A  S  L  K  G  I  C  P  L  K  N  R  A  K  N  A  G  I  S  N  D  P  S  P  T  T  F  D  N  T  H  Y  R  L  I  L  Q  K  K  S  L  L  F  S  D  H  S  L  L  T  I  P  K  T  K  S  L  V  Y  K  F  A  T  S  K  A  A  F  H  K  A  F  S  N  S  M  I  K  M  S  S  L  T  G  G  Q  E  V  R  K  N  C  R  V  V  N  *  L  I  I  I  N  S  N  L  I  F  L  C  N  L  N  </first_frame>
            <second_frame>  F  H  Y  *  A  H  L  F  F  S  P  S  T  I  L  K  A  M  H  L  V  P  I  T  M  Q  K  H  A  L  K  L  K  T  *  *  *  R  L  L  R  R  K  H  R  K  T  E  Q  C  P  L  H  F  *  G  C  I  S  M  I  V  S  Y  G :   V  V  M  L  L  F  C  *  A  P  R  G  K  T  P  R  K  R  T  R  L  L  M  V  L  C  T  D  S  M  L  L  M  V  Q  R  E  Q  L  K  L  Y  V  L  A  *  C  L  V  L  I  F  *  R  L  L  Q  E  M  Q  L  C  Y :   Q  A  D  L  T  G  R  C  L  K  E  E  K  T  D  E  Y  Q  E  L  V  K  Q  H  C  F  Q  S  L  H  S  T  F  L  N  S  N  K  A  S  I  K  E  V  S  H  *  T  T  W  W  L  S  *  :  V  R  T  L  *  D  L  P  I  A  H  H  L  *  T  V  Y  T  T  S  T  P  H  M  T  S  I  L  H  Y  V  H  R  L  Q  Q  A  *  R  A  Y  V  H  S  K  T  G  Q  K  T  Q  E  *  A  M  I  L  H  Q  Q  H  L  I  I  L  I  T  G  *  F  Y  K  R  K  V  C  Y  F  R  I  I  H  C  S  L  Y  Q  K  R  R  A  *  F  I  S  L  L  P  Q  K  Q  L  F  I  R  H  F  L  I  L  *  L  R  *  V  A  L  Q  E  V  K  K  L  E  K  I  A  G  L  *  T  N  *  L  L  L  I  L  I  *  Y  F  Y  V  I  *  I </second_frame>
            <third_frame>   S  I  I  E  H  I  Y  F  F  L  H  L  L  F  S  K  Q  C  T  *  F  Q  L  L  C  K  N  M  P  S  S  *  R  H  S  N  E  G  C  *  G  G  S  T  E  R  Q  N  S  A  R  Y  T  S  K  D  A  F  P  *  L  F  P  T   : G  L  *  C  F  Y  F  V  E  L  Q  G  E  K  H  R  G  K  G  R  A  S  *  W  F  F  A  R  I  L  C  Y  *  W  C  K  E  S  S  *  S  Y  M  S  W  R  S  V  L  C  *  Y  F  S  V  C  C  K  R  C  S  C  V   : I  R  R  T  L  L  E  G  A  *  R  K  K  R  R  T  N  I  K  S  *  *  N  N  T  A  S  K  A  Y  I  Q  H  F  S  T  P  T  K  L  P  S  K  R  S  L  T  R  R  L  G  G  S  L  R :   C  A  H  S  R  I  Y  P  L  L  I  I  Y  E  P  Y  I  Q  L  Q  R  H  T  *  H  R  S  Y  T  T  S  I  V  C  S  K  L  E  G  H  M  S  T  Q  K  Q  G  K  K  R  R  N  K  Q  *  S  F  T  N  N  I  *  *  Y  S  L  Q  A  N  S  T  K  E  K  F  V  I  F  G  S  F  I  A  H  Y  T  K  N  E  E  L  S  L  *  V  C  Y  L  K  S  S  F  S  *  G  I  F  *  F  Y  D  *  D  E  *  P  Y  R  R  S  R  S  *  K  K  L  Q  G  C  K  L  I  N  Y  Y  *  F  *  F  D  I  F  M  *  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64501" stop="64695"/>
                    <exon start="64770" stop="64958"/>
                    <exon start="65082" stop="65244"/>
                    <exon start="65328" stop="65722"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLLSTFIFFSIYYSQSNALSSNYYAKTCPQAEDIVMKVVKEEAQKDRTVPATLLRMHFHDCFLRGCDASILLSSKGKNTAEKDAPPNGSLHGFYVIDGAKRAVEAICPGVVSCADILAFAARDAVVLSGGPYWKVPKGRKDGRISRASETTLLPKPTFNISQLQQSFHQRGLSLDDLVALLGAHTLGFTHCSSFMNRIYNFNATHDIDPTLRPSFAASLKGICPLKNRAKNAGISNDPSPTTFDNTHYRLILQKKSLLFSDHSLLTIPKTKSLVYKFATSKAAFHKAFSNSMIKMSSLTGGQEVRKNCRVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="67443" PGL_stop="70900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67443" e_stop="67818"/>
            <exon e_start="68582" e_stop="68700"/>
            <exon e_start="69799" e_stop="69856"/>
            <exon e_start="69979" e_stop="70056"/>
            <exon e_start="70490" e_stop="70900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67443" e_stop="67818" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.826">
            <gDNA_intron_boundary i_start="67819" i_stop="68581" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68582" e_stop="68700" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68701" i_stop="69798" i_length="1098"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69799" e_stop="69856" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.833" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69857" i_stop="69978" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69979" e_stop="70056" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70057" i_stop="70489" i_length="433"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="70490" e_stop="70900" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67443" stop="67818"/>
              <exon start="68582" stop="68684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67451" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67561" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67575" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67575" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67603" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67606" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67607" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67608" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67608" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67613" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67613" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67616" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67617" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67621" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67633" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67633" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67633" stop="67818"/>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68582" stop="68700"/>
              <exon start="69799" stop="69856"/>
              <exon start="69979" stop="70056"/>
              <exon start="70490" stop="70900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG : TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG : GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG : TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG : GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</gDNA_template>
            <first_frame> I  D  *  F  *  E  N  P  K  M  A  P  I  C  N  L  L  L  S  R  I  *  F  *  N  Y  F  S  K  K  F  C  D  *  A  R  L  E  I  V  I  Y  S  P  Y  H  P  A  Y  S  G  S  H  T  H  K  I  L  S  S  T  Q  K  S  Y  S  S  M  A  F  A  H  C  F  L  T  V  P  A  D  T  T  N  F  H  T  A  T  S  I  L  T  R  P  F  S  S  S  V  S  S  S  F  S  S  S  N  L  K  T  C  S  L  S  N  F  H  K  N  L  R  I  G  L  K   : V  S  V  K  A  Q  A  S  E  D  S  A  A  A  D  A  F  T  N  F  K  H  V  L  L  P  I  T  D  R  N  P  Y  L  S  E  G  S  R  Q  :  A  A  A  T  A  A  A  M  A  K  K  Y  G  A  D  I  T  V  V   : V  I  D  E  K  G  K  E  A  Y  P  E  H  E  T  Q  L  A  S  I  R  W  H  L  A  E   : G  G  Y  Q  E  F  K  L  L  E  R  L  G  E  G  S  K  P  T  A  I  I  G  E  I  A  D  D  M  N  L  D  M  V  V  M  S  M  E  A  I  H  S  K  H  V  D  A  N  L  L  A  E  F  I  P  C  P  V  L  L  L  P  L  *  R  R  N  V  S  E  K  P  V  V  L  G  F  R  I  R  D  I  N  L  L  I  L  F  S  T  S  L  T  M  N  S  S  F  T  F  V  V  S  G  N  R  T  E  Q  T  S  W  F  I  A  I  C  F  L  I  M  W  R  D  M  N  M  L  F  T  L  *  S  I  H  L  </first_frame>
            <second_frame>  *  T  N  F  K  K  I  L  K  W  H  Q  F  V  T  F  C  Y  L  E  F  S  F  K  T  I  F  P  R  N  F  V  I  R  P  D  S  K  S  *  Y  I  V  L  I  I  L  H  I  L  E  A  T  L  I  K  S  C  R  V  P  R  N  L  I  H  P  W  H  L  L  T  A  S  L  L  S  R  L  I  L  Q  T  S  T  P  L  L  P  S  L  P  A  P  F  H  L  R  *  V  L  L  F  L  P  Q  T  S  K  L  A  A  S  L  I  S  T  R  I  *  E  S  D  S  K  :  Y  L  L  R  L  K  H  L  K  T  A  Q  Q  Q  M  L  S  P  T  S  S  M  Y  C  Y  Q  L  Q  T  G  I  L  I  S  L  R  V  Q  D  R :   L  Q  Q  L  P  L  L  W  Q  R  S  M  E  L  I  *  Q  L  L  :  L  L  M  K  R  G  K  K  H  T  Q  S  T  R  H  N  *  Q  A  S  D  G  I  *  L  K  :  V  D  I  K  N  S  S  C  *  S  G  *  V  K  E  A  S  Q  Q  P  L  L  V  K  L  L  M  I  *  T  W  I  W  *  L  *  A  W  K  L  S  I  P  S  M  *  M  Q  T  F  L  L  S  S  S  L  A  L  Y  C  F  C  P  Y  E  E  E  M  Y  L  K  S  Q  W  C  S  V  L  G  S  G  I  L  T  F  *  Y  C  S  L  L  H  *  P  *  T  Q  V  L  H  L  W  *  V  V  I  E  Q  N  K  Q  A  G  S  L  L  F  A  S  *  S  C  G  E  I  *  I  C  C  L  L  F  E  V  Y  T  C </second_frame>
            <third_frame>   R  L  I  L  R  K  S  *  N  G  T  N  L  *  P  F  V  I  *  N  L  V  L  K  L  F  F  Q  E  I  L  *  L  G  P  T  R  N  R  D  I  *  S  L  S  S  C  I  F  W  K  P  H  S  *  N  L  V  E  Y  P  E  I  L  F  I  H  G  I  C  S  L  L  P  Y  C  P  G  *  Y  Y  K  L  P  H  R  Y  F  H  P  Y  P  P  L  F  I  F  G  E  F  F  F  F  F  L  K  P  Q  N  L  Q  P  L  *  F  P  Q  E  F  E  N  R  T  Q  S :   I  C  *  G  S  S  I  *  R  Q  R  S  S  R  C  F  H  Q  L  Q  A  C  T  V  T  N  Y  R  P  E  S  L  S  L  *  G  F  K  T   : G  C  S  N  C  R  C  Y  G  K  E  V  W  S  *  Y  N  S  C  C :   Y  *  *  K  G  E  R  S  I  P  R  A  R  D  T  T  S  K  H  P  M  A  F  S  *  R :   W  I  S  R  I  Q  A  V  R  A  A  R  *  R  K  Q  A  N  S  H  Y  W  *  N  C  *  *  Y  E  L  G  Y  G  S  Y  E  H  G  S  Y  P  F  Q  A  C  R  C  K  P  S  C  *  V  H  P  L  P  C  I  A  F  A  P  M  K  K  K  C  I  *  K  A  S  G  A  R  F  *  D  Q  G  Y  *  P  F  D  T  V  L  Y  F  I  D  H  E  L  K  F  Y  I  C  G  K  W  *  *  N  R  T  N  K  L  V  H  C  Y  L  L  L  N  H  V  E  R  Y  E  Y  V  V  Y  S  L  K  Y  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67545" stop="67818"/>
                    <exon start="68582" stop="68700"/>
                    <exon start="69799" stop="69856"/>
                    <exon start="69979" stop="70056"/>
                    <exon start="70490" stop="70683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARLEIVIYSPYHPAYSGSHTHKILSSTQKSYSSMAFAHCFLTVPADTTNFHTATSILTRPFSSSVSSSFSSSNLKTCSLSNFHKNLRIGLKVSVKAQASEDSAAADAFTNFKHVLLPITDRNPYLSEGSRQAAATAAAMAKKYGADITVVVIDEKGKEAYPEHETQLASIRWHLAEGGYQEFKLLERLGEGSKPTAIIGEIADDMNLDMVVMSMEAIHSKHVDANLLAEFIPCPVLLLPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70684" stop="70887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNVSEKPVVLGFRIRDINLLILFSTSLTMNSSFTFVVSGNRTEQTSWFIAICFLIMWRDMNMLFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="73251" PGL_stop="71548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73251" e_stop="72987"/>
            <exon e_start="72917" e_stop="72622"/>
            <exon e_start="71576" e_stop="71548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.886" e_score="0.993"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73251" e_stop="72987" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72986" i_stop="72918" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="72917" e_stop="72622" e_length="296"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.886">
            <gDNA_intron_boundary i_start="72621" i_stop="71577" i_length="1045"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="71576" e_stop="71548" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73251" stop="72987"/>
              <exon start="72917" stop="72622"/>
              <exon start="71576" stop="71548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG : GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA : GTTCTAGCACCATTGCCAATTGGATTCTC</gDNA_template>
            <first_frame> H  *  *  *  D  M  V  K  D  Y  V  D  P  P  S  A  P  L  F  Q  T  A  E  L  Y  N  W  S  F  Y  R  A  L  I  A  E  F  V  A  T  L  L  F  L  Y  V  S  V  A  T  V  I  G  H  K  K  Q  L  G  P  C  D  G  V  G  L  V  G  I  A  W  A  F  G  G  M  I  F  V  L  V  Y  S  T  A  G  I  S   : G  G  H  I  N  P  A  V  T  F  G  L  L  L  A  R  K  V  S  L  L  R  A  V  A  Y  M  V  A  Q  C  L  G  A  I  C  G  V  G  L  V  K  G  V  M  K  D  D  Y  T  K  H  G  G  G  A  N  T  V  A  V  G  Y  S  T  G  A  A  L  G  A  E  I  I  A  T  F  L  L  M  Y  T  V  F  S  A  T  D  A  K  R  K  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F   </first_frame>
            <second_frame>  T  N  N  K  I  W  *  K  T  T  L  I  H  L  Q  L  R  C  F  K  Q  R  S  S  T  T  G  L  F  T  E  P  *  L  L  N  L  S  R  R  F  F  S  S  T  L  A  W  L  L  L  S  A  T  R  S  N  L  V  P  A  M  A  L  D  L  L  V  L  H  G  L  L  V  A  *  F  L  F  S  C  I  P  L  L  G  F  L  :  V  G  I  *  T  R  Q  *  R  L  G  Y  Y  *  Q  G  R  C  H  Y  *  E  R  W  R  I  W  W  R  S  A  *  E  P  F  A  A  L  V  *  *  K  V  *  *  R  M  I  I  R  S  M  V  A  V  L  I  P  S  Q  L  A  T  Q  R  A  Q  H  *  V  L  R  L  L  L  L  S  F  S  C  I  P  Y  F  P  P  P  T  P  K  G  K  H  V  I  H  T  S  Q :   F  *  H  H  C  Q  L  D  S  </second_frame>
            <third_frame>   L  I  I  R  Y  G  E  R  L  R  *  S  T  F  S  S  A  V  S  N  S  G  A  L  Q  L  V  F  L  Q  S  L  D  C  *  I  C  R  D  A  S  F  P  L  R  *  R  G  Y  C  Y  R  P  Q  E  A  T  W  S  L  R  W  R  W  T  C  W  Y  C  M  G  F  W  W  H  D  F  C  S  R  V  F  H  C  W  D  F  W :   W  A  Y  K  P  G  S  D  V  W  V  I  T  S  K  E  G  V  I  T  K  S  G  G  V  Y  G  G  A  V  L  R  S  H  L  R  R  W  F  S  E  R  C  D  E  G  *  L  Y  E  A  W  W  R  C  *  Y  R  R  S  W  L  L  N  G  R  S  I  R  C  *  D  Y  C  Y  F  P  S  H  V  Y  R  I  F  R  H  R  R  Q  K  E  S  T  *  F  T  R  P   : S  S  S  T  I  A  N  W  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73239" stop="72987"/>
                    <exon start="72917" stop="72622"/>
                    <exon start="71576" stop="71550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMVKDYVDPPSAPLFQTAELYNWSFYRALIAEFVATLLFLYVSVATVIGHKKQLGPCDGVGLVGIAWAFGGMIFVLVYSTAGISGGHINPAVTFGLLLARKVSLLRAVAYMVAQCLGAICGVGLVKGVMKDDYTKHGGGANTVAVGYSTGAALGAEIIATFLLMYTVFSATDAKRKARDSHVPVLAPLPIGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="77638" PGL_stop="79315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77638" e_stop="77778"/>
            <exon e_start="79268" e_stop="79315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.574" e_score="0.972"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="77638" e_stop="77778" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.574">
            <gDNA_intron_boundary i_start="77779" i_stop="79267" i_length="1489"/>
          </intron>
          <exon e_serial="2" e_score="0.688">
            <gDNA_exon_boundary e_start="79268" e_stop="79315" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77638" stop="77778"/>
              <exon start="79268" stop="79315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGACGCAGCTAGTGAGGTTCTAACCGAGGCGCGTCTATTGCTGGTTGAAAACTATTTCCAAACCCCCTCATTGGCCTGGGTTTTGCCTTGGCCATTGAGAATTTTTGAAAGGGCTTCCCTTCTGGGTTAAGCCCTCCA : TAAAAAAAATTGAAAATCATAGTGAAGTATAACAAACAAACAAAAAAA</gDNA_template>
            <first_frame> Q  *  R  S  *  *  G  S  N  R  G  A  S  I  A  G  *  K  L  F  P  N  P  L  I  G  L  G  F  A  L  A  I  E  N  F  *  K  G  F  P  S  G  L  S  P  P  :  *  K  K  L  K  I  I  V  K  Y  N  K  Q  T  K  K </first_frame>
            <second_frame>  N  D  A  A  S  E  V  L  T  E  A  R  L  L  L  V  E  N  Y  F  Q  T  P  S  L  A  W  V  L  P  W  P  L  R  I  F  E  R  A  S  L  L  G  *  A  L  H :   K  K  N  *  K  S  *  *  S  I  T  N  K  Q  K   </second_frame>
            <third_frame>   M  T  Q  L  V  R  F  *  P  R  R  V  Y  C  W  L  K  T  I  S  K  P  P  H  W  P  G  F  C  L  G  H  *  E  F  L  K  G  L  P  F  W  V  K  P  S   : I  K  K  I  E  N  H  S  E  V  *  Q  T  N  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030D08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="80247" PGL_stop="80563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80247" e_stop="80563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80247" e_stop="80563" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="80563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</gDNA_template>
            <first_frame> P  H  Y  F  F  L  F  S  R  I  Q  L  C  G  H  Q  A  V  I  T  G  D  S  L  L  L  L  L  H  L  H  P  H  L  I  H  H  F  L  Q  D  S  K  Q  W  K  K  C  G  K  I  L  I  F  L  H  F  K  I  T  L  R  I  T  L  E  I  I  I  I  F  M  I  I  I  I  K  L  L  I  L  V  E  *  F  Y  K  I  F  W  Q  G  L  L  L  M  N  L  H  Q  Q  Q  Q  Q  Q   </first_frame>
            <second_frame>  L  T  I  F  F  F  F  Q  E  S  N  Y  V  V  I  K  Q  *  *  Q  G  T  L  C  F  F  F  F  I  F  I  L  I  S  F  T  I  F  S  K  T  Q  N  N  G  R  S  V  E  R  Y  *  S  F  F  T  S  R  S  H  Y  E  L  L  *  R  S  S  S  S  S  *  S  *  S  S  S  C  *  F  W  W  N  D  F  T  R  F  F  G  K  A  F  C  *  *  I  F  T  S  S  S  S  S  S  </second_frame>
            <third_frame>   S  L  F  F  S  F  F  K  N  P  I  M  W  S  S  S  S  D  N  R  G  L  S  A  S  S  S  S  S  S  S  S  S  H  S  P  F  S  P  R  L  K  T  M  E  E  V  W  K  D  I  N  L  S  S  L  Q  D  H  T  T  N  Y  S  R  D  H  H  H  L  H  D  H  N  H  Q  A  A  N  F  G  G  M  I  L  Q  D  F  L  A  R  P  F  A  N  E  S  S  P  A  A  A  A  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80249" stop="80563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFFSFFKNPIMWSSSSDNRGLSASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLHDHNHQAANFGGMILQDFLARPFANESSPAAAAAA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80247" stop="80498"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHYFFLFSRIQLCGHQAVITGDSLLLLLHLHPHLIHHFLQDSKQWKKCGKILIFLHFKITLRITLEIIIIFMIIIIKLLILVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="94659" PGL_stop="84498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94659" e_stop="94450"/>
            <exon e_start="92567" e_stop="92155"/>
            <exon e_start="92021" e_stop="91912"/>
            <exon e_start="91722" e_stop="91651"/>
            <exon e_start="90962" e_stop="90856"/>
            <exon e_start="90754" e_stop="90661"/>
            <exon e_start="90464" e_stop="90360"/>
            <exon e_start="90271" e_stop="90080"/>
            <exon e_start="89714" e_stop="89691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.719" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94659" e_stop="94450" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92567" e_stop="92155" e_length="413"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.686">
            <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92021" e_stop="91912" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.590">
            <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91722" e_stop="91651" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="0.565">
            <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90962" e_stop="90856" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90754" e_stop="90661" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90360" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90271" e_stop="90080" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.719">
            <gDNA_intron_boundary i_start="90079" i_stop="89715" i_length="365"/>
          </intron>
          <exon e_serial="9" e_score="0.583">
            <gDNA_exon_boundary e_start="89714" e_stop="89691" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94659" stop="94450"/>
              <exon start="92567" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94540" stop="94450"/>
              <exon start="92567" stop="92155"/>
              <exon start="92021" stop="91983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94511" stop="94450"/>
              <exon start="92567" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92453" stop="92155"/>
              <exon start="92021" stop="91912"/>
              <exon start="91722" stop="91651"/>
              <exon start="90962" stop="90860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92015" stop="91912"/>
              <exon start="91722" stop="91651"/>
              <exon start="90962" stop="90856"/>
              <exon start="90754" stop="90661"/>
              <exon start="90464" stop="90360"/>
              <exon start="90271" stop="90080"/>
              <exon start="89714" stop="89691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350311" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG : GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG : AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT : GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT : CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG : GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG : GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG : GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA : ATAAATATATGAAAAGAAGTATAG</gDNA_template>
            <first_frame> Y  P  E  T  R  E  P  L  E  H  L  E  D  A  L  R  R  S  Y  L  L  V  N  S  C  Q  D  R  S  Y  L  Y  L  L  A  M  G  W  N  I  V  Y  Q  F  R  R  A  Q  N  E  I  D  Q  Y  L  K  I  I  P  L  I  T  L  V  D  N  A  R  V  R  :  E  R  L  E  Y  I  E  M  D  Q  R  E  Y  T  L  E  V  E  D  M  K  V  Q  E  V  I  M  K  P  E  P  S  K  D  D  T  I  I  L  T  K  N  L  S  C  S  Y  P  R  V  P  I  N  E  A  I  Q  K  E  N  E  K  L  Q  L  E  L  Q  R  S  Q  A  N  L  D  V  G  Q  C  E  F  I  Q  H  L  L  D  V  T  E  V  V  A  N  N  S  L  S  L  K  S  S  P  A  K  P  L  K  K  L  D  Q  S  Y  S  N  V  D  T  E  K  V  Y  Y  D  D  Y  A  K  S  D  E  K  Q  T  T  S  R :   N  T  S  S  V  T  S  R  H  D  L  L  S  S  K  G  S  H  Q  Y  E  E  W  H  S  D  L  L  G  C  C  S  E  P  L  L   : C  I  K  T  L  F  F  P  C  G  T  F  S  R  I  A  S  V  A  A  D  R  H  I   : S  S  A  D  A  C  N  E  L  M  A  Y  S  L  I  L  S  C  C  C  Y  T  C  C  I  R  K  K  L  R  K  K  L  N  I  K  :  G  G  C  V  D  D  F  L  S  H  L  M  C  C  C  C  A  L  V  Q  E  L  R  E  V  K  I  R  G  T  H   : G  I  E  K  T  K  I  S  P  P  T  T  Q  F  M  E  S  *  E  A  K  P  G  F  F  S  T  K  Y  Q  K  A  L  Y  G   : G  S  V  C  I  I  D  P  E  L  F  I  R  L  H  G  Y  W  *  L  Y  M  Y  V  M  *  E  S  V  L  C  G  V  H  A  G  I  L  W  C  N  Y  G  *  I  S  *  R  I  F  C  E  N  K  R  *  Q  L  L  G  C  C  S  S   : N  K  Y  M  K  R  S  I  </first_frame>
            <second_frame>  I  R  K  P  E  S  H  W  N  I  L  K  M  H  *  G  G  L  I  Y  W  S  T  A  V  R  T  G  A  T  F  I  C  W  L  W  G  G  T  L  Y  T  S  F  V  G  L  R  T  R  L  T  N  T  *  R  L  F  L  L  S  L  W  L  I  M  L  E  S  G :   K  G  W  N  I  L  K  W  T  S  V  N  T  H  W  R  L  K  T  *  R  C  K  K  *  L  *  N  Q  S  L  L  K  M  I  Q  *  Y  *  R  R  I  F  P  V  L  T  Q  E  C  L  S  M  R  Q  F  K  K  K  M  R  N  S  N  *  N  Y  S  A  R  K  L  I  *  M  *  V  S  V  N  S  F  S  I  F  W  M  S  Q  K  *  L  P  I  T  L  Y  H  *  R  V  H  L  P  N  L  S  K  S  W  I  R  V  T  R  M  L  I  L  R  R  Y  I  M  T  I  M  L  K  V  M  R  N  R  Q  L  Q   : E  T  L  H  Q  L  H  Q  D  M  T  C  F  P  Q  R  V  H  I  N  M  K  S  G  I  Q  I  C  W  A  A  V  Q  N  L  S  Y  :  V  L  K  P  F  S  F  L  V  V  H  F  L  E  L  P  V  L  L  R  T  G  I  Y  :  L  Q  R  M  L  V  M  N  *  W  L  I  P  *  Y  C  P  A  V  V  T  H  V  A  S  E  R  S  F  G  K  S  *  T  S  R :   E  V  V  L  M  I  F  F  L  I  *  C  A  V  A  V  L  L  S  K  N  C  A  K  S  R  Y  V  G  H  M  :  V  *  R  R  R  K  *  A  L  Q  P  L  N  S  W  N  P  R  K  L  N  L  A  F  L  A  Q  N  I  R  K  H  Y  M  E  :  V  R  C  V  *  L  T  Q  S  C  S  F  V  Y  M  V  T  G  D  Y  T  C  M  *  C  K  N  L  F  Y  V  V  Y  M  Q  E  Y  Y  G  V  T  M  D  E  Y  H  D  V  F  F  V  K  I  K  D  N  N  Y  *  V  V  A  V  P  :  I  N  I  *  K  E  V  * </second_frame>
            <third_frame>   S  G  N  P  R  A  I  G  T  S  *  R  C  I  E  E  V  L  F  I  G  Q  Q  L  S  G  Q  E  L  P  L  S  V  G  Y  G  V  E  H  C  I  P  V  S  *  G  S  E  R  D  *  P  I  L  E  D  Y  S  S  Y  H  S  G  *  *  C  S  S  Q   : G  K  V  G  I  Y  *  N  G  P  A  *  I  H  T  G  G  *  R  H  E  G  A  R  S  D  Y  E  T  R  A  F  *  R  *  Y  N  N  I  N  E  E  S  F  L  F  L  P  K  S  A  Y  Q  *  G  N  S  K  R  K  *  E  T  P  T  R  T  T  A  L  A  S  *  F  R  C  R  S  V  *  I  H  S  A  S  S  G  C  H  R  S  S  C  Q  *  L  S  I  I  E  E  F  T  C  Q  T  S  Q  K  V  G  S  E  L  L  E  C  *  Y  *  E  G  I  L  *  R  L  C  *  K  *  *  E  T  D  N  F  K  :  K  H  F  I  S  Y  I  K  T  *  P  A  F  L  K  G  F  T  S  I  *  R  V  A  F  R  S  A  G  L  L  F  R  T  S  L  M :   Y  *  N  P  F  L  S  L  W  Y  I  F  *  N  C  Q  C  C  C  G  Q  A  Y  I :   F  S  G  C  L  *  *  I  N  G  L  F  L  D  T  V  L  L  L  L  H  M  L  H  Q  K  E  A  S  E  K  A  K  H  Q   : G  R  L  C  *  *  F  S  F  S  F  D  V  L  L  L  C  S  C  P  R  I  A  R  S  Q  D  T  W  D  T  W :   Y  R  E  D  E  N  K  P  S  N  H  S  I  H  G  I  L  G  S  *  T  W  L  F  *  H  K  I  S  E  S  T  I  W  R :   F  G  V  Y  N  *  P  R  V  V  H  S  F  T  W  L  L  V  T  I  H  V  C  D  V  R  I  C  S  M  W  C  T  C  R  N  I  M  V  *  L  W  M  N  I  M  T  Y  F  L  *  K  *  K  I  T  T  T  R  L  L  Q  F  Q :   *  I  Y  E  K  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94659" stop="94450"/>
                    <exon start="92567" stop="92155"/>
                    <exon start="92021" stop="91912"/>
                    <exon start="91722" stop="91651"/>
                    <exon start="90962" stop="90856"/>
                    <exon start="90754" stop="90661"/>
                    <exon start="90464" stop="90412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPETREPLEHLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRRAQNEIDQYLKIIPLITLVDNARVRERLEYIEMDQREYTLEVEDMKVQEVIMKPEPSKDDTIILTKNLSCSYPRVPINEAIQKENEKLQLELQRSQANLDVGQCEFIQHLLDVTEVVANNSLSLKSSPAKPLKKLDQSYSNVDTEKVYYDDYAKSDEKQTTSRNTSSVTSRHDLLSSKGSHQYEEWHSDLLGCCSEPLLCIKTLFFPCGTFSRIASVAADRHISSADACNELMAYSLILSCCCYTCCIRKKLRKKLNIKGGCVDDFLSHLMCCCCALVQELREVKIRGTHGIEKTKISPPTTQFMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94659" e_stop="94450"/>
            <exon e_start="92567" e_stop="92155"/>
            <exon e_start="92021" e_stop="91912"/>
            <exon e_start="91722" e_stop="91651"/>
            <exon e_start="90962" e_stop="90856"/>
            <exon e_start="90754" e_stop="90661"/>
            <exon e_start="90464" e_stop="90360"/>
            <exon e_start="90271" e_stop="90080"/>
            <exon e_start="89163" e_stop="89142"/>
            <exon e_start="86056" e_stop="86048"/>
            <exon e_start="85441" e_stop="85432"/>
            <exon e_start="84859" e_stop="84817"/>
            <exon e_start="84513" e_stop="84498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.046" acc_prob="0.951" e_score="0.818"/>
          <exon-intron don_prob="0.507" acc_prob="0.196" e_score="0.667"/>
          <exon-intron don_prob="0.454" acc_prob="0.986" e_score="0.600"/>
          <exon-intron don_prob="0.000" acc_prob="0.881" e_score="0.512"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94659" e_stop="94450" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94449" i_stop="92568" i_length="1882"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92567" e_stop="92155" e_length="413"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.686">
            <gDNA_intron_boundary i_start="92154" i_stop="92022" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92021" e_stop="91912" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.590">
            <gDNA_intron_boundary i_start="91911" i_stop="91723" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91722" e_stop="91651" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="0.565">
            <gDNA_intron_boundary i_start="91650" i_stop="90963" i_length="688"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90962" e_stop="90856" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="90855" i_stop="90755" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90754" e_stop="90661" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90660" i_stop="90465" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90360" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90359" i_stop="90272" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90271" e_stop="90080" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90079" i_stop="89164" i_length="916"/>
          </intron>
          <exon e_serial="9" e_score="0.818">
            <gDNA_exon_boundary e_start="89163" e_stop="89142" e_length="22"/>
          </exon>
          <intron i_serial="9" don_prob="0.046" acc_prob="0.951">
            <gDNA_intron_boundary i_start="89141" i_stop="86057" i_length="3085"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="86056" e_stop="86048" e_length="9"/>
          </exon>
          <intron i_serial="10" don_prob="0.507" acc_prob="0.196">
            <gDNA_intron_boundary i_start="86047" i_stop="85442" i_length="606"/>
          </intron>
          <exon e_serial="11" e_score="0.600">
            <gDNA_exon_boundary e_start="85441" e_stop="85432" e_length="10"/>
          </exon>
          <intron i_serial="11" don_prob="0.454" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85431" i_stop="84860" i_length="572"/>
          </intron>
          <exon e_serial="12" e_score="0.512">
            <gDNA_exon_boundary e_start="84859" e_stop="84817" e_length="43"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="84816" i_stop="84514" i_length="303"/>
          </intron>
          <exon e_serial="13" e_score="0.625">
            <gDNA_exon_boundary e_start="84513" e_stop="84498" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94659" stop="94450"/>
              <exon start="92567" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94540" stop="94450"/>
              <exon start="92567" stop="92155"/>
              <exon start="92021" stop="91983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94511" stop="94450"/>
              <exon start="92567" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92453" stop="92155"/>
              <exon start="92021" stop="91912"/>
              <exon start="91722" stop="91651"/>
              <exon start="90962" stop="90860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91672" stop="91651"/>
              <exon start="90962" stop="90856"/>
              <exon start="90754" stop="90661"/>
              <exon start="90464" stop="90360"/>
              <exon start="90271" stop="90080"/>
              <exon start="89163" stop="89142"/>
              <exon start="86056" stop="86048"/>
              <exon start="85441" stop="85432"/>
              <exon start="84859" stop="84817"/>
              <exon start="84513" stop="84498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG : GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG : AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT : GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT : CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG : GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG : GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG : GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA : AAAACAAAAAATAAAAAATAAT : GGAAAAACA : AACCAAAAGG : AAAACAGGGATGTTAGGTTGCAAGGCCGCAATTAGCCCAATAG : GGGAGGGGATACTAAA</gDNA_template>
            <first_frame> Y  P  E  T  R  E  P  L  E  H  L  E  D  A  L  R  R  S  Y  L  L  V  N  S  C  Q  D  R  S  Y  L  Y  L  L  A  M  G  W  N  I  V  Y  Q  F  R  R  A  Q  N  E  I  D  Q  Y  L  K  I  I  P  L  I  T  L  V  D  N  A  R  V  R  :  E  R  L  E  Y  I  E  M  D  Q  R  E  Y  T  L  E  V  E  D  M  K  V  Q  E  V  I  M  K  P  E  P  S  K  D  D  T  I  I  L  T  K  N  L  S  C  S  Y  P  R  V  P  I  N  E  A  I  Q  K  E  N  E  K  L  Q  L  E  L  Q  R  S  Q  A  N  L  D  V  G  Q  C  E  F  I  Q  H  L  L  D  V  T  E  V  V  A  N  N  S  L  S  L  K  S  S  P  A  K  P  L  K  K  L  D  Q  S  Y  S  N  V  D  T  E  K  V  Y  Y  D  D  Y  A  K  S  D  E  K  Q  T  T  S  R :   N  T  S  S  V  T  S  R  H  D  L  L  S  S  K  G  S  H  Q  Y  E  E  W  H  S  D  L  L  G  C  C  S  E  P  L  L   : C  I  K  T  L  F  F  P  C  G  T  F  S  R  I  A  S  V  A  A  D  R  H  I   : S  S  A  D  A  C  N  E  L  M  A  Y  S  L  I  L  S  C  C  C  Y  T  C  C  I  R  K  K  L  R  K  K  L  N  I  K  :  G  G  C  V  D  D  F  L  S  H  L  M  C  C  C  C  A  L  V  Q  E  L  R  E  V  K  I  R  G  T  H   : G  I  E  K  T  K  I  S  P  P  T  T  Q  F  M  E  S  *  E  A  K  P  G  F  F  S  T  K  Y  Q  K  A  L  Y  G   : G  S  V  C  I  I  D  P  E  L  F  I  R  L  H  G  Y  W  *  L  Y  M  Y  V  M  *  E  S  V  L  C  G  V  H  A  G  I  L  W  C  N  Y  G  *  I  S  *  R  I  F  C  E  N  K  R  *  Q  L  L  G  C  C  S  S   : K  N  K  K  *  K  I  M :   E  K  Q :   T  K  R  :  K  T  G  M  L  G  C  K  A  A  I  S  P  I   : G  E  G  I  L   </first_frame>
            <second_frame>  I  R  K  P  E  S  H  W  N  I  L  K  M  H  *  G  G  L  I  Y  W  S  T  A  V  R  T  G  A  T  F  I  C  W  L  W  G  G  T  L  Y  T  S  F  V  G  L  R  T  R  L  T  N  T  *  R  L  F  L  L  S  L  W  L  I  M  L  E  S  G :   K  G  W  N  I  L  K  W  T  S  V  N  T  H  W  R  L  K  T  *  R  C  K  K  *  L  *  N  Q  S  L  L  K  M  I  Q  *  Y  *  R  R  I  F  P  V  L  T  Q  E  C  L  S  M  R  Q  F  K  K  K  M  R  N  S  N  *  N  Y  S  A  R  K  L  I  *  M  *  V  S  V  N  S  F  S  I  F  W  M  S  Q  K  *  L  P  I  T  L  Y  H  *  R  V  H  L  P  N  L  S  K  S  W  I  R  V  T  R  M  L  I  L  R  R  Y  I  M  T  I  M  L  K  V  M  R  N  R  Q  L  Q   : E  T  L  H  Q  L  H  Q  D  M  T  C  F  P  Q  R  V  H  I  N  M  K  S  G  I  Q  I  C  W  A  A  V  Q  N  L  S  Y  :  V  L  K  P  F  S  F  L  V  V  H  F  L  E  L  P  V  L  L  R  T  G  I  Y  :  L  Q  R  M  L  V  M  N  *  W  L  I  P  *  Y  C  P  A  V  V  T  H  V  A  S  E  R  S  F  G  K  S  *  T  S  R :   E  V  V  L  M  I  F  F  L  I  *  C  A  V  A  V  L  L  S  K  N  C  A  K  S  R  Y  V  G  H  M  :  V  *  R  R  R  K  *  A  L  Q  P  L  N  S  W  N  P  R  K  L  N  L  A  F  L  A  Q  N  I  R  K  H  Y  M  E  :  V  R  C  V  *  L  T  Q  S  C  S  F  V  Y  M  V  T  G  D  Y  T  C  M  *  C  K  N  L  F  Y  V  V  Y  M  Q  E  Y  Y  G  V  T  M  D  E  Y  H  D  V  F  F  V  K  I  K  D  N  N  Y  *  V  V  A  V  P  :  K  T  K  N  K  K  *   : W  K  N   : K  P  K  G :   K  Q  G  C  *  V  A  R  P  Q  L  A  Q  *  :  G  R  G  Y  *  </second_frame>
            <third_frame>   S  G  N  P  R  A  I  G  T  S  *  R  C  I  E  E  V  L  F  I  G  Q  Q  L  S  G  Q  E  L  P  L  S  V  G  Y  G  V  E  H  C  I  P  V  S  *  G  S  E  R  D  *  P  I  L  E  D  Y  S  S  Y  H  S  G  *  *  C  S  S  Q   : G  K  V  G  I  Y  *  N  G  P  A  *  I  H  T  G  G  *  R  H  E  G  A  R  S  D  Y  E  T  R  A  F  *  R  *  Y  N  N  I  N  E  E  S  F  L  F  L  P  K  S  A  Y  Q  *  G  N  S  K  R  K  *  E  T  P  T  R  T  T  A  L  A  S  *  F  R  C  R  S  V  *  I  H  S  A  S  S  G  C  H  R  S  S  C  Q  *  L  S  I  I  E  E  F  T  C  Q  T  S  Q  K  V  G  S  E  L  L  E  C  *  Y  *  E  G  I  L  *  R  L  C  *  K  *  *  E  T  D  N  F  K  :  K  H  F  I  S  Y  I  K  T  *  P  A  F  L  K  G  F  T  S  I  *  R  V  A  F  R  S  A  G  L  L  F  R  T  S  L  M :   Y  *  N  P  F  L  S  L  W  Y  I  F  *  N  C  Q  C  C  C  G  Q  A  Y  I :   F  S  G  C  L  *  *  I  N  G  L  F  L  D  T  V  L  L  L  L  H  M  L  H  Q  K  E  A  S  E  K  A  K  H  Q   : G  R  L  C  *  *  F  S  F  S  F  D  V  L  L  L  C  S  C  P  R  I  A  R  S  Q  D  T  W  D  T  W :   Y  R  E  D  E  N  K  P  S  N  H  S  I  H  G  I  L  G  S  *  T  W  L  F  *  H  K  I  S  E  S  T  I  W  R :   F  G  V  Y  N  *  P  R  V  V  H  S  F  T  W  L  L  V  T  I  H  V  C  D  V  R  I  C  S  M  W  C  T  C  R  N  I  M  V  *  L  W  M  N  I  M  T  Y  F  L  *  K  *  K  I  T  T  T  R  L  L  Q  F  Q :   K  Q  K  I  K  N  N  :  G  K  T  :  N  Q  K   : E  N  R  D  V  R  L  Q  G  R  N  *  P  N  R :   G  G  D  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94659" stop="94450"/>
                    <exon start="92567" stop="92155"/>
                    <exon start="92021" stop="91912"/>
                    <exon start="91722" stop="91651"/>
                    <exon start="90962" stop="90856"/>
                    <exon start="90754" stop="90661"/>
                    <exon start="90464" stop="90412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPETREPLEHLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRRAQNEIDQYLKIIPLITLVDNARVRERLEYIEMDQREYTLEVEDMKVQEVIMKPEPSKDDTIILTKNLSCSYPRVPINEAIQKENEKLQLELQRSQANLDVGQCEFIQHLLDVTEVVANNSLSLKSSPAKPLKKLDQSYSNVDTEKVYYDDYAKSDEKQTTSRNTSSVTSRHDLLSSKGSHQYEEWHSDLLGCCSEPLLCIKTLFFPCGTFSRIASVAADRHISSADACNELMAYSLILSCCCYTCCIRKKLRKKLNIKGGCVDDFLSHLMCCCCALVQELREVKIRGTHGIEKTKISPPTTQFMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="95877" PGL_stop="94706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95877" e_stop="95844"/>
            <exon e_start="95491" e_stop="95406"/>
            <exon e_start="95239" e_stop="94706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.454" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.930"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="95877" e_stop="95844" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.454" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95843" i_stop="95492" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="95491" e_stop="95406" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95405" i_stop="95240" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.906">
            <gDNA_exon_boundary e_start="95239" e_stop="94706" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95877" stop="95844"/>
              <exon start="95491" stop="95406"/>
              <exon start="95239" stop="94706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95876" stop="95844"/>
              <exon start="95491" stop="95406"/>
              <exon start="95239" stop="94770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95876" stop="95844"/>
              <exon start="95491" stop="95406"/>
              <exon start="95239" stop="94918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGCTCCCAGACAACAGACACCGAAGAGAAAC : GTTTAGCTTAGCTTGAAAGGAATGCTGAAAGGACTGCGGGATTGCGGTGGAGTACAGTGAGGTTAACGGCGTCACCGTTAATTCAG : CTGAAATACCGATAGCTGCACTTCTATTTCAACGGGATCTGTTGGAAGCAATTCTTTGGGGTGCATTCTGGTTACATATGATGCTTTTGAGTGTATTTTGATGGTACTGCATGTCTGCGACATTGACTGGAACTTGAATCTGATGAATGATGCATTATGGAAGTTCTATAGAAGTCTATATTGAGTCGGCAATGTTGTTTTCTCCGAGTTTTACCTAATGAATTCAACTTGCTTGATTAAAAGAGCTGGTGGAGACAGCTTGATTTTTTTGTTAAAAGTTTAGAGCGAGTTGCTGTTTTTATACTGGCCCTCCTGCTGATCTGTGCTTGTTATTGAATTGAAATTTAGAGAGAGTTTCGTGTGAATAATCTAGGATTTACTTATGGCGTCATTGGACCATTTTGGGGATATTGCAAATATTGCACAGCTTACTGGAATCGATGCGGTGAGGCTAATTGGGATGATTGTGAAAGCTGCTGCTACAGCTCGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATCTCAAGCT</gDNA_template>
            <first_frame> R  S  S  Q  T  T  D  T  E  E  K   : R  L  A  *  L  E  R  N  A  E  R  T  A  G  L  R  W  S  T  V  R  L  T  A  S  P  L  I  Q  :  L  K  Y  R  *  L  H  F  Y  F  N  G  I  C  W  K  Q  F  F  G  V  H  S  G  Y  I  *  C  F  *  V  Y  F  D  G  T  A  C  L  R  H  *  L  E  L  E  S  D  E  *  C  I  M  E  V  L  *  K  S  I  L  S  R  Q  C  C  F  L  R  V  L  P  N  E  F  N  L  L  D  *  K  S  W  W  R  Q  L  D  F  F  V  K  S  L  E  R  V  A  V  F  I  L  A  L  L  L  I  C  A  C  Y  *  I  E  I  *  R  E  F  R  V  N  N  L  G  F  T  Y  G  V  I  G  P  F  W  G  Y  C  K  Y  C  T  A  Y  W  N  R  C  G  E  A  N  W  D  D  C  E  S  C  C  Y  S  S  D  A  Q  E  E  L  Q  A  V  C  T  A  S  Q  A </first_frame>
            <second_frame>  G  A  P  R  Q  Q  T  P  K  R  N  :  V  *  L  S  L  K  G  M  L  K  G  L  R  D  C  G  G  V  Q  *  G  *  R  R  H  R  *  F  S :   *  N  T  D  S  C  T  S  I  S  T  G  S  V  G  S  N  S  L  G  C  I  L  V  T  Y  D  A  F  E  C  I  L  M  V  L  H  V  C  D  I  D  W  N  L  N  L  M  N  D  A  L  W  K  F  Y  R  S  L  Y  *  V  G  N  V  V  F  S  E  F  Y  L  M  N  S  T  C  L  I  K  R  A  G  G  D  S  L  I  F  L  L  K  V  *  S  E  L  L  F  L  Y  W  P  S  C  *  S  V  L  V  I  E  L  K  F  R  E  S  F  V  *  I  I  *  D  L  L  M  A  S  L  D  H  F  G  D  I  A  N  I  A  Q  L  T  G  I  D  A  V  R  L  I  G  M  I  V  K  A  A  A  T  A  R  M  H  K  K  N  C  R  Q  F  A  Q  H  L  K   </second_frame>
            <third_frame>   E  L  P  D  N  R  H  R  R  E  T :   F  S  L  A  *  K  E  C  *  K  D  C  G  I  A  V  E  Y  S  E  V  N  G  V  T  V  N  S   : A  E  I  P  I  A  A  L  L  F  Q  R  D  L  L  E  A  I  L  W  G  A  F  W  L  H  M  M  L  L  S  V  F  *  W  Y  C  M  S  A  T  L  T  G  T  *  I  *  *  M  M  H  Y  G  S  S  I  E  V  Y  I  E  S  A  M  L  F  S  P  S  F  T  *  *  I  Q  L  A  *  L  K  E  L  V  E  T  A  *  F  F  C  *  K  F  R  A  S  C  C  F  Y  T  G  P  P  A  D  L  C  L  L  L  N  *  N  L  E  R  V  S  C  E  *  S  R  I  Y  L  W  R  H  W  T  I  L  G  I  L  Q  I  L  H  S  L  L  E  S  M  R  *  G  *  L  G  *  L  *  K  L  L  L  Q  L  G  C  T  R  R  I  A  G  S  L  H  S  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030D08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="105670" PGL_stop="106116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105670" e_stop="106116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="105670" e_stop="106116" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105670" stop="105991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105670" stop="105975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105671" stop="106116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAATTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCAAGAATGGAGAGTGGTGAGCGAGATTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGATTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  V  S  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  T  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  R  I  I  H  F  C  V  *  S  E  R  D  E  Q  E  W  R  V  V  S  E  I  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  D  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  Y  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  Q  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  I  E  L  Y  T  S  V  Y  K  A  R  E  T  S  K  N  G  E  W  *  A  R  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  W  I  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  C  I  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  *  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  G  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030D08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="113233" PGL_stop="115963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113233" e_stop="113251"/>
            <exon e_start="113351" e_stop="113474"/>
            <exon e_start="115186" e_stop="115371"/>
            <exon e_start="115516" e_stop="115603"/>
            <exon e_start="115802" e_stop="115858"/>
            <exon e_start="115957" e_stop="115963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.932" e_score="0.947"/>
          <exon-intron don_prob="0.996" acc_prob="0.962" e_score="0.984"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.971" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.267" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="113233" e_stop="113251" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.932">
            <gDNA_intron_boundary i_start="113252" i_stop="113350" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="113351" e_stop="113474" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.962">
            <gDNA_intron_boundary i_start="113475" i_stop="115185" i_length="1711"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="115186" e_stop="115371" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115372" i_stop="115515" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115516" e_stop="115603" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.907">
            <gDNA_intron_boundary i_start="115604" i_stop="115801" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115802" e_stop="115858" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.267" acc_prob="0.998">
            <gDNA_intron_boundary i_start="115859" i_stop="115956" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115957" e_stop="115963" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113233" stop="113251"/>
              <exon start="113351" stop="113474"/>
              <exon start="115186" stop="115371"/>
              <exon start="115516" stop="115603"/>
              <exon start="115802" stop="115858"/>
              <exon start="115957" stop="115963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113233" stop="113251"/>
              <exon start="113351" stop="113474"/>
              <exon start="115186" stop="115371"/>
              <exon start="115516" stop="115587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAATACTATGAACTAT : ATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATT : GTATCTCCTTTGTACAGTGGGTTCAGTGTACATTAAATCAAAGGAGGCTCCTGCCAAGGATATTCTCAAAGATCTGGTGGAAATGTGCCGTAGCATACAACATCCATTACGTGGTCTCTTCCTAAGGAGTTACCTTTCACAAGTCAGTAGGGATAAATTGCCTGATATAGGATCTGAATATGAAGG : GGATGCTGACACTGTCATGGATGCAGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGAATGCAACATCAG : GGACATGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTTCGCGATCTT : GTGGGGA</gDNA_template>
            <first_frame> H  K  Y  Y  E  L   : Y  M  R  A  F  D  E  L  R  K  L  E  I  F  F  R  E  E  T  N  R  G  C  S  I  V  E  L  Y  E  L  V  Q  H  A  G  N  I  L  P  R  L :   Y  L  L  C  T  V  G  S  V  Y  I  K  S  K  E  A  P  A  K  D  I  L  K  D  L  V  E  M  C  R  S  I  Q  H  P  L  R  G  L  F  L  R  S  Y  L  S  Q  V  S  R  D  K  L  P  D  I  G  S  E  Y  E  G :   D  A  D  T  V  M  D  A  V  E  F  V  L  Q  N  F  T  E  M  N  K  L  W  V  R  M  Q  H  Q  :  G  H  A  R  E  K  E  K  R  E  K  E  R  S  E  L  R  D  L  :  V  G  </first_frame>
            <second_frame>  T  N  T  M  N  Y  :  I  C  A  H  L  M  N  *  G  N  *  R  S  S  S  E  R  R  Q  I  V  A  A  P  L  L  S  C  M  S  S  C  S  T  L  A  T  F  C  L  D   : C  I  S  F  V  Q  W  V  Q  C  T  L  N  Q  R  R  L  L  P  R  I  F  S  K  I  W  W  K  C  A  V  A  Y  N  I  H  Y  V  V  S  S  *  G  V  T  F  H  K  S  V  G  I  N  C  L  I  *  D  L  N  M  K   : G  M  L  T  L  S  W  M  Q  *  N  S  C  S  K  I  S  Q  K  *  T  N  F  G  C  E  C  N  I  R :   D  M  H  G  K  R  K  N  V  K  K  K  G  A  S  F  A  I  L :   W  G </second_frame>
            <third_frame>   Q  I  L  *  T  I :   Y  A  R  I  *  *  I  E  E  I  R  D  L  L  Q  R  G  D  K  S  W  L  L  H  C  *  V  V  *  A  R  A  A  R  W  Q  H  F  A  *  I  :  V  S  P  L  Y  S  G  F  S  V  H  *  I  K  G  G  S  C  Q  G  Y  S  Q  R  S  G  G  N  V  P  *  H  T  T  S  I  T  W  S  L  P  K  E  L  P  F  T  S  Q  *  G  *  I  A  *  Y  R  I  *  I  *  R  :  G  C  *  H  C  H  G  C  S  R  I  R  A  P  K  F  H  R  N  E  Q  T  L  G  A  N  A  T  S   : G  T  C  T  G  K  G  K  T  *  K  R  K  E  R  A  S  R  S   : C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113233" stop="113251"/>
                    <exon start="113351" stop="113474"/>
                    <exon start="115186" stop="115371"/>
                    <exon start="115516" stop="115603"/>
                    <exon start="115802" stop="115858"/>
                    <exon start="115957" stop="115962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKYYELYMRAFDELRKLEIFFREETNRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILKDLVEMCRSIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVLQNFTEMNKLWVRMQHQGHAREKEKREKERSELRDLVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="117102" PGL_stop="122134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117102" e_stop="117129"/>
            <exon e_start="117206" e_stop="117265"/>
            <exon e_start="117920" e_stop="118036"/>
            <exon e_start="118305" e_stop="118544"/>
            <exon e_start="118628" e_stop="118693"/>
            <exon e_start="118814" e_stop="118903"/>
            <exon e_start="119810" e_stop="119899"/>
            <exon e_start="120171" e_stop="120260"/>
            <exon e_start="120532" e_stop="120600"/>
            <exon e_start="120680" e_stop="120760"/>
            <exon e_start="120869" e_stop="120976"/>
            <exon e_start="121066" e_stop="121169"/>
            <exon e_start="121306" e_stop="121419"/>
            <exon e_start="121511" e_stop="122134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117102" e_stop="117129" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.989">
            <gDNA_intron_boundary i_start="117130" i_stop="117205" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117206" e_stop="117265" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="117266" i_stop="117919" i_length="654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117920" e_stop="118036" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.973">
            <gDNA_intron_boundary i_start="118037" i_stop="118304" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118305" e_stop="118544" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.914" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118545" i_stop="118627" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118628" e_stop="118693" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.651" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118694" i_stop="118813" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118814" e_stop="118903" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118904" i_stop="119809" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119810" e_stop="119899" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="119900" i_stop="120170" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="120171" e_stop="120260" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.738">
            <gDNA_intron_boundary i_start="120261" i_stop="120531" i_length="271"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120532" e_stop="120600" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="120601" i_stop="120679" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="120680" e_stop="120760" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="120761" i_stop="120868" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="120869" e_stop="120976" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120977" i_stop="121065" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="121066" e_stop="121169" e_length="104"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="121170" i_stop="121305" i_length="136"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="121306" e_stop="121419" e_length="114"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="121420" i_stop="121510" i_length="91"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="121511" e_stop="122134" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117102" stop="117129"/>
              <exon start="117206" stop="117265"/>
              <exon start="117920" stop="118036"/>
              <exon start="118305" stop="118494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118320" stop="118544"/>
              <exon start="118628" stop="118693"/>
              <exon start="118814" stop="118903"/>
              <exon start="119810" stop="119899"/>
              <exon start="120171" stop="120260"/>
              <exon start="120532" stop="120600"/>
              <exon start="120680" stop="120760"/>
              <exon start="120869" stop="120901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118320" stop="118544"/>
              <exon start="118628" stop="118693"/>
              <exon start="118814" stop="118903"/>
              <exon start="119810" stop="119899"/>
              <exon start="120171" stop="120203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119834" stop="119899"/>
              <exon start="120171" stop="120260"/>
              <exon start="120532" stop="120600"/>
              <exon start="120680" stop="120760"/>
              <exon start="120869" stop="120976"/>
              <exon start="121066" stop="121169"/>
              <exon start="121306" stop="121419"/>
              <exon start="121511" stop="121516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119834" stop="119899"/>
              <exon start="120171" stop="120260"/>
              <exon start="120532" stop="120600"/>
              <exon start="120680" stop="120760"/>
              <exon start="120869" stop="120976"/>
              <exon start="121066" stop="121169"/>
              <exon start="121306" stop="121397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119834" stop="119899"/>
              <exon start="120171" stop="120260"/>
              <exon start="120532" stop="120600"/>
              <exon start="120680" stop="120760"/>
              <exon start="120869" stop="120976"/>
              <exon start="121066" stop="121169"/>
              <exon start="121306" stop="121370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121102" stop="121169"/>
              <exon start="121306" stop="121419"/>
              <exon start="121511" stop="122113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121322" stop="121419"/>
              <exon start="121511" stop="122125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121355" stop="121419"/>
              <exon start="121511" stop="122113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121356" stop="121419"/>
              <exon start="121511" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAACTATGCTGCTTTAAGTGCAGAA : GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG : GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG : GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG : GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG : CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG : ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG : TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG : ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG : GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG : GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG : TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG : GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA : GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</gDNA_template>
            <first_frame> F  E  L  C  C  F  K  C  R   : S  F  T  *  V  L  P  G  *  S  F  R  K  T  *  *  C  H  R  Q   : G  D  R  G  S  R  R  H  A  Y  C  R  S  G  D  I  V  F  I  P  F  D  I  F  S  S  C  P  P  *  S  P  *  L  C  R  S  D  S   : G  C  M  C  T  E  T  F  W  K  R  K  A  Q  R  Q  Q  S  N  K  T  D  S  G  P  T  K  C  S  S  G  E  V  *  G  Y  R  Y  C  A  K  A  V  K  L  S  S  S  Y  G  E  S  *  R  F  N  *  *  R  D  G  *  C  F  S  T  K  Y  F  E  K  *  D  L  H  F  N  C  *  K   : G  *  G  T  F  *  V  N  E  S  T  N  S  R  F  G  *  G  C  *  *  *   : A  *  *  R  *  F  P  G  R  A  E  F  C  C  A  A  Y  S  N  A  S  Q  *  *  S  *  R  D  A  E   : D  Y  L  C  C  E  E  A  H  F  D  R  R  A  K  E  T  S  F  Y  C  P  S  P  Y  F  Q  L  T  K   : V  C  *  A  T  T  *  S  *  *  K  C  S  *  G  R  V  I  C  Y  A  *  E  I  L  S  D  S  E  S   : D  Y  *  G  A  L  N  C  S  C  T  *  T  S  T  E  A  V  P  G  V  C  *   : G  C  Q  *  L  *  H  R  A  C  C  L  *  I  F  H  S  S  L  Y  T  I  *  R  R  N  F   : G  L  Q  S  T  G  D  C  N  T  L  D  N  R  N  S  S  E  N  A  H  L  W  C  *  E  Q  G  H  V  N  A  Q  G  Y  R   : V  L  C  K  A  L  E  E  T  *  S  M  *  S  C  V  C  L  F  A  S  F  L  G  *  R  S  G  Q  Y  Q  G  W  R  K  :  G  F  A  L  L  K  A  G  L  K  N  C  K  C  C  S  T  N  V  Q  C  N  P  R  Q  Q  W  I  C  L  A  L  Y  R  N  S  K  Q  :  V  S  V  F  L  *  E  G  G  L  T  N  *  C  C  L  R  P  E  P  D  *  A  N  H  N  *  N  A  K  *  K  Y  N  S  R  S  C  S  R  C  L  L  C  K  H  L  A  I  H  P  V  P  E  G  *  R  W  C  S  W  G  E  I  R  V  H  Q  L  I  I  K  *  H  F  S  K  E  L  R  S  W  C  H  R  S  S  T  F  F  L  Q  S  T  K  L  I  P  F  Q  L  A  L  E  K  N  A  F  D  N  G  L  A  E  A  A  E  K  M  H  I  Y  *  P  H  P  Y  A  V  I  S  *  *  R  L  L  L  L  *  Q  F  A  L  Q  L  *  L  P  S  A  C  H  C  Y  F  F  F  F  F  W  W  R  V  G  F  L  L  R  W  K  R  Q  G  V  E  K  *  F  I  N  L  *  F  R  N  V  I  M  T  S  T  R  I  I  C  P  S  V  L  Y  N  M  F  C  P  I  *  H </first_frame>
            <second_frame>  S  N  Y  A  A  L  S  A  E  :  V  L  P  E  F  F  Q  V  E  A  F  A  K  L  N  S  A  I  G  K  :  V  I  E  A  Q  E  D  M  P  I  A  G  V  V  T  L  Y  S  S  L  L  T  F  S  L  H  V  H  P  D  R  L  D  Y  V  D  Q  I  L  :  G  A  C  V  Q  K  L  S  G  K  G  K  L  K  D  N  K  A  T  K  Q  I  V  A  L  L  S  A  P  L  E  K  Y  K  D  I  D  T  A  L  K  L  S  N  Y  P  R  L  M  E  N  L  D  D  S  T  S  K  E  M  A  N  V  L  V  Q  N  I  L  K  N  K  T  C  I  S  T  A  E  K  :  V  E  A  L  F  E  L  M  K  A  L  I  R  D  L  D  E  G  V  D  D  E  :  L  D  E  D  D  F  Q  E  E  Q  N  S  V  A  Q  L  I  Q  M  L  H  N  D  D  P  E  E  M  L  K  :  I  I  C  A  V  K  K  H  I  L  T  G  G  P  K  R  L  P  F  T  V  P  P  L  I  F  N  S  L  K  :  F  V  R  R  L  H  S  H  D  E  N  V  P  E  E  E  S  S  A  M  P  K  K  F  F  Q  I  L  N  Q  :  I  I  E  A  L  S  I  V  P  V  P  E  L  A  L  K  L  Y  L  E  C  A  E  :  A  A  N  D  S  D  I  E  P  V  A  Y  E  F  F  T  Q  A  Y  I  L  Y  E  E  E  I  S  :  D  S  K  A  Q  V  T  A  I  H  L  I  I  G  T  L  Q  R  M  H  I  F  G  V  E  N  R  D  T  L  T  H  K  A  T  G  :  Y  S  A  K  L  L  K  K  P  D  Q  C  R  A  V  Y  A  C  S  H  L  F  W  V  D  D  Q  D  N  I  K  D  G  E  R :   V  L  L  C  L  K  R  A  L  R  I  A  N  A  A  Q  Q  M  S  N  A  T  R  G  S  S  G  S  V  L  L  F  I  E  I  L  N  K :   Y  L  Y  F  F  E  K  G  V  S  Q  I  N  V  A  S  V  Q  S  L  I  E  L  I  T  T  E  M  Q  S  E  N  T  T  A  D  P  A  A  D  A  F  F  A  S  T  L  R  Y  I  Q  F  Q  K  D  K  G  G  A  V  G  E  K  F  E  S  I  N  S  *  S  N  S  I  S  Q  R  N  Y  V  L  G  V  T  E  A  A  H  F  S  Y  K  V  Q  N  *  F  L  F  N  L  L  *  R  K  M  H  L  T  T  D  *  Q  K  Q  L  K  R  C  I  Y  T  D  H  T  P  T  Q  *  Y  P  N  K  D  C  Y  C  C  N  N  L  L  S  S  Y  D  F  R  V  P  A  T  V  T  F  F  F  F  F  G  G  E  *  V  F  F  *  G  G  R  D  K  E  W  R  S  S  S  L  I  C  S  S  E  M  *  L  *  R  V  L  E  *  F  V  P  Q  F  C  I  T  C  S  V  P  F  N   </second_frame>
            <third_frame>   R  T  M  L  L  *  V  Q  K :   F  Y  L  S  S  S  R  L  K  L  S  Q  N  L  I  V  P  *  A  R :   *  *  R  L  K  K  T  C  L  L  P  E  W  *  H  C  I  H  P  F  *  H  F  L  F  M  S  T  L  I  A  L  I  M  *  I  R  F  W :   V  H  V  Y  R  N  F  L  E  K  E  S  S  K  T  T  K  Q  Q  N  R  *  W  P  Y  *  V  L  L  W  R  S  I  R  I  *  I  L  R  *  S  C  Q  I  I  L  V  L  W  R  I  L  T  I  Q  L  V  K  R  W  L  M  F  *  Y  K  I  F  *  K  I  R  L  A  F  Q  L  L  K  R :   L  R  H  F  L  S  *  *  K  H  *  F  E  I  W  M  R  V  L  M  M  S :   L  M  K  M  I  S  R  K  S  R  I  L  L  R  S  L  F  K  C  F  T  M  M  I  L  K  R  C  *  R :   L  F  V  L  *  R  S  T  F  *  Q  E  G  Q  R  D  F  L  L  L  S  L  P  L  F  S  T  H  *  S :   L  L  G  D  Y  I  V  M  M  K  M  F  L  R  K  S  H  L  L  C  L  R  N  S  F  R  F  *  I  R :   L  L  R  R  S  Q  L  F  L  Y  L  N  *  H  *  S  C  T  W  S  V  L  R :   L  P  M  T  L  T  *  S  L  L  P  M  N  F  S  L  K  L  I  Y  Y  M  K  K  K  F  R :   T  P  K  H  R  *  L  Q  Y  T  *  *  *  E  L  F  R  E  C  T  S  L  V  L  R  T  G  T  R  *  R  T  R  L  Q  G :   T  L  Q  S  S  *  R  N  L  I  N  V  E  L  C  M  L  V  R  I  F  S  G  L  T  I  R  T  I  S  R  M  E  K   : G  F  C  F  A  *  S  G  P  *  E  L  Q  M  L  L  N  K  C  P  M  Q  P  E  A  A  V  D  L  S  C  S  L  *  K  F  *  T   : S  I  C  I  S  L  R  R  G  S  H  K  L  M  L  P  P  S  R  A  *  L  S  *  S  Q  L  K  C  K  V  K  I  Q  Q  Q  I  L  Q  Q  M  P  S  L  Q  A  P  C  D  T  S  S  S  R  R  I  K  V  V  Q  L  G  R  N  S  S  P  S  T  H  N  Q  I  A  F  L  K  G  I  T  F  L  V  S  Q  K  Q  H  I  F  L  T  K  Y  K  I  D  S  F  S  T  C  S  R  E  K  C  I  *  Q  R  T  S  R  S  S  *  K  D  A  Y  I  L  T  T  P  L  R  S  N  I  L  I  K  I  V  I  V  V  T  I  C  S  P  A  M  T  S  E  C  L  P  L  L  L  F  F  F  F  L  V  E  S  R  F  S  F  E  V  E  E  T  R  S  G  E  V  V  H  *  F  V  V  Q  K  C  D  Y  D  E  Y  *  N  N  L  S  L  S  F  V  *  H  V  L  S  H  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117103" stop="117129"/>
                    <exon start="117206" stop="117265"/>
                    <exon start="117920" stop="118036"/>
                    <exon start="118305" stop="118544"/>
                    <exon start="118628" stop="118693"/>
                    <exon start="118814" stop="118903"/>
                    <exon start="119810" stop="119899"/>
                    <exon start="120171" stop="120260"/>
                    <exon start="120532" stop="120600"/>
                    <exon start="120680" stop="120760"/>
                    <exon start="120869" stop="120976"/>
                    <exon start="121066" stop="121169"/>
                    <exon start="121306" stop="121419"/>
                    <exon start="121511" stop="121721"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNYAALSAEVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFSLHVHPDRLDYVDQILGACVQKLSGKGKLKDNKATKQIVALLSAPLEKYKDIDTALKLSNYPRLMENLDDSTSKEMANVLVQNILKNKTCISTAEKVEALFELMKALIRDLDEGVDDELDEDDFQEEQNSVAQLIQMLHNDDPEEMLKIICAVKKHILTGGPKRLPFTVPPLIFNSLKFVRRLHSHDENVPEEESSAMPKKFFQILNQIIEALSIVPVPELALKLYLECAEAANDSDIEPVAYEFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILNKYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAADAFFASTLRYIQFQKDKGGAVGEKFESINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="123551" PGL_stop="121279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123551" e_stop="123436"/>
            <exon e_start="123350" e_stop="123223"/>
            <exon e_start="123153" e_stop="123049"/>
            <exon e_start="122804" e_stop="122493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123551" e_stop="123436" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123350" e_stop="123223" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123153" e_stop="123049" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="122804" e_stop="122493" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123551" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123545" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123515" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATT</gDNA_template>
            <first_frame> Q  H  L  F  S  P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  </first_frame>
            <second_frame>  N  I  F  S  L  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I </second_frame>
            <third_frame>   T  S  F  L  S  F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123550" stop="123436"/>
                    <exon start="123350" stop="123223"/>
                    <exon start="123153" stop="123049"/>
                    <exon start="122804" stop="122661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFSLLLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123515" e_stop="123436"/>
            <exon e_start="123350" e_stop="123223"/>
            <exon e_start="123153" e_stop="123049"/>
            <exon e_start="122804" e_stop="122517"/>
            <exon e_start="122290" e_stop="122261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="123515" e_stop="123436" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123350" e_stop="123223" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123153" e_stop="123049" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122804" e_stop="122517" e_length="288"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="122516" i_stop="122291" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="122290" e_stop="122261" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123515" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123466" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122517"/>
              <exon start="122290" stop="122261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTT : ACGAAAATGTTCATATAGAAAAATATGTAA</gDNA_template>
            <first_frame> L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I   : Y  E  N  V  H  I  E  K  Y  V  </first_frame>
            <second_frame>  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  :  T  K  M  F  I  *  K  N  M  * </second_frame>
            <third_frame>   H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  L :   R  K  C  S  Y  R  K  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123514" stop="123436"/>
                    <exon start="123350" stop="123223"/>
                    <exon start="123153" stop="123049"/>
                    <exon start="122804" stop="122661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="123519" e_stop="123436"/>
            <exon e_start="123350" e_stop="123223"/>
            <exon e_start="123153" e_stop="123049"/>
            <exon e_start="122804" e_stop="122654"/>
            <exon e_start="121934" e_stop="121919"/>
            <exon e_start="121856" e_stop="121816"/>
            <exon e_start="121577" e_stop="121543"/>
            <exon e_start="121293" e_stop="121279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.038" e_score="0.750"/>
          <exon-intron don_prob="0.943" acc_prob="0.458" e_score="0.537"/>
          <exon-intron don_prob="0.531" acc_prob="0.138" e_score="0.486"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="123519" e_stop="123436" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123435" i_stop="123351" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="123350" e_stop="123223" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="123222" i_stop="123154" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123153" e_stop="123049" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123048" i_stop="122805" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="122804" e_stop="122654" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122653" i_stop="121935" i_length="719"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="121934" e_stop="121919" e_length="16"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.038">
            <gDNA_intron_boundary i_start="121918" i_stop="121857" i_length="62"/>
          </intron>
          <exon e_serial="6" e_score="0.537">
            <gDNA_exon_boundary e_start="121856" e_stop="121816" e_length="41"/>
          </exon>
          <intron i_serial="6" don_prob="0.943" acc_prob="0.458">
            <gDNA_intron_boundary i_start="121815" i_stop="121578" i_length="238"/>
          </intron>
          <exon e_serial="7" e_score="0.486">
            <gDNA_exon_boundary e_start="121577" e_stop="121543" e_length="35"/>
          </exon>
          <intron i_serial="7" don_prob="0.531" acc_prob="0.138">
            <gDNA_intron_boundary i_start="121542" i_stop="121294" i_length="249"/>
          </intron>
          <exon e_serial="8" e_score="0.733">
            <gDNA_exon_boundary e_start="121293" e_stop="121279" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123519" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122654"/>
              <exon start="121934" stop="121919"/>
              <exon start="121856" stop="121816"/>
              <exon start="121577" stop="121543"/>
              <exon start="121293" stop="121279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123515" stop="123436"/>
              <exon start="123350" stop="123223"/>
              <exon start="123153" stop="123049"/>
              <exon start="122804" stop="122713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAA : CAAATTGTTACAACAA : CTGCTTCTGCTAGTCCGTTGTCAAATGCATTTTTCTCTAGA : CTCAATCAGGCTCTGGACGGAGGCAACATTAATTT : GGGAAATAAGTAACA</gDNA_template>
            <first_frame> S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  :  Q  I  V  T  T   : T  A  S  A  S  P  L  S  N  A  F  F  S  R  :  L  N  Q  A  L  D  G  G  N  I  N  L :   G  N  K  *   </first_frame>
            <second_frame>  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N :   K  L  L  Q  Q  :  L  L  L  L  V  R  C  Q  M  H  F  S  L  D :   S  I  R  L  W  T  E  A  T  L  I   : W  E  I  S  N  </second_frame>
            <third_frame>   F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S   : T  N  C  Y  N  N :   C  F  C  *  S  V  V  K  C  I  F  L  *   : T  Q  S  G  S  G  R  R  Q  H  *  F  :  G  K  *  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123517" stop="123436"/>
                    <exon start="123350" stop="123223"/>
                    <exon start="123153" stop="123049"/>
                    <exon start="122804" stop="122661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="128638" PGL_stop="124794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128638" e_stop="128039"/>
            <exon e_start="127275" e_stop="127188"/>
            <exon e_start="127068" e_stop="126959"/>
            <exon e_start="126877" e_stop="126814"/>
            <exon e_start="126030" e_stop="125966"/>
            <exon e_start="125862" e_stop="125797"/>
            <exon e_start="125695" e_stop="125287"/>
            <exon e_start="124820" e_stop="124794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.985"/>
          <exon-intron don_prob="0.935" acc_prob="0.934" e_score="0.929"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128638" e_stop="128039" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127275" e_stop="127188" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127068" e_stop="126959" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126877" e_stop="126814" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="126030" e_stop="125966" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="125862" e_stop="125797" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.929">
            <gDNA_exon_boundary e_start="125695" e_stop="125287" e_length="409"/>
          </exon>
          <intron i_serial="7" don_prob="0.935" acc_prob="0.934">
            <gDNA_intron_boundary i_start="125286" i_stop="124821" i_length="466"/>
          </intron>
          <exon e_serial="8" e_score="0.556">
            <gDNA_exon_boundary e_start="124820" e_stop="124794" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128638" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="126006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128566" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128566" stop="128039"/>
              <exon start="127275" stop="127216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128562" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128561" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128561" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128559" stop="128057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128551" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128549" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="126003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128535" stop="128108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128512" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128512" stop="128039"/>
              <exon start="127275" stop="127216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128505" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="127030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127039" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127016" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125287"/>
              <exon start="124820" stop="124794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415530" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125670" stop="125295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG : GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG : GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG : TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG : ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG : GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG : AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCG : GGAATGTTGACTCTACAAACATGGCAA</gDNA_template>
            <first_frame> H  Y  F  P  A  K  T  K  G  Y  L  *  Y  *  L  R  M  E  K  N  T  E  M  N  T  H  L  F  S  S  F  L  S  L  P  Q  T  F  S  F  *  I  W  D  P  *  I  S  P  H  F  L  F  T  I  S  L  F  S  F  S  F  T  L  F  P  F  P  S  S  T  I  L  S  E  L  S  L  S  *  N  *  G  *  G  F  T  K  R  T  K  E  N  T  I  G  M  S  R  F  S  S  L  L  G  F  Q  A  I  L  K  K  R  H  *  K  E  L  E  R  L  K  E  T  E  T  R  S  S  K  I  P  H  L  I  S  F  F  L  F  K  F  F  L  G  S  G  L  L  K  K  I  *  K  E  E  G  Y  C  W  F  S  E  *  P  G  K  M  S  A  S  R  F  I  K  C  V  T  V  G  D  G  A  V  G  K  T  C  L  L  I  S  Y  T  S  N  T  F  P  T  :  D  Y  V  P  T  V  F  D  N  F  S  A  N  V  V  V  N  G  S  T  V  N  L  G  L  W  D  T  A   : G  Q  E  D  Y  N  R  L  R  P  L  S  Y  R  G  A  D  V  F  I  L  A  F  S  L  I  S  K  A  S  Y  E  N  V  A  K  K  :  W  I  P  E  L  K  H  Y  A  P  G  V  P  I  V  L  V  G  T  K  L   : D  L  R  D  D  K  Q  F  F  V  D  H  P  G  A  V  P  I  T  T  A  Q  :  G  E  E  L  R  K  T  I  G  A  P  A  Y  I  E  C  S  S  K  T  Q  Q  :  N  V  K  A  V  F  D  A  A  I  K  V  V  L  Q  P  P  K  Q  K  K  K  K  G  K  S  Q  K  A  C  S  I  L  *  S  T  V  G  P  M  L  L  L  V  T  L  L  L  V  T  S  L  S  Y  S  F  V  I  C  L  G  G  S  R  R  S  M  L  Y  V  S  F  K  I  T  S  D  L  L  N  C  Q  V  A  R  F  S  V  *  W  L  *  S  L  I  V  *  S  H  S  T  F  V  V  G  H  S  I  V  P  S  L  F  *  F  A  L  Y  V  F  *  *  P  D  D  P  V  R  K  K  K  K  G  N  F  P   : G  N  V  D  S  T  N  M  A  </first_frame>
            <second_frame>  I  I  S  R  L  K  Q  R  V  T  Y  N  T  D  S  E  W  K  K  I  Q  R  *  T  P  I  Y  F  H  P  F  S  L  Y  L  K  L  S  L  S  R  S  G  I  P  K  F  L  L  I  F  S  L  P  F  L  Y  S  H  F  H  S  P  Y  S  L  S  P  L  L  Q  F  S  L  N  F  P  F  R  R  I  R  V  R  V  S  P  R  E  P  K  K  T  P  L  A  C  L  D  F  L  L  C  W  V  F  K  P  F  *  R  N  D  I  E  R  N  W  R  G  *  K  K  R  K  Q  E  A  P  R  Y  H  I  *  S  L  F  F  F  L  N  F  F  W  D  Q  V  F  *  R  R  S  E  K  R  R  V  I  V  G  F  L  N  S  R  E  K  *  V  L  Q  G  L  S  N  V  L  P  S  A  M  V  P  L  E  R  R  V  S  *  F  L  T  P  A  I  P  S  P  R :   I  M  C  P  P  C  S  T  I  S  V  Q  M  W  S  S  M  G  A  L  S  T  *  G  C  G  I  L  L  :  D  R  R  I  T  I  G  *  D  L  *  V  T  V  E  L  M  F  S  F  W  H  S  L  S  L  V  K  P  A  M  K  T  L  P  R  S :   G  F  L  N  *  S  I  M  P  P  V  F  Q  *  C  L  L  E  Q  N  *  :  I  F  G  M  I  S  N  S  S  *  T  I  L  V  L  C  Q  L  P  L  L  R :   V  K  S  *  G  K  Q  L  V  H  L  L  T  L  N  V  V  Q  K  H  S  R :   T  *  K  Q  S  L  M  P  L  S  R  S  C  S  S  H  P  S  R  R  K  R  R  G  S  P  K  R  H  V  L  F  C  D  Q  Q  *  V  Q  C  Y  Y  W  S  H  F  S  L  *  P  L  S  R  I  P  L  S  F  V  S  E  E  V  G  G  P  C  C  M  S  H  L  K  L  L  V  I  S  *  I  V  R  W  L  G  F  L  C  N  G  C  D  L  *  L  F  S  H  T  A  P  L  S  *  A  T  L  L  C  P  L  C  S  D  L  L  Y  M  Y  F  N  D  L  M  I  Q  L  E  K  K  K  K  E  I  F  P  :  G  M  L  T  L  Q  T  W  Q </second_frame>
            <third_frame>   L  F  P  G  *  N  K  G  L  L  I  I  L  T  Q  N  G  K  K  Y  R  D  E  H  P  F  I  F  I  L  S  L  S  T  S  N  F  L  F  L  D  L  G  S  L  N  F  S  S  F  S  L  Y  H  F  S  I  L  I  F  I  H  L  I  P  F  P  L  F  Y  N  S  L  *  T  F  P  F  V  E  L  G  L  G  F  H  Q  E  N  Q  R  K  H  H  W  H  V  S  I  F  F  S  A  G  F  S  S  H  S  E  E  T  T  L  K  G  I  G  E  V  K  R  N  G  N  K  K  L  Q  D  T  T  F  N  L  F  F  S  F  *  I  F  S  G  I  R  S  S  K  E  D  L  K  R  G  G  L  L  L  V  F  *  I  A  G  K  N  E  C  F  K  V  Y  Q  M  C  Y  R  R  R  W  C  R  W  K  D  V  S  L  D  F  L  H  Q  Q  Y  L  P  H   : G  L  C  A  H  R  V  R  Q  F  Q  C  K  C  G  R  Q  W  E  H  C  Q  P  R  V  V  G  Y  C  W :   T  G  G  L  Q  *  V  K  T  S  E  L  P  W  S  *  C  F  H  F  G  I  L  S  H  *  *  S  Q  L  *  K  R  C  Q  E   : V  D  S  *  I  E  A  L  C  P  R  C  S  N  S  A  C  W  N  K  T  R :   S  S  G  *  *  A  I  L  R  R  P  S  W  C  C  A  N  Y  H  C  S   : G  *  R  A  E  E  N  N  W  C  T  C  L  H  *  M  *  F  K  N  T  A   : E  R  E  S  S  L  *  C  R  Y  Q  G  R  A  P  A  T  Q  A  E  E  K  E  G  E  V  P  K  G  M  F  Y  F  V  I  N  S  R  S  N  V  I  T  G  H  T  S  P  C  N  L  S  L  V  F  L  C  H  L  S  R  R  K  *  E  V  H  V  V  C  L  I  *  N  Y  *  *  S  L  E  L  S  G  G  S  V  F  C  V  M  A  V  I  S  N  C  L  V  T  Q  H  L  C  R  R  P  L  Y  C  A  L  S  V  L  I  C  F  I  C  I  L  M  T  *  *  S  S  *  K  K  K  K  R  K  F  S  R :   E  C  *  L  Y  K  H  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128146" stop="128039"/>
                    <exon start="127275" stop="127188"/>
                    <exon start="127068" stop="126959"/>
                    <exon start="126877" stop="126814"/>
                    <exon start="126030" stop="125966"/>
                    <exon start="125862" stop="125797"/>
                    <exon start="125695" stop="125594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKSQKACSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128568" stop="128308"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIYFHPFSLYLKLSLSRSGIPKFLLIFSLPFLYSHFHSPYSLSPLLQFSLNFPFRRIRVRVSPREPKKTPLACLDFLLCWVFKPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="128638" e_stop="128039"/>
            <exon e_start="127275" e_stop="127188"/>
            <exon e_start="127068" e_stop="126959"/>
            <exon e_start="126877" e_stop="126814"/>
            <exon e_start="126030" e_stop="125966"/>
            <exon e_start="125862" e_stop="125797"/>
            <exon e_start="125695" e_stop="125203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128638" e_stop="128039" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128038" i_stop="127276" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127275" e_stop="127188" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127187" i_stop="127069" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127068" e_stop="126959" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126958" i_stop="126878" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126877" e_stop="126814" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126813" i_stop="126031" i_length="783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126030" e_stop="125966" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="125965" i_stop="125863" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125862" e_stop="125797" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="125796" i_stop="125696" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="125695" e_stop="125203" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128638" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="126006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128566" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128566" stop="128039"/>
              <exon start="127275" stop="127216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128562" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128561" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128561" stop="128039"/>
              <exon start="127275" stop="127188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128559" stop="128057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128551" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128549" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="126003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128535" stop="128108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128512" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128512" stop="128039"/>
              <exon start="127275" stop="127216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128505" stop="128039"/>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="127030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127275" stop="127188"/>
              <exon start="127068" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127039" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126975" stop="126959"/>
              <exon start="126877" stop="126814"/>
              <exon start="126030" stop="125966"/>
              <exon start="125862" stop="125797"/>
              <exon start="125695" stop="125203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125670" stop="125295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG : GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG : GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG : TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG : ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG : GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG : AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAATATATTACTATTTTCTTTCAA</gDNA_template>
            <first_frame> H  Y  F  P  A  K  T  K  G  Y  L  *  Y  *  L  R  M  E  K  N  T  E  M  N  T  H  L  F  S  S  F  L  S  L  P  Q  T  F  S  F  *  I  W  D  P  *  I  S  P  H  F  L  F  T  I  S  L  F  S  F  S  F  T  L  F  P  F  P  S  S  T  I  L  S  E  L  S  L  S  *  N  *  G  *  G  F  T  K  R  T  K  E  N  T  I  G  M  S  R  F  S  S  L  L  G  F  Q  A  I  L  K  K  R  H  *  K  E  L  E  R  L  K  E  T  E  T  R  S  S  K  I  P  H  L  I  S  F  F  L  F  K  F  F  L  G  S  G  L  L  K  K  I  *  K  E  E  G  Y  C  W  F  S  E  *  P  G  K  M  S  A  S  R  F  I  K  C  V  T  V  G  D  G  A  V  G  K  T  C  L  L  I  S  Y  T  S  N  T  F  P  T  :  D  Y  V  P  T  V  F  D  N  F  S  A  N  V  V  V  N  G  S  T  V  N  L  G  L  W  D  T  A   : G  Q  E  D  Y  N  R  L  R  P  L  S  Y  R  G  A  D  V  F  I  L  A  F  S  L  I  S  K  A  S  Y  E  N  V  A  K  K  :  W  I  P  E  L  K  H  Y  A  P  G  V  P  I  V  L  V  G  T  K  L   : D  L  R  D  D  K  Q  F  F  V  D  H  P  G  A  V  P  I  T  T  A  Q  :  G  E  E  L  R  K  T  I  G  A  P  A  Y  I  E  C  S  S  K  T  Q  Q  :  N  V  K  A  V  F  D  A  A  I  K  V  V  L  Q  P  P  K  Q  K  K  K  K  G  K  S  Q  K  A  C  S  I  L  *  S  T  V  G  P  M  L  L  L  V  T  L  L  L  V  T  S  L  S  Y  S  F  V  I  C  L  G  G  S  R  R  S  M  L  Y  V  S  F  K  I  T  S  D  L  L  N  C  Q  V  A  R  F  S  V  *  W  L  *  S  L  I  V  *  S  H  S  T  F  V  V  G  H  S  I  V  P  S  L  F  *  F  A  L  Y  V  F  *  *  P  D  D  P  V  R  K  K  K  K  G  N  F  P  G  N  V  D  N  I  F  L  *  T  Y  *  T  F  L  F  R  Y  C  I  Q  I  Y  Y  Y  F  L  S  </first_frame>
            <second_frame>  I  I  S  R  L  K  Q  R  V  T  Y  N  T  D  S  E  W  K  K  I  Q  R  *  T  P  I  Y  F  H  P  F  S  L  Y  L  K  L  S  L  S  R  S  G  I  P  K  F  L  L  I  F  S  L  P  F  L  Y  S  H  F  H  S  P  Y  S  L  S  P  L  L  Q  F  S  L  N  F  P  F  R  R  I  R  V  R  V  S  P  R  E  P  K  K  T  P  L  A  C  L  D  F  L  L  C  W  V  F  K  P  F  *  R  N  D  I  E  R  N  W  R  G  *  K  K  R  K  Q  E  A  P  R  Y  H  I  *  S  L  F  F  F  L  N  F  F  W  D  Q  V  F  *  R  R  S  E  K  R  R  V  I  V  G  F  L  N  S  R  E  K  *  V  L  Q  G  L  S  N  V  L  P  S  A  M  V  P  L  E  R  R  V  S  *  F  L  T  P  A  I  P  S  P  R :   I  M  C  P  P  C  S  T  I  S  V  Q  M  W  S  S  M  G  A  L  S  T  *  G  C  G  I  L  L  :  D  R  R  I  T  I  G  *  D  L  *  V  T  V  E  L  M  F  S  F  W  H  S  L  S  L  V  K  P  A  M  K  T  L  P  R  S :   G  F  L  N  *  S  I  M  P  P  V  F  Q  *  C  L  L  E  Q  N  *  :  I  F  G  M  I  S  N  S  S  *  T  I  L  V  L  C  Q  L  P  L  L  R :   V  K  S  *  G  K  Q  L  V  H  L  L  T  L  N  V  V  Q  K  H  S  R :   T  *  K  Q  S  L  M  P  L  S  R  S  C  S  S  H  P  S  R  R  K  R  R  G  S  P  K  R  H  V  L  F  C  D  Q  Q  *  V  Q  C  Y  Y  W  S  H  F  S  L  *  P  L  S  R  I  P  L  S  F  V  S  E  E  V  G  G  P  C  C  M  S  H  L  K  L  L  V  I  S  *  I  V  R  W  L  G  F  L  C  N  G  C  D  L  *  L  F  S  H  T  A  P  L  S  *  A  T  L  L  C  P  L  C  S  D  L  L  Y  M  Y  F  N  D  L  M  I  Q  L  E  K  K  K  K  E  I  F  P  A  M  L  T  T  Y  F  S  E  H  I  K  R  F  F  L  D  I  A  F  K  Y  I  T  I  F  F  Q </second_frame>
            <third_frame>   L  F  P  G  *  N  K  G  L  L  I  I  L  T  Q  N  G  K  K  Y  R  D  E  H  P  F  I  F  I  L  S  L  S  T  S  N  F  L  F  L  D  L  G  S  L  N  F  S  S  F  S  L  Y  H  F  S  I  L  I  F  I  H  L  I  P  F  P  L  F  Y  N  S  L  *  T  F  P  F  V  E  L  G  L  G  F  H  Q  E  N  Q  R  K  H  H  W  H  V  S  I  F  F  S  A  G  F  S  S  H  S  E  E  T  T  L  K  G  I  G  E  V  K  R  N  G  N  K  K  L  Q  D  T  T  F  N  L  F  F  S  F  *  I  F  S  G  I  R  S  S  K  E  D  L  K  R  G  G  L  L  L  V  F  *  I  A  G  K  N  E  C  F  K  V  Y  Q  M  C  Y  R  R  R  W  C  R  W  K  D  V  S  L  D  F  L  H  Q  Q  Y  L  P  H   : G  L  C  A  H  R  V  R  Q  F  Q  C  K  C  G  R  Q  W  E  H  C  Q  P  R  V  V  G  Y  C  W :   T  G  G  L  Q  *  V  K  T  S  E  L  P  W  S  *  C  F  H  F  G  I  L  S  H  *  *  S  Q  L  *  K  R  C  Q  E   : V  D  S  *  I  E  A  L  C  P  R  C  S  N  S  A  C  W  N  K  T  R :   S  S  G  *  *  A  I  L  R  R  P  S  W  C  C  A  N  Y  H  C  S   : G  *  R  A  E  E  N  N  W  C  T  C  L  H  *  M  *  F  K  N  T  A   : E  R  E  S  S  L  *  C  R  Y  Q  G  R  A  P  A  T  Q  A  E  E  K  E  G  E  V  P  K  G  M  F  Y  F  V  I  N  S  R  S  N  V  I  T  G  H  T  S  P  C  N  L  S  L  V  F  L  C  H  L  S  R  R  K  *  E  V  H  V  V  C  L  I  *  N  Y  *  *  S  L  E  L  S  G  G  S  V  F  C  V  M  A  V  I  S  N  C  L  V  T  Q  H  L  C  R  R  P  L  Y  C  A  L  S  V  L  I  C  F  I  C  I  L  M  T  *  *  S  S  *  K  K  K  K  R  K  F  S  R  Q  C  *  Q  H  I  S  L  N  I  L  N  V  S  F  *  I  L  H  S  N  I  L  L  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128146" stop="128039"/>
                    <exon start="127275" stop="127188"/>
                    <exon start="127068" stop="126959"/>
                    <exon start="126877" stop="126814"/>
                    <exon start="126030" stop="125966"/>
                    <exon start="125862" stop="125797"/>
                    <exon start="125695" stop="125594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKSQKACSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128568" stop="128308"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIYFHPFSLYLKLSLSRSGIPKFLLIFSLPFLYSHFHSPYSLSPLLQFSLNFPFRRIRVRVSPREPKKTPLACLDFLLCWVFKPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="135276" PGL_stop="129681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135276" e_stop="134901"/>
            <exon e_start="132909" e_stop="132759"/>
            <exon e_start="132669" e_stop="132502"/>
            <exon e_start="132362" e_stop="132136"/>
            <exon e_start="131681" e_stop="131558"/>
            <exon e_start="131144" e_stop="131082"/>
            <exon e_start="130921" e_stop="130778"/>
            <exon e_start="130695" e_stop="130227"/>
            <exon e_start="129704" e_stop="129681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135276" e_stop="134901" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132909" e_stop="132759" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.987">
            <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132669" e_stop="132502" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132362" e_stop="132136" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131681" e_stop="131558" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131144" e_stop="131082" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="130921" e_stop="130778" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="130695" e_stop="130227" e_length="469"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130226" i_stop="129705" i_length="522"/>
          </intron>
          <exon e_serial="9" e_score="0.708">
            <gDNA_exon_boundary e_start="129704" e_stop="129681" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135276" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135272" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135269" stop="135039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135268" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135254" stop="134901"/>
              <exon start="132909" stop="132827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135005" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132820" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132786" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132597" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132597" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132594" stop="132502"/>
              <exon start="132362" stop="132234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132542" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132337" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132337" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132304" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130227"/>
              <exon start="129704" stop="129681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592147" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131676" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131649" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131625" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574760" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131109" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131104" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130527" stop="130227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG : ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG : GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG : GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG : GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT : GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA : CTAACAAAAAACGATAAAACTTGT</gDNA_template>
            <first_frame> I  H  K  S  S  T  P  Q  F  F  S  F  P  P  P  H  Q  L  S  W  R  R  L  S  A  Q  N  R  L  Y  L  S  P  I  R  P  T  N  S  T  N  P  E  Q  F  H  V  T  Y  T  F  V  S  L  L  P  S  L  H  L  L  P  G  V  G  *  S  R  K  P  P  H  D  *  R  C  W  Q  L  L  P  R  R  *  W  I  T  R  P  V  K  R  V  H  R  L  L  Q  L  L  K  W  I  W  V  L  G  A  T  R  F  I  L  G  L  D  F  L  I  N  L  T  S  Y  K   : D  I  F  M  G  R  E  S  L  S  L  L  T  L  Q  L  P  L  Y  I  L  I  K  L  *  A  L  *  Q  M  E  T  L  M  L  P  *  K  V  S  F  C  Q  M  V  S  N  L  K  T  W :   K  L  L  *  K  S  L  I  K  P  S  N  Q  G  W  I  V  V  V  H  L  S  L  S  V  V  E  L  *  V  T  C  V  V  M  P  P  L  P  T  F  V  E  L  I  L  F  R  S  P  P  L  L  W  H  R :   *  I  L  L  L  E  A  K  L  E  *  T  I  H  L  V  K  I  *  L  E  H  S  T  S  H  N  V  C  L  *  T  R  I  P  *  I  L  Y  Q  I  E  N  *  H  L  A  S  Q  K  *  *  N  M  D  S  L  E  M  L  S  F  S  S  G  K  N  R  I  C  H  Y  Y  *  Q   : G  T  P  L  H  L  P  M  L  S  S  V  P  V  K  T  K  Q  M  L  F  L  K  M  R  R  K  A  E  *  G  Q  L  *  T  W  V  I  P  L  V  M :   Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  :  L  T  K  N  D  K  T  C </first_frame>
            <second_frame>  S  T  N  R  R  R  H  N  F  S  P  S  L  R  H  T  N  F  H  G  V  V  F  L  P  K  T  G  F  I  F  H  Q  F  D  P  P  T  P  P  I  Q  S  N  S  T  *  H  T  R  S  F  P  C  S  R  L  F  T  F  F  Q  V  W  A  E  V  E  S  H  H  T  I  E  G  V  G  N  F  C  H  E  G  D  G  S  L  V  Q  *  S  E  F  T  G  S  Y  S  C  *  S  G  S  G  Y  S  E  L  P  D  L  Y  W  G  W  T  S  *  S  T  *  P  P  T  K  :  T  Y  S  W  E  E  S  P  C  R  Y  *  H  Y  S  C  P  S  I  S  *  *  N  Y  K  R  F  D  R  W  K  P  *  C  Y  R  R  K  C  H  F  A  R  W  *  A  I  *  K  H   : G  N  S  Y  E  S  L  *  *  S  H  R  I  K  A  G  S  S  L  Y  I  C  R  S  R  W  W  S  Y  R  *  H  V  W  L  C  R  R  F  L  P  S  W  S  *  F  Y  S  D  P  H  H  C  Y  G  T   : G  R  F  F  C  W  R  Q  N  W  N  K  P  S  T  W  *  K  Y  D  W  S  I  L  P  A  T  M  C  A  Y  R  H  G  Y  P  E  Y  F  T  R  *  R  I  S  I  W  P  R  R  S  N  K  I  W  T  H  *  R  C  *  V  F  R  V  A  R  T  E  Y  A  I  I  I  S  K  :  G  P  H  C  I  Y  L  C  Y  Q  A  F  L  *  K  Q  S  R  C  C  F  S  R  *  E  G  K  R  S  E  G  N  F  E  L  G  S  Y  L  W  S   : C  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  Y :   *  Q  K  T  I  K  L   </second_frame>
            <third_frame>   P  Q  I  V  D  A  T  I  F  L  L  P  S  A  T  P  T  F  M  A  S  S  F  C  P  K  Q  A  L  S  F  T  N  S  T  H  Q  L  H  Q  S  R  A  I  P  R  D  I  H  V  R  F  P  A  P  V  S  S  P  S  S  R  C  G  L  K  S  K  A  T  T  R  L  K  V  L  A  T  S  A  T  K  V  M  D  H  S  S  S  K  A  S  S  Q  A  P  T  V  V  E  V  D  L  G  T  R  S  Y  P  I  Y  I  G  A  G  L  L  D  Q  P  D  L  L  Q  R :   H  I  H  G  K  R  V  L  V  V  T  N  T  T  V  A  P  L  Y  L  D  K  T  I  S  A  L  T  D  G  N  P  N  V  T  V  E  S  V  I  L  P  D  G  E  Q  F  K  N  M  :  E  T  L  M  K  V  F  D  K  A  I  E  S  R  L  D  R  R  C  T  F  V  A  L  G  G  G  V  I  G  D  M  C  G  Y  A  A  A  S  Y  L  R  G  V  N  F  I  Q  I  P  T  T  V  M  A  Q  :  V  D  S  S  V  G  G  K  T  G  I  N  H  P  L  G  K  N  M  I  G  A  F  Y  Q  P  Q  C  V  L  I  D  T  D  T  L  N  T  L  P  D  R  E  L  A  S  G  L  A  E  V  I  K  Y  G  L  I  R  D  A  E  F  F  E  W  Q  E  Q  N  M  P  L  L  L  A  R :   D  P  T  A  F  T  Y  A  I  K  R  S  C  E  N  K  A  D  V  V  S  Q  D  E  K  E  S  G  V  R  A  T  L  N  L  G  H  T  F  G  H  :  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T   : T  N  K  K  R  *  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135274" stop="134901"/>
                    <exon start="132909" stop="132759"/>
                    <exon start="132669" stop="132502"/>
                    <exon start="132362" stop="132136"/>
                    <exon start="131681" stop="131558"/>
                    <exon start="131144" stop="131082"/>
                    <exon start="130921" stop="130778"/>
                    <exon start="130695" stop="130564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQIVDATIFLLPSATPTFMASSFCPKQALSFTNSTHQLHQSRAIPRDIHVRFPAPVSSPSSRCGLKSKATTRLKVLATSATKVMDHSSSKASSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="135276" e_stop="134901"/>
            <exon e_start="132909" e_stop="132759"/>
            <exon e_start="132669" e_stop="132502"/>
            <exon e_start="132362" e_stop="132136"/>
            <exon e_start="131681" e_stop="131558"/>
            <exon e_start="131144" e_stop="131082"/>
            <exon e_start="130921" e_stop="130778"/>
            <exon e_start="130695" e_stop="130222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135276" e_stop="134901" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134900" i_stop="132910" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132909" e_stop="132759" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.987">
            <gDNA_intron_boundary i_start="132758" i_stop="132670" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132669" e_stop="132502" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132501" i_stop="132363" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132362" e_stop="132136" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132135" i_stop="131682" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131681" e_stop="131558" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="131557" i_stop="131145" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131144" e_stop="131082" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="130921" e_stop="130778" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="130695" e_stop="130222" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135276" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135272" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135269" stop="135039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135268" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135254" stop="134901"/>
              <exon start="132909" stop="132827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135005" stop="134901"/>
              <exon start="132909" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132820" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132786" stop="132759"/>
              <exon start="132669" stop="132502"/>
              <exon start="132362" stop="132180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132597" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132597" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132594" stop="132502"/>
              <exon start="132362" stop="132234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132542" stop="132502"/>
              <exon start="132362" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132337" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132337" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132304" stop="132136"/>
              <exon start="131681" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131676" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131649" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131625" stop="131558"/>
              <exon start="131144" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574760" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131109" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131104" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130527" stop="130227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130440" stop="130222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG : ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG : GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG : GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG : GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT : GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATA</gDNA_template>
            <first_frame> I  H  K  S  S  T  P  Q  F  F  S  F  P  P  P  H  Q  L  S  W  R  R  L  S  A  Q  N  R  L  Y  L  S  P  I  R  P  T  N  S  T  N  P  E  Q  F  H  V  T  Y  T  F  V  S  L  L  P  S  L  H  L  L  P  G  V  G  *  S  R  K  P  P  H  D  *  R  C  W  Q  L  L  P  R  R  *  W  I  T  R  P  V  K  R  V  H  R  L  L  Q  L  L  K  W  I  W  V  L  G  A  T  R  F  I  L  G  L  D  F  L  I  N  L  T  S  Y  K   : D  I  F  M  G  R  E  S  L  S  L  L  T  L  Q  L  P  L  Y  I  L  I  K  L  *  A  L  *  Q  M  E  T  L  M  L  P  *  K  V  S  F  C  Q  M  V  S  N  L  K  T  W :   K  L  L  *  K  S  L  I  K  P  S  N  Q  G  W  I  V  V  V  H  L  S  L  S  V  V  E  L  *  V  T  C  V  V  M  P  P  L  P  T  F  V  E  L  I  L  F  R  S  P  P  L  L  W  H  R :   *  I  L  L  L  E  A  K  L  E  *  T  I  H  L  V  K  I  *  L  E  H  S  T  S  H  N  V  C  L  *  T  R  I  P  *  I  L  Y  Q  I  E  N  *  H  L  A  S  Q  K  *  *  N  M  D  S  L  E  M  L  S  F  S  S  G  K  N  R  I  C  H  Y  Y  *  Q   : G  T  P  L  H  L  P  M  L  S  S  V  P  V  K  T  K  Q  M  L  F  L  K  M  R  R  K  A  E  *  G  Q  L  *  T  W  V  I  P  L  V  M :   Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  I   </first_frame>
            <second_frame>  S  T  N  R  R  R  H  N  F  S  P  S  L  R  H  T  N  F  H  G  V  V  F  L  P  K  T  G  F  I  F  H  Q  F  D  P  P  T  P  P  I  Q  S  N  S  T  *  H  T  R  S  F  P  C  S  R  L  F  T  F  F  Q  V  W  A  E  V  E  S  H  H  T  I  E  G  V  G  N  F  C  H  E  G  D  G  S  L  V  Q  *  S  E  F  T  G  S  Y  S  C  *  S  G  S  G  Y  S  E  L  P  D  L  Y  W  G  W  T  S  *  S  T  *  P  P  T  K  :  T  Y  S  W  E  E  S  P  C  R  Y  *  H  Y  S  C  P  S  I  S  *  *  N  Y  K  R  F  D  R  W  K  P  *  C  Y  R  R  K  C  H  F  A  R  W  *  A  I  *  K  H   : G  N  S  Y  E  S  L  *  *  S  H  R  I  K  A  G  S  S  L  Y  I  C  R  S  R  W  W  S  Y  R  *  H  V  W  L  C  R  R  F  L  P  S  W  S  *  F  Y  S  D  P  H  H  C  Y  G  T   : G  R  F  F  C  W  R  Q  N  W  N  K  P  S  T  W  *  K  Y  D  W  S  I  L  P  A  T  M  C  A  Y  R  H  G  Y  P  E  Y  F  T  R  *  R  I  S  I  W  P  R  R  S  N  K  I  W  T  H  *  R  C  *  V  F  R  V  A  R  T  E  Y  A  I  I  I  S  K  :  G  P  H  C  I  Y  L  C  Y  Q  A  F  L  *  K  Q  S  R  C  C  F  S  R  *  E  G  K  R  S  E  G  N  F  E  L  G  S  Y  L  W  S   : C  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  *  Y  </second_frame>
            <third_frame>   P  Q  I  V  D  A  T  I  F  L  L  P  S  A  T  P  T  F  M  A  S  S  F  C  P  K  Q  A  L  S  F  T  N  S  T  H  Q  L  H  Q  S  R  A  I  P  R  D  I  H  V  R  F  P  A  P  V  S  S  P  S  S  R  C  G  L  K  S  K  A  T  T  R  L  K  V  L  A  T  S  A  T  K  V  M  D  H  S  S  S  K  A  S  S  Q  A  P  T  V  V  E  V  D  L  G  T  R  S  Y  P  I  Y  I  G  A  G  L  L  D  Q  P  D  L  L  Q  R :   H  I  H  G  K  R  V  L  V  V  T  N  T  T  V  A  P  L  Y  L  D  K  T  I  S  A  L  T  D  G  N  P  N  V  T  V  E  S  V  I  L  P  D  G  E  Q  F  K  N  M  :  E  T  L  M  K  V  F  D  K  A  I  E  S  R  L  D  R  R  C  T  F  V  A  L  G  G  G  V  I  G  D  M  C  G  Y  A  A  A  S  Y  L  R  G  V  N  F  I  Q  I  P  T  T  V  M  A  Q  :  V  D  S  S  V  G  G  K  T  G  I  N  H  P  L  G  K  N  M  I  G  A  F  Y  Q  P  Q  C  V  L  I  D  T  D  T  L  N  T  L  P  D  R  E  L  A  S  G  L  A  E  V  I  K  Y  G  L  I  R  D  A  E  F  F  E  W  Q  E  Q  N  M  P  L  L  L  A  R :   D  P  T  A  F  T  Y  A  I  K  R  S  C  E  N  K  A  D  V  V  S  Q  D  E  K  E  S  G  V  R  A  T  L  N  L  G  H  T  F  G  H  :  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135274" stop="134901"/>
                    <exon start="132909" stop="132759"/>
                    <exon start="132669" stop="132502"/>
                    <exon start="132362" stop="132136"/>
                    <exon start="131681" stop="131558"/>
                    <exon start="131144" stop="131082"/>
                    <exon start="130921" stop="130778"/>
                    <exon start="130695" stop="130564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQIVDATIFLLPSATPTFMASSFCPKQALSFTNSTHQLHQSRAIPRDIHVRFPAPVSSPSSRCGLKSKATTRLKVLATSATKVMDHSSSKASSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="131147" e_stop="131082"/>
            <exon e_start="130921" e_stop="130778"/>
            <exon e_start="130695" e_stop="130193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="131147" e_stop="131082" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131081" i_stop="130922" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130921" e_stop="130778" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130777" i_stop="130696" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="130695" e_stop="130193" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131147" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131109" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131104" stop="131082"/>
              <exon start="130921" stop="130778"/>
              <exon start="130695" stop="130427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130527" stop="130227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130440" stop="130222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTATAACTGTTTA</gDNA_template>
            <first_frame> Q  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  N  I  L  A  D  A  S  S  I  T  V   </first_frame>
            <second_frame>  R  Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  I  Y  L  L  M  H  L  L  *  L  F  </second_frame>
            <third_frame>   G  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  *  Y  T  C  *  C  I  F  Y  N  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131147" stop="131082"/>
                    <exon start="130921" stop="130778"/>
                    <exon start="130695" stop="130564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="130257" PGL_stop="130577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130257" e_stop="130577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="130257" e_stop="130577" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130257" stop="130577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130257" stop="130503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATTAGCAGATGATGGGGCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</gDNA_template>
            <first_frame> Y  Y  *  Q  M  M  G  L  H  C  *  A  T  S  I  K  K  I  *  Q  R  K  N  T  H  R  N  A  V  Y  K  Y  L  K  A  Q  E  I  L  H  *  P  K  G  K  N  *  Q  K  G  I  L  Y  F  T  E  G  I  S  I  P  P  S  A  N  R  A  A  Y  N  L  D  Q  P  F  Q  N  W  T  N  G  F  S  R  S  *  N  L  Y  F  C  R  T  I  A  S  M  *  Q  L  Q  L  L  K  I  W  K </first_frame>
            <second_frame>  I  I  S  R  *  W  G  S  T  V  R  L  Q  V  *  R  R  F  D  S  G  K  I  H  T  E  M  L  Y  T  N  I  *  K  L  K  K  Y  Y  T  N  Q  R  V  R  T  S  K  K  A  S  C  I  S  Q  R  A  *  A  Y  L  Q  A  L  T  E  L  P  T  T  L  T  N  L  F  R  I  G  L  M  V  L  A  D  H  K  T  C  I  F  V  E  Q  L  L  L  C  N  N  S  N  C  L  R  F  G   </second_frame>
            <third_frame>   L  L  A  D  D  G  A  P  L  L  G  Y  K  Y  K  E  D  L  T  A  E  K  Y  T  Q  K  C  C  I  Q  I  F  E  S  S  R  N  I  T  L  T  K  G  *  E  L  A  K  R  H  L  V  F  H  R  G  H  K  H  T  S  K  R  *  Q  S  C  L  Q  P  *  P  T  F  S  E  L  D  *  W  F  *  Q  I  I  K  L  V  F  L  S  N  N  C  F  Y  V  T  T  P  I  A  *  D  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030D08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="140181" PGL_stop="143028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140181" e_stop="140594"/>
            <exon e_start="141455" e_stop="141502"/>
            <exon e_start="141865" e_stop="141944"/>
            <exon e_start="142025" e_stop="142072"/>
            <exon e_start="142810" e_stop="142863"/>
            <exon e_start="142980" e_stop="143028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="0.930"/>
          <exon-intron don_prob="0.980" acc_prob="0.966" e_score="0.938"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.955" acc_prob="0.998" e_score="0.896"/>
          <exon-intron don_prob="0.993" acc_prob="0.917" e_score="0.963"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="140181" e_stop="140594" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="140595" i_stop="141454" i_length="860"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="141455" e_stop="141502" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.966">
            <gDNA_intron_boundary i_start="141503" i_stop="141864" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="141865" e_stop="141944" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="141945" i_stop="142024" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.896">
            <gDNA_exon_boundary e_start="142025" e_stop="142072" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.998">
            <gDNA_intron_boundary i_start="142073" i_stop="142809" i_length="737"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="142810" e_stop="142863" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.917">
            <gDNA_intron_boundary i_start="142864" i_stop="142979" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="142980" e_stop="143028" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140181" stop="140594"/>
              <exon start="141455" stop="141502"/>
              <exon start="141865" stop="141944"/>
              <exon start="142025" stop="142072"/>
              <exon start="142810" stop="142863"/>
              <exon start="142980" stop="143028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140181" stop="140594"/>
              <exon start="141455" stop="141502"/>
              <exon start="141865" stop="141944"/>
              <exon start="142025" stop="142072"/>
              <exon start="142810" stop="142863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTTCGAAAACAAGTATTTCTACTGGAGAAGTTGCCCATTTGCTGTCTGAAGTTATGTATTTGGCTTAGTTTTTTCTAGGGTTCAATAATCTCAGTCTCGTATCATCTCACCTTAATCGTGCAAATTCTCTGATTTTGAAACTCTTCAAAGTTCTTGGTATTTTGAAAAACAACATTGATAATCGTTCCCGTGGTAATGAAGAAAGTCAAGAGGAATGTGGCCATTGTAATTTCGTCGTCTGATGACGATGAAGACTTCTCAGTCAAGTCGAATTTCACCCACACGAAATCGAAATCGAATTCGAAATCGGTATCGGCGTCAGTTCCGAGGAGGTACCCTAAAAGGGCTAAAACGGCGAAACTTTCGTTATCATGTCCACGCCCATCTAAAGAGGGTAGTGTTTTCGATGAG : ATGAAACGGTTTTGTGAGGAGTTTGATGACGATTTCATGGGTATCAAG : GTCGTCGAAGCAACAATGACATGTGGATCGACAAACATAAGCCTCATTTCCTGGAAGAGCTTGCAGTTCAAAAGAAGAAG : GTCGAAGAAGTAAAAACATGGTTTGAAGAAAGGCTAAAAGCTGCAGTG : GATGGTCATAGTAATGTTCTTCTCGTTGCTGGACCTTCTGGTGTTGGAAAAACT : GCAACTATCCATGCTATTGCTTCGAATCTTGGTGTCACAATATGGGAGT</gDNA_template>
            <first_frame> G  F  R  K  Q  V  F  L  L  E  K  L  P  I  C  C  L  K  L  C  I  W  L  S  F  F  *  G  S  I  I  S  V  S  Y  H  L  T  L  I  V  Q  I  L  *  F  *  N  S  S  K  F  L  V  F  *  K  T  T  L  I  I  V  P  V  V  M  K  K  V  K  R  N  V  A  I  V  I  S  S  S  D  D  D  E  D  F  S  V  K  S  N  F  T  H  T  K  S  K  S  N  S  K  S  V  S  A  S  V  P  R  R  Y  P  K  R  A  K  T  A  K  L  S  L  S  C  P  R  P  S  K  E  G  S  V  F  D  E  :  M  K  R  F  C  E  E  F  D  D  D  F  M  G  I  K  :  V  V  E  A  T  M  T  C  G  S  T  N  I  S  L  I  S  W  K  S  L  Q  F  K  R  R  R :   S  K  K  *  K  H  G  L  K  K  G  *  K  L  Q  W :   M  V  I  V  M  F  F  S  L  L  D  L  L  V  L  E  K  L :   Q  L  S  M  L  L  L  R  I  L  V  S  Q  Y  G  S </first_frame>
            <second_frame>  A  F  E  N  K  Y  F  Y  W  R  S  C  P  F  A  V  *  S  Y  V  F  G  L  V  F  S  R  V  Q  *  S  Q  S  R  I  I  S  P  *  S  C  K  F  S  D  F  E  T  L  Q  S  S  W  Y  F  E  K  Q  H  *  *  S  F  P  W  *  *  R  K  S  R  G  M  W  P  L  *  F  R  R  L  M  T  M  K  T  S  Q  S  S  R  I  S  P  T  R  N  R  N  R  I  R  N  R  Y  R  R  Q  F  R  G  G  T  L  K  G  L  K  R  R  N  F  R  Y  H  V  H  A  H  L  K  R  V  V  F  S  M  R :   *  N  G  F  V  R  S  L  M  T  I  S  W  V  S  R :   S  S  K  Q  Q  *  H  V  D  R  Q  T  *  A  S  F  P  G  R  A  C  S  S  K  E  E   : G  R  R  S  K  N  M  V  *  R  K  A  K  S  C  S   : G  W  S  *  *  C  S  S  R  C  W  T  F  W  C  W  K  N   : C  N  Y  P  C  Y  C  F  E  S  W  C  H  N  M  G   </second_frame>
            <third_frame>   L  S  K  T  S  I  S  T  G  E  V  A  H  L  L  S  E  V  M  Y  L  A  *  F  F  L  G  F  N  N  L  S  L  V  S  S  H  L  N  R  A  N  S  L  I  L  K  L  F  K  V  L  G  I  L  K  N  N  I  D  N  R  S  R  G  N  E  E  S  Q  E  E  C  G  H  C  N  F  V  V  *  *  R  *  R  L  L  S  Q  V  E  F  H  P  H  E  I  E  I  E  F  E  I  G  I  G  V  S  S  E  E  V  P  *  K  G  *  N  G  E  T  F  V  I  M  S  T  P  I  *  R  G  *  C  F  R  *   : D  E  T  V  L  *  G  V  *  *  R  F  H  G  Y  Q   : G  R  R  S  N  N  D  M  W  I  D  K  H  K  P  H  F  L  E  E  L  A  V  Q  K  K  K  :  V  E  E  V  K  T  W  F  E  E  R  L  K  A  A  V  :  D  G  H  S  N  V  L  L  V  A  G  P  S  G  V  G  K  T  :  A  T  I  H  A  I  A  S  N  L  G  V  T  I  W  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140349" stop="140594"/>
                    <exon start="141455" stop="141502"/>
                    <exon start="141865" stop="141944"/>
                    <exon start="142025" stop="142037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTTLIIVPVVMKKVKRNVAIVISSSDDDEDFSVKSNFTHTKSKSNSKSVSASVPRRYPKRAKTAKLSLSCPRPSKEGSVFDEMKRFCEEFDDDFMGIKVVEATMTCGSTNISLISWKSLQFKRRRSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="143048" PGL_stop="147063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143048" e_stop="143082"/>
            <exon e_start="143190" e_stop="143497"/>
            <exon e_start="143856" e_stop="143963"/>
            <exon e_start="146095" e_stop="146130"/>
            <exon e_start="146714" e_stop="147063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.990" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.834" e_score="0.944"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="143048" e_stop="143082" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.965">
            <gDNA_intron_boundary i_start="143083" i_stop="143189" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="143190" e_stop="143497" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.990">
            <gDNA_intron_boundary i_start="143498" i_stop="143855" i_length="358"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="143856" e_stop="143963" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="143964" i_stop="146094" i_length="2131"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="146095" e_stop="146130" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.834">
            <gDNA_intron_boundary i_start="146131" i_stop="146713" i_length="583"/>
          </intron>
          <exon e_serial="5" e_score="0.903">
            <gDNA_exon_boundary e_start="146714" e_stop="147063" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143048" stop="143082"/>
              <exon start="143190" stop="143497"/>
              <exon start="143856" stop="143963"/>
              <exon start="146095" stop="146130"/>
              <exon start="146714" stop="147063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422979" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTGGCCAGAGCATTTGCATAATTCTAATTCAG : GGTTAAAATACATGTCAAAGCTAGATGAGTTTGAAGGTTTTGTTGAGAGGGTGAGAAAGTATGGATTGACTTCTCCAACGTTGAAGGGATCACAGGCTTCAGTCATACTCTTAGTTGATGATCTTCCTGTGGTAAATGTAAGAGCTGCGTATGGAAGGCTTCAAAGGTGTTTGACCCTTCTTGTGCAATTTGTCCGCATTCCAACAGCTATAGTGATCACAAACTATGACAAGGATGTCTCTGCAGACTTTAGCACACGCTGCTGGGAAGAACTCCTTCTATCTCTTCATAGTGCTGGGGCTTGTAAG : GTCAACTTCAACCCTGTCACTGTCAATTCAATCAAGAAAACACTTACAGCTATATGCAGAAAGGAGCAGCTTGAAGTTGGCGCTGATTCGATTGATCTAATAGCCAAA : CTATGGGAGGTTGAACAATCATCACGCCGCAATAAG : CGTCAAATGTTTACTCATTGGGGTGACTTGTATAATAGCCTAACCACATCAAATCAGATAGTTATGGCAACCGAGATTAGGCCTTCCCTTAAATGGCTTGGATGCAGAGCATCTGAAAGTTTCCAAGCAGACGACATGGTTGAAGATGACTCGGATAGCACCTATTTGCACGAGAATAAGCTGGATTTGTCCGACGATGAGATAGAAGATTGGTAGTTTGAAGCAGTGTTTGAGCTTGTATCAACATATAGTCCATGTGGGCTCTTTTTCACTTGTAAATTATGTATATTGCTGAAATTCTGTAAATTTTTTAGGGGAAACAATACAACTAGTTTATACTCATTGAAGTA</gDNA_template>
            <first_frame> S  L  A  R  A  F  A  *  F  *  F  R :   V  K  I  H  V  K  A  R  *  V  *  R  F  C  *  E  G  E  K  V  W  I  D  F  S  N  V  E  G  I  T  G  F  S  H  T  L  S  *  *  S  S  C  G  K  C  K  S  C  V  W  K  A  S  K  V  F  D  P  S  C  A  I  C  P  H  S  N  S  Y  S  D  H  K  L  *  Q  G  C  L  C  R  L  *  H  T  L  L  G  R  T  P  S  I  S  S  *  C  W  G  L  *   : G  Q  L  Q  P  C  H  C  Q  F  N  Q  E  N  T  Y  S  Y  M  Q  K  G  A  A  *  S  W  R  *  F  D  *  S  N  S  Q   : T  M  G  G  *  T  I  I  T  P  Q  *   : A  S  N  V  Y  S  L  G  *  L  V  *  *  P  N  H  I  K  S  D  S  Y  G  N  R  D  *  A  F  P  *  M  A  W  M  Q  S  I  *  K  F  P  S  R  R  H  G  *  R  *  L  G  *  H  L  F  A  R  E  *  A  G  F  V  R  R  *  D  R  R  L  V  V  *  S  S  V  *  A  C  I  N  I  *  S  M  W  A  L  F  H  L  *  I  M  Y  I  A  E  I  L  *  I  F  *  G  K  Q  Y  N  *  F  I  L  I  E  V </first_frame>
            <second_frame>  V  W  P  E  H  L  H  N  S  N  S   : G  L  K  Y  M  S  K  L  D  E  F  E  G  F  V  E  R  V  R  K  Y  G  L  T  S  P  T  L  K  G  S  Q  A  S  V  I  L  L  V  D  D  L  P  V  V  N  V  R  A  A  Y  G  R  L  Q  R  C  L  T  L  L  V  Q  F  V  R  I  P  T  A  I  V  I  T  N  Y  D  K  D  V  S  A  D  F  S  T  R  C  W  E  E  L  L  L  S  L  H  S  A  G  A  C  K  :  V  N  F  N  P  V  T  V  N  S  I  K  K  T  L  T  A  I  C  R  K  E  Q  L  E  V  G  A  D  S  I  D  L  I  A  K  :  L  W  E  V  E  Q  S  S  R  R  N  K  :  R  Q  M  F  T  H  W  G  D  L  Y  N  S  L  T  T  S  N  Q  I  V  M  A  T  E  I  R  P  S  L  K  W  L  G  C  R  A  S  E  S  F  Q  A  D  D  M  V  E  D  D  S  D  S  T  Y  L  H  E  N  K  L  D  L  S  D  D  E  I  E  D  W  *  F  E  A  V  F  E  L  V  S  T  Y  S  P  C  G  L  F  F  T  C  K  L  C  I  L  L  K  F  C  K  F  F  R  G  N  N  T  T  S  L  Y  S  L  K   </second_frame>
            <third_frame>   F  G  Q  S  I  C  I  I  L  I  Q  :  G  *  N  T  C  Q  S  *  M  S  L  K  V  L  L  R  G  *  E  S  M  D  *  L  L  Q  R  *  R  D  H  R  L  Q  S  Y  S  *  L  M  I  F  L  W  *  M  *  E  L  R  M  E  G  F  K  G  V  *  P  F  L  C  N  L  S  A  F  Q  Q  L  *  *  S  Q  T  M  T  R  M  S  L  Q  T  L  A  H  A  A  G  K  N  S  F  Y  L  F  I  V  L  G  L  V  R :   S  T  S  T  L  S  L  S  I  Q  S  R  K  H  L  Q  L  Y  A  E  R  S  S  L  K  L  A  L  I  R  L  I  *  *  P  N :   Y  G  R  L  N  N  H  H  A  A  I  S :   V  K  C  L  L  I  G  V  T  C  I  I  A  *  P  H  Q  I  R  *  L  W  Q  P  R  L  G  L  P  L  N  G  L  D  A  E  H  L  K  V  S  K  Q  T  T  W  L  K  M  T  R  I  A  P  I  C  T  R  I  S  W  I  C  P  T  M  R  *  K  I  G  S  L  K  Q  C  L  S  L  Y  Q  H  I  V  H  V  G  S  F  S  L  V  N  Y  V  Y  C  *  N  S  V  N  F  L  G  E  T  I  Q  L  V  Y  T  H  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030D08.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143049" stop="143082"/>
                    <exon start="143190" stop="143497"/>
                    <exon start="143856" stop="143963"/>
                    <exon start="146095" stop="146130"/>
                    <exon start="146714" stop="146929"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWPEHLHNSNSGLKYMSKLDEFEGFVERVRKYGLTSPTLKGSQASVILLVDDLPVVNVRAAYGRLQRCLTLLVQFVRIPTAIVITNYDKDVSADFSTRCWEELLLSLHSAGACKVNFNPVTVNSIKKTLTAICRKEQLEVGADSIDLIAKLWEVEQSSRRNKRQMFTHWGDLYNSLTTSNQIVMATEIRPSLKWLGCRASESFQADDMVEDDSDSTYLHENKLDLSDDEIEDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 374 chains have been computed
$ 
$ memory statistics:
$ 2403296 bytes spliced alignments in total
$ 230 spliced alignments have been stored
$ 10449 bytes was the average size of a spliced alignment
$ 45680 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1691 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 430 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:28:06
-->
