<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:16:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588804" ref_strand="+" ref_description="SGN-U588804 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>acaatcaacaaagaaagttgtgtattattgcattttaattgaacattcacaaccttgagttgtaacaaaactctactcaaaattaagttataaaccacctcaagttaagagctctcatccattttaatacagaaaaattacacaacatcaaatcaattgcattcgcttccacgttggacataatctgcaaaaaaatgtttataacatgttccttcatgaggagcactgtcattctccggttgcatacttgtaccattagcaacccgttgcagcccttgtgaattgagagcagaagtgtcttactttcaggataaatgacagcttaaaactgagttgcagaacatgttaaatggggctagcatgaagaaatgggatcaataccaccaatagcaacccaaaacattcagtttattcccaaatccaacttctcattatcatcttttcctcaactgagagcctcttccaactgccttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2560" stop="1485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2260" g_stop="1785" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U588804" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2260" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACATTCACAACCTTGAGTTGTAACAAAACTCTACTCAAAATTAAGTTATAAA-CACCTCAAGTTAAGAGCTCTCATCCATTTTAATACAGAAAAAATACACAACATCAAATCAATTGTATTCGCTTCTACATTGGCCATAATCTGCAAAAAAAATGTGTATAACTTGTTACTTCTTGAGGAGCACTGTCATTCTAGGCTTGCACACTTGTACCATTTGCAACCCATTGCAGCCCTTGTGACTTGAGAGCAGAAGTGTCTTACTTTCAGGATAAATGGCAACTTAAAACTGAGCTGCAGAACATGTTAAATGGTGCTAGCATGAAGAAATGGGATCAATGCCACCAATAGCAACCCAAAACATTCAG-TTAATCCCAAATCCAACTTCTCATTATCATCTTTTCCTCAACTGAGAGCCTCTTCCAACTGCCTTCATA</genome_strand>
        <mrna_strand>ACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACATTCACAACCTTGAGTTGTAACAAAACTCTACTCAAAATTAAGTTATAAACCACCTCAAGTTAAGAGCTCTCATCCATTTTAATACAGAAAAATTACACAACATCAAATCAATTGCATTCGCTTCCACGTTGGACATAATCTGC-AAAAAAATGTTTATAACATGTTCCTTCATGAGGAGCACTGTCATTCTCCGGTTGCATACTTGTACCATTAGCAACCCGTTGCAGCCCTTGTGAATTGAGAGCAGAAGTGTCTTACTTTCAGGATAAATGACAGCTTAAAACTGAGTTGCAGAACATGTTAAATGGGGCTAGCATGAAGAAATGGGATCAATACCACCAATAGCAACCCAAAACATTCAGTTTATTCCCAAATCCAACTTCTCATTATCATCTTTTCCTCAACTGAGAGCCTCTTCCAACTGCCTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574014" ref_strand="+" ref_description="SGN-U574014 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2711" stop="1925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2411" g_stop="2225" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U574014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2411" e_stop="2225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTT</genome_strand>
        <mrna_strand>TCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591505" ref_strand="+" ref_description="SGN-U591505 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15240506|ref|NP_199767.1| (e_value=2e-51) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G49560.1 (e_value=1e-53) | Symbol: None | expressed protein, similar to SP:P40389 Rapid response to glucose protein 1 {Schizosaccharomyces pombe} | chr5:20128187-20129011 REVERSE | Aliases: K6M13.11, K6M13_11; ">
      <seq>caattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttgaggttcttcctgttaggaggtggaaagaagatagcttttgttatggctcatttgagaagatggaagaaggaatctgctttcttcaagagagccaagaagctttttgatgtccaaatcatacataccgagcctccgcccgatgggtctagggatttgggggtggttgtatacccttttcaccggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3470" stop="2101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3170" g_stop="2400" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U591505" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3170" e_stop="2400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCGATGGGTCTA-GGA-TT-GGGGTGGTTGTATA-CCTTTTCACCGGGAAAA</genome_strand>
        <mrna_strand>CAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCGATGGGTCTAGGGATTTGGGGGTGGTTGTATACCCTTTTCACCGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577230" ref_strand="+" ref_description="SGN-U577230 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|15240506|ref|NP_199767.1| (e_value=6e-31) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G49560.1 (e_value=5e-33) | Symbol: None | expressed protein, similar to SP:P40389 Rapid response to glucose protein 1 {Schizosaccharomyces pombe} | chr5:20128187-20129011 REVERSE | Aliases: K6M13.11, K6M13_11; ">
      <seq>aattgattgataattatttaaacaaaaaaatcaatccttttggttttaaattcgttattaccatctggcgtccttcaaattctttggcaacttgaccattttatattctatatttatggtaatactactttaccatttatattaccaaaaaaaaataaaaaataaaaatttgttgttagggcaagactccgcagactgggtcggataaacccctcaagaaccccggaatcgccgccgcctgtcacatgacttctccaattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3725" stop="2284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3425" g_stop="2584" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U577230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3425" e_stop="2584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</genome_strand>
        <mrna_strand>AATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576634" ref_strand="-" ref_description="SGN-U576634 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157348128|emb|CAO22838.1| (e_value=1e-118) unnamed; (*ATH) AT4G36610.1 (e_value=3e-106)  Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase (Pseudomonas fluorescens) GI:1871461; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr4:17265396-17... ; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=1e-55) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220; ">
      <seq>ctcgcactccagcaactcagtggagttaatggtgttttattctattccagtaacatcttcaaatcagctgcaagaggtgatgaactggagaattagacaacaaaaagtcgggaccacatctgatatcaggatgaagtttttgtagtagattcaagtaaaataggaatatcatccagtaaagcagcaacatttggtattggggctattcaggtcatcgtcactggtatctctgcatcactggtggacaaggcgggacgcaggctactcctcattgtatcctcatctgtaatgactgctagcagcttgcttgttgcaatgtcattcttcctgaaggagttcacctctgaaaattggcattcattctttgcagtattgtctctggttggacttgtggccttggtgatggcatttggtgttggattgggatccataccttggatcataatgtctgagattctgcctgtaagcatcaaaagtctgggtggcagtgttgcaactttggccaattggttttcagcatggattgttacaatgacagcaaatttgcttttaacttggagttaaggaggaacatttgctatctatgcactggtatcagcttttacggtggtttttgtgaagctttgggttccagaaaccaaaggaaaaacactggaagaaattcagcagtccttcagatgatacaaaataaaattgaggatgtaaggaactgcttgagacacttgttataaacgcaaggtcgttctaggtgaaccagatgccctgccttgtctatgccatgaaatgtagtcttctcacccagttgatgtttcatgttctgagcaagctccaaattgaaaatttgatcattctcaccccagaggagatgtattctctgtggaaaatttggaatacttgtgtctttgttgctcaccaccaacccttctagcagctctcctctttcctttctgttggtgaacattacctcgagaaaatctctatgaagacgatcagggaaccaaagcttcttgtaagcagccacttttagcagggccttaagacccttaacagaggtaggcagcagcagctccgaagaagatgaaaatcccaaaccattgagcgtggtagtgctaatggaatcagtcatcgctaatatcgatccagacaccaccaacgcctcaactaaatctggaaacatttccgccatcttaaacgccaccattcctccataactaaatccaaccactacgcatttttccacgcctaatttcctcagccctttacccaaacactctgcttgaaaacccggcgatctatcggagctatccgtaactgatccgccgaagaaaagtaggtccggtacataaacagagtattttttagttaatgcaccgatttgaaattgccacgtcactattccttcgccggcaaagccgtggattagtacgaccacgggtttgttcgggtcgggttcggtggtggaatcaggggaaatagcatattggttgttggagagaggagtagtggttgtgatttttttgtttttcttcgttttttgaattatggtttcagaaggaacccaaaaattcataattgtgcctggttctatctctatactatgaggtctgattccagctaatttcattaggccatgtaacaatggtttttgtgcttcaaccaagttcaccatttttttatttgcaagaaaaatgtttcttgtgtacggaggaattaaggatagaagagatgagaggaaggggatttttaaagtaaggttaggtgttgagttgttatccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="28302" stop="22090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28002" g_stop="27933" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27932" i_stop="26899" i_length="1034">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26898" g_stop="26806" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="163" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26805" i_stop="26591" i_length="215">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26590" g_stop="26544" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="210" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26543" i_stop="26470" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26469" g_stop="26407" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="273" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26406" i_stop="26322" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26321" g_stop="26262" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="333" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26261" i_stop="26137" i_length="125">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.073" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26136" g_stop="26077" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="393" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26076" i_stop="25951" i_length="126">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25950" g_stop="25891" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="453" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25890" i_stop="25455" i_length="436">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25454" g_stop="25340" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="568" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25339" i_stop="25262" i_length="78">
            <donor d_prob="0.533" d_score="0.98"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25261" g_stop="25133" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="697" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25132" i_stop="24803" i_length="330">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="24802" g_stop="24694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="806" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="24693" i_stop="24456" i_length="238">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="24455" g_stop="24388" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="874" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="24387" i_stop="24299" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="24298" g_stop="24209" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="964" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="24208" i_stop="23203" i_length="1006">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="23202" g_stop="22389" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1778" r_length="814" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U576634" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576634" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28002" e_stop="27933"/>
          <exon e_start="26898" e_stop="26806"/>
          <exon e_start="26590" e_stop="26544"/>
          <exon e_start="26469" e_stop="26407"/>
          <exon e_start="26321" e_stop="26262"/>
          <exon e_start="26136" e_stop="26077"/>
          <exon e_start="25950" e_stop="25891"/>
          <exon e_start="25454" e_stop="25340"/>
          <exon e_start="25261" e_stop="25133"/>
          <exon e_start="24802" e_stop="24694"/>
          <exon e_start="24455" e_stop="24388"/>
          <exon e_start="24298" e_stop="24209"/>
          <exon e_start="23202" e_stop="22389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTGGTCAGTTCCGTTCCTTGATTATCTGTTAGAAATGCATACCTGAATTAGCAATAGGAGCGGGGATTTTCCATGGTGCGCACCCAAAGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAAGAAAAAGAAATGCATACCTGAATCATCAAATGATTTGAAACTGGCAGTTACAAGTATTATCACACCATTCTTTTTGTTCTTTACTCTGGCTGGTAGAAACAGAGTAAGTAACAACCCGGAGAGCAGAAATGGGAAAAAGAATTCCACGTTTTGCATGAAGAGTATAATGAATTTCTTCCTCTGCATCCTAGATAACACCCTGCAATAAATATGGGATGACGAAAGACTTCGTTTTGTGTGAGGGGGGAGAGCTCAAAAGACAAAGTTTGAAGTTTTGAACTATCAACTTATTCCATCTAAAAAAGAAACTATCAACTTATTAATAAGAAAAGTATTAAAGCTATTAACTGTAAAGGAACCGTAGAATGTATATCACCTGGTAAGATCAAGCCTACTTTTAAGGTACTCTTGAAAGAAAAAACAATAAGTTGACTAAACACAATAAACAGTTTCTTTTTAAGTTGTTTTGAATTTTTATTTTGATGTTTGTGAAAACGAAGTTTTGATATTTATGTCCTTTTCAAATTCCTTCCAGTACTTCTTGCTTTTGCTTGAACGTATGCCTGGAAAATCTGCTTGATGGAAATTGATATGGAACTTAGCCATATTTCATGAGTGTCCATTCAAATATGCCATGCCTTTTGAACTATCATTTTCATTTTGTTGGTACCTGAGAAATGATTCCCATGTTGTGATGATCTCTCAATCTAAGATAATATACCATTATCCAGATTCACATACACTGCAGTGCCAAAAGGTAATATGCCCTTAAGCAGATCGACATATACTACAGTTTGGGTAAACAGCTTTACCAAACACCAGCTAGAGACTTGTATATTCATTCATGACCCAACCATGTTGTAGCATGATATCCACCTTGAACAAAATTTTTGATTACATTGTCAGCAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAGGCAAGTTACTACGAACTATTGTCTTAATTCTACATTATCGCGTGCAGTATCCCACTCTAAGAAGGTATCACGAGCCTTCTCTTAATTTGCCAAATTAATTCCAGGTGTATCAGAATTAGACTTTATGTATAATACCGCCTAATCATAGAGACACTATGAAATGTTACAACTGGTTTGACATAGGAGTTTAATTGTAATGCTCTTCAAATTGGCAGGAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAGGTAAGCTGGTTCCCTTGGATCTAGTCTTAGTTTATATTTATATATTATTCCAAGTTGATGTACATCTTTTATAGGTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATTGTAAGCCCTTCCAGAAATTTCACATGAAGTTTCTATTGCTGAAAAATAAAACAAATGGATAACTTGATTATACTCTTTTCTTTAGGTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAGGTCAGTTGAATTTACATTCATAATAATTGATCAAGCAATTTCCTGAATTTAATGAGATCTCTTTCTTTCTGTCGGGATTGACTTTCTTTATATGTCATTCCACAAACTTTTTCTACTCAATCCAGGAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTGGTATAGTTCCTGTCTTACCTTCTATTGTTCCAACCCTATGATCCTAACCCCCCCCCCCTGCTCGCATCTCTGTTCCATTGTTGCATTCTAGCATATCTGAGACACTTAACGTATTAATTTTTACAGGCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAGGTATAACAAAGCTAATCTATAGTTCGGGAGACCAGGAAATATATATGTTCCTAAACATAATTAAAAATAGAGCATAGATGAAACTTGTAACATTTTCCGGAGAATGTGGTTGAGAAATTTGAGAAAAACTGACATACAGATCACCCCGTTAAAGGAGATAATATTAGTTTTAAAGGAAGATCAAGCATTATTGCAGGTTTCTTTAACATATTAAGTAACTGCCAGGACAAATTTTTGGTTCAAACTTTCTTCCTAGAAAATATTCTTACTGAACTTGAGATGTTATTCAAGGACACTAGCATAGGTTTTACGATTCTCTTTATTTTTTGGGATTTAAGAGCCTCACTGCTCTAATAAATAGTCCTATTGCACGACAATAGGAAGAATGATCTGTTTTTCATCTCTTGAGACATCAAGTTTTTAATTGGTTGTGCAGATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAGGTTTCTCTCTCTCTCTCCGTTTCTCTATTGGTATTCACACCATGCTTGGAGTGACTCTAAAGACTGTAAATTTGGCAGGAACATTTGCTATCTATGCACTGGTATCAGCTTTTACGGTGGTTTTTGTGAAGCTTTGGGTTCCAGAAACCAAAGGAAAAACACTGGAAGAAATTCAGCAGTCCTTCAGATGATACAAAATAAAATTGAGTAAGACGAGTATATGGAACAAGTGATGCAATTCCAGCCTGACTGAAAAGTTGTTTTTTTCCACTTCACCATGTACCGCTATATATTGTCCAAGAAGTTCTTCTCGTGTACTGCTAGTGCTTGTGGAGCTAACATCTGCAATTTGCAATATATGTTTGTATATATTTGTTTAAGATGATGATTTCAAATTCTGAACCCAAATTACATAGTAACTAATATTACAGAGGAAGCACATAGTTGTTTTCCTTTTCATTGACAAAAAGTTACATGATATTACGATAGTGAACTTTGCAGTAGTGTCCTTCACTTTTGGGCTTTTTCTGCATGCAGGGATGTAAGGAACTGCTTGAGACACTTGTTATAAACGCAAGGTCGTTCTAGGTGAACCAGATGCCCTGCCTTGTCTATGCCATGAAATGTAGTCTTCTCACCCAGTTGACTGGCATCAAGTAAAGCAAAACAATCAGGTTTATTCAAATTCTCTGTGGCACTTGTACTAAATTATTGTTGATGTAGTAGTTTGAATTATATACATGGGCCATATATTAAAATGGTGCATTATTGAACTACTTATTACTATAACTTCTATGTTAAAAAGTTTCTAATGTGAGATCTTGTATACTACTCCTGGAGCTCATATGTTTGTTTGAGTATATAATATAAGCCTGAAAACTTACTGTTTCATGTTCTGAGCAAGCTCCAAATTGAAAATTTGATCATTCTCACCCCAGAGGAGATGTATTCTCTGCCAAAAAAAGAAGTTGGAAAAATGGCTATGTTTTCTAGTTTTTTGTGTGAAATGTTGAAGAATAGAACTCATGAAATTCCAATTACCTGTGGAAAATTTGGAATACTTGTGTCTTTGTTGCTCACCACCAACCCTTCTAGCAGCTCTCCTCTTTCCTTTCTGTTGGTGAACATTACCTGACATATCGTCAAGTGAGGGACATTTTAGATATGAATCACAACGATGACATCAATGTTGTTGCATACTTGTATTAGTATAAATACAAAAATTCCTTTCTCTTTTTACCCCCTCTCTGGGAGCTCCCACCTCTTTTGGTGACTCGAACTCACAACCTTTAGGTTGAAAGTGAGAAGTGTTTACCATTCGAGCAACACTCTCTCGTCTATAAATACAAAAATTCCTCTCCAAGATTATTAATTTTATCTCACCAAAGTTATGAACTTGCTCTTTTAATATTATCGAAAGAAACTTGAGAGACATTCAAGAATTTGGTTAAGAAACTTGGAATTTTATTTGTCTTGCACTAACGGGTTTGAAATTGACGAAGTGACTGAAATGGGCTTTTTAGTCACTTGGTTTATTCACATATATATGACGATAAAAAAGTAGAAGATAGTTGATCGTAAAACGGTAAAAGCAGTTAGGTCTAGTTGGTTGAGCAAACTGGCAGTGATGTCAATAACATATGGCTGGATGACATGTGTAATAATGAACTCACAAATTATGCAAGTCTACGTGGTGCCCCCCCTTTTTTTTTCCTTCTTTGTTGACAAATGTGTAAAATGTAGTTATGGCCTTGTAGGAAAATGTATGCCATAATTTCTTCAACTTATTAATGAATTCAATTGTCTCCTCTCTTATTTTCCCTTTTTTATCTTTTGTTGGCAAAGAAAAATAGTTAGACTGTTGTATATAATTTTGCCTCTACCAAACTTTCAAAGTATAAACATTTTAGTTTGCCGTTAACTGATTCCTCAGTGGAGAGCATTAAAGCCACACGTAAATGATATACTATACTGTGACAACCAACTAACTAGTAATTTTTAGTTTATACATCGGTAAACATGAAGGATTCACGTCCGAATTTACATGAAAAAACTAAATATTTTGATACTCATGATCGATCCATGTGAAACAGAGAGAGTTGTAACTTTTTGTTAAATAAAAGAAAAATGAACCAACCTCGAGAAAATCTCTATGAAGACGATCAGGGAACCAAAGCTTCTTGTAAGCAGCCACTTTTAGCAGGGCCTTAAGACCCTTAACAGAGGTAGGCAGCAGCAGCTCCGAAGAAGATGAAAATCCCAAACCATTGAGCGTGGTAGTGCTAATGGAATCAGTCATCGCTAATATCGATCCAGACACCACCAACGCCTCAACTAAATCTGGAAACATTTCCGCCATCTTAAACGCCACCATTCCTCCATAACTAAATCCAACCACTACGCATTTTTCCACGCCTAATTTCCTCAGCCCTTTACCCAAACACTCTGCTTGAAAACCCGGCGATCTATCGGAGCTATCCGTAACTGATCCGCCGAAGAAAAGTAGGTCCGGTACATAAACAGAGTATTTTTTAGTTAATGCACCGATTTGAAATTGCCACGTCACTATTCCTTCGCCGGCAAAGCCGTGGATTAGTACGACCACGGGTTTGTTCGGGTCGGGTTCGGTGGTGGAATCAGGGGAAATAGCATATTGGTTGTTGGAGAGAGGAGTAGTGGTTGTGATTTTTTTGTTTTTCTTCGTTTTTTGAATTATGGTTTCAGAAGGAACCCAAAAATTCATAATTGTGCCTGGTTCTATCTCTATACTATGAGGTCTGATTCCAGCTAATTTCATTAGGCCATGTAACAATGGTTTTTGTGCTTCAACCAAGTTCACCATTTTTTTATTTGCAAGAAAAATGTTTCTTGTGTACGGAGGAATTAAGGATAGAAGAGATGAGAGGAAGGGGATTTTTAAAGTAAGGTTAGGTGTTGAGTTGTTATCCGTT</genome_strand>
        <mrna_strand>CTCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG.......................................................................................................................................................................................................................GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG..........................................................................GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT.....................................................................................GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG.............................................................................................................................GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG..............................................................................................................................GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTTAAGGAG..............................................................................GAACATTTGCTATCTATGCACTGGTATCAGCTTTTACGGTGGTTTTTGTGAAGCTTTGGGTTCCAGAAACCAAAGGAAAAACACTGGAAGAAATTCAGCAGTCCTTCAGATGATACAAAATAAAATTGA..........................................................................................................................................................................................................................................................................................................................................GGATGTAAGGAACTGCTTGAGACACTTGTTATAAACGCAAGGTCGTTCTAGGTGAACCAGATGCCCTGCCTTGTCTATGCCATGAAATGTAGTCTTCTCACCCAGTTGA..............................................................................................................................................................................................................................................TGTTTCATGTTCTGAGCAAGCTCCAAATTGAAAATTTGATCATTCTCACCCCAGAGGAGATGTATTCT.........................................................................................CTGTGGAAAATTTGGAATACTTGTGTCTTTGTTGCTCACCACCAACCCTTCTAGCAGCTCTCCTCTTTCCTTTCTGTTGGTGAACATTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAATCTCTATGAAGACGATCAGGGAACCAAAGCTTCTTGTAAGCAGCCACTTTTAGCAGGGCCTTAAGACCCTTAACAGAGGTAGGCAGCAGCAGCTCCGAAGAAGATGAAAATCCCAAACCATTGAGCGTGGTAGTGCTAATGGAATCAGTCATCGCTAATATCGATCCAGACACCACCAACGCCTCAACTAAATCTGGAAACATTTCCGCCATCTTAAACGCCACCATTCCTCCATAACTAAATCCAACCACTACGCATTTTTCCACGCCTAATTTCCTCAGCCCTTTACCCAAACACTCTGCTTGAAAACCCGGCGATCTATCGGAGCTATCCGTAACTGATCCGCCGAAGAAAAGTAGGTCCGGTACATAAACAGAGTATTTTTTAGTTAATGCACCGATTTGAAATTGCCACGTCACTATTCCTTCGCCGGCAAAGCCGTGGATTAGTACGACCACGGGTTTGTTCGGGTCGGGTTCGGTGGTGGAATCAGGGGAAATAGCATATTGGTTGTTGGAGAGAGGAGTAGTGGTTGTGATTTTTTTGTTTTTCTTCGTTTTTTGAATTATGGTTTCAGAAGGAACCCAAAAATTCATAATTGTGCCTGGTTCTATCTCTATACTATGAGGTCTGATTCCAGCTAATTTCATTAGGCCATGTAACAATGGTTTTTGTGCTTCAACCAAGTTCACCATTTTTTTATTTGCAAGAAAAATGTTTCTTGTGTACGGAGGAATTAAGGATAGAAGAGATGAGAGGAAGGGGATTTTTAAAGTAAGGTTAGGTGTTGAGTTGTTATCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575594" ref_strand="+" ref_description="SGN-U575594 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147792214|emb|CAN72983.1| (e_value=3e-102) hypothetical; (*ATH) AT1G19450.1 (e_value=2e-104)  Symbol: None | integral membrane protein, putative / sugar transporter family protein, similar to GB:U43629 GI:1209756 integral membrane protein from (Beta vulgaris); contains Pfam profile PF00083: major facilitator superfamily protein; contains TIG... ; (*SWP) sp|Q93YP9|ERDL4_ARATH (e_value=2e-103) Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450; ">
      <seq>ttttttcacctttatcctaaacggaaacagaagacacggaacaacaatgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatgggaaggctgttggaaggttttggtgtcggcattatttcctatgtggtgcctgtatatatagcagagatttcacctaaaaacatgaggggagttcttggatccattaaccagctctctgtaacagtggggattatgctggtatatctgttgggattatttgtaagctggagagtgcttgctgttataggaatgttaccatgcatggttttgatacctggtctattttttatacctgaatctcctcgttggttggctaaaaatgggctgaatgaagattttgaacttctttgcaagttctacggggatttgacacagatatatcctcagaagtgaatgagatcaagaaatctgtgagatcatcaactaaaaagctaccattcgggtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="31056" stop="27877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="30522" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30377" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="29787" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29529" g_stop="29470" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="448" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29371" g_stop="29306" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="514" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29305" i_stop="29215" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29214" g_stop="29149" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="580" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29148" i_stop="29026" i_length="123">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29025" g_stop="28950" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="656" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28949" i_stop="28593" i_length="357">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28592" g_stop="28528" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="721" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28527" i_stop="28449" i_length="79">
            <donor d_prob="0.351" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28448" g_stop="28356" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="813" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28355" i_stop="28223" i_length="133">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28222" g_stop="28177" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="858" r_length="45" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U575594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="30522"/>
          <exon e_start="30439" e_stop="30377"/>
          <exon e_start="29876" e_stop="29787"/>
          <exon e_start="29529" e_stop="29470"/>
          <exon e_start="29371" e_stop="29306"/>
          <exon e_start="29214" e_stop="29149"/>
          <exon e_start="29025" e_stop="28950"/>
          <exon e_start="28592" e_stop="28528"/>
          <exon e_start="28448" e_stop="28356"/>
          <exon e_start="28222" e_stop="28177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTGGTAATCTTAAGTGTTCAACTTCTCTACTTGTTCTTCTTGAAGTTATGGTTAATAGTCCTGCTTGGTGAATCTTCTTGCTTGTTATCTGTAGGTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAGGTTGGTTTTGTATTGGGATTTAGAGATATCCCTGGTCACTCAATTCTCTAGGTTTTATGATATACAAATAAAAATGGCTCATTTTCAATTGAAAAAAGAAATAATTTGATCTCTTGGCATTAGCTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAGGTGAGCAATACAGTTTTTCTTTTTAAATTAGCTTAATTGCAATAGTTTCCCTAACCATGTGGTGATTGACAAACTGATTGTTATCTTATTAACTTCTCTATTTTAAGATGGTAGAATTAGTAGGATTTTTTTTTAATCAAGTAAGCATTTGACGACGTTCATCTTGTTGAAACAAGTTTTTCATCTTTCTAAAATTCCCTTTCCTTCTTGAAATATTTGAAGTTATTCTTCATCTGCAAGTTCATTGAAGCAACTCAAAAACATTGAATGAGCTGATGTCTTTCTGTTATAATGTGAAGTCATTTGTATACCTGATTTTGAACATATTTATTAATAATCCTTTATGTCACTCTGCAGGAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTGGTATGAGTTCCAAACTTATGTTTGTCACAACTAGGTTTTCATTTTTACATTATACTGATGTCAATGCTGCATTATTTAGGCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCTACGGGGATTTGACACAGATATATCCTCAGAAGTGAATGAGATCAAGGTAATATGTGGAATGTGTTAAATGATGATTTCTCAACTATTTTGAACCCTCAAATTGCACTGCAAAAACTTCTTGCAATGCAAACTACTAAAAATGTGTTCATCATCATTTGATTCTCCTGTCCTTGTCTCAGAAATCTGTGAGATCATCAACTAAAAAAGCTACCATTCGGTTTTCTG</genome_strand>
        <mrna_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACAATGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG...........................................................................................GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG...........................................................................................................................CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG.....................................................................................................................................................................................................................................................................................................................................................................GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG...............................................................................GCTAAAAATGGGCTGAATGAAGATTTTG-AACTTCTTTGCAAGTTCTACGGGGATTTGACACAGATATATCCTCAGAAGTGAATGAGATCAAG.....................................................................................................................................AAATCTGTGAGATCATCAACT-AAAAAGCTACCATTCGGGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568700" ref_strand="+" ref_description="SGN-U568700 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157348126|emb|CAO22836.1| (e_value=2e-71) unnamed; (*ATH) AT1G75240.1 (e_value=4e-60) | Symbol: None | zinc finger homeobox family protein / ZF-HD homeobox family protein | chr1:28244735-28246417 FORWARD | Aliases: F22H5.4, F22H5_4; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=2e-42) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660; ">
      <seq>tttcagatagatagcaaaattaggatttatggaacacagaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaattcagccttgtaatttttcggcatcgaagaagagatttcgaacgaaattcagtcaacaacagaaagatagaatgctagagttcgctgagaaactgggatggagaattcagaaacaagatgaacaagaagtgcatcaattttgtaatgaagtgggcgtgaagagacaagtgttcaaagtgtggatgcacaacagcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcactagtagcaccaattaattctatcacaaaagtctctttaaattccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41248" stop="42953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41548" g_stop="42653" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1106" r_length="1106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-U568700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41548" e_stop="42653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGATAGATAGCAAAATTAGGATTTATGGAACACAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</genome_strand>
        <mrna_strand>TTTCAGATAGATAGCAAAATTAGGATTTATGGAACACAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565128" ref_strand="+" ref_description="SGN-U565128 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348125|emb|CAO22835.1| (e_value=2e-18) unnamed; (*ATH) AT4G36600.1 (e_value=3e-17)  Symbol: None | late embryogenesis abundant domain-containing protein / LEA domain-containing protein, low similarity to SP:P20075 Embryonic protein DC-8 {Daucus carota}; contains Pfam profile PF02987: Late embryogenesis abundant protein | chr4:17263... ; (*SWP) sp|P13940|LEA29_GOSHI (e_value=8e-11) Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum; ">
      <seq>gataaataacaaagcacaacagtctaagcaaagtgattcttggactgattgggtctcttccaaattggcgcagcaccaagacgatgcgaaagatgaagcccaaagattagcggatagagcaaagggaactgcatcaaatgcaagagattctgttaattctgctgcacatgaaacccaaaggtatggttctcaaaaggctaaggagatggctgatgtagcatctgacaaatttggtgatgctaaaaattatgcgtccaagaaagccaatcaagctatggatgcagcagcagataccgctagtcatgccaaagaaagaggaaaagaaaatgcgtatgatgcttatgcctatgcatcggagaaaaccggccaagccacaaaaacagctgccgagtttgccaaggaaaaggctcatggtgcttatgcctatgcatctgataaggcaggtcaagccaagaacattgcttcagatacggccgccaatgctaaagaaagtgccaaaaataaggctcatgatgctactgattttgccaaagagaaggcacatgatgcttatgcttatgcttctgacaaggcaagtcaagccactaacattgcttctgacatggccgctgatgccaaagaaagcgtcaaacataaagcttacaatgccaaagatgtcgcctctgagaaggcgcatgattccatgaatgctgcttccggaatgggtagttcagctaggaataaagcatcggatgcttatggttttgcttctgataaagcaagtgatgcgaaagaaattgggaaagacaaagcgtatgatgcttatggatttgtatctgaaaagatgaaccgagcaaggggacgaggcttccaataaagcatccgatgcgtatgagtacgcctctagtaaagccgatcaaaccatagaaatggctaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="47342" stop="43901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47042" g_stop="46971" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46970" i_stop="45326" i_length="1645">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45325" g_stop="45228" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="170" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45227" i_stop="44948" i_length="280">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44947" g_stop="44201" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="918" r_length="748" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U565128" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47042" e_stop="46971"/>
          <exon e_start="45325" e_stop="45228"/>
          <exon e_start="44947" e_stop="44201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATAACAAAGCACAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCAGTAAGCTAATTTATTACTCCCTCTATTTATAACATAACATTCATTCAACCCAATTGATTTTTTTATAAATAAGTATGTCTTTGTGTTTGGATACAACTGTTAAAAGGAACAAAACTTTCTCTTTGTCATGTTATACCCGTCTACAATAATAATAATAATAATAATCAAGATGAATTAACGAAAATTTTCTTGTTTACACTTGTAAAACTAGTTACGAGTACTATGTCAACTTTTATAAAAAGTTTCTTTAAAGGCTAAATTAGTAATTTTCACAAGGAGAAAGGGAACAAGTAATATGGCAGAGGGAGTACTAAAAGGGCGTTGATAAAGATTTTTTTAAAATTAAAATATGCGAAATATCCTCGAAGCGTTTGCAGAAAAAATATGAACTGAAAGTTATATTTATGTTTACTTTAAAAAAAAAGGAACACAAAACTGCGGAAAAATTAGATTTATACTTAATTAAAGTTGTCTTAGAGAGTACGAATAATATTAGGGTAAAAGCCAGAAAAATATGGTTAAACCAAAAATGCCTTTAAGGTTGTTGGTTCAAAACTGTTTCTGGCTTATAAATATTTGCTTTATAAGCATTTTTCATTTTTATCAAATGCATAAAAGTAACCCAAAAAAAAAACAAGTATGAATTTGTTTGACCAACGTATAAACTTTTAGCTATTGCCACAAAAATTAAGTGTAATAATATCTTTTTACAAATAATTTAGATTAAATATAATGTTTTTATCACTACAACAAAAATAACTTTAAGCGATAAATATTTATATTAATAAAGAGGGCTAATTGTCACGAATATTGTTGAAGTTTTACGAGCATATCAAAGAATGTTGAATTTTAATTGCAACTAAAAATATATAATTAGCGGCAATTAACTTAATTGCCGCTAACTGATATTTTTTATGTTAATGTAGTGTATGTAAGTTTCCCTTTATCCTTCTTTGCTATCTTCGATGAGTCTCTGCCTTATTTGAGCAAGTGATACTCTACAAATCTTTTTGGGCTCGTAGACATAACATTTGGATGCCTTTTTACAAAACTAGTCCCTAGCTAAATGTAGGTTCAAAATTTGTATCTTTCTCTAGGATACACTCTTAAGACAGTGGATATAGAATCTATTTTGAGCACTGTTCAACATGACCCTTGATTTGCATAGATAGAGTCTCCATTGTCAACCTTTTGTGATTGTAACATTAAAATAGGTAGTAGCTCATGGCTTTTTCGTTGTATGACGATCAATTAATTCTTTGAGAAATCTATTCTTAAGTGATCGAAAAAATTTCAAAATGGAGGTAATTGATAAACAAGTTTTTACAAATTTCATTTCCCCTTTTATAAATGGACAAGTGTAAGTGTCATACAATTTATTCGGAAAACCTTTGAAAGAAACTCAAACATATCCGAAGCATTTTCAGGTGAAGGTTTGAAACATTTTATTTGAATTGTTTAGGCAAATGTTGGTTACTTCTTGTTACGTACGCTTTTACAACAAGTGAATACTGTAGTAGTTTGTTTCATTATCGGACATCGCCTTCTGTTCAAATGTCGATCAATCAGTTCTAAATTGGGCGCAGGTCTCTGTAAGTACGCTAATCTAAATAACTATTTGTGGGATTACCACTCTTATTTTTAGGCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATGGTACCTATTCGTCTTGTCTTCAAGCTTTGTTTGGGTGGACTTATTTTAAGTATTTTTTTTTGTGCGAAAAGTCATTTTTAACACTTTTCTAGTGTTTGGGTAAAGCAAGCAAGTGTTTGCACTTGTTTTCAAGTCAGAACAATACAAATAAGTCGAAGTCAAGAACTTAGATTCTTTAACTTATGAACTATAAGCCCATCCAGACACGCTCTTCTCTACAAGAAACCGAGAGACAACTTGTATTGCAAAGAGTTACTAATAATCAGATGTTCTTTTGCAGAAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGG-GACGAGGCTTCCAATAAAGCATCGGATGCGTATGAGTACGCCTCTAGTAAAGCCGATCAAACCATAAGAATGGCTACCG</genome_strand>
        <mrna_strand>GATAAATAACAAAGCACAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGGCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG........................................................................................................................................................................................................................................................................................AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGGACGAGGCTTCCAATAAAGCATCCGATGCGTATGAGTACGCCTCTAGTAAAGCCGATCAAACCATAGAAATGGCTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604103" ref_strand="+" ref_description="SGN-U604103 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|14149112|dbj|BAB55653.1| (e_value=8e-34) bg55 [Bruguiera gymnorrhiza]; (*ATH) AT1G27910.1 (e_value=3e-20) | Symbol: None | U-box domain-containing protein, contains Pfam profile PF04564: U-box domain | chr1:9720727-9724701 REVERSE | Aliases: F13K9.2, F13K9_2; (*SWP) sp|Q9C7G1|PUB45_ARATH (e_value=2e-19) U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45; ">
      <seq>acatctccaaaagatcttttgatagagaaaagatccatcaaaaaacagctggagaaaattggggagggtgatccaccaaaaaggaaaatcttactgttctttctgagtcttctcaacaaaaatggcaaatctattgtggcagagcacacagagaatgaatctctgcagcatgaagactcccttgaatttgaagtggaatctcgtctgaaatgtaattataatgatgctcaaagggatatcttcaacggctctcgacttccggatgagttcaaatgtcctttatcatcaagactaatgtacgatcccgttgtcattgcttctgggcaaacatatgaaagattttggattgaaaaatggtttgctcaaggtaatgatacatgtccaaaaaccaaaaggaaattggttcatttgtcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="66138" stop="67156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66438" g_stop="66856" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-U604103" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66438" e_stop="66856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGGATCTCTGCAGCATGAAGACTCTCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGAGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTATGATCCCGTTGTCATTGCTTCTGGACAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</genome_strand>
        <mrna_strand>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGAATCTCTGCAGCATGAAGACTCCCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGGGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTACGATCCCGTTGTCATTGCTTCTGGGCAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565530" ref_strand="+" ref_description="SGN-U565530 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157348123|emb|CAO22833.1| (e_value=7e-53) unnamed; (*ATH) AT4G36550.1 (e_value=3e-32)  Symbol: None | U-box domain-containing protein, low similarity to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582200; contains Pfam profile PF04564: U-box domain | chr4:17245403-17247585 REVERSE | Aliases: AP22.63, AP22... ; (*SWP) sp|O23225|PUB5_ARATH (e_value=3e-31) U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5; ">
      <seq>ttctaaagaagctattgctataatcgaagtgttgtcccgccaccaaaactgtcaccataaaattaccatgtctggtgcactacctattctcctggagattcttgatgcccacagtagagaattgcaggaatcagccatcaaaatattatgtaacatgtcaggaagtagcaaaattggttccttgattgcaccttcagagttggtcccaaaattggttccttttcttgaagatacagcactcgcaagaaattgtgttatcattttgcatagtttgtgcaacaaagaagatgctagaattgctatagctgaaactgatggatgcattgcagcagttgtgaaactgcttgagcgtgagagtcgcaaggaccaggaacatgctgtggattttcttctttctttatgccttcaacgggttcaatattgtcaactggtaatggatgaaggtgtcatccctgaactcgtctctgtatctattaatggaaacaacaaagcaaaggcaatggctttggagttgctgagactgctgaagggggaatttagtgatactgtagaatcttacgaaccggaaatcgacattcctaaaccccctacctctgactttactcaacagaaatctcattccgaaggaacaggaatttttgggaaatttttctcaaaacgtagttcgactactgccaaaaggataaatagaaagtgatgcggtttgaagatttttgtatgataggatgtgtataatttcacaggttaatctagtttttgttagggagaggcatagacagtaagcatttatattgttatagctgcttgagagttgggatagaaggtgtaattattgttgttgtatctagtttttgtttgtatttaattgatttcactggacaacatattcaggtgtatagtgtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67522" stop="69029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67822" g_stop="68729" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-U565530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67822" e_stop="68729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTG</genome_strand>
        <mrna_strand>TTCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562976" ref_strand="+" ref_description="SGN-U562976 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|7635492|emb|CAB88665.1| (e_value=1e-121) tubby-like protein [Cicer arietinum]; (*ATH) AT2G18280.1 (e_value=3e-107)  Symbol: None | tubby-like protein 2 (TULP2), identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) (Mus musculus); similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (F... ; (*SWP) sp|Q8GVE5|TLP2_ARATH (e_value=2e-106) Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2; ">
      <seq>ggcaccagggagattgttaagactcctgaggaatgtggtaggcttacctttcccatttcactgaaacagccgggtccccgtgaatccccaatccagtgctttattaaacgggacagagctaattcagtttatcgtctctactttggcatgattccatctgaggatgagagggataaactattgttgtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaactgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaacctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgttcttcgtacaagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagacatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgctggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaaattttcagctagtggcagcagttgatccatctcacaatataccagtcgcagaacaagaaaaagtaattttacagtttggaaaaattgggaaagacatcttcaccatggactaccgctatccactttctgctttccaagcttttgcaatctgcttgagcagctttgacacgaaaccagcctgtgaatgatttcgtgcagattgcaaatcaagataagctccctttcttctcttttgttgcttagtaatgttccaaattcatgtagagtccctgagaaagttctcaatgcatggccctctgtataaatgagaatattcgttgtgccctgtgccagtttctccaatagcattctcatgtttactgtttccttgtactaatattatccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="72193" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71896" g_stop="71828" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71827" i_stop="71739" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71738" g_stop="71651" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="157" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71650" i_stop="71430" i_length="221">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71429" g_stop="71300" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="287" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71171" g_stop="70337" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="1123" r_length="836" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U562976" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1122</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71896" e_stop="71828"/>
          <exon e_start="71738" e_stop="71651"/>
          <exon e_start="71429" e_stop="71300"/>
          <exon e_start="71171" e_stop="70337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAGGTAATCACCTTAGTCTATTTTACTTTCCTTTCTATGTATGTTTATGATGTTGATTGATATTAATAGAGAACTTTTACCGTTTAAACCAGCCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCATGTAAGTAATATCCTCTGCCTATCCTGTTTGTGCTGTAAAGATTTTAAGATCCTACTTTAATGGGGAACTTGCACTTAGGCTGATGTACATTCAAGTTAGTACACCAGATAGAAAATTCACAACCTTTTAGAACTTCTAGTGATGTTTGTGGTCAATCTTTTTCATCGGAAATTCTTCCAAGTCAATGAAAGATGCATAACTGATATTTTACTTCACGACAGCTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAGCCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCTTTTCTTCTCTTTGGTTGCTTAGTAATGTTCCAAATTCATGTAGAATCCCTGAGGAAGTTCTCAACGCAT-GACCTTTGTATAAATGAGAATATTCGTTGTGCCATGTGCCAGTTTCTCCAATAGCATTCTCAT</genome_strand>
        <mrna_strand>GGCACCAGGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAG.........................................................................................CCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCAT.............................................................................................................................................................................................................................CTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTTCTTCGTACAAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCCTTTCTTCTCTTTTGTTGCTTAGTAATGTTCCAAATTCATGTAGAGTCCCTGAGAAAGTTCTCAATGCATGGCCCTCTGTATAAATGAGAATATTCGTTGTGCCCTGTGCCAGTTTCTCCAATAGCATTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562974" ref_strand="+" ref_description="SGN-U562974 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348120|emb|CAO22830.1| (e_value=1e-45) unnamed; (*ATH) AT2G18280.1 (e_value=3e-32)  Symbol: None | tubby-like protein 2 (TULP2), identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) (Mus musculus); similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (F... ; (*SWP) sp|Q8GVE5|TLP2_ARATH (e_value=3e-31) Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2; ">
      <seq>gggaaaactttgatagatacgctcacagagaagcccctttcgtcttcctagctcctgaaatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgttatttagcttcatgtcggctctgcttttggttttcgtcggagatagtaccaaaatgctacaagatcgcacattttgattgttttttcgctttcttattccaagggaagttgtagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagatggtatagggaatatatcaaggaggggaacagaaagaaagcattggagcaacagaacccggtcacatatagtccctgatgtggccctttctgatcaaattgaacaagggcaatgggcaaatttaccaccggaacttctttttgatatcatccgtagggttgaagagagtgaggcatcatggcctgctcgatccgcccttctcttttgtgcatctgtttgcaaatcgtggagggaaattaccaaggagattgttaagactcctgaagaatgtggtaggcttacctttccatttcactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73313" stop="71532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73013" g_stop="72753" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85">
            <donor d_prob="0.180" d_score="0.96"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72667" g_stop="72572" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72571" i_stop="72205" i_length="367">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72204" g_stop="71832" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="729" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U562974" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73013" e_stop="72753"/>
          <exon e_start="72667" e_stop="72572"/>
          <exon e_start="72204" e_stop="71832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGGAATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAA</genome_strand>
        <mrna_strand>GGGAAAACTTTGATAGATACGCTCACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGAAATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTATTTAG.....................................................................................CTTCATGTCGGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCTACAAGATCGCACATTTTGATTGTTTTTTCGCTTTCTTATTCCAAG...............................................................................................................................................................................................................................................................................................................................................................................GGAAGTTGTAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTTTTGATATCATCCGTAGGGTTGAAGAGAGTGAGGCATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGAAATTACCAAGGAGATTGTTAAGACTCCTGAAGAATGTGGTAGGCTTACCTTT-CCATTTCACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562975" ref_strand="+" ref_description="SGN-U562975 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348120|emb|CAO22830.1| (e_value=1e-27) unnamed; (*ATH) AT2G18280.1 (e_value=1e-16)  Symbol: None | tubby-like protein 2 (TULP2), identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) (Mus musculus); similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (F... ; (*SWP) sp|Q8GVE5|TLP2_ARATH (e_value=9e-16) Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2; ">
      <seq>ggaaaactttgatagatacgcacacagagaagcccctttcgtcttcctagctcctgaaatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgtttcttagggaagttgcagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagatggtatagggaatatatcaaggaggggaacagaaagaaagcattggagcaacagaacccggtcacatatagtccctgatgtggccctttctgatcaaattgaacaagggcaatgggcaaatttaccaccggaacttcttcttgatatcatccgtagggttgaagagagtgagttatcatggcctgctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73312" stop="71642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73012" g_stop="72753" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72205" i_length="548">
            <donor d_prob="0.180" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72204" g_stop="71942" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="523" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U562975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73012" e_stop="72753"/>
          <exon e_start="72204" e_stop="71942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGA</genome_strand>
        <mrna_strand>GGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGAAATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602761" ref_strand="+" ref_description="SGN-U602761 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348119|emb|CAO22829.1| (e_value=1e-77) unnamed; (*ATH) AT5G03260.1 (e_value=5e-78) | Symbol: None | laccase, putative / diphenol oxidase, putative, similar to laccase (Pinus taeda)(GI:13661207) | chr5:777020-779423 REVERSE | Aliases: F15A17.290, F15A17_290; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=4e-77) Laccase-11 OS=Arabidopsis thaliana GN=LAC11; ">
      <seq>gagcagattgtgcaatgcaaaacaaatggttacagtaaatggcggatttccagggccaactatatatgctagagaaggagatagagttcaaatcaatgttactaactatgtacaatataacttgtccatccattggcatggtttgaaacaatatcgtaatggttgggcagacggtccagcttacataactcaatgccctatccagacaggaaatagctatgtttatgatttcaatgtaacaggacaaagaggaaccttatggtggcatgcacatattctttggctaagggcaactgtctatggtgcaatagtgataatgccacaaaaaggcactcccttcccttttcctcaaccagatagggaagaagtactcgtactaggggaatggtggaatgctgatgttgaagcagttgagaaacaaggaaatgcattgggtattcctcctaatatgtctgatgctcacacgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="84997" stop="86275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85297" g_stop="85431" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85432" i_stop="85517" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85518" g_stop="85762" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="380" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85763" i_stop="85883" i_length="121">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85884" g_stop="85975" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="472" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-U602761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85297" e_stop="85431"/>
          <exon e_start="85518" e_stop="85762"/>
          <exon e_start="85884" e_stop="85975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTGGTAAGATAAAATTAGAAGTAGATGAAAATTGAAGTCTCTCAACTTTCAGATGCTGAAACAGAATGTTTTTGTTCTAATTCTTGTAGGCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAGGTGAGCGTTGGCACTCGTTAATATACATAGAATTTCACCACCATAATTTCTTGAACTTCTCTTGTAGCAAAGAATGAAAGAAATTAAATGACAGCAATGCTTCTATCTGATTGTGATGCAGGGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</genome_strand>
        <mrna_strand>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTG......................................................................................GCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAG.........................................................................................................................GGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598406" ref_strand="+" ref_description="SGN-U598406 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347523|emb|CAO18160.1| (e_value=4e-51) unnamed; (*ATH) AT5G03260.1 (e_value=2e-49) | Symbol: None | laccase, putative / diphenol oxidase, putative, similar to laccase (Pinus taeda)(GI:13661207) | chr5:777020-779423 REVERSE | Aliases: F15A17.290, F15A17_290; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=2e-48) Laccase-11 OS=Arabidopsis thaliana GN=LAC11; ">
      <seq>cttaggttggctgtaaggggtgcccctgtaaaattgaatggagtaggtggtttgtctgggaaatctggagtgtacacacccttaatgttgaagtaatgagactgaagaagtgcagtttgtggcatgataaaggaaatgttgttcagagatgctgtaagcctagttccatttagacaggtgggacaaggattaattcctaggccaactgtaaacaagaggtgtcgatcaacatttaggggaacgtttgctggatatttgggagtatttaggcttttgagtttaaagttatagctcaaagcaaagtctgagtcattttgtgcaggcaaggtaggaagttttggaatcacggtttctgggattcccttgtactggaaaatagcagtggcagtcttgttatccacactgattggagcatccatgaaggcccttgcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87075" stop="86040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86775" g_stop="86340" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U598406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86775" e_stop="86340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</genome_strand>
        <mrna_strand>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585203" ref_strand="+" ref_description="SGN-U585203 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|157348118|emb|CAO22828.1| (e_value=2e-123) unnamed; (*ATH) AT5G66530.1 (e_value=1e-116)  Symbol: None | aldose 1-epimerase family protein, similar to apospory-associated protein C; APOC (Chlamydomonas reinhardtii) GI:6970044; contains Pfam profile PF01263: Aldose 1-epimerase | chr5:26570973-26572902 REVERSE | Aliases: K1F13.19, K1F13_19... ; (*SWP) sp|Q40784|AAPC_CENCI (e_value=1e-29) Putative apospory-associated protein C OS=Cenchrus ciliaris; ">
      <seq>gattcgaacttattgtagaggcacaatatccagtttaagtagttcagtggacaacaaggactgcacagagcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatccaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87815" stop="92802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88114" g_stop="88331" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="305" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="416" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="468" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="606" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="705" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="803" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="911" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="993" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92166" g_stop="92502" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1330" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-U585203" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88114" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</genome_strand>
        <mrna_strand>GATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594660" ref_strand="+" ref_description="SGN-U594660 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348116|emb|CAO22826.1| (e_value=5e-41) unnamed; (*ATH) AT2G18245.1 (e_value=5e-30) | Symbol: None | expressed protein | chr2:7944369-7946680 FORWARD | Aliases: None; ">
      <seq>gaataacaaagtcgcaaatcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcggttgacgaagataattactgtccttgtcaagaaccagccttcctgtcttcagctatatctttacagtacagctgacaaggtcattcaaatcagtcagttgaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98031" stop="95398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="97283" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97282" i_stop="96978" i_length="305">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="553" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="95971" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="762" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95809" g_stop="95698" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="873" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U594660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="97283"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="95971"/>
          <exon e_start="95809" e_stop="95698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTT</genome_strand>
        <mrna_strand>GAATAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG.................................................................................................................................................................................................................................................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATT-CAAATCAGTCAGTTGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585443" ref_strand="+" ref_description="SGN-U585443 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157348116|emb|CAO22826.1| (e_value=6e-74) unnamed; (*ATH) AT2G18245.1 (e_value=3e-60) | Symbol: None | expressed protein | chr2:7944369-7946680 FORWARD | Aliases: None; ">
      <seq>gcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcgattgaaaaagataattactgtccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98013" stop="95670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97714" g_stop="97073" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="745" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="95971" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="954" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95809" g_stop="95780" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="984" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-U585443" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97714" e_stop="97073"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="95971"/>
          <exon e_start="95809" e_stop="95780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGT</genome_strand>
        <mrna_strand>GCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGATTGAAAAAGATAATTACTGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3425" PGL_stop="1785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3425" e_stop="1785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3425" e_stop="1785" e_length="1641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3425" stop="2584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3170" stop="2400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2411" stop="2225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2260" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCGATGGGTCTAGGATTGGGGTGGTTGTATACCTTTTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACATTCACAACCTTGAGTTGTAACAAAACTCTACTCAAAATTAAGTTATAAACACCTCAAGTTAAGAGCTCTCATCCATTTTAATACAGAAAAAATACACAACATCAAATCAATTGTATTCGCTTCTACATTGGCCATAATCTGCAAAAAAAATGTGTATAACTTGTTACTTCTTGAGGAGCACTGTCATTCTAGGCTTGCACACTTGTACCATTTGCAACCCATTGCAGCCCTTGTGACTTGAGAGCAGAAGTGTCTTACTTTCAGGATAAATGGCAACTTAAAACTGAGCTGCAGAACATGTTAAATGGTGCTAGCATGAAGAAATGGGATCAATGCCACCAATAGCAACCCAAAACATTCAGTTAATCCCAAATCCAACTTCTCATTATCATCTTTTCCTCAACTGAGAGCCTCTTCCAACTGCCTTCATA</gDNA_template>
            <first_frame> N  *  L  I  I  I  *  T  K  K  S  I  L  L  V  L  N  S  L  L  P  S  G  V  L  Q  I  L  W  Q  L  D  H  F  I  F  Y  I  Y  G  N  T  T  L  P  F  I  L  P  K  K  N  K  K  *  K  F  V  V  R  A  R  L  R  R  L  G  R  I  N  P  S  R  T  P  E  S  P  P  P  V  T  *  L  L  Q  L  S  K  S  K  E  T  L  T  R  T  T  S  I  R  S  L  *  F  S  H  K  M  A  M  T  M  T  P  L  R  S  S  K  N  S  N  S  I  S  S  N  P  L  T  Q  T  *  S  S  D  N  F  H  L  K  A  F  L  S  N  S  G  L  P  L  L  F  S  S  L  S  L  I  T  L  V  T  A  N  Q  L  R  F  P  I  C  S  N  V  R  K  K  G  F  R  Y  P  F  V  F  S  N  W  V  Q  E  Q  V  L  L  G  *  L  L  L  L  F  L  V  L  R  L  L  S  L  T  F  L  M  C  C  L  I  Y  S  S  M  L  M  Q  T  H  K  F  W  N  N  R  V  G  V  L  M  L  R  R  L  A  G  G  I  T  S  I  W  R  L  L  V  E  I  M  T  *  F  W  D  L  M  W  C  T  M  I  T  S  M  I  L  *  L  T  R  *  G  S  S  C  *  E  V  E  R  R  *  L  L  L  W  L  I  *  E  D  G  R  R  N  L  L  S  S  R  E  P  R  S  F  L  M  S  K  S  Y  I  P  S  L  R  P  M  G  L  G  L  G  W  L  Y  T  F  S  P  G  K  D  S  H  Y  S  Q  S  R  L  D  V  G  G  M  S  V  *  I  L  L  S  C  H  V  *  Q  W  G  W  G  *  P  N  K  E  V  K  N  Y  C  I  C  F  T  W  K  Y  N  Q  Q  R  K  L  C  I  I  A  F  *  L  N  I  H  N  L  E  L  *  Q  N  S  T  Q  N  *  V  I  N  T  S  S  *  E  L  S  S  I  L  I  Q  K  K  Y  T  T  S  N  Q  L  Y  S  L  L  H  W  P  *  S  A  K  K  M  C  I  T  C  Y  F  L  R  S  T  V  I  L  G  L  H  T  C  T  I  C  N  P  L  Q  P  L  *  L  E  S  R  S  V  L  L  S  G  *  M  A  T  *  N  *  A  A  E  H  V  K  W  C  *  H  E  E  M  G  S  M  P  P  I  A  T  Q  N  I  Q  L  I  P  N  P  T  S  H  Y  H  L  F  L  N  *  E  P  L  P  T  A  F  I </first_frame>
            <second_frame>  I  D  *  *  L  F  K  Q  K  N  Q  S  F  W  F  *  I  R  Y  Y  H  L  A  S  F  K  F  F  G  N  L  T  I  L  Y  S  I  F  M  V  I  L  L  Y  H  L  Y  Y  Q  K  K  I  K  N  K  N  L  L  L  G  Q  D  S  A  D  W  V  G  *  T  P  Q  E  P  R  N  R  R  R  L  S  H  D  F  S  N  C  R  N  Q  R  R  H  *  H  G  R  P  Q  S  V  H  Y  D  S  P  T  R  W  P  *  Q  *  R  L  S  A  A  A  K  T  A  T  P  F  P  P  I  H  *  L  K  R  S  H  Q  T  T  S  I  *  R  P  F  F  P  T  L  A  C  R  Y  Y  S  R  H  S  P  *  *  H  S  *  R  R  I  N  S  V  F  R  F  V  Q  T  S  G  K  R  G  F  A  T  P  S  Y  S  R  T  G  F  R  N  R  C  C  W  D  S  C  C  C  Y  S  W  C  *  G  Y  C  H  *  P  S  S  C  A  A  *  Y  T  V  Q  C  *  C  K  L  T  S  F  G  T  T  E  W  G  C  *  C  C  G  A  *  L  G  G  *  P  A  Y  G  G  C  W  *  R  L  *  P  D  F  G  I  *  C  G  V  P  *  S  P  L  *  S  S  D  *  H  V  E  V  L  P  V  R  R  W  K  E  D  S  F  C  Y  G  S  F  E  K  M  E  E  G  I  C  F  L  Q  E  S  Q  E  A  F  *  C  P  N  H  T  Y  R  A  S  A  R  W  V  *  D  W  G  G  C  I  P  F  H  R  E  K  I  A  T  I  V  N  Q  G  *  M  L  V  G  C  Q  S  E  S  Y  C  H  V  M  Y  N  N  G  D  G  V  S  P  T  K  K  *  K  T  T  V  F  A  L  R  G  N  T  I  N  K  E  S  C  V  L  L  H  F  N  *  T  F  T  T  L  S  C  N  K  T  L  L  K  I  K  L  *  T  P  Q  V  K  S  S  H  P  F  *  Y  R  K  N  T  Q  H  Q  I  N  C  I  R  F  Y  I  G  H  N  L  Q  K  K  C  V  *  L  V  T  S  *  G  A  L  S  F  *  A  C  T  L  V  P  F  A  T  H  C  S  P  C  D  L  R  A  E  V  S  Y  F  Q  D  K  W  Q  L  K  T  E  L  Q  N  M  L  N  G  A  S  M  K  K  W  D  Q  C  H  Q  *  Q  P  K  T  F  S  *  S  Q  I  Q  L  L  I  I  I  F  S  S  T  E  S  L  F  Q  L  P  S   </second_frame>
            <third_frame>   L  I  D  N  Y  L  N  K  K  I  N  P  F  G  F  K  F  V  I  T  I  W  R  P  S  N  S  L  A  T  *  P  F  Y  I  L  Y  L  W  *  Y  Y  F  T  I  Y  I  T  K  K  K  *  K  I  K  I  C  C  *  G  K  T  P  Q  T  G  S  D  K  P  L  K  N  P  G  I  A  A  A  C  H  M  T  S  P  I  V  E  I  K  G  D  I  D  T  D  D  L  N  P  F  T  M  I  L  P  Q  D  G  H  D  N  D  A  S  P  Q  Q  Q  K  Q  Q  L  H  F  L  Q  S  I  N  S  N  V  V  I  R  Q  L  P  S  E  G  L  S  F  Q  L  W  P  A  A  T  I  L  V  T  L  L  D  N  T  R  N  G  E  S  T  P  F  S  D  L  F  K  R  Q  E  K  G  V  S  L  P  L  R  I  L  E  L  G  S  G  T  G  V  V  G  I  A  A  A  A  I  L  G  A  K  V  T  V  T  D  L  P  H  V  L  P  N  I  Q  F  N  V  D  A  N  S  Q  V  L  E  Q  Q  S  G  G  V  D  V  A  A  L  S  W  G  D  N  Q  H  M  E  A  V  G  R  D  Y  D  L  I  L  G  S  D  V  V  Y  H  D  H  L  Y  D  P  L  I  N  T  L  R  F  F  L  L  G  G  G  K  K  I  A  F  V  M  A  H  L  R  R  W  K  K  E  S  A  F  F  K  R  A  K  K  L  F  D  V  Q  I  I  H  T  E  P  P  P  D  G  S  R  I  G  V  V  V  Y  L  F  T  G  K  R  *  P  L  *  S  I  K  A  R  C  W  W  D  V  S  L  N  L  I  V  M  S  C  I  T  M  G  M  G  L  A  Q  Q  R  S  K  K  L  L  Y  L  L  Y  V  E  I  Q  S  T  K  K  V  V  Y  Y  C  I  L  I  E  H  S  Q  P  *  V  V  T  K  L  Y  S  K  L  S  Y  K  H  L  K  L  R  A  L  I  H  F  N  T  E  K  I  H  N  I  K  S  I  V  F  A  S  T  L  A  I  I  C  K  K  N  V  Y  N  L  L  L  L  E  E  H  C  H  S  R  L  A  H  L  Y  H  L  Q  P  I  A  A  L  V  T  *  E  Q  K  C  L  T  F  R  I  N  G  N  L  K  L  S  C  R  T  C  *  M  V  L  A  *  R  N  G  I  N  A  T  N  S  N  P  K  H  S  V  N  P  K  S  N  F  S  L  S  S  F  P  Q  L  R  A  S  S  N  C  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3246" stop="2395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKTPQTGSDKPLKNPGIAAACHMTSPIVEIKGDIDTDDLNPFTMILPQDGHDNDASPQQQKQQLHFLQSINSNVVIRQLPSEGLSFQLWPAATILVTLLDNTRNGESTPFSDLFKRQEKGVSLPLRILELGSGTGVVGIAAAAILGAKVTVTDLPHVLPNIQFNVDANSQVLEQQSGGVDVAALSWGDNQHMEAVGRDYDLILGSDVVYHDHLYDPLINTLRFFLLGGGKKIAFVMAHLRRWKKESAFFKRAKKLFDVQIIHTEPPPDGSRIGVVVYLFTGKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2202" stop="1975"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVTKLYSKLSYKHLKLRALIHFNTEKIHNIKSIVFASTLAIICKKNVYNLLLLEEHCHSRLAHLYHLQPIAALVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28002" PGL_stop="22389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28002" e_stop="27933"/>
            <exon e_start="26898" e_stop="26806"/>
            <exon e_start="26590" e_stop="26544"/>
            <exon e_start="26469" e_stop="26407"/>
            <exon e_start="26321" e_stop="26262"/>
            <exon e_start="26136" e_stop="26077"/>
            <exon e_start="25950" e_stop="25891"/>
            <exon e_start="25454" e_stop="25340"/>
            <exon e_start="25261" e_stop="25133"/>
            <exon e_start="24802" e_stop="24694"/>
            <exon e_start="24455" e_stop="24388"/>
            <exon e_start="24298" e_stop="24209"/>
            <exon e_start="23202" e_stop="22389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.312" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.073" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.663" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28002" e_stop="27933" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27932" i_stop="26899" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26898" e_stop="26806" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.312" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26805" i_stop="26591" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26590" e_stop="26544" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26543" i_stop="26470" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26469" e_stop="26407" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.900">
            <gDNA_intron_boundary i_start="26406" i_stop="26322" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26321" e_stop="26262" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.073">
            <gDNA_intron_boundary i_start="26261" i_stop="26137" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26136" e_stop="26077" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.572" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26076" i_stop="25951" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25950" e_stop="25891" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25890" i_stop="25455" i_length="436"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="25454" e_stop="25340" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.533" acc_prob="0.663">
            <gDNA_intron_boundary i_start="25339" i_stop="25262" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25261" e_stop="25133" e_length="129"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25132" i_stop="24803" i_length="330"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="24802" e_stop="24694" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24693" i_stop="24456" i_length="238"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24455" e_stop="24388" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24387" i_stop="24299" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="24298" e_stop="24209" e_length="90"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24208" i_stop="23203" i_length="1006"/>
          </intron>
          <exon e_serial="13" e_score="0.999">
            <gDNA_exon_boundary e_start="23202" e_stop="22389" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28002" stop="27933"/>
              <exon start="26898" stop="26806"/>
              <exon start="26590" stop="26544"/>
              <exon start="26469" stop="26407"/>
              <exon start="26321" stop="26262"/>
              <exon start="26136" stop="26077"/>
              <exon start="25950" stop="25891"/>
              <exon start="25454" stop="25340"/>
              <exon start="25261" stop="25133"/>
              <exon start="24802" stop="24694"/>
              <exon start="24455" stop="24388"/>
              <exon start="24298" stop="24209"/>
              <exon start="23202" stop="22389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576634" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG : CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG : GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG : GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT : GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG : GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG : GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG : ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAG : GAACATTTGCTATCTATGCACTGGTATCAGCTTTTACGGTGGTTTTTGTGAAGCTTTGGGTTCCAGAAACCAAAGGAAAAACACTGGAAGAAATTCAGCAGTCCTTCAGATGATACAAAATAAAATTGA : GGATGTAAGGAACTGCTTGAGACACTTGTTATAAACGCAAGGTCGTTCTAGGTGAACCAGATGCCCTGCCTTGTCTATGCCATGAAATGTAGTCTTCTCACCCAGTTGA : TGTTTCATGTTCTGAGCAAGCTCCAAATTGAAAATTTGATCATTCTCACCCCAGAGGAGATGTATTCT : CTGTGGAAAATTTGGAATACTTGTGTCTTTGTTGCTCACCACCAACCCTTCTAGCAGCTCTCCTCTTTCCTTTCTGTTGGTGAACATTAC : CTCGAGAAAATCTCTATGAAGACGATCAGGGAACCAAAGCTTCTTGTAAGCAGCCACTTTTAGCAGGGCCTTAAGACCCTTAACAGAGGTAGGCAGCAGCAGCTCCGAAGAAGATGAAAATCCCAAACCATTGAGCGTGGTAGTGCTAATGGAATCAGTCATCGCTAATATCGATCCAGACACCACCAACGCCTCAACTAAATCTGGAAACATTTCCGCCATCTTAAACGCCACCATTCCTCCATAACTAAATCCAACCACTACGCATTTTTCCACGCCTAATTTCCTCAGCCCTTTACCCAAACACTCTGCTTGAAAACCCGGCGATCTATCGGAGCTATCCGTAACTGATCCGCCGAAGAAAAGTAGGTCCGGTACATAAACAGAGTATTTTTTAGTTAATGCACCGATTTGAAATTGCCACGTCACTATTCCTTCGCCGGCAAAGCCGTGGATTAGTACGACCACGGGTTTGTTCGGGTCGGGTTCGGTGGTGGAATCAGGGGAAATAGCATATTGGTTGTTGGAGAGAGGAGTAGTGGTTGTGATTTTTTTGTTTTTCTTCGTTTTTTGAATTATGGTTTCAGAAGGAACCCAAAAATTCATAATTGTGCCTGGTTCTATCTCTATACTATGAGGTCTGATTCCAGCTAATTTCATTAGGCCATGTAACAATGGTTTTTGTGCTTCAACCAAGTTCACCATTTTTTTATTTGCAAGAAAAATGTTTCTTGTGTACGGAGGAATTAAGGATAGAAGAGATGAGAGGAAGGGGATTTTTAAAGTAAGGTTAGGTGTTGAGTTGTTATCCGTT</gDNA_template>
            <first_frame> L  A  L  Q  Q  L  S  G  V  N  G  V  L  F  Y  S  S  N  I  F  K  S  A   : A  R  G  D  E  L  E  N  *  T  T  K  S  R  D  H  I  *  Y  Q  D  E  V  F  V  V  D  S  S  K  I   : G  I  S  S  S  K  A  A  T  F  G  I  G  A  I  Q  :  V  I  V  T  G  I  S  A  S  L  V  D  K  A  G  R  R  L  L  L  I  :  V  S  S  S  V  M  T  A  S  S  L  L  V  A  M  S  F  F  L  K  :  E  F  T  S  E  N  W  H  S  F  F  A  V  L  S  L  V  G  L  V  :  A  L  V  M  A  F  G  V  G  L  G  S  I  P  W  I  I  M  S  E  :  I  L  P  V  S  I  K  S  L  G  G  S  V  A  T  L  A  N  W  F  S  A  W  I  V  T  M  T  A  N  L  L  L  T  W  S  K  G   : G  T  F  A  I  Y  A  L  V  S  A  F  T  V  V  F  V  K  L  W  V  P  E  T  K  G  K  T  L  E  E  I  Q  Q  S  F  R  *  Y  K  I  K  L   : R  M  *  G  T  A  *  D  T  C  Y  K  R  K  V  V  L  G  E  P  D  A  L  P  C  L  C  H  E  M  *  S  S  H  P  V  D :   V  S  C  S  E  Q  A  P  N  *  K  F  D  H  S  H  P  R  G  D  V  F   : S  V  E  N  L  E  Y  L  C  L  C  C  S  P  P  T  L  L  A  A  L  L  F  P  F  C  W  *  T  L   : P  R  E  N  L  Y  E  D  D  Q  G  T  K  A  S  C  K  Q  P  L  L  A  G  P  *  D  P  *  Q  R  *  A  A  A  A  P  K  K  M  K  I  P  N  H  *  A  W  *  C  *  W  N  Q  S  S  L  I  S  I  Q  T  P  P  T  P  Q  L  N  L  E  T  F  P  P  S  *  T  P  P  F  L  H  N  *  I  Q  P  L  R  I  F  P  R  L  I  S  S  A  L  Y  P  N  T  L  L  E  N  P  A  I  Y  R  S  Y  P  *  L  I  R  R  R  K  V  G  P  V  H  K  Q  S  I  F  *  L  M  H  R  F  E  I  A  T  S  L  F  L  R  R  Q  S  R  G  L  V  R  P  R  V  C  S  G  R  V  R  W  W  N  Q  G  K  *  H  I  G  C  W  R  E  E  *  W  L  *  F  F  C  F  S  S  F  F  E  L  W  F  Q  K  E  P  K  N  S  *  L  C  L  V  L  S  L  Y  Y  E  V  *  F  Q  L  I  S  L  G  H  V  T  M  V  F  V  L  Q  P  S  S  P  F  F  Y  L  Q  E  K  C  F  L  C  T  E  E  L  R  I  E  E  M  R  G  R  G  F  L  K  *  G  *  V  L  S  C  Y  P   </first_frame>
            <second_frame>  S  H  S  S  N  S  V  E  L  M  V  F  Y  S  I  P  V  T  S  S  N  Q  L  :  Q  E  V  M  N  W  R  I  R  Q  Q  K  V  G  T  T  S  D  I  R  M  K  F  L  *  *  I  Q  V  K  *  :  E  Y  H  P  V  K  Q  Q  H  L  V  L  G  L  F  R :   S  S  S  L  V  S  L  H  H  W  W  T  R  R  D  A  G  Y  S  S  L :   Y  P  H  L  *  *  L  L  A  A  C  L  L  Q  C  H  S  S  *  R :   S  S  P  L  K  I  G  I  H  S  L  Q  Y  C  L  W  L  D  L  W :   P  W  *  W  H  L  V  L  D  W  D  P  Y  L  G  S  *  C  L  R :   F  C  L  *  A  S  K  V  W  V  A  V  L  Q  L  W  P  I  G  F  Q  H  G  L  L  Q  *  Q  Q  I  C  F  *  L  G  V  K  E  :  E  H  L  L  S  M  H  W  Y  Q  L  L  R  W  F  L  *  S  F  G  F  Q  K  P  K  E  K  H  W  K  K  F  S  S  P  S  D  D  T  K  *  N  *  :  G  C  K  E  L  L  E  T  L  V  I  N  A  R  S  F  *  V  N  Q  M  P  C  L  V  Y  A  M  K  C  S  L  L  T  Q  L   : M  F  H  V  L  S  K  L  Q  I  E  N  L  I  I  L  T  P  E  E  M  Y  S  :  L  W  K  I  W  N  T  C  V  F  V  A  H  H  Q  P  F  *  Q  L  S  S  F  L  S  V  G  E  H  Y  :  L  E  K  I  S  M  K  T  I  R  E  P  K  L  L  V  S  S  H  F  *  Q  G  L  K  T  L  N  R  G  R  Q  Q  Q  L  R  R  R  *  K  S  Q  T  I  E  R  G  S  A  N  G  I  S  H  R  *  Y  R  S  R  H  H  Q  R  L  N  *  I  W  K  H  F  R  H  L  K  R  H  H  S  S  I  T  K  S  N  H  Y  A  F  F  H  A  *  F  P  Q  P  F  T  Q  T  L  C  L  K  T  R  R  S  I  G  A  I  R  N  *  S  A  E  E  K  *  V  R  Y  I  N  R  V  F  F  S  *  C  T  D  L  K  L  P  R  H  Y  S  F  A  G  K  A  V  D  *  Y  D  H  G  F  V  R  V  G  F  G  G  G  I  R  G  N  S  I  L  V  V  G  E  R  S  S  G  C  D  F  F  V  F  L  R  F  L  N  Y  G  F  R  R  N  P  K  I  H  N  C  A  W  F  Y  L  Y  T  M  R  S  D  S  S  *  F  H  *  A  M  *  Q  W  F  L  C  F  N  Q  V  H  H  F  F  I  C  K  K  N  V  S  C  V  R  R  N  *  G  *  K  R  *  E  E  G  D  F  *  S  K  V  R  C  *  V  V  I  R  </second_frame>
            <third_frame>   R  T  P  A  T  Q  W  S  *  W  C  F  I  L  F  Q  *  H  L  Q  I  S  C :   K  R  *  *  T  G  E  L  D  N  K  K  S  G  P  H  L  I  S  G  *  S  F  C  S  R  F  K  *  N  R :   N  I  I  Q  *  S  S  N  I  W  Y  W  G  Y  S   : G  H  R  H  W  Y  L  C  I  T  G  G  Q  G  G  T  Q  A  T  P  H   : C  I  L  I  C  N  D  C  *  Q  L  A  C  C  N  V  I  L  P  E   : G  V  H  L  *  K  L  A  F  I  L  C  S  I  V  S  G  W  T  C   : G  L  G  D  G  I  W  C  W  I  G  I  H  T  L  D  H  N  V  *   : D  S  A  C  K  H  Q  K  S  G  W  Q  C  C  N  F  G  Q  L  V  F  S  M  D  C  Y  N  D  S  K  F  A  F  N  L  E  *  R  R :   N  I  C  Y  L  C  T  G  I  S  F  Y  G  G  F  C  E  A  L  G  S  R  N  Q  R  K  N  T  G  R  N  S  A  V  L  Q  M  I  Q  N  K  I  E :   D  V  R  N  C  L  R  H  L  L  *  T  Q  G  R  S  R  *  T  R  C  P  A  L  S  M  P  *  N  V  V  F  S  P  S  *  :  C  F  M  F  *  A  S  S  K  L  K  I  *  S  F  S  P  Q  R  R  C  I  L :   C  G  K  F  G  I  L  V  S  L  L  L  T  T  N  P  S  S  S  S  P  L  S  F  L  L  V  N  I  T :   S  R  K  S  L  *  R  R  S  G  N  Q  S  F  L  *  A  A  T  F  S  R  A  L  R  P  L  T  E  V  G  S  S  S  S  E  E  D  E  N  P  K  P  L  S  V  V  V  L  M  E  S  V  I  A  N  I  D  P  D  T  T  N  A  S  T  K  S  G  N  I  S  A  I  L  N  A  T  I  P  P  *  L  N  P  T  T  T  H  F  S  T  P  N  F  L  S  P  L  P  K  H  S  A  *  K  P  G  D  L  S  E  L  S  V  T  D  P  P  K  K  S  R  S  G  T  *  T  E  Y  F  L  V  N  A  P  I  *  N  C  H  V  T  I  P  S  P  A  K  P  W  I  S  T  T  T  G  L  F  G  S  G  S  V  V  E  S  G  E  I  A  Y  W  L  L  E  R  G  V  V  V  V  I  F  L  F  F  F  V  F  *  I  M  V  S  E  G  T  Q  K  F  I  I  V  P  G  S  I  S  I  L  *  G  L  I  P  A  N  F  I  R  P  C  N  N  G  F  C  A  S  T  K  F  T  I  F  L  F  A  R  K  M  F  L  V  Y  G  G  I  K  D  R  R  D  E  R  K  G  I  F  K  V  R  L  G  V  E  L  L  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26845" stop="26806"/>
                    <exon start="26590" stop="26544"/>
                    <exon start="26469" stop="26407"/>
                    <exon start="26321" stop="26262"/>
                    <exon start="26136" stop="26077"/>
                    <exon start="25950" stop="25891"/>
                    <exon start="25454" stop="25340"/>
                    <exon start="25261" stop="25149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQDEVFVVDSSKIGISSSKAATFGIGAIQVIVTGISASLVDKAGRRLLLIVSSSVMTASSLLVAMSFFLKEFTSENWHSFFAVLSLVGLVALVMAFGVGLGSIPWIIMSEILPVSIKSLGGSVATLANWFSAWIVTMTANLLLTWSKGGTFAIYALVSAFTVVFVKLWVPETKGKTLEEIQQSFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23153" stop="22956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AATFSRALRPLTEVGSSSSEEDENPKPLSVVVLMESVIANIDPDTTNASTKSGNISAILNATIPP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22743" stop="22549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDHGFVRVGFGGGIRGNSILVVGERSSGCDFFVFLRFLNYGFRRNPKIHNCAWFYLYTMRSDSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30756" PGL_stop="28177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30756" e_stop="30522"/>
            <exon e_start="30439" e_stop="30377"/>
            <exon e_start="29876" e_stop="29787"/>
            <exon e_start="29529" e_stop="29470"/>
            <exon e_start="29371" e_stop="29306"/>
            <exon e_start="29214" e_stop="29149"/>
            <exon e_start="29025" e_stop="28950"/>
            <exon e_start="28592" e_stop="28528"/>
            <exon e_start="28448" e_stop="28356"/>
            <exon e_start="28222" e_stop="28177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="0.984"/>
          <exon-intron don_prob="0.549" acc_prob="0.159" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.351" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.916" e_score="0.989"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="30756" e_stop="30522" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="30439" e_stop="30377" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="29876" e_stop="29787" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.549" acc_prob="0.159">
            <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29529" e_stop="29470" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.881">
            <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29306" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29305" i_stop="29215" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29214" e_stop="29149" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.328" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29148" i_stop="29026" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29025" e_stop="28950" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.980">
            <gDNA_intron_boundary i_start="28949" i_stop="28593" i_length="357"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28592" e_stop="28528" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.351" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28527" i_stop="28449" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="28448" e_stop="28356" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28355" i_stop="28223" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="0.957">
            <gDNA_exon_boundary e_start="28222" e_stop="28177" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="30522"/>
              <exon start="30439" stop="30377"/>
              <exon start="29876" stop="29787"/>
              <exon start="29529" stop="29470"/>
              <exon start="29371" stop="29306"/>
              <exon start="29214" stop="29149"/>
              <exon start="29025" stop="28950"/>
              <exon start="28592" stop="28528"/>
              <exon start="28448" stop="28356"/>
              <exon start="28222" stop="28177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACT : TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAG : TTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG : ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT : GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG : GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG : CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG : GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG : GCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCTACGGGGATTTGACACAGATATATCCTCAGAAGTGAATGAGATCAAG : AAATCTGTGAGATCATCAACTAAAAAAGCTACCATTCGGTTTTCTG</gDNA_template>
            <first_frame> F  F  H  L  Y  P  K  R  K  Q  K  T  R  N  N  D  E  F  P  R  *  *  H  R  G  R  A  S  E  A  L  A  A  Y  R  *  L  V  P  D  E  L  P  P  V  Q  Y  D  G  I  L  S  P  N  P  P  R  I  Y  L  H  L  S  L  C  S  H  C  C  I  R  P  N  S  I  W  I  H   : L  W  L  L  *  P  Y  P  I  R  N  H  Q  R  P  *  T  Y  H  F  R   : V  L  N  L  W  I  F  S  K  C  W  C  N  D  W  R  N  C  K  R  S  N  I  R  I  H  W  T  K  R   : D  S  N  D  C  I  N  S  *  Y  Y  W  M  A  C  R  F  I  C  H   : *  C  L  I  F  I  Y  G  K  A  V  G  R  F  W  C  R  H  Y  F  L  C   : G  A  C  I  Y  S  R  D  F  T  *  K  H  E  G  S  S  W  I  H  *  P   : A  L  C  N  S  G  D  Y  A  G  I  S  V  G  I  I  C  K  L  E  S  A  C  C  Y  R :   N  V  T  M  H  G  F  D  T  W  S  I  F  Y  T  *  I  S  S  L  V   : G  *  K  W  A  E  *  R  F  *  N  F  F  A  S  S  T  G  I  *  H  R  Y  I  L  R  S  E  *  D  Q   : E  I  C  E  I  I  N  *  K  S  Y  H  S  V  F   </first_frame>
            <second_frame>  F  F  T  F  I  L  N  G  N  R  R  H  G  T  T  M  S  F  R  D  D  N  T  E  D  G  L  R  K  P  L  L  H  T  G  S  W  Y  R  M  S  S  R  Q  S  S  M  M  G  S  S  A  Q  I  L  R  E  S  I  S  I  Y  L  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  S  N  P  T  Q  S  E  I  T  R  D  L  R  L  T  I  S  E  :  F  S  I  F  G  S  L  A  N  V  G  A  M  I  G  A  I  A  S  G  Q  I  S  E  Y  I  G  R  K  G  :  T  L  M  I  A  S  I  P  N  I  I  G  W  L  A  V  S  F  A  T  :  D  V  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  S  P  K  N  M  R  G  V  L  G  S  I  N  Q  :  L  S  V  T  V  G  I  M  L  V  Y  L  L  G  L  F  V  S  W  R  V  L  A  V  I   : G  M  L  P  C  M  V  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  N  G  L  N  E  D  F  E  T  S  L  Q  V  L  R  G  F  D  T  D  I  S  S  E  V  N  E  I  K  :  K  S  V  R  S  S  T  K  K  A  T  I  R  F  S  </second_frame>
            <third_frame>   F  S  P  L  S  *  T  E  T  E  D  T  E  Q  R  *  V  S  E  M  I  T  Q  R  T  G  F  G  S  P  C  C  I  P  V  A  G  T  G  *  A  P  A  S  P  V  *  W  D  P  Q  P  K  S  S  A  N  L  S  P  F  I  F  V  F  S  L  L  H  *  A  Q  F  N  L  D  S  L :   V  A  T  L  T  L  P  N  P  K  S  P  E  T  L  D  L  P  F  Q  S :   S  Q  S  L  D  L  *  Q  M  L  V  Q  *  L  A  Q  L  Q  A  V  K  Y  Q  N  T  L  D  E  K  G :   L  *  *  L  H  Q  F  L  I  L  L  D  G  L  P  F  H  L  P  L :   M  S  H  F  Y  I  W  E  G  C  W  K  V  L  V  S  A  L  F  P  M  W :   C  L  Y  I  *  Q  R  F  H  L  K  T  *  G  E  F  L  D  P  L  T  S :   S  L  *  Q  W  G  L  C  W  Y  I  C  W  D  Y  L  *  A  G  E  C  L  L  L  *  :  E  C  Y  H  A  W  F  *  Y  L  V  Y  F  L  Y  L  N  L  L  V  G  W :   L  K  M  G  *  M  K  I  L  K  L  L  C  K  F  Y  G  D  L  T  Q  I  Y  P  Q  K  *  M  R  S  R :   N  L  *  D  H  Q  L  K  K  L  P  F  G  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30755" stop="30522"/>
                    <exon start="30439" stop="30377"/>
                    <exon start="29876" stop="29787"/>
                    <exon start="29529" stop="29470"/>
                    <exon start="29371" stop="29306"/>
                    <exon start="29214" stop="29149"/>
                    <exon start="29025" stop="28950"/>
                    <exon start="28592" stop="28528"/>
                    <exon start="28448" stop="28356"/>
                    <exon start="28222" stop="28178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTFILNGNRRHGTTMSFRDDNTEDGLRKPLLHTGSWYRMSSRQSSMMGSSAQILRESISIYLCVLIVALGPIQFGFTCGYSNPTQSEITRDLRLTISEFSIFGSLANVGAMIGAIASGQISEYIGRKGTLMIASIPNIIGWLAVSFATDVSFLYMGRLLEGFGVGIISYVVPVYIAEISPKNMRGVLGSINQLSVTVGIMLVYLLGLFVSWRVLAVIGMLPCMVLIPGLFFIPESPRWLAKNGLNEDFETSLQVLRGFDTDISSEVNEIKKSVRSSTKKATIRFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41548" PGL_stop="42653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41548" e_stop="42653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41548" e_stop="42653" e_length="1106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41548" stop="42653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAGATAGATAGCAAAATTAGGATTTATGGAACACAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</gDNA_template>
            <first_frame> F  Q  I  D  S  K  I  R  I  Y  G  T  Q  R  P  R  K  G  Y  G  L  A  *  S  Q  S  H  E  L  *  P  I  S  T  *  P  A  R  I  I  F  L  C  S  K  Q  V  P  Y  R  T  K  *  N  N  K  *  T  *  E  Y  H  F  *  P  *  P  N  P  R  S  A  *  Y  Y  S  K  F  R  S  R  S  S  S  T  T  I  Y  *  F  S  K  *  E  E  Y  Y  P  R  P  V  Q  R  M  S  Q  K  S  C  C  K  F  G  R  I  C  T  R  R  L  R  R  I  H  A  K  R  R  R  G  D  T  R  I  P  E  M  C  S  L  *  L  S  P  Q  F  S  *  E  R  D  *  G  R  I  T  N  T  W  C  A  *  K  *  P  P  Y  T  Q  P  N  S  A  F  S  S  S  C  A  Y  A  A  T  T  P  S  *  I  P  S  Q  L  S  K  R  S  H  G  T  S  N  D  E  F  R  R  E  H  G  S  C  S  *  I  I  K  *  R  S  E  Y  V  S  R  R  T  R  G  N  S  A  L  *  F  F  G  I  E  E  E  I  S  N  E  I  Q  S  T  T  E  R  *  N  A  R  V  R  *  E  T  G  M  E  N  S  E  T  R  *  T  R  S  A  S  I  L  *  *  S  G  R  E  E  T  S  V  Q  S  V  D  A  Q  Q  Q  T  S  N  Q  E  E  T  K  L  N  R  Q  D  Y  K  I  P  I  *  I  N  *  L  E  T  L  F  F  F  V  H  K  S  D  S  L  L  L  D  K  *  *  *  L  L  F  F  D  H  K  I  *  T  L  C  G  K  Y  S  L  V  A  P  I  N  S  I  T  K  V  S  L  N  S   </first_frame>
            <second_frame>  F  R  *  I  A  K  L  G  F  M  E  H  R  G  Q  E  K  D  M  G  L  P  N  P  N  P  M  S  Y  N  P  S  Q  L  N  Q  Q  E  S  S  S  S  A  A  N  K  F  L  T  A  P  N  R  T  T  N  E  H  E  N  T  I  F  S  P  N  Q  T  L  D  Q  H  N  I  T  Q  N  S  D  P  D  P  V  R  Q  L  S  T  S  S  A  S  E  R  N  I  T  P  V  R  Y  K  E  C  L  K  N  H  A  A  N  L  G  G  Y  V  L  D  G  C  G  E  F  M  P  S  G  E  E  E  T  L  E  Y  L  K  C  A  A  C  D  C  H  R  N  F  H  R  K  E  T  E  D  E  S  Q  T  P  G  V  H  R  N  N  H  R  I  P  N  Q  T  P  P  S  L  P  A  V  P  T  Q  Q  Q  H  H  H  K  Y  P  H  S  Y  P  R  G  H  M  A  P  V  M  M  S  F  G  G  N  T  G  V  A  A  E  S  S  S  E  D  L  N  M  F  H  G  G  Q  G  V  I  Q  P  C  N  F  S  A  S  K  K  R  F  R  T  K  F  S  Q  Q  Q  K  D  R  M  L  E  F  A  E  K  L  G  W  R  I  Q  K  Q  D  E  Q  E  V  H  Q  F  C  N  E  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  S  K  Q  A  T  K  K  K  Q  N  *  T  G  K  T  T  K  S  Q  F  R  *  I  N  *  R  H  S  F  F  L  C  I  N  L  I  V  Y  Y  *  T  N  S  S  N  Y  Y  S  L  I  T  K  F  K  P  Y  V  V  S  T  H  *  *  H  Q  L  I  L  S  Q  K  S  L  *  I  P  </second_frame>
            <third_frame>   S  D  R  *  Q  N  *  D  L  W  N  T  E  A  K  K  R  I  W  A  C  L  I  P  I  P  *  V  I  T  H  L  N  L  T  S  K  N  H  L  P  L  Q  Q  T  S  S  L  P  H  Q  I  E  Q  Q  M  N  M  R  I  P  F  L  A  L  T  K  P  *  I  S  I  I  L  L  K  I  Q  I  Q  I  Q  F  D  N  Y  L  L  V  Q  Q  V  R  G  I  L  P  P  S  G  T  K  N  V  S  K  I  M  L  Q  I  W  E  D  M  Y  *  T  V  A  E  N  S  C  Q  A  E  K  R  R  H  *  N  T  *  N  V  Q  L  V  I  V  T  A  I  F  I  G  K  R  L  R  T  N  H  K  H  L  V  C  I  E  I  T  T  V  Y  P  T  K  L  R  L  L  F  Q  L  C  L  R  S  N  N  T  I  I  N  T  L  T  A  I  Q  E  V  T  W  H  Q  *  *  *  V  S  A  G  T  R  E  L  Q  L  N  H  Q  V  K  I  *  I  C  F  T  E  D  K  G  *  F  S  L  V  I  F  R  H  R  R  R  D  F  E  R  N  S  V  N  N  R  K  I  E  C  *  S  S  L  R  N  W  D  G  E  F  R  N  K  M  N  K  K  C  I  N  F  V  M  K  W  A  *  R  D  K  C  S  K  C  G  C  T  T  A  N  K  Q  P  R  R  N  K  I  K  Q  A  R  L  Q  N  P  N  L  D  K  L  I  R  D  T  L  F  F  C  A  *  I  *  *  F  I  I  R  Q  I  V  V  I  T  I  L  *  S  Q  N  L  N  L  M  W  *  V  L  T  S  S  T  N  *  F  Y  H  K  S  L  F  K  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41558" stop="42457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAKLGFMEHRGQEKDMGLPNPNPMSYNPSQLNQQESSSSAANKFLTAPNRTTNEHENTIFSPNQTLDQHNITQNSDPDPVRQLSTSSASERNITPVRYKECLKNHAANLGGYVLDGCGEFMPSGEEETLEYLKCAACDCHRNFHRKETEDESQTPGVHRNNHRIPNQTPPSLPAVPTQQQHHHKYPHSYPRGHMAPVMMSFGGNTGVAAESSSEDLNMFHGGQGVIQPCNFSASKKRFRTKFSQQQKDRMLEFAEKLGWRIQKQDEQEVHQFCNEVGVKRQVFKVWMHNSKQATKKKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47042" PGL_stop="44201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47042" e_stop="46971"/>
            <exon e_start="45325" e_stop="45228"/>
            <exon e_start="44947" e_stop="44201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="47042" e_stop="46971" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46970" i_stop="45326" i_length="1645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45325" e_stop="45228" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="45227" i_stop="44948" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="44947" e_stop="44201" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47042" stop="46971"/>
              <exon start="45325" stop="45228"/>
              <exon start="44947" stop="44201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAATAACAAAGCACAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCA : GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG : AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGACGAGGCTTCCAATAAAGCATCGGATGCGTATGAGTACGCCTCTAGTAAAGCCGATCAAACCATAAGAATGGCTACCG</gDNA_template>
            <first_frame> D  K  *  Q  S  T  T  V  *  A  K  *  F  L  D  *  L  G  L  F  Q  I  V  A  :  A  P  R  R  C  E  R  *  S  P  K  I  S  G  *  S  K  G  N  C  I  K  C  K  R  F  C  *  F  C  C  T  * :   N  P  K  V  W  F  S  K  G  *  G  D  G  *  C  S  I  *  Q  I  W  *  C  *  K  L  C  V  Q  E  S  Q  S  S  Y  G  C  S  S  R  Y  R  *  S  C  Q  R  K  R  K  R  K  C  V  *  C  L  C  L  C  I  G  E  N  R  P  S  H  K  N  S  C  R  V  C  Q  G  K  G  S  W  C  L  C  L  C  I  *  *  G  R  S  S  Q  E  H  C  F  R  Y  G  R  Q  C  *  R  K  C  Q  K  *  G  S  *  C  Y  *  F  C  Q  R  E  G  T  *  C  L  C  L  C  F  *  Q  G  K  S  S  H  *  H  C  F  *  H  G  R  *  C  Q  R  K  R  Q  T  *  S  L  Q  C  Q  R  C  R  L  *  E  G  A  *  F  H  E  C  C  F  R  N  G  *  F  S  *  E  *  S  I  G  C  L  W  F  C  F  *  *  S  K  *  C  E  R  N  W  E  R  Q  S  V  *  C  L  W  I  C  I  *  K  D  E  P  S  K  G  R  G  F  Q  *  S  I  G  C  V  *  V  R  L  *  *  S  R  S  N  H  K  N  G  Y   </first_frame>
            <second_frame>  I  N  N  K  A  Q  Q  S  K  Q  S  D  S  W  T  D  W  V  S  S  K  L  S  Q :   H  Q  D  D  A  K  D  E  A  Q  R  L  A  D  R  A  K  G  T  A  S  N  A  R  D  S  V  N  S  A  A  H   : E  T  Q  R  Y  G  S  Q  K  A  K  E  M  A  D  V  A  S  D  K  F  G  D  A  K  N  Y  A  S  K  K  A  N  Q  A  M  D  A  A  A  D  T  A  S  H  A  K  E  R  G  K  E  N  A  Y  D  A  Y  A  Y  A  S  E  K  T  G  Q  A  T  K  T  A  A  E  F  A  K  E  K  A  H  G  A  Y  A  Y  A  S  D  K  A  G  Q  A  K  N  I  A  S  D  T  A  A  N  A  K  E  S  A  K  N  K  A  H  D  A  T  D  F  A  K  E  K  A  H  D  A  Y  A  Y  A  S  D  K  A  S  Q  A  T  N  I  A  S  D  M  A  A  D  A  K  E  S  V  K  H  K  A  Y  N  A  K  D  V  A  S  E  K  A  H  D  S  M  N  A  A  S  G  M  G  S  S  A  R  N  K  A  S  D  A  Y  G  F  A  S  D  K  A  S  D  A  K  E  I  G  K  D  K  A  Y  D  A  Y  G  F  V  S  E  K  M  N  R  A  R  D  E  A  S  N  K  A  S  D  A  Y  E  Y  A  S  S  K  A  D  Q  T  I  R  M  A  T  </second_frame>
            <third_frame>   *  I  T  K  H  N  S  L  S  K  V  I  L  G  L  I  G  S  L  P  N  C  R   : S  T  K  T  M  R  K  M  K  P  K  D  *  R  I  E  Q  R  E  L  H  Q  M  Q  E  I  L  L  I  L  L  H  M  :  K  P  K  G  M  V  L  K  R  L  R  R  W  L  M  *  H  L  T  N  L  V  M  L  K  I  M  R  P  R  K  P  I  K  L  W  M  Q  Q  Q  I  P  L  V  M  P  K  K  E  E  K  K  M  R  M  M  L  M  P  M  H  R  R  K  P  A  K  P  Q  K  Q  L  P  S  L  P  R  K  R  L  M  V  L  M  P  M  H  L  I  R  Q  V  K  P  R  T  L  L  Q  I  R  P  P  M  L  K  K  V  P  K  I  R  L  M  M  L  L  I  L  P  K  R  R  H  M  M  L  M  L  M  L  L  T  R  Q  V  K  P  L  T  L  L  L  T  W  P  L  M  P  K  K  A  S  N  I  K  L  T  M  P  K  M  S  P  L  R  R  R  M  I  P  *  M  L  L  P  E  W  V  V  Q  L  G  I  K  H  R  M  L  M  V  L  L  L  I  K  Q  V  M  R  K  K  L  G  K  T  K  R  M  M  L  M  D  L  Y  L  K  R  *  T  E  Q  G  T  R  L  P  I  K  H  R  M  R  M  S  T  P  L  V  K  P  I  K  P  *  E  W  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47041" stop="46971"/>
                    <exon start="45325" stop="45228"/>
                    <exon start="44947" stop="44202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INNKAQQSKQSDSWTDWVSSKLSQHQDDAKDEAQRLADRAKGTASNARDSVNSAAHETQRYGSQKAKEMADVASDKFGDAKNYASKKANQAMDAAADTASHAKERGKENAYDAYAYASEKTGQATKTAAEFAKEKAHGAYAYASDKAGQAKNIASDTAANAKESAKNKAHDATDFAKEKAHDAYAYASDKASQATNIASDMAADAKESVKHKAYNAKDVASEKAHDSMNAASGMGSSARNKASDAYGFASDKASDAKEIGKDKAYDAYGFVSEKMNRARDEASNKASDAYEYASSKADQTIRMAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="66438" PGL_stop="66856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66438" e_stop="66856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="66438" e_stop="66856" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66438" stop="66856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGGATCTCTGCAGCATGAAGACTCTCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGAGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTATGATCCCGTTGTCATTGCTTCTGGACAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</gDNA_template>
            <first_frame> T  S  P  K  D  L  L  I  E  K  R  S  I  K  K  Q  L  E  K  I  G  E  G  D  P  P  K  R  K  I  L  L  F  F  L  S  L  L  N  K  N  G  K  S  I  V  A  E  H  T  E  N  G  S  L  Q  H  E  D  S  L  E  F  E  V  E  S  R  L  K  C  N  Y  N  D  A  Q  R  D  I  F  N  G  S  R  L  P  D  E  F  K  C  P  L  S  S  R  L  M  Y  D  P  V  V  I  A  S  G  Q  T  Y  E  R  F  W  I  E  K  W  F  A  Q  G  N  D  T  C  P  K  T  K  R  K  L  V  H  L  S  S   </first_frame>
            <second_frame>  H  L  Q  K  I  F  *  *  R  K  D  P  S  K  N  S  W  R  K  L  G  R  V  I  H  Q  K  G  K  S  Y  C  S  F  *  V  F  S  T  K  M  A  N  L  L  W  Q  S  T  Q  R  M  D  L  C  S  M  K  T  L  L  N  L  K  W  N  L  V  *  N  V  I  I  M  M  L  K  E  I  S  S  T  A  L  D  F  R  M  S  S  N  V  L  Y  H  Q  D  *  C  M  I  P  L  S  L  L  L  D  K  H  M  K  D  F  G  L  K  N  G  L  L  K  V  M  I  H  V  Q  K  P  K  G  N  W  F  I  C  L  Q  </second_frame>
            <third_frame>   I  S  K  R  S  F  D  R  E  K  I  H  Q  K  T  A  G  E  N  W  G  G  *  S  T  K  K  E  N  L  T  V  L  S  E  S  S  Q  Q  K  W  Q  I  Y  C  G  R  A  H  R  E  W  I  S  A  A  *  R  L  S  *  I  *  S  G  I  S  S  E  M  *  L  *  *  C  S  K  R  Y  L  Q  R  L  S  T  S  G  *  V  Q  M  S  F  I  I  K  T  N  V  *  S  R  C  H  C  F  W  T  N  I  *  K  I  L  D  *  K  M  V  C  S  R  *  *  Y  M  S  K  N  Q  K  E  I  G  S  F  V  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66438" stop="66854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPKDLLIEKRSIKKQLEKIGEGDPPKRKILLFFLSLLNKNGKSIVAEHTENGSLQHEDSLEFEVESRLKCNYNDAQRDIFNGSRLPDEFKCPLSSRLMYDPVVIASGQTYERFWIEKWFAQGNDTCPKTKRKLVHLSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="67822" PGL_stop="68729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67822" e_stop="68729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67822" e_stop="68729" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67822" stop="68729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTG</gDNA_template>
            <first_frame> F  *  R  S  Y  C  Y  N  R  S  V  V  P  P  P  K  L  S  P  *  N  Y  H  V  W  C  T  T  Y  S  P  G  D  S  *  C  P  Q  *  R  I  A  G  I  S  H  Q  N  I  M  *  H  V  R  K  *  Q  N  W  F  L  D  C  T  F  R  V  G  P  K  I  G  S  F  S  *  R  Y  S  T  R  K  K  L  C  Y  H  F  A  *  F  V  Q  Q  R  R  C  *  N  C  Y  S  *  N  *  W  M  H  C  S  S  C  E  T  A  *  A  *  E  S  Q  G  P  G  T  C  C  G  F  S  S  F  F  M  P  S  T  G  S  I  L  S  T  G  N  G  *  R  C  H  P  *  T  R  L  C  I  Y  *  W  K  Q  Q  S  K  G  N  G  F  G  V  A  E  T  A  E  G  G  I  *  *  Y  C  R  I  L  R  T  G  N  R  H  S  *  T  P  Y  L  *  L  Y  S  T  E  I  S  F  R  R  N  R  N  F  W  E  I  F  L  K  T  *  F  D  Y  C  Q  K  D  K  *  K  V  M  R  F  E  D  F  C  M  I  G  C  V  *  F  H  R  L  I  *  F  L  L  G  R  G  I  D  S  K  H  L  Y  C  Y  S  C  L  R  V  G  I  E  G  V  I  I  V  V  V  S  S  F  C  L  Y  L  I  D  F  T  G  Q  H  I  Q  V  Y  S  V  F   </first_frame>
            <second_frame>  S  K  E  A  I  A  I  I  E  V  L  S  R  H  Q  N  C  H  H  K  I  T  M  S  G  A  L  P  I  L  L  E  I  L  D  A  H  S  R  E  L  Q  E  S  A  I  K  I  L  C  N  M  S  G  S  S  K  I  G  S  L  I  A  P  S  E  L  V  P  K  L  V  P  F  L  E  D  T  A  L  A  R  N  C  V  I  I  L  H  S  L  C  N  K  E  D  A  R  I  A  I  A  E  T  D  G  C  I  A  A  V  V  K  L  L  E  R  E  S  R  K  D  Q  E  H  A  V  D  F  L  L  S  L  C  L  Q  R  V  Q  Y  C  Q  L  V  M  D  E  G  V  I  P  E  L  V  S  V  S  I  N  G  N  N  K  A  K  A  M  A  L  E  L  L  R  L  L  K  G  E  F  S  D  T  V  E  S  Y  E  P  E  I  D  I  P  K  P  P  T  S  D  F  T  Q  Q  K  S  H  S  E  G  T  G  I  F  G  K  F  F  S  K  R  S  S  T  T  A  K  R  I  N  R  K  *  C  G  L  K  I  F  V  *  *  D  V  Y  N  F  T  G  *  S  S  F  C  *  G  E  A  *  T  V  S  I  Y  I  V  I  A  A  *  E  L  G  *  K  V  *  L  L  L  L  Y  L  V  F  V  C  I  *  L  I  S  L  D  N  I  F  R  C  I  V  Y  F  </second_frame>
            <third_frame>   L  K  K  L  L  L  *  S  K  C  C  P  A  T  K  T  V  T  I  K  L  P  C  L  V  H  Y  L  F  S  W  R  F  L  M  P  T  V  E  N  C  R  N  Q  P  S  K  Y  Y  V  T  C  Q  E  V  A  K  L  V  P  *  L  H  L  Q  S  W  S  Q  N  W  F  L  F  L  K  I  Q  H  S  Q  E  I  V  L  S  F  C  I  V  C  A  T  K  K  M  L  E  L  L  *  L  K  L  M  D  A  L  Q  Q  L  *  N  C  L  S  V  R  V  A  R  T  R  N  M  L  W  I  F  F  F  L  Y  A  F  N  G  F  N  I  V  N  W  *  W  M  K  V  S  S  L  N  S  S  L  Y  L  L  M  E  T  T  K  Q  R  Q  W  L  W  S  C  *  D  C  *  R  G  N  L  V  I  L  *  N  L  T  N  R  K  S  T  F  L  N  P  L  P  L  T  L  L  N  R  N  L  I  P  K  E  Q  E  F  L  G  N  F  S  Q  N  V  V  R  L  L  P  K  G  *  I  E  S  D  A  V  *  R  F  L  Y  D  R  M  C  I  I  S  Q  V  N  L  V  F  V  R  E  R  H  R  Q  *  A  F  I  L  L  *  L  L  E  S  W  D  R  R  C  N  Y  C  C  C  I  *  F  L  F  V  F  N  *  F  H  W  T  T  Y  S  G  V  *  C  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67823" stop="68518"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKEAIAIIEVLSRHQNCHHKITMSGALPILLEILDAHSRELQESAIKILCNMSGSSKIGSLIAPSELVPKLVPFLEDTALARNCVIILHSLCNKEDARIAIAETDGCIAAVVKLLERESRKDQEHAVDFLLSLCLQRVQYCQLVMDEGVIPELVSVSINGNNKAKAMALELLRLLKGEFSDTVESYEPEIDIPKPPTSDFTQQKSHSEGTGIFGKFFSKRSSTTAKRINRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="73013" PGL_stop="70337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73013" e_stop="72753"/>
            <exon e_start="72667" e_stop="72572"/>
            <exon e_start="72204" e_stop="71828"/>
            <exon e_start="71738" e_stop="71651"/>
            <exon e_start="71429" e_stop="71300"/>
            <exon e_start="71171" e_stop="70337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.180" acc_prob="0.684" e_score="0.985"/>
          <exon-intron don_prob="0.637" acc_prob="0.829" e_score="0.938"/>
          <exon-intron don_prob="1.000" acc_prob="0.919" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="0.559" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="73013" e_stop="72753" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.180" acc_prob="0.684">
            <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="72667" e_stop="72572" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.829">
            <gDNA_intron_boundary i_start="72571" i_stop="72205" i_length="367"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="72204" e_stop="71828" e_length="377"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.919">
            <gDNA_intron_boundary i_start="71827" i_stop="71739" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71738" e_stop="71651" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.559">
            <gDNA_intron_boundary i_start="71650" i_stop="71430" i_length="221"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71429" e_stop="71300" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.938">
            <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="71171" e_stop="70337" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73013" stop="72753"/>
              <exon start="72667" stop="72572"/>
              <exon start="72204" stop="71832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71896" stop="71828"/>
              <exon start="71738" stop="71651"/>
              <exon start="71429" stop="71300"/>
              <exon start="71171" stop="70337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG : CTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGG : GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGGAATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAG : CCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCAT : CTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG : GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAGCCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCTTTTCTTCTCTTTGGTTGCTTAGTAATGTTCCAAATTCATGTAGAATCCCTGAGGAAGTTCTCAACGCATGACCTTTGTATAAATGAGAATATTCGTTGTGCCATGTGCCAGTTTCTCCAATAGCATTCTCAT</gDNA_template>
            <first_frame> G  K  T  L  I  D  T  H  T  E  K  P  L  S  S  S  *  L  L  T  F  F  L  Q  F  V  G  G  I  N  G  G  F  S  V  V  V  P  L  V  F  P  A  T  *  H  E  V  *  S  V  A  D  P  V  F  H  L  I  R  R  V  F  S  F  F  D  L  C  I  P  Q  L  A  F  N  D  F  I  F  F  V  T  R  V  S  *  :  L  H  V  S  S  A  F  G  F  R  R  R  *  Y  Q  N  A  T  R  S  H  I  L  I  V  F  S  V  F  Y  S  R  :  G  S  C  S  *  C  D  *  *  K  C  L  *  R  A  L  F  V  S  *  G  R  *  K  M  V  *  G  I  Y  Q  G  G  E  Q  K  E  S  I  G  A  T  E  P  G  H  I  *  S  L  M  W  P  F  L  I  K  L  N  K  G  N  G  Q  I  Y  H  R  N  F  F  L  I  S  S  V  G  L  K  R  V  S  Y  H  G  L  L  D  P  P  F  S  F  V  H  L  F  A  N  R  G  G  E  L  P  R  R  L  L  R  L  L  R  N  V  V  G  L  P  F  P  F  H  *  N  S :   R  V  P  V  N  P  Q  S  S  A  L  L  N  G  T  E  L  I  Q  F  I  V  S  T  L  A  *  F  H  :  L  R  M  R  G  I  N  Y  C  C  L  P  K  K  S  E  G  Q  Q  T  Q  T  L  *  Y  H  L  L  Q  M  I  F  L  E  L  A  I  C  M  P  V  N  *   : G  L  T  F  L  G  P  S  S  P  Y  M  I  A  N  L  Q  V  M  Q  P  F  N  N  L  V  V  S  V  G  D  F  M  Q  N  K  F  L  Q  E  F  L  R  A  T  I  E  *  L  P  F  R  M  N  S  M  S  F  V  P  E  D  L  G  E  C  I  L  P  C  T  L  S  P  C  L  Q  S  R  R  V  A  V  L  Q  H  L  N  H  S  H  N  L  L  M  R  S  H  F  L  H  H  L  Q  *  Q  R  S  Q  L  W  I  S  A  P  L  A  F  Q  G  Q  Q  *  R  R  L  L  K  T  Y  L  C  *  K  T  R  L  L  G  G  M  N  N  C  S  A  G  A  *  I  L  K  A  V  L  Q  L  L  L  *  K  I  F  S  *  W  Q  Q  L  I  H  L  T  I  Y  Q  S  Q  N  K  K  K  *  F  Y  S  L  E  K  L  G  K  T  S  S  P  W  T  T  A  I  H  F  L  L  S  K  L  L  Q  S  A  *  A  A  L  T  R  S  Q  P  V  N  D  F  V  Q  I  A  N  Q  D  K  L  L  F  F  S  L  V  A  *  *  C  S  K  F  M  *  N  P  *  G  S  S  Q  R  M  T  F  V  *  M  R  I  F  V  V  P  C  A  S  F  S  N  S  I  L   </first_frame>
            <second_frame>  G  K  L  *  *  I  R  T  Q  R  S  P  F  R  L  P  S  S  *  H  F  S  F  N  L  L  A  E  L  T  A  V  F  R  W  W  C  H  W  C  F  R  R  H  D  M  K  S  K  A  S  P  I  Q  C  S  T  S  F  A  A  F  F  P  S  S  I  S  A  S  R  S  L  L  S  T  I  S  S  S  L  *  L  V  F  L  S :   C  M  S  A  L  L  L  V  F  V  G  D  S  T  K  M  P  Q  D  R  T  F  *  L  F  F  R  F  F  I  P  G :   E  V  A  V  D  V  I  D  R  N  V  F  E  E  H  C  S  *  A  E  G  D  E  R  W  Y  R  E  Y  I  K  E  G  N  R  K  K  A  L  E  Q  Q  N  P  V  T  Y  S  P  *  C  G  P  F  *  S  N  *  T  R  A  M  G  K  F  T  T  G  T  S  S  *  Y  H  P  *  G  *  R  E  *  V  I  M  A  C  S  I  R  P  S  L  L  C  I  C  L  Q  I  V  E  G  N  Y  Q  G  D  C  *  D  S  *  G  M  W  *  A  Y  L  S  H  F  T  E  T   : A  G  S  P  *  I  P  N  P  V  L  Y  *  T  G  Q  S  *  F  S  L  S  S  L  L  W  H  D  S  I :   *  G  *  E  G  *  T  I  V  V  C  Q  K  N  Q  K  G  N  K  H  R  L  C  D  I  I  C  C  R  *  F  F  S  S  *  Q  Y  V  C  R  *  T  E  :  V  *  L  S  W  D  Q  V  L  H  T  *  *  P  T  S  K  *  C  S  H  S  T  T  W  S  S  Q  S  E  I  S  C  K  T  S  F  S  K  S  S  C  V  Q  L  *  S  S  Y  H  F  V  *  T  Q  C  P  S  Y  Q  R  T  *  E  N  A  F  C  H  A  L  Y  P  L  V  F  N  P  G  G  W  Q  C  S  N  T  *  I  I  P  T  I  F  *  *  E  V  I  F  C  T  T  C  N  S  K  G  V  S  Y  G  Y  Q  L  L  W  H  F  K  V  S  S  N  G  D  F  S  R  H  T  C  A  K  K  Q  G  S  *  V  A  *  T  I  A  V  L  V  L  K  F  *  R  P  C  Y  S  C  F  C  E  K  F  S  A  S  G  S  S  *  S  I  S  Q  Y  T  S  R  R  T  R  K  S  N  F  T  V  W  K  N  W  E  R  H  L  H  H  G  L  P  L  S  T  F  C  F  P  S  F  C  N  L  L  E  Q  L  *  H  E  A  S  L  *  M  I  S  C  R  L  Q  I  K  I  S  S  F  S  S  L  W  L  L  S  N  V  P  N  S  C  R  I  P  E  E  V  L  N  A  *  P  L  Y  K  *  E  Y  S  L  C  H  V  P  V  S  P  I  A  F  S  </second_frame>
            <third_frame>   E  N  F  D  R  Y  A  H  R  E  A  P  F  V  F  L  A  P  D  I  F  P  S  I  C  W  R  N  *  R  R  F  F  G  G  G  A  T  G  V  S  G  D  M  T  *  S  L  K  R  R  R  S  S  V  P  P  H  S  P  R  F  F  L  L  R  S  L  H  P  A  A  C  F  Q  R  F  H  L  L  C  N  S  C  F  L   : A  A  C  Q  L  C  F  W  F  S  S  E  I  V  P  K  C  H  K  I  A  H  F  D  C  F  F  G  F  L  F  Q   : G  K  L  Q  L  M  *  L  I  E  M  S  L  K  S  I  V  R  E  L  R  E  M  K  D  G  I  G  N  I  S  R  R  G  T  E  R  K  H  W  S  N  R  T  R  S  H  I  V  P  D  V  A  L  S  D  Q  I  E  Q  G  Q  W  A  N  L  P  P  E  L  L  L  D  I  I  R  R  V  E  E  S  E  L  S  W  P  A  R  S  A  L  L  F  C  A  S  V  C  K  S  W  R  G  I  T  K  E  I  V  K  T  P  E  E  C  G  R  L  T  F  P  I  S  L  K  Q  :  P  G  P  R  E  S  P  I  Q  C  F  I  K  R  D  R  A  N  S  V  Y  R  L  Y  F  G  M  I  P   : S  E  D  E  R  D  K  L  L  L  S  A  K  K  I  R  R  A  T  N  T  D  F  V  I  S  F  V  A  D  D  F  S  R  A  S  N  M  Y  A  G  K  L  R :   S  N  F  L  G  T  K  F  S  I  H  D  S  Q  P  P  S  D  A  A  I  Q  Q  P  G  R  L  S  R  R  F  H  A  K  Q  V  S  P  R  V  P  A  C  N  Y  R  V  A  T  I  S  Y  E  L  N  V  L  R  T  R  G  P  R  R  M  H  S  A  M  H  S  I  P  L  S  S  I  Q  E  G  G  S  A  P  T  P  K  S  F  P  Q  S  F  D  E  K  S  F  S  A  P  L  A  I  A  K  E  S  A  M  D  I  S  S  S  G  I  S  R  S  A  V  T  A  T  S  Q  D  I  L  V  L  K  N  K  A  P  R  W  H  E  Q  L  Q  C  W  C  L  N  F  K  G  R  V  T  V  A  S  V  K  N  F  Q  L  V  A  A  V  D  P  S  H  N  I  P  V  A  E  Q  E  K  V  I  L  Q  F  G  K  I  G  K  D  I  F  T  M  D  Y  R  Y  P  L  S  A  F  Q  A  F  A  I  C  L  S  S  F  D  T  K  P  A  C  E  *  F  R  A  D  C  K  S  R  *  A  P  F  L  L  F  G  C  L  V  M  F  Q  I  H  V  E  S  L  R  K  F  S  T  H  D  L  C  I  N  E  N  I  R  C  A  M  C  Q  F  L  Q  *  H  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72184" stop="71828"/>
                    <exon start="71738" stop="71651"/>
                    <exon start="71429" stop="71300"/>
                    <exon start="71171" stop="70502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEMSLKSIVRELREMKDGIGNISRRGTERKHWSNRTRSHIVPDVALSDQIEQGQWANLPPELLLDIIRRVEESELSWPARSALLFCASVCKSWRGITKEIVKTPEECGRLTFPISLKQPGPRESPIQCFIKRDRANSVYRLYFGMIPSEDERDKLLLSAKKIRRATNTDFVISFVADDFSRASNMYAGKLRSNFLGTKFSIHDSQPPSDAAIQQPGRLSRRFHAKQVSPRVPACNYRVATISYELNVLRTRGPRRMHSAMHSIPLSSIQEGGSAPTPKSFPQSFDEKSFSAPLAIAKESAMDISSSGISRSAVTATSQDILVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNIPVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72873" stop="72753"/>
                    <exon start="72667" stop="72572"/>
                    <exon start="72204" stop="72185"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKRRRSSVPPHSPRFFLLRSLHPAACFQRFHLLCNSCFLAACQLCFWFSSEIVPKCHKIAHFDCFFGFLFQGKLQLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73012" e_stop="72753"/>
            <exon e_start="72204" e_stop="71942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.180" acc_prob="0.829" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73012" e_stop="72753" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.180" acc_prob="0.829">
            <gDNA_intron_boundary i_start="72752" i_stop="72205" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72204" e_stop="71942" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73012" stop="72753"/>
              <exon start="72204" stop="71942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG : GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGA</gDNA_template>
            <first_frame> G  K  L  *  *  I  R  T  Q  R  S  P  F  R  L  P  S  S  *  H  F  S  F  N  L  L  A  E  L  T  A  V  F  R  W  W  C  H  W  C  F  R  R  H  D  M  K  S  K  A  S  P  I  Q  C  S  T  S  F  A  A  F  F  P  S  S  I  S  A  S  R  S  L  L  S  T  I  S  S  S  L  *  L  V  F  L  R :   E  V  A  V  D  V  I  D  R  N  V  F  E  E  H  C  S  *  A  E  G  D  E  R  W  Y  R  E  Y  I  K  E  G  N  R  K  K  A  L  E  Q  Q  N  P  V  T  Y  S  P  *  C  G  P  F  *  S  N  *  T  R  A  M  G  K  F  T  T  G  T  S  S  *  Y  H  P  *  G  *  R  E  *  V  I  M  A  C  S  </first_frame>
            <second_frame>  E  N  F  D  R  Y  A  H  R  E  A  P  F  V  F  L  A  P  D  I  F  P  S  I  C  W  R  N  *  R  R  F  F  G  G  G  A  T  G  V  S  G  D  M  T  *  S  L  K  R  R  R  S  S  V  P  P  H  S  P  R  F  F  L  L  R  S  L  H  P  A  A  C  F  Q  R  F  H  L  L  C  N  S  C  F  L   : G  K  L  Q  L  M  *  L  I  E  M  S  L  K  S  I  V  R  E  L  R  E  M  K  D  G  I  G  N  I  S  R  R  G  T  E  R  K  H  W  S  N  R  T  R  S  H  I  V  P  D  V  A  L  S  D  Q  I  E  Q  G  Q  W  A  N  L  P  P  E  L  L  L  D  I  I  R  R  V  E  E  S  E  L  S  W  P  A  R </second_frame>
            <third_frame>   K  T  L  I  D  T  H  T  E  K  P  L  S  S  S  *  L  L  T  F  F  L  Q  F  V  G  G  I  N  G  G  F  S  V  V  V  P  L  V  F  P  A  T  *  H  E  V  *  S  V  A  D  P  V  F  H  L  I  R  R  V  F  S  F  F  D  L  C  I  P  Q  L  A  F  N  D  F  I  F  F  V  T  R  V  S  *  :  G  S  C  S  *  C  D  *  *  K  C  L  *  R  A  L  F  V  S  *  G  R  *  K  M  V  *  G  I  Y  Q  G  G  E  Q  K  E  S  I  G  A  T  E  P  G  H  I  *  S  L  M  W  P  F  L  I  K  L  N  K  G  N  G  Q  I  Y  H  R  N  F  F  L  I  S  S  V  G  L  K  R  V  S  Y  H  G  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72184" stop="71942"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEMSLKSIVRELREMKDGIGNISRRGTERKHWSNRTRSHIVPDVALSDQIEQGQWANLPPELLLDIIRRVEESELSWPAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="85297" PGL_stop="85975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85297" e_stop="85431"/>
            <exon e_start="85518" e_stop="85762"/>
            <exon e_start="85884" e_stop="85975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85297" e_stop="85431" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85432" i_stop="85517" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85518" e_stop="85762" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.993">
            <gDNA_intron_boundary i_start="85763" i_stop="85883" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85884" e_stop="85975" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85297" stop="85431"/>
              <exon start="85518" stop="85762"/>
              <exon start="85884" stop="85975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTG : GCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAG : GGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</gDNA_template>
            <first_frame> E  Q  I  V  Q  C  K  T  N  G  Y  S  K  W  R  I  S  R  A  N  Y  I  C  *  R  R  R  *  S  S  N  Q  C  Y  *  L  C  T  I  *  L  V  H  P  L  :  A  W  F  E  T  I  S  *  W  L  G  R  R  S  S  L  H  N  S  M  P  Y  P  D  R  K  *  L  C  L  *  F  Q  C  N  R  T  K  R  N  L  M  V  A  C  T  Y  S  L  A  K  G  N  C  L  W  C  N  S  D  N  A  T  K  R  H  S  L  P  F  S  S  T  R  *  G  R  S  T  R  T  R :   G  M  V  E  C  *  C  *  S  S  *  E  T  R  K  C  I  G  Y  S  S  *  Y  V  *  C  S  H  D  Q  </first_frame>
            <second_frame>  S  R  L  C  N  A  K  Q  M  V  T  V  N  G  G  F  P  G  P  T  I  Y  A  R  E  G  D  R  V  Q  I  N  V  T  N  Y  V  Q  Y  N  L  S  I  H  W :   H  G  L  K  Q  Y  R  N  G  W  A  D  G  P  A  Y  I  T  Q  C  P  I  Q  T  G  N  S  Y  V  Y  D  F  N  V  T  G  Q  R  G  T  L  W  W  H  A  H  I  L  W  L  R  A  T  V  Y  G  A  I  V  I  M  P  Q  K  G  T  P  F  P  F  P  Q  P  D  R  E  E  V  L  V  L   : G  E  W  W  N  A  D  V  E  A  V  E  K  Q  G  N  A  L  G  I  P  P  N  M  S  D  A  H  T  I  N </second_frame>
            <third_frame>   A  D  C  A  M  Q  N  K  W  L  Q  *  M  A  D  F  Q  G  Q  L  Y  M  L  E  K  E  I  E  F  K  S  M  L  L  T  M  Y  N  I  T  C  P  S  I   : G  M  V  *  N  N  I  V  M  V  G  Q  T  V  Q  L  T  *  L  N  A  L  S  R  Q  E  I  A  M  F  M  I  S  M  *  Q  D  K  E  E  P  Y  G  G  M  H  I  F  F  G  *  G  Q  L  S  M  V  Q  *  *  *  C  H  K  K  A  L  P  S  L  F  L  N  Q  I  G  K  K  Y  S  Y  *  :  G  N  G  G  M  L  M  L  K  Q  L  R  N  K  E  M  H  W  V  F  L  L  I  C  L  M  L  T  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85298" stop="85431"/>
                    <exon start="85518" stop="85762"/>
                    <exon start="85884" stop="85975"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLCNAKQMVTVNGGFPGPTIYAREGDRVQINVTNYVQYNLSIHWHGLKQYRNGWADGPAYITQCPIQTGNSYVYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQKGTPFPFPQPDREEVLVLGEWWNADVEAVEKQGNALGIPPNMSDAHTIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="86775" PGL_stop="86340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86775" e_stop="86340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86775" e_stop="86340" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86775" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</gDNA_template>
            <first_frame> L  R  L  A  V  R  G  A  P  V  K  L  N  G  V  G  G  L  S  G  K  S  G  V  Y  T  P  L  M  L  K  *  *  D  *  R  S  A  V  C  G  M  I  K  E  M  L  F  R  D  A  V  S  L  V  P  F  R  Q  V  G  Q  G  L  I  P  R  P  T  V  N  K  R  C  R  S  T  F  R  G  T  F  A  G  Y  L  G  V  F  R  L  L  S  L  K  L  *  L  K  A  K  S  E  S  F  C  A  G  K  V  G  S  F  G  I  T  V  S  G  I  P  L  Y  W  K  I  A  V  A  V  L  L  S  T  L  I  G  A  S  M  K  A  L  A  A  </first_frame>
            <second_frame>  L  G  W  L  *  G  V  P  L  *  N  *  M  E  *  V  V  C  L  G  N  L  E  C  T  H  P  *  C  *  S  N  E  T  E  E  V  Q  F  V  A  *  *  R  K  C  C  S  E  M  L  *  A  *  F  H  L  D  R  W  D  K  D  *  F  L  G  Q  L  *  T  R  G  V  D  Q  H  L  G  E  R  L  L  D  I  W  E  Y  L  G  F  *  V  *  S  Y  S  S  K  Q  S  L  S  H  F  V  Q  A  R  *  E  V  L  E  S  R  F  L  G  F  P  C  T  G  K  *  Q  W  Q  S  C  Y  P  H  *  L  E  H  P  *  R  P  L  Q  P </second_frame>
            <third_frame>   *  V  G  C  K  G  C  P  C  K  I  E  W  S  R  W  F  V  W  E  I  W  S  V  H  T  L  N  V  E  V  M  R  L  K  K  C  S  L  W  H  D  K  G  N  V  V  Q  R  C  C  K  P  S  S  I  *  T  G  G  T  R  I  N  S  *  A  N  C  K  Q  E  V  S  I  N  I  *  G  N  V  C  W  I  F  G  S  I  *  A  F  E  F  K  V  I  A  Q  S  K  V  *  V  I  L  C  R  Q  G  R  K  F  W  N  H  G  F  W  D  S  L  V  L  E  N  S  S  G  S  L  V  I  H  T  D  W  S  I  H  E  G  P  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88114" PGL_stop="92502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88114" e_stop="88331"/>
            <exon e_start="88557" e_stop="88643"/>
            <exon e_start="89367" e_stop="89477"/>
            <exon e_start="89736" e_stop="89787"/>
            <exon e_start="90079" e_stop="90216"/>
            <exon e_start="90716" e_stop="90814"/>
            <exon e_start="91146" e_stop="91243"/>
            <exon e_start="91630" e_stop="91737"/>
            <exon e_start="91846" e_stop="91927"/>
            <exon e_start="92166" e_stop="92502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="88114" e_stop="88331" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88557" e_stop="88643" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89367" e_stop="89477" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89736" e_stop="89787" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90079" e_stop="90216" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90716" e_stop="90814" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91146" e_stop="91243" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91630" e_stop="91737" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="91846" e_stop="91927" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92166" e_stop="92502" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88114" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG : ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</gDNA_template>
            <first_frame> Y  S  N  L  L  *  R  H  N  I  Q  F  K  *  F  S  G  Q  Q  G  L  H  R  A  I  K  R  E  L  Q  L  K  A  K  K  T  Y  F  L  Q  I  L  S  N  F  A  I  K  *  K  M  A  A  L  S  M  T  W  S  C  S  P  L  T  S  S  K  F  R  R  V  N  R :   Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  </first_frame>
            <second_frame>  I  R  T  Y  C  R  G  T  I  S  S  L  S  S  S  V  D  N  K  D  C  T  E  Q  *  K  E  N  F  S  *  K  Q  K  R  L  T  F  C  K  S  L  V  I  L  P  S  N  R  R  W  Q  H  C  L  *  P  G  L  A  L  P  *  P  P  Q  N  F  G  E  S  I   : D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F </second_frame>
            <third_frame>   F  E  L  I  V  E  A  Q  Y  P  V  *  V  V  Q  W  T  T  R  T  A  Q  S  N  K  K  R  T  S  V  E  S  K  K  D  L  L  F  A  N  P  *  *  F  C  H  Q  I  E  D  G  S  I  V  Y  D  L  V  L  L  S  L  N  L  L  K  I  S  A  S  Q  S  :  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88261" stop="88331"/>
                    <exon start="88557" stop="88643"/>
                    <exon start="89367" stop="89477"/>
                    <exon start="89736" stop="89787"/>
                    <exon start="90079" stop="90216"/>
                    <exon start="90716" stop="90814"/>
                    <exon start="91146" stop="91243"/>
                    <exon start="91630" stop="91737"/>
                    <exon start="91846" stop="91927"/>
                    <exon start="92166" stop="92231"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAALSMTWSCSPLTSSKFRRVNRYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97732" PGL_stop="95698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97732" e_stop="97283"/>
            <exon e_start="96977" e_stop="96875"/>
            <exon e_start="96179" e_stop="95971"/>
            <exon e_start="95809" e_stop="95698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97732" e_stop="97283" e_length="450"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97282" i_stop="96978" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96875" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96179" e_stop="95971" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="95809" e_stop="95698" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="97283"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="95971"/>
              <exon start="95809" stop="95698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTT</gDNA_template>
            <first_frame> K  K  Q  S  R  K  S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C  Q  E  P  A  F  L  S  S  A  I  S  L  Q  Y  S  *  Q  G  H  S  N  S  V  S  *  I  F  </first_frame>
            <second_frame>  K  N  K  V  A  N  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L  V  K  N  Q  P  S  C  L  Q  L  Y  L  Y  S  T  A  D  K  V  I  P  I  Q  S  V  E  S  F </second_frame>
            <third_frame>   K  T  K  S  Q  I  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  S  R  T  S  L  P  V  F  S  Y  I  F  T  V  Q  L  T  R  S  F  Q  F  S  Q  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97731" stop="97283"/>
                    <exon start="96977" stop="96875"/>
                    <exon start="96179" stop="95971"/>
                    <exon start="95809" stop="95698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKVANPPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRSYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVLVKNQPSCLQLYLYSTADKVIPIQSVESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97714" e_stop="97073"/>
            <exon e_start="96977" e_stop="96875"/>
            <exon e_start="96179" e_stop="95971"/>
            <exon e_start="95809" e_stop="95780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="97714" e_stop="97073" e_length="642"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96875" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96179" e_stop="95971" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="95809" e_stop="95780" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97714" stop="97073"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="95971"/>
              <exon start="95809" stop="95780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGT</gDNA_template>
            <first_frame> S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C </first_frame>
            <second_frame>  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L   </second_frame>
            <third_frame>   L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L   : L  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97713" stop="97073"/>
                    <exon start="96977" stop="96875"/>
                    <exon start="96179" stop="95971"/>
                    <exon start="95809" stop="95782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLAYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 39248 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2180 bytes was the average size of a spliced alignment
$ 20112 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1676 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:16:59
-->
