<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:16:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g08420" ref_strand="+" ref_description="C2_At5g08420">
      <seq>cttcccttaaccctgagccgccattggcgtctgtaactgctctttctgcaatttgtgcgtttctctgtaaaatttcattgggtggattgataatttgtggagttttggtacagtttggagtaactgcaatggcagatgaggagaatttaacggttaatgaagagctgattccaaagccaaggcacaaggggaaacatgacaaaccaaagccatgggatgatgaaagcatcgaccattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctaatgtaaaaggtgccttgaaagagcatggaattgcctgtgaacttaacttggttgaaggatccatgacagtttctactactatgaaaacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgtccctgctcctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacatcatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactttaaaggccctggaaattttaaccggctgctatatccttgttcagggaaacacagttgctgctatgggttcctttaaaggtctaaagcaggcgaagagggttatagaggactgcatattgaaacagatgcatccactacatcatatcaagatcctcatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23665" stop="29968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23965" g_stop="24279" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="401" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="512" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="581" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="638" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="677" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29562" g_stop="29666" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="782" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29785" g_stop="29797" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="795" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="C2_At5g08420" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g08420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23965" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29666"/>
          <exon e_start="29785" e_stop="29797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGT--AA-GT--TT---T-CATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAGGTAAATGAACAAGTGCATGATAATTAAAAATGAATTTCATTGGGTATTTGGCTATTTATTATGCTCTGGCTAAAAGATCTGATAATTTACTTTTGCTGACGTACCCCTTCGACCTCAGATCCTCATGCTGA</genome_strand>
        <mrna_strand>CTTCCCTTAACCCTGAGCCGCCATTGGCGTCTGTAACTGCTCTTTCTGCAATTTGTGCGTTTCTCTGTAAAATTTCATTGGGTGGATTGATAATTTGTGGAGTTTTGGTACAGTTTGGAGTAACTGCAATGGCAGATGAGGAGAATTTAACGGTTAATGAAGAGCTGATTCCAAAGCCAAGGCACAAGGGGAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATCGACCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTAATGTAAAAGGTGCCTTGAAAGAGCATGGAATTGCCTGTGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCCATGACAGTTTCTACTACTATGAAAACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTCCCTGCTCCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATCATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTAACCGGCTGCTATATCCTTGTTCAG........................................................................................................................................................GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAGGCGAAGAGGGTTATAGAGGACTGCATATTGAAACAGATGCATCCACTACATCATATCAAG......................................................................................................................ATCCTCATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1292" ref_strand="+" ref_description="T1292">
      <seq>agtaaacaactcctaaaaatattcaatcaacatcatacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcgattgagcaaaaaaaaaatctgcatttttctataaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctccgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgntttcttttccatatcaatacaacgagctattggggaaacactattcattatcttcttcatggctgtcatcataagcatcccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131526" stop="127966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131235" g_stop="131103" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.94"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="202" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="295" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="492" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128266" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="T1292" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="T1292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131235" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</genome_strand>
        <mrna_strand>AGTAAA--CAACTCCTAAAAATATTCAATCAACATCATACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCGATTGAGCAAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCCGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGNTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACTATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23965" PGL_stop="29797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23965" e_stop="24279"/>
            <exon e_start="25530" e_stop="25606"/>
            <exon e_start="26760" e_stop="26870"/>
            <exon e_start="27759" e_stop="27827"/>
            <exon e_start="28729" e_stop="28785"/>
            <exon e_start="29371" e_stop="29409"/>
            <exon e_start="29562" e_stop="29666"/>
            <exon e_start="29785" e_stop="29797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.139" e_score="0.883"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.961"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.013" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.927" e_score="0.949"/>
          <exon-intron don_prob="0.965" acc_prob="0.335" e_score="0.952"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.883">
            <gDNA_exon_boundary e_start="23965" e_stop="24279" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.139">
            <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="25530" e_stop="25606" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="26760" e_stop="26870" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="27759" e_stop="27827" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28729" e_stop="28785" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.013" acc_prob="0.881">
            <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="0.949">
            <gDNA_exon_boundary e_start="29371" e_stop="29409" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.927">
            <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="0.952">
            <gDNA_exon_boundary e_start="29562" e_stop="29666" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.335">
            <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29785" e_stop="29797" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23965" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g08420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG : AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG : GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG : GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG : GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG : GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG : GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG : ATCCTCATGCTGA</gDNA_template>
            <first_frame> L  P  L  T  L  S  R  H  W  P  L  *  L  L  F  L  Q  F  V  R  F  S  V  S  F  H  *  *  F  V  E  F  R  F  S  F  D  *  L  Q  W  Q  M  R  R  I  *  Q  L  M  K  S  *  F  R  S  R  G  T  R  E  N  M  T  N  Q  S  H  G  M  M  K  A  L  I  I  G  R  L  R  S  L  I  L  P  G  T  R  V  D  C  L  K  S  V  R  F  Q  L  Y  S  L  S  T  E  :  R  N  I  C  K  S  V  G  L  L  *  K  V  R  *  K  S  M  E  L  P  A  N  L  T  W :   L  K  D  L  *  Q  F  L  L  L  *  R  Q  G  I  P  I  L  L  *  K  L  G  I  *  *  N  F  C  Q  E  V  F  L  H  L  R :   L  S  K  S  *  M  M  R  C  N  V  T  *  S  R  S  A  T  W  F  A  T  R :   S  A  L  L  N  A  D  N  I  L  W  V  P  I  R  Q  L  *  R :   P  W  K  F  *  P  A  A  I  S  L  S  R :   E  T  Q  L  L  L  W  V  P  L  K  V  *  S  K  R  G  G  L  *  R  T  A  Y  *  T  R  C  I  R  Y  I  I  S  R :   S  S  C  * </first_frame>
            <second_frame>  F  L  *  P  *  A  A  I  G  L  C  N  C  Y  F  C  S  L  C  V  S  L  *  V  F  I  D  N  L  W  N  F  G  S  V  S  T  D  C  N  G  R  *  G  E  F  N  S  *  *  R  V  D  S  E  A  E  A  Q  G  K  T  *  Q  T  K  A  M  G  *  *  K  H  *  S  L  E  D  *  E  V  *  S  F  L  E  P  E  W  I  A  *  S  Q  F  V  F  N  S  I  P  S  V  Q  R :   E  I  F  A  R  V  L  A  Y  C  K  R  C  V  E  R  A  W  N  C  L  R  T  *  L   : G  *  R  I  Y  D  S  F  Y  Y  Y  E  D  K  G  S  L  Y  Y  C  K  S  *  G  F  D  K  T  F  V  K  K  C  S  C  T  S   : G  C  Q  N  P  E  *  *  D  A  M  *  H  N  Q  D  R  Q  H  G  S  Q  Q   : G  A  L  C  *  T  Q  T  I  S  C  G  S  Q  F  V  N  F  K   : G  P  G  N  F  D  R  L  L  Y  P  C  P   : G  K  H  S  C  C  Y  G  F  L  *  R  S  K  A  S  E  E  G  Y  R  G  L  H  I  E  Q  D  A  S  A  T  S  Y  Q   : D  P  H  A   </second_frame>
            <third_frame>   S  F  N  P  E  P  P  L  A  S  V  T  A  I  S  A  V  C  A  F  L  C  K  F  S  L  I  I  C  G  I  S  V  Q  F  R  L  T  A  M  A  D  E  E  N  L  T  V  N  E  E  L  I  P  K  P  R  H  K  G  K  H  D  K  P  K  P  W  D  D  E  S  I  D  H  W  K  I  E  K  F  D  P  S  W  N  Q  S  G  L  L  E  V  S  S  F  S  T  L  F  P  Q  Y  R   : E  K  Y  L  Q  E  C  W  P  T  V  K  G  A  L  K  E  H  G  I  A  C  E  L  N  L  :  V  E  G  S  M  T  V  S  T  T  M  K  T  R  D  P  Y  I  I  V  K  A  R  D  L  I  K  L  L  S  R  S  V  P  A  P  Q  :  A  V  K  I  L  N  D  E  M  Q  C  D  I  I  K  I  G  N  M  V  R  N  K  :  E  R  F  V  K  R  R  Q  Y  L  V  G  P  N  S  S  T  L  K  :  A  L  E  I  L  T  G  C  Y  I  L  V  Q  :  G  N  T  V  A  A  M  G  S  F  K  G  L  K  Q  A  R  R  V  I  E  D  C  I  L  N  K  M  H  P  L  H  H  I  K  :  I  L  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23967" stop="24279"/>
                    <exon start="25530" stop="25606"/>
                    <exon start="26760" stop="26870"/>
                    <exon start="27759" stop="27827"/>
                    <exon start="28729" stop="28785"/>
                    <exon start="29371" stop="29409"/>
                    <exon start="29562" stop="29666"/>
                    <exon start="29785" stop="29796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFNPEPPLASVTAISAVCAFLCKFSLIICGISVQFRLTAMADEENLTVNEELIPKPRHKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="131235" PGL_stop="128266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131235" e_stop="131103"/>
            <exon e_start="129553" e_stop="129484"/>
            <exon e_start="128896" e_stop="128804"/>
            <exon e_start="128622" e_stop="128426"/>
            <exon e_start="128319" e_stop="128266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.702" e_score="0.925"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.994" e_score="0.990"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="131235" e_stop="131103" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.702">
            <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="129553" e_stop="129484" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128896" e_stop="128804" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.882">
            <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="128622" e_stop="128426" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.781" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="128319" e_stop="128266" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131235" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT : CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG : GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG : TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG : GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</gDNA_template>
            <first_frame> G  K  V  N  N  *  K  Y  S  I  N  I  T  Q  P  A  V  E  C  F  V  V  C  T  *  R  G  H  H  L  G  I  L  S  I  E  Q  K  K  I  C  I  F  L   : S  I  S  W  C  P  R  W  L  H  K  A  S  L  W  I  *  I  S  H  L  Y  T  R :   L  A  T  L  E  K  L  I  K  S  G  F  T  S  P  L  S  A  R  K  V  L  D  F  L  L  V  T  F  G  S :   F  *  L  A  Q  F  G  G  Q  F  L  P  Y  G  F  Q  L  C  A  I  A  S  L  F  L  S  V  W  V  V  L  F  Q  R  W  H  C  W  W  F  L  A  F  S  S  G  H  *  W  N  T  L  F  I  V  F  F  S  I  S  I  Q  R  A  I   : G  E  T  Q  F  I  I  F  F  M  A  V  I  I  S  I  P  W  </first_frame>
            <second_frame>  V  K  *  T  T  K  N  I  Q  S  T  S  H  S  Q  Q  *  S  V  L  W  S  A  H  R  E  G  T  T  *  G  S  F  Q  L  S  K  K  K  S  A  F  F  Y  :  Q  L  A  G  V  H  D  G  C  T  R  L  H  C  G  F  R  *  A  T  C  T  P   : G  W  P  P  W  R  S  L  S  R  V  G  S  P  A  H  C  Q  Q  G  R  S  S  I  F  C  *  *  L  L  G   : V  S  D  S  H  S  L  V  G  N  S  Y  H  M  A  S  S  C  V  L  *  H  L  C  F  Y  P  Y  G  S  Y  C  S  R  G  G  T  V  G  G  F  W  H  F  H  L  D  T  D  G  I  H  S  S  S  F  S  F  P  Y  Q  Y  N  E  L  L  :  G  K  H  N  S  L  S  S  S  W  L  S  S  *  A  S  H  G </second_frame>
            <third_frame>   *  S  K  Q  L  K  I  F  N  Q  H  H  T  A  S  S  R  V  F  C  G  L  H  I  E  R  A  P  L  R  D  P  F  N  *  A  K  K  N  L  H  F  S  I :   N  *  L  V  S  T  M  V  A  Q  G  F  T  V  D  L  D  K  P  L  V  H  Q  :  V  G  H  L  G  E  A  Y  Q  E  W  V  H  Q  P  I  V  S  K  E  G  P  R  F  F  A  S  D  F  W  E  :  F  L  T  R  T  V  W  W  A  I  P  T  I  W  L  P  V  V  C  Y  S  I  S  V  S  I  R  M  G  R  T  V  P  E  V  A  L  L  V  V  F  G  I  F  I  W  T  L  M  E  Y  T  L  H  R  F  L  F  H  I  N  T  T  S  Y  W :   G  N  T  I  H  Y  L  L  H  G  C  H  H  K  H  P  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129546" stop="129484"/>
                    <exon start="128896" stop="128804"/>
                    <exon start="128622" stop="128426"/>
                    <exon start="128319" stop="128268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSTMVAQGFTVDLDKPLVHQVGHLGEAYQEWVHQPIVSKEGPRFFASDFWEFLTRTVWWAIPTIWLPVVCYSISVSIRMGRTVPEVALLVVFGIFIWTLMEYTLHRFLFHINTTSYWGNTIHYLLHGCHHKHPM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 4560 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:16:42
-->
