<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:13:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582036" ref_strand="+" ref_description="SGN-U582036 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157344527|emb|CAO69910.1| (e_value=5e-54) unnamed; (*ATH) AT5G44360.1 (e_value=2e-49)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=7e-38) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>caatcagtattcttcaaagggaaatcagactatgtccaacgtccaatttctataaatggtcttgaaggtatatggaaactattcaaccaagtaggcgaaaactcggctgaattacaattaagtccctatggaggaaagttaagtgagatatcggaatctgaaacacccttccctcatagagatggaaacatactcatgatccattatggggtgaattggggtgaaatggaaagttctaataagcatatatcttggattcgaaacctttatggatacatggctaggtatgcatcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggagtgaacaacaaaggaaacacaagctatgaacaagcaagagtttggggagtgaaatatttcaacaacaactttgatagattggtcaaaatcaagacaaaagttgatccaacaaacttctttagaaatgaacaaagtgttcctcctctatatatataatttatgcactctacaaataaggcttatcatatatagtagttcttttatgtatatatatagtaatatagtactgaaaaataaatgtagccaaggtgcgtttcaaacatattgtgtaagatatatattgtttgatttataatatttttttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="6219" stop="5028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5919" g_stop="5266" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U582036" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5919" e_stop="5266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAGGATTCTTCAAAGGGAAATCAGACTATGTCCAACGTCCAATTCCTATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTGAGTGAGATATCGGAATCTGAAACACCTTTCCCTCATAGAGATGGAAACATATTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAATAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGTGTCAAGATCTCCTAGAGCTGCTTATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTGGTCAAAATCAAGACTAAAGTTGATCCAACAAATTTCTTTAGGAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATGTATATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAGGAAGCCTTCCAAAGATATTTTATAAGATGTATTATTGTTTGATTTGTAATAAATTTTCTATGT</genome_strand>
        <mrna_strand>CAATCAGTATTCTTCAAAGGGAAATCAGACTATGTCCAACGTCCAATTTCTATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTAAGTGAGATATCGGAATCTGAAACACCCTTCCCTCATAGAGATGGAAACATACTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAATAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGCATCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTGGTCAAAATCAAGACAAAAGTTGATCCAACAAACTTCTTTAGAAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATG--TATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAAGGTGCGTTTCAAACATATTGTGTAAGATATA-TATTGTTTGATTTATAATATTTTTTTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574079" ref_strand="+" ref_description="SGN-U574079 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147845848|emb|CAN80091.1| (e_value=1e-96) hypothetical; (*ATH) AT5G44440.1 (e_value=3e-88)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=8e-74) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>gcttaacaatctttttctttctctcaatttgcctaatttcatcatcatgggctaacaaaactcatgatgactttcttgaatgcctttctcataaaattatgaattcaaactcaaaatcacaagttatctacactcctaaaaactcatcatattccaccctttataactctttttcaagtaatctaaggataacttccgatttcaaaccatcaattattttcactcctaatgatgaatctcaaatccaggcagctatacattgctccaagaaacatggcttacaaattagaattcgaggcggtggacatgattatgagggactttcatacatttctgaaaccccttttgtcataattgatcttagaaacctaagagcaatatccattgatacggaagacaagactgcttggattcaagctggggcgagactaggggaagtttactatagaatcgcggaaaaaagtaaaaaattagcctttgttgctggggtttgccctactgttggtgttggtggacactttagtggtggagggtatggcatgatgtcacgaaaattcggtactgctgctgataacatcattgatgcaaaactaattgatgctaatggacgaatccaagatcgagaatcaatgggtgaggatcacttttgggctattagaggaagtggagggactagttttggtctcattatctcatggaaagtgaaaatacttgatattccacaaaaggtaactgtattcaatgtgacacgaacgttggaacaaaatgcaactcaactagtctacaaatggcaacatatcgcggacaaagttgatgacaatctcctcctcaggatcttcctgaggagcaatattgaatctccattcaggcgtggacaaaggactgtccacgcctttttcactacaatgtttgttggaggagtagatgaactcctccgcgaaatgcaaaatagcttcccagaactagggttagtgaaagacgattgcattgagatgagttggatcgaatctatactcttctttgcgggtttccctaggggaacatcacttgatgtgttactagattggaatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="14820" stop="13149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14522" g_stop="13449" g_length="1074"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1074" r_length="1074" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U574079" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14522" e_stop="13449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTAGAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTAGTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATTCAAGATCGAGAGTCAATGGGTGAGGATCACTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAGGTGAAATTAGTTGATATTCCACAAAAGGTAACTGTATTCAATGTGACACGAACGTTGGAACAAAATGCAACTCAACTAGTCTACAAATGGCAACATATCGCGGACAAAGTTGATGACAATCTCCTCCTCAGGATCTTCCTGAGGAGCAATATTGAATCTCCATTCAGGCGTGGACAAAGGACTGTCCACGCCTTTTTCACTACAATGTTTGTTGGAGGAGTAGATGAACTCCTCCGCGAAATGCAAAATAGCTTCCCAGAACTAGGGTTAGTGAAAGACGATTGCATTGAGATGAGTTGGATCGAATCTATACTCTTCTTTGCGGGTTTCCCTAGGGGAACATCACTTGATGTGTTACTAGATTGGAATACCA</genome_strand>
        <mrna_strand>GCTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCATAAAATTATGAATTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATAACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGAAACATGGCTTACAAATTAGAATTCGAGGCGGTGGACATGATTATGAGGGACTTTCATACATTTCTGAAACCCCTTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGGGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAACTAATTGATGCTAATGGACGAATCCAAGATCGAGAATCAATGGGTGAGGATCACTTTTGGGCTATTAGAGGAAGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAAGTGAAAATACTTGATATTCCACAAAAGGTAACTGTATTCAATGTGACACGAACGTTGGAACAAAATGCAACTCAACTAGTCTACAAATGGCAACATATCGCGGACAAAGTTGATGACAATCTCCTCCTCAGGATCTTCCTGAGGAGCAATATTGAATCTCCATTCAGGCGTGGACAAAGGACTGTCCACGCCTTTTTCACTACAATGTTTGTTGGAGGAGTAGATGAACTCCTCCGCGAAATGCAAAATAGCTTCCCAGAACTAGGGTTAGTGAAAGACGATTGCATTGAGATGAGTTGGATCGAATCTATACTCTTCTTTGCGGGTTTCCCTAGGGGAACATCACTTGATGTGTTACTAGATTGGAATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574081" ref_strand="+" ref_description="SGN-U574081 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351641|emb|CAO42600.1| (e_value=3e-52) unnamed; (*ATH) AT4G20820.1 (e_value=2e-47)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=9e-45) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>cgcaaataatcaaatgatgactagtttcaacaagttaacaatcctttttctttctctcaatttgcctaatttcatcatcatgggctaacaaaactcatgatgactttcttgaatgcctttctcacaaaattatgaactcaaccttaatatcacaagtaatccacactcctaaaaactcatcatattcaaccatttataactcctattcagataacgtaaggataacctccgacttcaaaccatcaattattttcactcctaccaaagaatctcaaatccaggcagctatacattgctccaagatacatgacctacaaattaggattcgaagcggtggacatgactatgagggactttcatacacttcggacaccccttttttcataattgatcttacaaacctaagatcaatatccgttgatacccaaaaaaagactgcttggattcaagctggcgcgactctaggggaagtttactatagaatcgcggaaaaaagtaaaaaattggctgtacttgctggggtttgcccaactgttggtgttggcggacactttagtggtggaggctatggcatgatgtcacgaaaattcggtactgctgctgataacatcattgatgcaaaattaattgatgctaatggacgaattcaagatcgagagtcaatgggtgaggatcacttttgggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="14852" stop="13568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14554" g_stop="13868" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U574081" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14554" e_stop="13868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAAT-CTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTAGAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTAGTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATTCAAGATCGAGAGTCAATGGGTGAGGATCACTTTTGGGCTAT</genome_strand>
        <mrna_strand>CGCAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAATCCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTACAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTACTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGCGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATTCAAGATCGAGAGTCAATGGGTGAGGATCACTTTTGGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582821" ref_strand="+" ref_description="SGN-U582821 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30315245|gb|AAP30841.1| (e_value=1e-38) nectarin 5 [Nicotiana langsdorffii x Nicotiana sanderae]; (*ATH) AT5G44410.1 (e_value=1e-34)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=4e-25) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>gcacgaggattcctttccctcatagagctggaaatatattcacgatcgagtatggagtgtattggagtaaaatcgaaaattctcaaagaaatatagcttggattcgaaaactttatgaatacatgggtaagtatgtgtcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggaatgaacaatattaatggaaacacaagctatgatgaagcaagagtttggggagtgaaatatttcaagagcaactttgatagattagtacaagtcaagactaagtttgatccaactaatttctttaggaatcaacaaagtattcctcctctattatctttaggttataatatatggtagttaatttatatataatactatagtactgaaaaataaatgtacgtagcaaggatcgatttgtttcaaagattatgtacgatatatattgtttgatttan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="26035" stop="24982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25744" g_stop="25281" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U582821" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25744" e_stop="25281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGAAATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTTAT</genome_strand>
        <mrna_strand>GCA-CGAGGATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAAAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGATGAAGCAAGAGTTTGGGGAGTGAAATATTTCAAGAGCAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574080" ref_strand="+" ref_description="SGN-U574080 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157351641|emb|CAO42600.1| (e_value=1e-81) unnamed; (*ATH) AT5G44440.1 (e_value=7e-72)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=5e-63) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>ctatatgtatgaataagcataacaactactgcaacaacaaataatcaattatgagtaagttaacaacttttctcattctctcaatttgcctaatttcatattcatgggcttacaaaagtactcatggtgactttgttgaatgtctttctcacaaaattatgaactcaacctcaatatcacaagtcattcacactcctaaaaactcatcatattcaaccatttataactcctttttagatcataacttaaggataacctccaacttcaaaccatcaattattttcactcctaccaaagaatctcaaatccaggtagctatatattgctccaagttacatgacctacaaattagaattcgaagcggtggacatgactatgagggactttcatatatttctgacaacccctttttcctgattgatcttagaaacctaagatcaatctccattgatataaaaaacaagactgcttgggttcaagctggcgcgactttaggggaagtttactatagaatcgcggaaaaaagtaacaataaattggcctttgttgctggggcttgccctagtgttggtgttggtggacacattagtggtggaggctatagcatgatgtcaagaaaatttggtattgctgctgataacatcattgatgcaaaattaattgatgctaatggacagattcaggatcgagaatcaatgggtgaggatctgttttgggctattagaggaggtggagggactagttttggtctcattatctcatggaaaataaaattagttgatattccagaaaaggtaaccgtgttcaatgtgggacgaacattgaaacaaaatgcaactcaactggtctacaaatggcaacatatcacggacaaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="27351" stop="25871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27051" g_stop="26171" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U574080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27051" e_stop="26171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATGTATGAATAAGCATAACAACTACTGCAACAACAAATAATCAATTATGAGTAAGTTAACAACTTTTCTCATTCTCTCAATTTGCCTAATTTCATATTCATGGGCTTACAAAAGTACTCATGGTGACTTTGTTGAATGTCTTTCTCACAAAATTATGAACTCAACCTCAATATCACAAGTCATTCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTTTTTAGATCATAACTTAAGGATAACCTCCAACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGTAGCTATATATTGCTCCAAGTTACATGACCTACAAATTAGAATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATATATTTCTGACAACCCCTTTTTCCTGATTGATCTTAGAAACCTAAGATCAATCTCCATTGATATAAAAAACAAGACTGCTTGGGTTCAAGCTGGCGCGACTTTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAACAATAAATTGGCCTTTGTTGCTGGGGCTTGCCCTAGTGTTGGTGTTGGTGGACACATTAGTGGTGGAGGCTATAGCATGATGTCAAGAAAATTTGGTATTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACAGATTCAGGATCGAGAATCAATGGGTGAGGATCTGTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAAATAAAATTAGTTGATATTCCAGAAAAGGTAACCGTGTTCAATGTGGGACGAACATTGAAACAAAATGCAACTCAACTGGTCTACAAATGGCAACATATCACGGACAAAGTTGAT</genome_strand>
        <mrna_strand>CTATATGTATGAATAAGCATAACAACTACTGCAACAACAAATAATCAATTATGAGTAAGTTAACAACTTTTCTCATTCTCTCAATTTGCCTAATTTCATATTCATGGGCTTACAAAAGTACTCATGGTGACTTTGTTGAATGTCTTTCTCACAAAATTATGAACTCAACCTCAATATCACAAGTCATTCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTTTTTAGATCATAACTTAAGGATAACCTCCAACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGTAGCTATATATTGCTCCAAGTTACATGACCTACAAATTAGAATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATATATTTCTGACAACCCCTTTTTCCTGATTGATCTTAGAAACCTAAGATCAATCTCCATTGATATAAAAAACAAGACTGCTTGGGTTCAAGCTGGCGCGACTTTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAACAATAAATTGGCCTTTGTTGCTGGGGCTTGCCCTAGTGTTGGTGTTGGTGGACACATTAGTGGTGGAGGCTATAGCATGATGTCAAGAAAATTTGGTATTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACAGATTCAGGATCGAGAATCAATGGGTGAGGATCTGTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAAATAAAATTAGTTGATATTCCAGAAAAGGTAACCGTGTTCAATGTGGGACGAACATTGAAACAAAATGCAACTCAACTGGTCTACAAATGGCAACATATCACGGACAAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601206" ref_strand="+" ref_description="SGN-U601206 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351635|emb|CAO42594.1| (e_value=3e-49) unnamed; (*ATH) AT1G30690.1 (e_value=2e-45)  Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylc... ; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=2e-44) Patellin-4 OS=Arabidopsis thaliana GN=PATL4; ">
      <seq>gcaaagaaccaaaagcaaattcgtatttgctcgccctgctaaggtcactgagaccttgctcaagtacatcccaatccatgaaattcctattcaatatggtggactcaagagggagaatgactttgagttttcagcctccgactgtgaagcttcggagattctccttaaagctggatcaactgaaactattgaaatacctgcagtagatgtggaaagtacatttatctgggatgttacgattgtgggcggagaagtgagctataaagaggaatttgttccagaggatgagacttcttacactataatcattcagaaggacaagaaggtgagctcgacaattcgcaacacattcaagaacactgaagcaggaaaggttgtgctgacaatcaagaacacttctagcaagaagaagaaggcgttttatcgacacaagatcaccaaatcaacaatttgagatgagcaagtttctattttgagtgaagatggagttctttttctctgtttttaagaatatgtataatgtagtaacctttttgtggtggttcatatacttgattatttttggtcctacattcatattgtatatgctgatttattcttttttctccctacaaggaagaatatgatctctctattttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="37752" stop="36335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37453" g_stop="37391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37390" i_stop="37304" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37303" g_stop="37159" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="208" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37158" i_stop="37070" i_length="89">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37069" g_stop="36635" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="643" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U601206" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37453" e_stop="37391"/>
          <exon e_start="37303" e_stop="37159"/>
          <exon e_start="37069" e_stop="36635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAAGTAAGTTTCAAACATAAATCCAGTATTTGTCTGTTTAACTTTACTGTCTAATGTGGTCTAAATGTTGAACTATTTGGCTTGAGTTAGGTACATTCCAATCCATGAAATCCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAATTGAAACTATTGAAATACCTGCAGTAGATGTAAGTATTAACTAACTTTGGATATATTGAGAGAGCTTTGATATTACGCGGAGATTTTGAATGTTTTGTGTTAAACTTTATTATGTCAGGTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAGGAGGAATTTGTGCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACGTTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACC</genome_strand>
        <mrna_strand>GCAAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAA.......................................................................................GTACATCCCAATCCATGAAATTCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAACTGAAACTATTGAAATACCTGCAGTAGAT.........................................................................................GTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAAGAGGAATTTGTTCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACATTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586475" ref_strand="+" ref_description="SGN-U586475 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147864826|emb|CAN83643.1| (e_value=6e-25) hypothetical; (*ATH) AT1G30690.1 (e_value=1e-17)  Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylc... ; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=8e-17) Patellin-4 OS=Arabidopsis thaliana GN=PATL4; ">
      <seq>gatttcacacaagcaaagcaacctcattcaactccaaaagctgtttaggggaggaggtgatttctaagatccaacacttgtgtaattgtgttatttatctaaaaacatgactgttgaggtgcaatgtgaggcaactcaagtggctgaagtagttgttccacaagaggaattagtggctgctaacaaggttgtagaggaggttgaggtgaatgagaaggtaaaagaagatgaagaagaggaatccaagcctaatacaattgagaaaagctcttcttatagagaagagagcaacttcctctctgatctcaaagagaatgagaagaaggcattgaatgagttgaaatctatagttgaggaggccattgttgggaacactctattcaaaaaagaagagaccaacaagtctctagaggaagagggaaagaatgaggaaaatcccgatgcgaatatagaggagaaggagggtgatttggatgttgttgaagtggatagagagatttctatttggggtgtacccattttgcctagcaaaggggatgagaaaaccaatgtggttctattgaaattcttgagagcaagggattacaaagtgaatgaaatcttcgaaatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="39403" stop="37689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39104" g_stop="39065" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38562" g_stop="37989" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="614" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U586475" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39104" e_stop="39065"/>
          <exon e_start="38562" e_stop="37989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAGGTGATTTTCTAATAACTCTTCCTTTTTTTTTTTTTTTTGAATATTTTATGTATACTATAGATGTTTTAGTTGATTGTGTTGTTGTTTCAGAGGTTTTAGTTTATTAAGGTTTATGGGAAACAATAAACAATATCTTTTAGGATTATACCGAGTATGCCGTTGTTGTTTGTAGAGATTTTTAGATTGACTAGATTCAGCTACATTGTCATTGAAAATCCATTATCTATATATCATCTTGAACAGAAAAGGTTGATTTTTCAGGGTTCTTAAGGGGAGAGTATTTCTTTTTCCACATTTTTAGATCTGTTGGATTGATTTTTGGTTTATTTTTATCATTTAGTGCTTGTAAGCTTTATTTTGAATTGAACCAAACACTTTAGTAAGCCAATTCAAAAAAGGCTCTAGTTTAACTTCATTGTTAATTTGAATTAAATCATGTTCTCTTTTGGCTATTTAGGGCACTGATTCAGGGACTCAAAATTTTGTTTTACTTGATTTTCAGCTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAATCTTTCGAAATGCTCA</genome_strand>
        <mrna_strand>GATTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTAGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAAATCTTCGAAATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604709" ref_strand="-" ref_description="SGN-U604709 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taatccacaaagtttttagtcttaagagatatgtttccaacatttcttgaccctctccaaaagactttatgcttctattacaggttggtacatgaaaggtttcattgtttacttggaatggaggttctttgtacatagcatatttaccatacaaggtaccttattataaatatgcttggaggaatgaaatgcaattggcttggccacaggtttgggagattagaatttgttataatgtatatttgatattttcatctactatttgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="41658" stop="40550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41358" g_stop="41331" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41330" i_stop="41221" i_length="110">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.580" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41220" g_stop="41173" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="76" r_length="48" r_score="0.875"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41172" i_stop="41043" i_length="130">
            <donor d_prob="0.963" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41042" g_stop="40850" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="269" r_length="193" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U604709" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604709" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41358" e_stop="41331"/>
          <exon e_start="41220" e_stop="41173"/>
          <exon e_start="41042" e_stop="40850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCACAAAGTTTTTAGTCTTAAGAGGTATGTGTTACAGATCCACAAAGTTTCCATTCTTTTTGCTCTTTACTTCTTTCCCCCCTTTGTTAAAAAAAATTCAAGATAACAACCAACTAAAGTTTTTTGATACACAGATATCTTTCCAACATTACTTGACCCTCTCCTCGAGACTTTATGCATCTGTAAGTAACATTACTCAAGATGAAAACGCGAAGCAATTTTTGTCAACACCTAGATTTTCCTTTTCAAAAGTTTCATATTCTCCTCTAGAAATCTTGGACTTGGATTTCTCAAAATAGTGTGCTTAAATAGGTGACAGGTTGGTTGATGAAATGTTTCATTGTTTACTTGGAATGAAGGTTCTTTGTACATAGCATATTTACCATACAAGGTACCTTATTATAAAGATGCTTGGAGGAATGAAATGCAATTGGCTTGGCCACAGGTTTGGGAGATTTGAATTTGTTATAATGTATATTTGATATTTTCATCTATTATTTGTTTC</genome_strand>
        <mrna_strand>TAATCCACAAAGTTTTTAGTCTTAAGAG..............................................................................................................ATATGTTTCCAACATTTCTTGACCCTCTCCAAAAGACTTTATGCTTCT..................................................................................................................................ATTACAGGTTGGTACATGAAAGGTTTCATTGTTTACTTGGAATGGAGGTTCTTTGTACATAGCATATTTACCATACAAGGTACCTTATTATAAATATGCTTGGAGGAATGAAATGCAATTGGCTTGGCCACAGGTTTGGGAGATTAGAATTTGTTATAATGTATATTTGATATTTTCATCTACTATTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576880" ref_strand="+" ref_description="SGN-U576880 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354178|emb|CAO46759.1| (e_value=3e-65) unnamed; (*ATH) AT1G30680.1 (e_value=3e-57) | Symbol: None | toprim domain-containing protein, contains Pfam profile: PF01751 toprim domain | chr1:10881579-10886407 FORWARD | Aliases: None; ">
      <seq>gaaatatgacaaggttcataagtctcactaacttggaaagcaagtaaaactcaagaaacatggagatcatgatcatcattgccttcacttatagacggaatggtatgctcatcggctgcaagtataggactcttgagaaaaggttttggcaggagaagggtgctgataaggtactatatggactggatgatgtaagagaagcagatgagatcatcattgtagaaggtgaaatagataagctttcagtggaagaagctggatttcctaactgtgtcagtgttcctaatggtgcaccacagggcatcgcatccaaagaactgctaccactggaagagacaggataccagattttcatacctgtggaactgcaatgagtgcttggagaaggcgtcccggattgtgctggcaactgatggtgatttaccaggccaagcattggctgaagagcttgcccgccgtctggggaaagaaaggtgttggcaagtatgttggccgaaaaagaatgagttaagcagttataaagatgcaaatgaggtacttgtaaatcttggaagagaagctctgaaagaagcgattgaatgtgccgtgccatatgaaatgcagaatttgaactaatccnacaagtttttagtcttaagagatatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="47611" stop="41022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47311" g_stop="47241" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47240" i_stop="47127" i_length="114">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47126" g_stop="47046" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="152" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47045" i_stop="45070" i_length="1976">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45069" g_stop="45004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="218" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45003" i_stop="44925" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44924" g_stop="44808" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="335" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44807" i_stop="44695" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.010" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44643" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="387" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44642" i_stop="44542" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44541" g_stop="44456" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44455" i_stop="42709" i_length="1747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42708" g_stop="42648" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="534" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42647" i_stop="41437" i_length="1211">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41436" g_stop="41331" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="640" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41330" i_stop="41221" i_length="110">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.580" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41220" g_stop="41212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="649" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U576880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47311" e_stop="47241"/>
          <exon e_start="47126" e_stop="47046"/>
          <exon e_start="45069" e_stop="45004"/>
          <exon e_start="44924" e_stop="44808"/>
          <exon e_start="44694" e_stop="44643"/>
          <exon e_start="44541" e_stop="44456"/>
          <exon e_start="42708" e_stop="42648"/>
          <exon e_start="41436" e_stop="41331"/>
          <exon e_start="41220" e_stop="41212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATGGTAGATAATCTTATCATTAACCTCATTTTGAAACTGGAAAGTAATATTTTATGGCTGCATCATGGGTAGAGTCGTAGAGATATAAATTACATGCCAATATTTGGGTGCTTGCAGATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAGGTAAATTTGTTCTTTAAGTTACAACCCTAACTGCATGCATGGAGTAATGGGGAAGTACGTGAAAACACAATATGCCATTACTGCTTAACTATATGCAATGCATGCTTCCAATTCTTAAGCTAAAGTTAGTCTTGCAAAAGTTTCTCGATGAGCAAATTCTTTAGCTTCAAATTCCTTTTAATAAAAAAGATATTGTGTCCTTGGCTGAAATTAATAGTTTAGTATTGTTGCTCCTAATAAGCACACACATGCAGTCGCGCAAGTAATATAGTTTATTAAGAAACGAGTTTTCGTTCCCATGGGACTTATGATCAACTTATATTTATTAACTTAATTCCACAATTCGACAAAAGTAACTTTTTAAAAGGGTGAATGTTGTTAATCACTACTACAACTAATGCAATAAATAAAATAACTAATGTGAACGACTTTAATTTGATGTTTTAAGCAAGTAAGAGACAATTCCAGGGCTGCAGCATGCATTGGATTTCATGTATCGTACCTCAGGTAGTGAACTAATTAGGTTATCAAGCTACTGATTTACATGGTTGATTTTATGATTATGGTCTTCCGACCTCTAATCGCCTACTTTAGCTGTCTAACTACATCGTTGAACGGAGATAGACAGTCCTAATTGGCGAGCATTTATTTTTCATCTTGTTTTATAACTAAGCTAGGTGTTCGTCCGAGCGTCACTCCTAAATACAAATCAATTCAACTTAATGGAAGATCAAACTTTCTATATTCTTTGGTCTATCTACCTTAGCCTCTCTCGATTTTAAGAGCAGACAAGAGATTTATCTCTATGATGGCCAATCAAGAAATACTAAAACAAGAATAAAAAGTAACTTAAAACGATAACGAAGAATTGATTCAAAAACCTTTAATACTCCACAATCATTCCGTAGCTACATCCCCTGAACAAGGGCGTTTAGCCACTCATAATGTTCAAAAACCGCAAAATAGAATTGTTTATGCGATTTCCAAAATAAAGAAGAGATAGAAAATCGAAACCTGTTAGAAAACTTGGATGTTGCTCTTGCACACCAAAAAGTAGTCGAACCCTAACAAATAGCCCTAGGGTCCTATTTATAGAAGTTAGGAAAAGTATTTTCTAAATCTAATCCGACAAGGAGTCCTATTCAAGTCAACTTTCGCTGGGCATGTCGAAAACGGGCTGGGGCACCGCGGCAGACAGTGCCTTCAGTCGTTCCAGCTGTGGCGCGCCGCGCCAAGTAGTGCGCCTGGAGTTGCTTCTGCAGTTCTAGCCTTGGCGCCTCGCGCCAGGCAGTGCGTCTGAGGAAGGTGTCGAGTGTTGGCCTTGGCGCTTTGCGACCAGGTAGTGCGCCTGAAAAGGTCGCCTGTGGTTCTGGCCTTGGCGCCTCGCACCAGGCAGTGCGCCACTCACTGCTGTTTCCTCCTTAGTTTATTTTAATGCTTCCTTGCTTCTCCTTCCCTCGAATAGACTCCATTTACCTTGAAAGTTCCTGCATCACCTAATCATGTGTTTTAGTGCACAATCATCGCAAGTTAAACAAAACAAAACTAATAGTCTCAAGATTATTCTTAAATTCACCCCAAAGTAGGCATTTATTGGCAAATTCGGCATATAAATATGCCTAAGATCAAGTATCTTACAACAAGAAGGGGATTGTTTGTCATGCTAATACATATGACACTTCACAATTATATTGTGGTAATATTTATCAAAATTTTTAAAAATTGGTTCCTACTTTATGGGTTTTGGGTTTGGGACTCTTTTGAATAACTTTAGCCTATCCTCTGGACAAATGTTTCTGAACAGTTTCTTTGTGATGTCAATTTAAGAGTTTTTTCAAGCTTCCAGTCAGTGTCTGCTGTTTTCACTGACATTGATTTTTCTGAAGGAAAATTTGATATAGTCTGAACAGAGAAGTTAGTATTTTTCCTTATTTTCCTCGTGCCTTTATTAATCAACTTCTACTTTCGATTGCCAGGAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATTGTAAGTTCCAAAACTTTTTCTTTCTCAGATATGTATTTCTGTCTGCTGATTAGATGTGATACTCTATTGCTGACCAAAGGTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAGGTGTGTCACAAGTATTTTGACATAATGTTACCATTGTGGTTTACCACTTATTTTAAAATTATTTGATATTTAGGATTATATTTCCAGCTTAATAGTTCTTCTTGCACCTGAAGACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAGGTTGGTCGTCTTGATGCATTAAACTGAGAACACTAAGCAAAAGATATGTTCCTAATGTCATTGCTCATTCCTTTTCTATTTTTTAATTTATATGTTTTCAGGCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAGGTTTTTTCCTTCTTCTCTTGTATGTTTATTTTGTGTTCCTTTCTTCGATGTCCCAAAATGTTGTCTACTTAAGTGGATGATTTCTCCATGCACTTCTTTTCAAGTTGCTGAACATTGTATTCAAGAAGTGGAAACTGCAAGAATTCTTGCAATTTCAAATCAATTGTAAATAAGTTTTCATATACTTTGGACTAGTGCCGGCAAAATGAGCCCATATTTTGGTAACCCGCCCATATTTTAATGGGTTGGGTGAGTGATTTTTTACATGAGTAAAAAATGGGTTGATACCCTTATTCAACCCATAAAATATGGGTAAAATATAGATTAGCCAAATGGGTTAAGCTTCTAACTTTTATTCACTCAAATTGATGATATCACTAAAAATATTGGAACTTCTCTTCCTTTTTATGTTCTTCTACAGAACTAATTATTTTTCTCTATAATTGAAAAGATGAAGTTCTTTGACCCTCCAAAAATATACATTTTAATTGTATATTTCTTTTGCTAATTATAATTGTATTTTTTTAAAATTTTATATTGGATATTAAAATAGTGTAAAAATAAGCAAATCATGTATTAGTATTGACATTGCTTAAAGCGCATTAAGCATGTTCTTAAAATGCATATATGCATTTACTTTGAAATTAAAAATATTTTCCTCTTGTTATTACATAAATTTATTTTATATCGAAAAGTTATAGGAATTTTGTTTTTTACTTTTGTAAGAACATTTTAAAAATATTTTCTCCATGTTGTATTCTTATGTAGAGTACTATTTACTCATGCAATATGGGTAAACTAGTATTTTGCCCAACCCATTTATTACCCAATCAATTTTTACCCATATCAAATATGGATGGGTTGAATTATTATCATTTTCTGTTGACCATTTTCAACCCGCCCAAATTTTACCCCCCTCCCCACACACACACACACACACTTGCCACCACTACTTTGGACTAACTTATCTCCATTTCTCCAATGCCTAGAAACATTTTTCATAGTCATACTTAGAGAAAGACTAACCCAAAAAACTTCTTTTGGTGGTTTGCAATTGCATGCATCTTTCTGTCAATGCAGCTAAATTACGCAAGGCATGCCTATTTTGTAATAACCATTGTCATCATTAAAGTTCATGGTTACAAATTTTAGATGAGAACTAAAAAAAAAAAGAAACCACTTGCTTGATGTAGCCGCTAAGTTGCTCTTCAAATTAGTCAAATGGCAACATAAGTCCTTGAAAAATTTGGGTTCTATTGACTTTTCATAACCCCAAACTTTTATCTTTTCTGTATTCTCTTAATCTTGGCTCTAAGAGAGTTCAAGAGATATAGAGAGACTTATATATTGATGTAGCAAGTGGAATACTAAATAAGAAAGGGTATTGCACCTTTTGGGAGGTGGAGTCAAATTTGCGTCGGGTAAGAATGCAGAATAATGTACATCTAAATGAATATACTGGATTGTTGTACCTTTTTATCACTAGTTAAGTGTATTTTGTGTTTTTGACAGTTGTGAGAAGACATGCCTTTTTTCTTTCTGTGCATGAGAATCACAGCCTTTCAGCATGCTCGGACCTAATATAATTTTCTCTGTCTGTTCATTGGTATTTATCTCAGTGGCTGCAATACACAGATGCTTCTACTTGTAACTCTCATTTGTTCAATCCATCATGCAATCCAAAGCCTTATTACTTCACCAACGGGTCAGAAAGTATTACAATTGGTTGACTTTGCTTGATTTGCAGGTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAGGTGAAAATCTTTTTATTTTCTTTTTCCTTTTAGGATGTTGCCGTCATATTTCTTTCTCTGTTATAACGATACATTTCTTGTGAGCAGTTTTCCTTCTTTCTTTCTTTACTTCTTTGTTTATAGAGGTGCTGCAGTAAATTTCAACTAGGGTCAAGAAGAATCAACTATGCGAAAGATTTGAACGTTTAGCTTATAATTATGATCTGTGGGTCGTGAGAACTACATTGTTAGAGATCACGGGATTGTGACTCATTTAATGTCAATCTACATGTTTTTCCATGAGTAAATAGTTTATTAGAATATCATTCCTAGGAACCAACCAATATACATCAATAATATACTGATGCATGATGTGCCTTTGCTGCTTAACCAACCACCATCCAGGTCAAACCATGGCTAATTTATCTCCTACCATTACTGTATCTATATTTGTGACCAAAGAAAGGTTTCTCATAAAGCTAAAGCTCAGAATTGATAGCATGCATGGTCATCAACTCAGGGCATGATCAGAGATTTAATTCTTTAGGTGATAGCTCAGGTATATAGGTTCGATTCCCATTACCAGTGGGCTAGTACTCAGGTTAGCCTTTTTTTGGTTTTAATCAAGAAGTTATCTGGCAGCCTTCTGAGTATTTGAGCATCAGAGTTAACTTTGACAACTAAAAGGAATTGAAAGGATATTAGAGGCGCTGATCATGTACTAAGAACATGCTTGCAGATCTTACTCATCTGGTAGATATATCAATGTATAGATAGAGATTAATCATTTTATAAGAAGAATTAAAAAAAAAAAAGCAGCAGGAAATGCAGTTGACATCCCCCTAAAACTATGTGGTCCTTTATTGTTCACTCTGTGGATGGCCTGCATTTGTCCAAGTCCAGTGTTTAGTTTATAAGGGATTTCATGTGCACCTTGGATATTCAATCAATGCTTCCGTTATTCAATCTGGTGCACATCAGGTAATTTTATGGCACTGTAATTAGAATGTTGGAGAAGTTCCCTGAAGTTTATATTACTGTATTTGTTACTATTATTTTTATGGGGTTTGCTTCTTTGTCCTGAATTGGTTTCTAAGTTTAGATATTGTTAAGGAACATGCTGTCAAATTTTTATTATGATGTTGGCAATCCACTGAAATCAAGACCTGTGCTATTCATTTGCTCATGCATATTGCAAATTAAATTTAAAGCCTTCTATAAAATTGTTGTAGGTACTTGTTAATCTGGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCACAAAGTTTTTAGTCTTAAGAGGTATGTGTTACAGATCCACAAAGTTTCCATTCTTTTTGCTCTTTACTTCTTTCCCCCCTTTGTTAAAAAAAATTCAAGATAACAACCAACTAAAGTTTTTTGATACACAGATATCTTTC</genome_strand>
        <mrna_strand>GAAATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATG..................................................................................................................ATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATT...............................................................................GTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAG.................................................................................................................ACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAG.....................................................................................................GCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTAAATCTTGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCNACAAGTTTTTAGTCTTAAGAG..............................................................................................................ATATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603804" ref_strand="+" ref_description="SGN-U603804 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354178|emb|CAO46759.1| (e_value=7e-17) unnamed; (*ATH) AT1G30680.1 (e_value=9e-13) | Symbol: None | toprim domain-containing protein, contains Pfam profile: PF01751 toprim domain | chr1:10881579-10886407 FORWARD | Aliases: None; ">
      <seq>acagctctcttaaaactcttgaaatgcttaatggcttggcgtcaactctctttagagctcgtcctgttatactctacactttcatctcaagattttcgcctaacagtcatggttttcttactattactcctactaggctcttcacacctgcagctagtttgaggagagatgaaaataaggaggtggatgattatgctgaactgaaggagaaagtggagaattttggtatatgctgcaattctgttactcctgaagaatacacaagattaatgtgtcccaagtgtaaaggtggtcggtcaatggaaaagagtttatcatttcatatgtcctcgaaaaggaattctgcattatggaggtgtttcaatattgactgtggatgggcaggccagatcccacacaatagtgcggcatctgatggggtccatcgacgtggcagaataaattttcctcggatacttacagaggaaagcttgaacttagaaccattagctggctgcatatttttctaagaggatgatatcaatgaatactttgaagagaaatcatgtcatgcaaatggctggtgatcaggtcagacaatattatggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="50783" stop="47609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50483" g_stop="50331" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50330" i_stop="49923" i_length="408">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49922" g_stop="49795" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="281" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49794" i_stop="49213" i_length="582">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49212" g_stop="49157" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="337" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49156" i_stop="49076" i_length="81">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49075" g_stop="49024" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="389" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49023" i_stop="48933" i_length="91">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48932" g_stop="48833" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48832" i_stop="48010" i_length="823">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48009" g_stop="47909" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="590" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U603804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50483" e_stop="50331"/>
          <exon e_start="49922" e_stop="49795"/>
          <exon e_start="49212" e_stop="49157"/>
          <exon e_start="49075" e_stop="49024"/>
          <exon e_start="48932" e_stop="48833"/>
          <exon e_start="48009" e_stop="47909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCTCTTAAAACTCTTGAAATGCTTAATGGCTTGGCGTCAACTCTCTTTAGAGCTCGTCCTGTTATACTCTACACTTTCATCTCAAGATTTTCGCCTAACAGTCATGGTTTTCTTACTATTACTCCTACTAGGCTCTTCACACCTGCAGGTTCGCTTCAATTCCTTTTTTTTTGTCTGAATTTTTCTTTACCTAATATATATTGTAATTATGAAGAGGAAAAGGCAAGACGGCGAATCAAATTTTAATAAAAAAGTAACCTGTTTCTTCTGGTGGGAGGTCGCAGTGAAATTAGTCGAGTTGCGCGAAAGCTGGCTGGATACCACGGTCATGAACAAAATTAATTTTGATACAAAATTTGGGTATTTGGGTGGAGGACATTTTTCATGCAGATATTTTACAATTTTCTTAAAAAAACTAGAGAGTGATTCCATGTTTTGAGTTCTTTACACTTGCAAATGTAAATAGCTTTGTAATTTTAAAAGAATTAGACCTTGTGATAATCTATAGATTCTTGAGTATCTATTTTGTTACTTTTTTTGTTTAAACTTTTACTAGCTAGTTTGAGGAGAGATGAAAATAAGGAGGTGGATGATTATGCTGAACTGAAGGAGAAAGTGGAGAATTTTGGTATATGCTGCAATTCTGTTACTCCTGAAGAATACACAAGATTAATGTGTCCCAAGGTATGTGACATTTTATTTGGTGTTTCTTTTGGTTTACTTAAGTTTTTCTTTTAATGAGTTTCAAGTGGTTGGTATCTTTGAATTACATATACTGATATCAACTAGTTGGAATTTGTACCTGCAAGCGCACACTAGGAAAGGAAATAATGAGAGTTTGGTCATTGTTCTCTTTTCATGGTCATGCATTTGTACTAATTTGATGAGGAAATGCAAGATGAAAAATAATGAGTTGCATATTTCAAGGTTGATATAGCTGTGTAAAGTGTAAATTTTCCGCTCTTTATAACAGAGACTAGGGTAAAGTAATATATAGCCTTCAATTATAACATAATTCTTTAAACTGTTTGTTTGTTCATATATGAGTAGACGAGTAAACACATTTAAGATGTGCTTCTTTGTTTTCCAATTATACAACATAACCTTAATTTTCTGCTAATTAACTCTTGTGACAAAAAAATAAGTTGGGGTTTGTCATGGACACTTGGATATGTTTATTTTGTTTTGTTAAGCTAGATATGAGCCCCATTCATTTTCTTTTCCTTCTCTCTATATCTTTGTATTTATTTGTCTCTTTTGAAACAGTGTAAAGGTGGTCGGTCAATGGAAAAGAGTTTATCATTTCATATGTCCTCGAAAAGGTATGATAGTTCTCATGTTCAATGATGATCTTCTTTTACAAGCAACTAGAGTTCTTCAAACTTGATTTTGTGGTCATCAAGGAATTCTGCATTATGGAGGTGTTTCAATATTGACTGTGGATGGGCAGGCCAGGTAGTTTAATTTATGGTTTTAAAATTTGTTTACTTTAATTTCTGAGAGATAGAAGTTAAATCACCTCATTGGATATTAATTATGAATACAGATCCCACACAATAGTGCGGCATCTGATGGGGTCCATCAACGTGGCAGAATAAATTTTCCTCGGATACTTACAGAGGAAAGCTTGAACTTAGAACCATTAGGTGATATGGTAAGGAAACTTTCTTTTGTCATGCATATACTAAATCTGATGGCCAGCATTGTATAGTCTAATATTTAGCACTGGGCAACAGATTTTCAACAATGCATTCCCTAATCTCTAAGCTAGTTTTAGAGGGTGTTTGGATTGACTTATTTTAAGTGATTTTGGCTTTTAAGATTGTTTTTTTTTTTTTTTTTGTGGTGCTTGGGAAAGATAAAAAGTGCTTTTAAGCACTTACTTTTAGGCCAAAAAAGTACAAATAATAAGCTAAAAGCTAAAAGTTGGTCATTCTTAACTTATGGCTTTTAGCTTATAAGCTACTTTTAAAGGCTAATCCAAACACCATCTTAGAGCAAGATGCCCCTTTCTTCTATTTTCATGAAGTAAATTTCATTAACAAAAGTACCGTCTTTTAAAAGGTAAGAAGCTCCTTACATACACTATGAGGAATCAATTATATTGTTGTTTTTGATTTTGCATATTACTCTACAAAGATAAGTTTTGCAAACATTTAAGTTGACATAATGGAGAGCATTGGTCTTCCCCTCAAAATTTAGGTTCGTTCCTTCTATACTGTCCAGGTTATGCATATTCGGGTAGTGCTTCCAAGGTGAATTCTTGATTCTCTCAAGCAGTTGATTGGGAATTCATGGTTCTTATGTTAGATTTGATAAATTCATTATTATGAGTGTAATTACATTTAGGCCTAATTAGAGCAATCAAATTTGTAGGGATTTTAACAAAGAAAAACTGATTCTGTAGCAATAAAATTATACAAGTCGCCCTTTTTTGTTTATTGCCTATGACTTTTGGGTGTATTACAGCTGGCTGCATATTTTTCTAAGAGGATGATATCAATGAATACTTTGAAGAGAAATCATGTCATGCAAATGGCTGGTGATCAGGTCAGACAATATTATGGTTT</genome_strand>
        <mrna_strand>ACAGCTCTCTTAAAACTCTTGAAATGCTTAATGGCTTGGCGTCAACTCTCTTTAGAGCTCGTCCTGTTATACTCTACACTTTCATCTCAAGATTTTCGCCTAACAGTCATGGTTTTCTTACTATTACTCCTACTAGGCTCTTCACACCTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTTTGAGGAGAGATGAAAATAAGGAGGTGGATGATTATGCTGAACTGAAGGAGAAAGTGGAGAATTTTGGTATATGCTGCAATTCTGTTACTCCTGAAGAATACACAAGATTAATGTGTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGGTGGTCGGTCAATGGAAAAGAGTTTATCATTTCATATGTCCTCGAAAAG.................................................................................GAATTCTGCATTATGGAGGTGTTTCAATATTGACTGTGGATGGGCAGGCCAG...........................................................................................ATCCCACACAATAGTGCGGCATCTGATGGGGTCCATCGACGTGGCAGAATAAATTTTCCTCGGATACTTACAGAGGAAAGCTTGAACTTAGAACCATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTGCATATTTTTCTAAGAGGATGATATCAATGAATACTTTGAAGAGAAATCATGTCATGCAAATGGCTGGTGATCAGGTCAGACAATATTATGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583577" ref_strand="+" ref_description="SGN-U583577 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147801779|emb|CAN61344.1| (e_value=6e-19) hypothetical; ">
      <seq>caggcaaaataaaaaccatatttgttgtacactaatgacataaactcaagtttgatacttttatcagttggtaaaaatgtaagcaagcaaagaagtagtgaaggccggaatgagatgtcatatgtagtatacaatctgatgacactacttgctaggtctccactacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttctgtgccagttgtagcatctccatccatgctattcttctttttctttccatcaccatgtctggaccttctaggggcttcatcctcgctctcgctttcatcatttctaaagctgttttcagtttgtggataatgtaccccttcatctggtccaacaactgagcctgcagtctcttgacccctaccttggtctggacctgaactgaatctatcgttcctttcattaaaaggagctcgctgatcctttttgacccgaggattttgagagggcggtggtgggggtggtgtaaatgatggatgcattcccattggtcgaccacctctgggtgggccaggtgctccaggacccattccacccatgaaagggggccttgctggacccatcatcatcccaaatccaccagcagccggaggacggctgtgaaacatcatatcaccagggaatcgagggccaaatggtccaaaaggtcggccacccattccataaggatcaggcataggaaaaccatcaggtgtcattgatccataagaaaatccatcactcataatgcctggggggaagccccgcatcccagggaaaggcctggctccacgaaagagaactagaggaggccattctcttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51057" stop="52548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51356" g_stop="52248" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-U583577" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51356" e_stop="52248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCAAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCCATACGATTCCC</genome_strand>
        <mrna_strand>CAGGCAAAATAAAAACCATATTTGTTGTACACTAATGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTTGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACCCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAGAGAACTAGAGGAGGCCATTCTCTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595456" ref_strand="+" ref_description="SGN-U595456 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350432|emb|CAO40412.1| (e_value=7e-67) unnamed; (*ATH) AT1G30460.1 (e_value=8e-67)  Symbol: None | similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:At4g11970.2); similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:At4g11970.1); similar to PREDICTED: similar to YTH domain containing 2, partial [Bos... ; (*SWP) sp|Q66KE3|CPSF4_XENTR (e_value=4e-20) Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4; ">
      <seq>gaaacaaccaaaagccctgcccctgggttaggacttgaaaaaccttggtggctccataaaccccaaattcaaccagaaatcaagattgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttatatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggacctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctctacatcaggggccccccactcaaacacaaacccttcccggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66107" stop="63874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65808" g_stop="65313" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64505" g_stop="64174" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="828" r_length="332" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U595456" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65808" e_stop="65313"/>
          <exon e_start="64505" e_stop="64174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCA</genome_strand>
        <mrna_strand>GAAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTATATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGACCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCTACATCAGGGGCCCCCCACTCAAACACAAACCCTTCCCGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586189" ref_strand="+" ref_description="SGN-U586189 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350432|emb|CAO40412.1| (e_value=2e-68) unnamed; (*ATH) AT1G30460.1 (e_value=6e-68)  Symbol: None | similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:At4g11970.2); similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:At4g11970.1); similar to PREDICTED: similar to YTH domain containing 2, partial [Bos... ; (*SWP) sp|Q66KE3|CPSF4_XENTR (e_value=3e-20) Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4; ">
      <seq>acactaacananaanaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66013" stop="63929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65713" g_stop="65313" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64505" g_stop="64229" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="678" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U586189" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65713" e_stop="65313"/>
          <exon e_start="64505" e_stop="64229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAA</genome_strand>
        <mrna_strand>ACACTAACANANAANAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584879" ref_strand="+" ref_description="SGN-U584879 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157350431|emb|CAO40411.1| (e_value=5e-75) unnamed; (*ATH) AT2G34690.1 (e_value=8e-73) | Symbol: None | expressed protein | chr2:14637430-14639029 FORWARD | Aliases: T29F13.10, T29F13_10; ">
      <seq>gatcaaaatcactgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggaccggcattaccacgaaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73118" stop="67462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72819" g_stop="72476" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="517" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68833" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="663" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68097" g_stop="67761" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="1000" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U584879" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1000</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72819" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68833"/>
          <exon e_start="68097" e_stop="67761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGA</genome_strand>
        <mrna_strand>GATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598523" ref_strand="+" ref_description="SGN-U598523 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaaggaacaaaaatggtttaggtagttgctgaacttcttttttgctatcttcttcaccagatctaggctttaactagataattgttcttgaagaattggttgcaaatggatgactcagttttaaaatccaatgaagactcagtggaggagaaccaaagtccagagataatagagaagccttctccgctgcaggattgggttgaacatccacaaagttcagagtcactaaagcaatcatcagcagagagtgtgaaaaaatcaaggacagtgagaccaagtttaacaactcaaaatggggcaacaaatgctgggactgtgaagaagcgaactggaataccagatggcactgattttactctcagaggtgtcaagtcatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="83143" stop="84727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83443" g_stop="83520" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83521" i_stop="84123" i_length="603">
            <donor d_prob="0.414" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84124" g_stop="84427" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="382" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-U598523" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83443" e_stop="83520"/>
          <exon e_start="84124" e_stop="84427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAACAAAAATGGTTTAGGTAGTTGTTGAACTTCTTTTTTGCTATCTTCTTCACCAGATCTAGGCTTTAACTAGGTGCGTGTGGAAACCCAACTGTTTTCTTGGTCTTGTGGTGTTGGAATGGTGGAAAAAGTTTCTGATTTTTTTTTGCTCTAATGAAGCTGCATTCTTGACTTTCTTGTATTTTTGAGTGGGGTTGTTTTGGAGTATGGGAAAAGGTGCTATTTGGTTAAATGAAGCTGCATTATTGGTTTTTTTTTATTTTATTTTTTTTTTGGTTTGTTGTGAATTTTAGCTGCAAAGAAGCTGCTGTTTGGTTCATTTCAGTGGTGGGGTTTTGCTGAATTGTTCTGGAAATTGGAAAAGAAGTTCTTGAATTTTAGGCTGAAAAGCTGCATTCTTGCCTTTTTTGTTTCTCTGTTCTGAGTAGTGATTTACGGCTGGGTTTTAAGGGAATGTGACAGAAAGTGCTTGAATTTCAGCTAAAGAACAGCACTTTTGTGTTAGATTAGAGAATTGAGACTTTTTGATTCTATAATTTTTACTGTGCTTTCTTTGAATGTCGGTGCTGCTCTGCATAGTGCTTTGCCAGTACTTCTCTTTTCCACAAAGATGACGTCTTCTGTGCTAATTTAGCTTGCTTTATTTGTTTTGATCTTGACAATTTTAATTGGACAGATAATTGTTCTTGAAGAATTGGTTGCAAATGGATGACTCAGTTTTAAAATCCAATGAAGACTCAGTGGAGGAGAACCAAAGTCCAGAGATAATAGAGAAGCCATCTCCGCTGCAGGATTTGGTTGAACATCCACAAAGTTCAGAGTCACTAAAGCAATCATCAGCAGAGAGTGTGAAAAAATCAAGGACAGTGAGACCAAGTTTAACAACTCAAAATGGGGCAACAAATGCTGGGACTGTGAAGAAGCGAACTGGAATACCAGATGGCACTGATTTTACTCTCAGAGGTGTCAAGTCATCTCTG</genome_strand>
        <mrna_strand>AAAAGGAACAAAAATGGTTTAGGTAGTTGCTGAACTTCTTTTTTGCTATCTTCTTCACCAGATCTAGGCTTTAACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGTTCTTGAAGAATTGGTTGCAAATGGATGACTCAGTTTTAAAATCCAATGAAGACTCAGTGGAGGAGAACCAAAGTCCAGAGATAATAGAGAAGCCTTCTCCGCTGCAGGATTGGGTTGAACATCCACAAAGTTCAGAGTCACTAAAGCAATCATCAGCAGAGAGTGTGAAAAAATCAAGGACAGTGAGACCAAGTTTAACAACTCAAAATGGGGCAACAAATGCTGGGACTGTGAAGAAGCGAACTGGAATACCAGATGGCACTGATTTTACTCTCAGAGGTGTCAAGTCATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565721" ref_strand="-" ref_description="SGN-U565721 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|110737897|dbj|BAF00886.1| (e_value=2e-35) auxin-induced; (*ATH) AT2G34680.1 (e_value=1e-37)  Symbol: None | similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:At1g78230.1); similar to putative leucine rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:XP_476635.1); contains InterPro domain Leucine-rich ... ; ">
      <seq>gtccaaaattgcaaaggcgttccgcatacctttaggagctgttggttactatattgttgcaaaatttactccgatgactccagatggcgaagctggtgaaccagtctttgtcatttctgaaagagctgcagagactcttccacctaaccttaactttttatctctgactggggattacgctgaaggtggaataatgaccgcatcttatggttatattggggcgtcatgagggaaaaacgtatttacacacttggtatgcttcacgaggttgaaaatggacttaggtgctatgcatacccgcagttttctggtcttcttcaatatcgtattgccaaagatgcaattggtaaattcattctttcaaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="94652" stop="96625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94817" g_stop="94832" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94833" i_stop="94960" i_length="128">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94961" g_stop="95078" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="134" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95079" i_stop="95167" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95168" g_stop="95295" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="267" r_length="133" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95296" i_stop="96225" i_length="930">
            <donor d_prob="0.856" d_score="0.78"/>
            <acceptor a_prob="0.989" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96226" g_stop="96325" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-U565721" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565721" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94817" e_stop="94832"/>
          <exon e_start="94961" e_stop="95078"/>
          <exon e_start="95168" e_stop="95295"/>
          <exon e_start="96226" e_stop="96325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAAATTGCAAAGGTAATAGATATTAAGTTAAGGTTTTAAATATCAGTCCTGCGTGTGATGCATCAATGATGCATCAAATCAATAACCATTGCTTAGTCATAAAATGATGTTTGGAATCAGTATATGTCTGTTTACTACAGGCGTTCCGCATACCTTTAGGAGCTGTTGGTTACTATATTGTTGCAAAATTTACTCCGATGACTCCAGATGGCGAAGCTGGTGAACCAGTCTTTGTCATTTCTGAAAGAGCTGCAGAGAGTAAGTATAATACATTTAAATTTCATCTGTTACTTTGTGCATTTGTTCTTAACTTTGAGTAATCAATCAACATGGATGCTTTTTTGCAGCTCTTCCACCTAACCTTAACTTTTTATCTCTGACTGGGGATTACGCTGAAGGTGGAATAATGACCGCATCTTATGGTTATATTGGGG-GTCATGAGGGAAAAA-GTATTTACA-A-TTGGTAT-CTTCACGAGGTAGAATGCTGTGTTTTTGTCTCAACATGATTGTAGGCTCTGTATTATCTAGACTCTTTTCAGAATCCTATCCGGACTGCAGAGAGAAAAATAACTGATCATGTTTATACCTACTCTCTTGGATTGATATGTTATTAGACACCAAATGATGGATGGTGCTGATCTGAGAATAAGTGAAAATATTCTCTGAAGCAGAGTATCCCTTAGTTCAAATGAATTTTAAATTAGATGCTTCAGGATTTCATCAAATTCAAGTAACAAATGAGGAAGTAAATCTTGGATAATCGTTTATCTATGGCAGTAGTGATTAACTTTGTCTAAACATGGGATGATTCTCAACTTCCATAAAGAAACAGAATGAAAAAAAAACAAGAAATAAAAGGGAAGAAACATTAAAACTGATTAATCATACGAGGGATGCATAACACTGAGAATGTAAAGTAAAAGCACAGGGATTCTATTGTTGTTTTGGATACAAGTACAACTGATGCAAAGTCTATTTGAGTCGTGTCTTATGAAAGCATATGCTCCACAATTTATGCTGCTGTAATGAAAATATACCTGTTATGAAGAAAGTACCATTTTTGTTTTCTATATTTGAAGAACTCTTGATACATAGTTACATTACATGGGTTATCATTACGTCTTAATTACTGAAACTGTACATGTGTCATGGACTACTTCGTTGGTTTTTGTACAAATCAAAAGCTAGAGCAAAGAGATTGTCTTTGTGAATACCGTGTGCTCATCCATGCTTATCGTAGTTTCTGAATGTTTAAGGTAGTTATGGCCTTATGGGGATAACAGCGTAACTGGCTAGCTAACTGTTCTTAGATTGCATGATATTTTATGTCAACATTTTCATTAACTTAATATAACATTCTTTTGTTGCTGTTTTTAGCTATCATTGATCGGCTCTTCTTACTGCAGGTTGAAAATGG-CTTAGGTGCTATG-ATACCCG-AGTTTTCTGGTCTTCTTCAATATCGTATTGCCAAAGATGCAATTGGTAAATTCATATCTTTCAAATGTA</genome_strand>
        <mrna_strand>GTCCAAAATTGCAAAG................................................................................................................................GCGTTCCGCATACCTTTAGGAGCTGTTGGTTACTATATTGTTGCAAAATTTACTCCGATGACTCCAGATGGCGAAGCTGGTGAACCAGTCTTTGTCATTTCTGAAAGAGCTGCAGAGA.........................................................................................CTCTTCCACCTAACCTTAACTTTTTATCTCTGACTGGGGATTACGCTGAAGGTGGAATAATGACCGCATCTTATGGTTATATTGGGGCGTCATGAGGGAAAAACGTATTTACACACTTGGTATGCTTCACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAATGGACTTAGGTGCTATGCATACCCGCAGTTTTCTGGTCTTCTTCAATATCGTATTGCCAAAGATGCAATTGGTAAATTCAT-TCTTTCAAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599812" ref_strand="+" ref_description="SGN-U599812 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350430|emb|CAO40410.1| (e_value=2e-73) unnamed; (*ATH) AT2G34680.1 (e_value=1e-60)  Symbol: None | similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:At1g78230.1); similar to putative leucine rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:XP_476635.1); contains InterPro domain Leucine-rich ... ; ">
      <seq>gccaagattgctttctctacgaatagccggaactgcagttgaaggcaccacattaagaattgagaagaaatactggggtggtgaagagggaaattcaatttaccgctggttccggactagttcaagtggaacaaacatagaagtcaatgatgagatgacatcctcgtacaagctgtctattcatgatataggatattttatatctgtatcctgtgaacctgttcgaaatgattgggctcgtggtcctatagttatctcggaacaagttggacctattgttccagggccaccgacttgccattcgcttgaatttcaaggatctttggttgaaggagaacgtgtgagctttgttgcttcttatagtggaggggagaagggagaatgcatacacgaatggtttagagtgaatcatgatggtggcaaagacaaaataagctgtgatgagtttctggatttgactcttgaggatgtcagtaattgtatagagcttatttatactcccatccgcaaagatacattaaaaggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="96815" stop="98409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97114" g_stop="97228" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97229" i_stop="97304" i_length="76">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97305" g_stop="97473" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="284" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97474" i_stop="97702" i_length="229">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97703" g_stop="97787" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="369" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97788" i_stop="97876" i_length="89">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97877" g_stop="97950" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="443" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97951" i_stop="98022" i_length="72">
            <donor d_prob="0.277" d_score="1.00"/>
            <acceptor a_prob="0.129" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98023" g_stop="98109" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="530" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-U599812" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97114" e_stop="97228"/>
          <exon e_start="97305" e_stop="97473"/>
          <exon e_start="97703" e_stop="97787"/>
          <exon e_start="97877" e_stop="97950"/>
          <exon e_start="98023" e_stop="98109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGGGTATTTAAATGCGCTTTTAAATGCTTAATCCTCTTTACAAGCAAATAAGCTGACTAGTATGAATGTTACTGTGCAGACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAGGTATTACCAAATGAATCTCTGCATATGAATAGGTCAACATGAATTATTATCAGTTTTCAACTTCTGAATTGGTTGCTTGGAAGTTAATAAGATTACTTTCTTTTTTTCATATAACAAGATTACTCAGTTTGCTAGTTATTTAGGACAGACATGCAACCACTGATTGCCTTATTTTTTAAGTTCAAAATGATACTTAGATATGAGTTATATCTAAAACCCTTTACTACAGGGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGGGTACAGATACATCTTAAAATTATCCATCTTGAACTTGAGTCTCTGAATTCGTTTTGGTTTGTTCTGAAGTTAAAAGTGTTCATGCGCAGGGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATGGTAGGGACATATATTGTCATAGTTTATTATAACGGTGCAAAAACTTGTCGAGTAAATCAGTTTTGTTGGCAGAGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCT</genome_strand>
        <mrna_strand>GCCAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATACTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG............................................................................ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCGTACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATTGTTCCAG.....................................................................................................................................................................................................................................GGCCACCGACTTGCCATTCGCTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG.........................................................................................GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG........................................................................AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602235" ref_strand="+" ref_description="SGN-U602235 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30685317|ref|NP_193844.2| (e_value=1e-37) amino acid transport protein AAT1 [Arabidopsis thaliana]; (*ATH) AT4G21120.1 (e_value=1e-39) | Symbol: None | amino acid permease family protein, similar to cationic amino acid transporter-1 (Rattus norvegicus) GI:1589917; contains Pfam profile PF00324: Amino acid permease | chr4:11270056-11273982 FORWARD | Aliases: F7J7.60, F7J7_60; ">
      <seq>ggttactatgtgagtggtgtgaccacaaacacaaaccgcaacaagctaattatatgcatattgctcatcctcgggtcctcaatcgccacagctgcttactggggacttagtgagaaaggatggattggatactgcttcactgtgcctatttgggtttcagcaactgcagggatttgtattttcattcctcaggctcgtaatcctaagctttggggtgtgcctcttgtgccttggttgccatcattatcgatagctatcaacattttcctactaggctcgatagataaagattcgttcatcagatttgctggctggacaggttttcttttggcgtattacttctttttcgggctgcatgcttcttatgacacagcaaaggaatttgaaaagagcaaagggtggaagaacaatattgaagaaggaaagggtacttctaatgtggttgttagcaaagatgttcctattgctcctggtaactgaattagttgtgtctaaatgatagcacaatgttacgttcctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="117429" stop="116308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117130" g_stop="116608" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U602235" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117130" e_stop="116608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</genome_strand>
        <mrna_strand>GGTTACTATGTGAGTGGTGTGACCACAAACACAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAATATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568882" ref_strand="+" ref_description="SGN-U568882 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30685317|ref|NP_193844.2| (e_value=5e-53) amino acid transport protein AAT1 [Arabidopsis thaliana]; (*ATH) AT4G21120.1 (e_value=4e-55) | Symbol: None | amino acid permease family protein, similar to cationic amino acid transporter-1 (Rattus norvegicus) GI:1589917; contains Pfam profile PF00324: Amino acid permease | chr4:11270056-11273982 FORWARD | Aliases: F7J7.60, F7J7_60; (*SWP) sp|P30825|CTR1_HUMAN (e_value=5e-18) High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1; ">
      <seq>tctgcttcatcatctgcatcattgccattcgtagtacgaaaggctcttctcgtctcaactatgttgcctcgatcattcacattgtggtgattgttttcatcatcatctgtggtctaatcaaggcagataccaagaactacaccccctttacgccatttggagttcgtggcattttcaaagcttctgcggtgttattctttgcttatgttggctttgatgctgtttcgactatggctgaggaaactaaggatccagctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgcttattggctataacactgtgtcttatgcagccttatcagagcattgatcctaatgctccgttttctgtggcgttcaaagctgatggatggagttgggcgcaatatattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="118203" stop="117179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117903" g_stop="117479" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U568882" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117903" e_stop="117479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTA</genome_strand>
        <mrna_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGTCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTATTCTTTGCTTATGTTGGCTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGCTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCTGATGGATGGAGTTGGGCGCAATATATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568883" ref_strand="+" ref_description="SGN-U568883 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157350427|emb|CAO40407.1| (e_value=6e-82) unnamed; (*ATH) AT4G21120.1 (e_value=5e-83) | Symbol: None | amino acid permease family protein, similar to cationic amino acid transporter-1 (Rattus norvegicus) GI:1589917; contains Pfam profile PF00324: Amino acid permease | chr4:11270056-11273982 FORWARD | Aliases: F7J7.60, F7J7_60; (*SWP) sp|O43246|CTR4_HUMAN (e_value=1e-24) Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4; ">
      <seq>ggtaatcaatcaccagaaagtgaaagaacatggggatagaaggtgaagtaccggaatcaggaggaggaatcaggcgaagaaattgtgtgtgcacaaaagacgattttctgccggaggaatcgttcaagagctggggaaattacacgaatgcgctgaggcaaactccgacgaggttaatcgaacgggcgttgacgcgatcgaatgatgaagcagagctggaggcgaagtcacggagtcaccatgaaatgaagaagacattgacatggtgggacctaatatggtttgggatgggagcggtgattggagcaggaatcttcgtactgacggggcttgaagcgagccaggacgctggccctgctgttgtactgtcatatgcagtttccggcgtctccgccttgctctctgtcttctgttacactgagtttgccgttgagatccctgttgcaggtggttcatttgcctacttgagggtggagcttggtgactttgtggccttcattgctgctggaaacatccttcttgaatatgtgattggtggtgctgcagtggctcgttcatggacctcatactttgcaactttgttgaacttcaagcctgaaaaattcctcatcacggctcatggtttagctaagggnctacaaccaacttgacccaatcgctgttgcggtctgcttcatcatctgcatcattgncattcgtantacgaaangntcttctcgtctcnactatgttgcctcgatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="121990" stop="117526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121690" g_stop="121675" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121674" i_stop="121185" i_length="490">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121184" g_stop="120754" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="447" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120753" i_stop="118123" i_length="2631">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118122" g_stop="117826" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="745" r_length="298" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U568883" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121690" e_stop="121675"/>
          <exon e_start="121184" e_stop="120754"/>
          <exon e_start="118122" e_stop="117826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATCAATCACCAGGTATACATTTCATCTTCCTTTTATTCTCTGTTTTTCAATTATTCAGTGAAACCAATTAGGTACTTTTGTTTTGTTTTGCATATTTTGGGATCTGAGATATGATTTTCCCCCCCTTGTTTTATGAGTTATGAAGTAAGTTAAAATTATTTCTCATAGCGAAGTCTTCCTCAATTTACTCAGATTTTCTCGGGAAAACATCTTATTCTGTTTCTTTAATCACATATCTCGGATTTTTCGTCTCTGAATACAGAGAAGTCTTTGTTAGGGATCTAGGAATACCAAACACTATCCGTGTATTTGGCAGAATTCTGTTAAAAATCTACCTAATACGTATAAATAATTTATCGAAAAAATTAATTGAACTGTTTTCTTTTTGTTAGAATCTAGAACTCATAAATTCAAAATTGTGGATTGTTACGGTTTGTAATGTAATCCGTTTTTTTTTATGTAGTACTGCTAATTAGTTTTTGTAATATTCAAAATCATGCAGAAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAGGTATGTTTTGAAATCTCGATTAATTTGACTTTGTCTAAACCCTTTTCTTTCAAATTCAGTTGCTTTGAACCTTTGATTAATTTAAATTCATGTCATGTAAGATTAAAAAATATTTTCTCGCTTTATCCTCAAAACATGAAACTTCGAGAAAGTTGATTTCGTGATCAAATTACCTTCGGATAAGAATTTTCCACTTATGGGATAGTAACTTAGAGAATAAGGCACGATTATGTAATAAATTTTACACATATTATTTTCTTAAAATCACTTTTCATAAGCAGGTAAATTGTTATCAAGATAAAAGTTAATTTTTCTATAAGAAACTGTACAAGGAGTTTTGATTTTAAGTTGATATTTATTACGACGAAAAGTTATTATTATGACGAAAAGTTAAATTTTGTGAATATTATGCAAAGTTCTCCGTTGGACTTACGGGACTTGAAAGATAGTGACAACTGTTTGATTAATAAGGGCATTATACGTTTATAACATAATTTTTTATTATTATTTTTGCCTGTATTTGTGTGTTTCTTCTTCTACTTAGCCAGGATGGTATTAATATAAAAGAAAGTTTGGATTAAGAGTGATTCGTCGTTGTATAAATGAAAATAATACTGTAGTAAATTAACAGCTAGGTAGTGTACACATGCATTTGTCAATAATTTGCCTTTCATATTTAAAAATGTTTGAAGTTTATTATTTAGTTGACGGAGTTGAAACAGTGGATCCTAATAAGTAGGAGTAAATAATTAATAAAATGTCTACATCTCTTAATTAAATTATCCCACGCCCAGTCGCTCTCTGCAGGCCACCATGTTGCTGATACTTAGGGATCGGTTGGATTGGTTTGAGGGATAAGAGTATATAGTTATGGAATTTTTTTTTATCTAGGATAAAATTATAGTGTCTTGTTTGATTATTATATTGGGATAACGTATTCCATCATTTATATTATTGGAGTGTGATAAACTATTTAATACACATGATAGATAAATTATCCCAAAGTAGCTAATTTTAAATTAATTAATCTAAAAATAATTAATTTCCAACCAAACAATTAGTGAATTGTAGCTAAGGCATTAACTTAATAGGGGTATGTTGTTACGAAGCTATTAAGTTTGGATATTTCTTCCTTTTCCAAATGAAGTGGACACATTTGGTGTAATGGGTTAAAGGAGATAATCCTAAGATAAAATTTTAGTACCCAAAAATCATAATATGTTCTTTTTTTTATAACATTTGAAATATTGATGCTGATATTTAATACCCTATTATAACTTATGTTCAAATCAATCACTATAGCGGTGTGAGTTGTGTACAGCCCAATATGAAAATGTAATGAACCAAAAGTTGTGGGATTGTCGTGAAATTGTGATTTTCCTTTTCTAAAGTCAGCGCCAGCAAAATAGAAATTTGAGTCACTCTGCAGTCCCCACTAAGCAGTTATGGCAGTGGGTACTGGGGCCAGGGTTGAAGATTCAACGTTCCAGGTTGGAAAAACAAGGCTAACGTAATATTTTCGGCTGCATTTTTGGACTTTTAGGATCTCTAGTTACATTTTAGAATTGTTCTTTAGAATTAAATTAGTTTGATATTTTCAAATTTAAAATCTAAATATCCATAAAGTTATAATTATTCTCATATATTAATTCAGGAAAAAGATACATTTTTGCAATGCAATAACGTCATTTTACAATTAGGTCAGAGTTCATATAGATTTTCGTTAATTTTTCTCCTTTTTGTGGGACGACCATAGGATAAAACTGTGGAATATTGTTTACTTTGGTAAGCATGAGATTGAAATTTTGAAGCATTTGCTTTATTGGTAAAAACACATCATGTAATTTGCTTTAGTGGTAAAACACATCATGTTGAGTAAATTAGGTGCATGTCACAAATTAAAACGTATACGAAAACTTCATATTTAAGTAGAAAAAGATAGAGATGTGGATCAGTTATTATCTTCTAATTTAAGTAGTAAAAGATAGAGATTTGGATCAGTTATTATCTTTCTAATTTAAGTAGAAAAGATAGAAATGTGAATCAGTTAATATCTTCTAGTATAAAATCCTATACTGTTAGACCGCTTGAATTTTTTTACCCTTTTGGCACATTTATATTCCCAGTGCACACGCCCATTCAATATCAATTTTGTTTTTTTGGTATAATTTAATCTGTAATTTGTAAATTTACTATTGTCTGAATTATTTCGAACTAATTGTAAAATGTAGATACTACATTATGATCGACAAAATAAATCATTTTGTACTATATTTCATTGTTTTATCACTGGCAATCATTCAATACGTCTTATTAATATTGTATAATCTCATCTACTCTGTTCATTAAAACATTGGCTAACATGCATGCTTATTATAACTACATGAACAGTTAGGGTTTTAAAATGAAGCATTGATCAGATCAACTCGTTGAATATGCTCGATAAGTTGAAATTATAATCAGCAACTGCAAATTAATGTTTGTTTAAGTGTATGTGTCTATGTATTTGGAAAAGCTTAAACTTTTAAAATACGTATACATCACACTTTTATTTACTTAATTATAATTTCATCAATGTTGATGTAGTTTTTATTAAGGAGTATGTACTAAGTTTTAAAATGATTATTTTAGGTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACTTCAAGCCTGAAAAATTCCTCATCACGGCTCATGGTTTAGCTAAGGG-CTACAACCAACTTGACCCAATCGCTGTTGCGGTCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTC</genome_strand>
        <mrna_strand>GGTAATCAATCACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACTTCAAGCCTGAAAAATTCCTCATCACGGCTCATGGTTTAGCTAAGGGNCTACAACCAACTTGACCCAATCGCTGTTGCGGTCTGCTTCATCATCTGCATCATTGNCATTCGTANTACGAAANGNTCTTCTCGTCTCNACTATGTTGCCTCGATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574690" ref_strand="+" ref_description="SGN-U574690 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=9e-43) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=3e-22)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; ">
      <seq>gctgaatcgcagcttaaaaaccccttttctcgcggttaacactttccggtttgggtagttcagacttgactgctttgaattcgggaggcaatggaaggtggagaagagattgagattgcggaggaaaatgagttcccttcagttattggacgaaaatacagtccagtggtggcgcatgacaatgatagtgcagttattgagatgtcttctgttcgtcccggatcttcctcttctctccccaaccacgatctcaagaacgtcaaagtaggtgtccatccaaatatggcatctgaagaaagagacgagtcattatccaatcatagtagcaatggtcctcaaagagaatccaaactggaattatttggctttgattctctagtaaatattctaggtctcaagagtatgacaggggatcaaattcccgcaccgtctagtccaagagatggtgaggatataactctcacgcttgagcaacctaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="140802" stop="124028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140503" g_stop="140250" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140249" i_stop="138295" i_length="1955">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138294" g_stop="138148" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="401" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138147" i_stop="136113" i_length="2035">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136112" g_stop="136034" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="480" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136033" i_stop="124679" i_length="11355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124678" g_stop="124327" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="832" r_length="352" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U574690" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140503" e_stop="140250"/>
          <exon e_start="138294" e_stop="138148"/>
          <exon e_start="136112" e_stop="136034"/>
          <exon e_start="124678" e_stop="124327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAAGTATTTTCTCTTTCTCTATGTTTTCTCGTTTTGACTAGTATTGACTAGTAGTGTACTAATAGCTCTGGGATTTGATGGCACTGAATTATGAAATTTTTTACTTTGTTTTTTTTAAGCATTTAAGAATTTGAGAACAATTAATAGAGACCGTAAGTATTGATGTTAAATTTATGTCTGAGCTTACTTCTAAGTGTGGATTTGGGTCAACATTTCTTCCATTTATCATGTCTATTGTTTTCCACTTTGGTTGTTAGTTAGGTATGAAAGAAATTGTTTTTCATGAAAATATTTTCTAAGAAAATGAGTTTTTTTTTTTGGTATTATATACAGCAAAAAGTATTATCTTGAAAGTGTTTTAATCTAGACAAATACTATATGGAGTTGGGGGTGGAGAGTGATGGATGGGGATGGGAGCTATGGGGAAGGGGTGAAGATGAGGTGAGTTGGAAGCTGAGAAGGAAACAATCTTGTGAAACTTGTTTTTCCTACTTTTATTGGGGAAGTCATTTTCCTTCTTTGTTTTTTCTTTTATAAAGAAAATGTTTTCAAAAATACTAACGAACCAAACATAGGAAAATTGGAAAATATTTTCGTCTGTACCGAGCACATCCTCAATGTACATAGTTTGTCTTTGCCATGGTTTGGACATTGTTTTGTAGGTAAATGGGTCAGTGGAAATACTACTGAAATCTATGGTTAGGCTTTCATATTAGTATAATTACTTGAATGTTGTGGAACTATTTTCTCATCCATCCTCTCACTTATGTTTTGAAACTTCAAGGGCATAAAAGATTAACAATTTGACTCAAAGTCAATTCTCCTAATAAACTTTGATGAATTTGAAATATTAAGTATCTCTATTTAAATGTTGAGTATGTTAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAGATTTTTTTTATTTTGAAATTGGCAACATGTTATATTCATCAACACCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAATATTCATCAACATCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACATACAAAGAGGCCAAGAAGTCTAGTAATGATTCTGCATCATCTACTAGCTGTTCTTAACACCAAAAATAAAAAAGAGAAATGCAGGAACTCCTGGTCTTCTGTATTGAACTGCTCTTGCTCTCGAAACATTTTGCATTCCTTTATTTCCAAATTGTACACCATATGCAAAGAGTATTGGCTCAATTGGAAATAGTGACATTCATCTATCAGTTATTTATCAACTAAATATACTAGTTCGGATTTGCTTCATTTGTGCGTTGTGAAGTAGATGCTGGTTCTCTCTGGGAATGCGAAACAAAAAAGCTTCATGATAAACTAGACCCAGTAGCTTCCATTTGATAACTCACATTTTAACTCTTTGATACTCTCTTAATGGAAGTGCTTACTTTCTTCGATCGCTCGAACATTATCACTTAGGGTTAAGAATATCTCAAAGCTTGCCTATGGATATACTTTTGGATGTTTGATAGCTTTCTCTACAAGTTTACAAGTTAATGTTTTAGATATTCTCTGCTCCTTGACCCCCCCCGACTATGTTTAAAAATTTAATATTTGTACACATTTAGTGAATTCTTTATTCATGCATGGTTTGAGCCAATACTACTGGTTCGGCTGTACCACTAGCTATTACTATAGATCCGTCCATGGTGCTCAACTGCTTACTCACATGCTCCAATACATTGGCTACATCCGCATGCCCACCATATTTTTTAATATTAAAGGGTTTGCAGATATCTAGACAAGAATTTTGTTTTGTCCCTTTCTTTTCTCTGGGAAATCATTTCAACCTTTATTCTGATTACACCATTTTTCAGGAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAGGTAAGAGGTACAAATTCTATGTCTCTTTTGTTTTATTTTCCACAAACTTCTATTCGCTGGTATGATATATTTCAGGAAACTCGTTTTTGCTCTCGTCATTTTTTACTTAATAACTTTCTTGAGATAGTTGCATTTTGACATCATTGGAGTAAATTTTAAGTTTTCTGGTGGGCAATGCAAATCAAAGTCAAGACACCAAAGCTCTTCCGTCTATCTAGAACGTACTTATAGTGCTTCCGGCTACCATCTCTGTTAGTCCAGCATGCTTTCCTCTCAGCAACGTTTCCTCCAAATTTCGTATATCTTTTACTTTCTTAGTCATATTGGGCTCTCAAAACTTTATCTGCGGATTTTCTTTAAGTGATTATTTGAGTTTCCTCATTTGAAGGTTAAATTTTTGATATACAAAGTATTCTTTCTAGCTAGAAAGCAACTAAAAATGTACATCAATAGTTTTTGATCACATTCTTGTACATATTTTGGTAGGGTAAATTTTTGTGTTTTTACTCATATTTCCTGTTATTCATTTTTATTGTCAAGACTCAAAATGGAGAGGAGAATGTTCTTTTCCTAGTTGAAATCGTGCGAGATTTTAGAAGGCAATGCATGTAGATTCAATTGGTCTGAAAGAAGAATAAATTTTGTTAATAAAATAAATTTAGGATGCAGAAATTTGTTGGGTTTCTGAACGCACTGAGATCAGTCAACATCTAATTCCATTCAAAAAATAAATGGAAATGCATTGTATCTCTATTTTTTTTGGTGCAAAGAGCAGTGTATAGAGGACATAGACCAACTTGTTGATTTGTTAGGAACTTTGTTACTTTTTTTAGTACCCTTAATGCTAGGGATACAATTTACCAGTTTCACAAAACAAAACAAAATATGAATACAACAATTTATCAAAGCATATGCAGTGTATAACTAACTCGGAGCTCAACAGGTTTTAAACTGTACTTGCGAATGAGGTTTATGCTCAACAAGTGTCAAAACTCAGCCAATGCATGCTAATCTATTCAAATAATAGTTCATGGTGTCAAATACACCCAAACAACTTACTACTGAACTTGGCTGGTTTGCTTTATGTGGCTGGTTACAAACAGTTCATGCGTCACTCAACACAACTTTTCGGAAAGAGGGTTATTTATATGCAGTAGGTGTTTCTCTACCTTCACAAGGTAGGGAAAAGGCTGCGTACACATGACCATCCTCAGAGCCCACTTGTGGGATTACACTAGGTATTATGTTGTTGTTATAGTAGGTATCTCCCGTGCAGCAGTGAGGAAGCAAACTGTGACCCCCCTCTTCTTCAATGCCTAGTGGCAGATGAAATACCATCACTATATCGTAATATATTCAGGATACCTTTTGTTATGGCATGCACAGTAAGGGAGCTATTTACCAGCTGGGTTTTGGGGGAATTAGAATATCATCTAGGAAGGTTTGGAACACAGTGCATGCTTGTGTTTGTTGGGTATTGTGGAAGGGAATGAATACCAGATGTTTCAAAGGGAAACGAGGGTGGTTTCAAGACCTAGCAGGCTCTTATTTCTGTTGATTAAGATGATGAGATCAAATATAATAGATAGTTATCCTGGCCAAGAATGTGTCTGATCGCACCCTAGTTAAGAAAAAGCCATGGAGTCTACTGTAAGGAAAATGAACTAAAAAGAAAGTAGATTATGGTTTACTATCCAAGCTTGCTTGCTTTAGGTAATTTGGACAGACAGGAGTCAATCCTAATGGAAAAGCAGAGTCATCTGGTAGATTTTGATACAAATGTTCTTTTTATGGTCGTTTTGGTTTAACATTCTGGATGTATATGGTTTAGAGTTTTATTTTGGTTGCAAAGCTCCGCTTTTGTTTTGTGGGAGACTGGATTTTGTACTGCAGTGTTCTTCCACCTCTTGTTTGCTTTTTGTATAAAATAAATTGTTTACTTGTCCAAAAAAATGTCCTTAACAACTACTTTCTAACTTCAGTTTTCTCTCAATTTTGTGGTTTTATAATGTTCTTATCAATCTTGTTGTTCCAGTATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAGGTACTTGAACTAATTTGTTGAGCATCGTTTTATTTCCCTGAAGCTTTCCGTGCCATGCACAATTAAGACTGTATCATGTTCATAGAAGTCCTGAAGTAGAATTCACTTTCTTGATTCCCGTGGATTCATTTTCATCTCCTATGCCTATACCTAGTGGGAAAAATTGGGGACTTCCCTTTTCTGAATAAATAGTAAAGGACAGTAGGCTATATAGGGCTGTAAAATGGAGGTTATAAGAAGACAACAGTATGTAATACTTAAGGTTTTCGACTTAGAGTGTCACTATATAATTGTCAACTTTTAATCACACCATTCCAAATTCATTCTTTTATAAAAGTGTTAACATGCAATTACTCCCATTTTCTTGTGAGAGAATTTCCTTCTTATTGATTTATGAACATATTCGAGGTGATTTAAACTTCCTTTTCAAAAAAAAGGAAGAAAACGTTGGAGGTAATTTAGATGTCCTTATATAAGAAAAAAACATATTGGAGGTAATTTAAACTTTAAAAGCTGGTTCTTTTGATCCCTGATATAATACAAAGTTACCATTTTTTTTTAAAGAAGAAGCTGTTTCGTTATGATAGCTAGGATCTTTTCCAGTAATGTGGGAAACAAGTGGAGAAAAGAAACAGGATATCTTTAGTTTAGCTGTTCCTAGGTTTAGATTAATGTTTAAGTTGTTTAGCTGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTTTAGATTAATGTTTAAGTTGTTTAGGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTAAGTTATCTTTTGTTTCCCTGGATATCTGTAATCCTATTTGTCTTAGGAGTTCAGTTATAATTCAAACAATTAGTTTTATCCTTATTAGAAAAGGATTTTAGTCAGCTCATGAAAAAATATTCATATGGTGTTTAATTCTGTATGGGGAATTTTATTTTGATCTCCCAATGGTTTTCGCAGAACCTTTTATTGCTTATTTGGTGCTTTATGCAACCTTAACTGAGGAGGTTATTCCTAGGTAATTCTAGCTTCTTTGGTTTACTGCTTTATTTCATAGGTGCTTGAATGCTAATGGTTGGTGAATCCCCTCTATCCTCCACCAGCTATTGTTGGCTCACACTGAACTTCCTTAAAACCATTCTAGATTTAAATACATAGCTACTGCTTAGTTCTTTTTTGTCATCCCTCTATCAATCAGCCATTTGTCTCACACTGACTTCCTAAAGATTATTCCAGCTTTAGATATGTTGATAACTATGTTGTTGCATTATTCTTTATCTTGTAAAGAAGAAAGTGTGACTCACATGTTTGTTTCCAATAAGAGAGGATAGATGTGGAACTTGTTGATGAGCTTTAGATATGCAGCTAATTGCTTAGTTGCACTGTTCATTCTCTTGCAAAGAAAATGAGAGTGACTGTCAGATGTTTGTTTCCACAGAGAAAACATAGCTGTGAATTTTGTTGATGTATTCATGGTTTCATTGATGCTTGATCATTGTGGTTGGCATGCTTCCTCTGCGGACACCATTTTTCCTAAATAAACAAGCTGAGCTTTTAGATTTTATTGCAAAGAGGAAGATGTTGTAATCAAAAGAGAATAATAGAACACGCATAAATGAGTAACGATATGAGTGTTATCATACATCACTTTAATGACAACAAGGCCCCTAAAGGCATCTTTGATTTAGCTAACCATCTCTTATCATCACTCAGATTTGTTTCTAAAAGTAATTTTAATATTGTTTCTAAAATTCTAAGTGATCGAAACATCATAGGTTTCTTGTCCTAAAAAATAAAAAAACTGATTGGGGAGGGTCGCAAGCCTCTTAATCACACTATCAAGAAATAGAAAAAATAGCTTGAACTAAGAAACTCACGGGAAGAGGTATTTACTGATTGGATGACGAGATTCTTCTTATGTTGTGCTCAAACGAGGATTTTTGGCCTTGTGGTATTGGTATATAAACCCTTGCAGAATTCAAGAAAGACTCGAACAGATGTAACGGTCACAACAGGTCCCAATGCTTCTTTCCCCGGACGTTGTTGGTGAATGCACAAGGAGTAGTTTCTTAGAAAGACTTTGATATCATGTGAGGAAGAAGTTCTTTTGCTGCTTTTACTAGCTTGCTTTGATATCAGATGATTTTTTTTTTGTTTCAGAAATGGAAATCTCTGCATCCTACTATAGTGAAACACAAAATTTTGAACATTGTTATAACTTATAGGTTATCTACCCTCTCTCTTGCGTGTTTCCCTCCGATTCTAGCTTCTTTTGCTGATGTTTATTTATGGAGTTACTTTTTCCTGCTAAATACTGAACACAATGCAATATAGAGTTGTATATATCTGCAGTTTCTAGTTCAATCTTCACTTAATTTCAACTTGTTATCTCCTATGCTGTCAATTTGTCTTATAACCTTCACATGTTCTTTTATCTTGTGTGTCAACATTTGAAAATAAGACTTTGACAATGCTTGGACGTACCTGGATAGTTAATTTTTGTATTGATGGGTTGCTTAAAGAAGCTCTTGAGTGCATTTTAATCATCTCTATATGTGAATTTTTTGAAGCCAACTGCTGATAAATCTGGCACGCTGATGGGAGTGTTTATGCCATGCTTGCAAAATATTTTGGGGATCATCTACTACATTAGATTTTCGTGGTAAGTTTGCTTACTATCTAATGTATCATGTGATTTATATCAAACTCTTTTTTGGTTAAAGTTTCATGTCTTAATAAAAGTGGACTGGTTCTGTATTCCTAAACGGGCACCTCAAGGACTATGGTGAACCTGCTTTTCAGTTTCAATACTACACATTTTGCATGTTATACTTGCATCTTGCTGGTTTCTCTTACTATATGGAAGTTTGGTGGGTGATGTTCAAGCAATTTAGTCTACATTACTATAGTACCAATCAGCTCTTCTCGTTACTCCAGAAAGGCGTGGTTATACTGGTATCATGAAATACTCAAACTGATCTGCTCCTGCCCCCACCTTTGACATTTTCTAATATAGAAATTAATTACTGTGAGTAGAGATAGAAGGGGAGAAAAGTTATCTTCAGGTAAGATAAGGAAGTGAAAAGGAACAGGAGAAGGGAACAATGAACAAATGCACCCACTACCTATGATCTACTACTGTTAGTTTGATGATATCCTTTTTCGCTCCAACTCAAATAACCACTCTATTTGTGTTGGTTTGTTTTTGTGTATACTGCAGGATTGTTGGTATGGCAGGCATTGGCGAGTCATTGTTGCTGGTTGTGTTCTGTGGATCATGTACATTCCTGACCACGATATCATTAAGTGCTATTGCAAGCAATGGTGCCATGAAGGTGGGAAAAAAATCATCAGATACAACTTCTGTGCAGATTAAAAGGATAGATTTTTAATTTCGTTTCCAGTATAACAAGCTTGCTTTGATATGTGTATCTCTGTTGCCCAGCATTGGCTAGACAATAATATGGATGAATTCTGTGTCTGTCATTCCACCTTATGTAAAAGCTCAACCCGTTAGAGAGAGCATACTTTTAATTACTTAACTATGTGTTTCAACGATCTCCTTGTAGCTTATTTGTTAAGTGATATCCTAGATTTGTTTTCTCTAATCTAGGGTGGTGGCCCTTACTATCTCATTGGTCGTGCATTGGGTCCAGAAGTTGGTGTCAGCATTGGGCTCTGTTTTTTCCTTGGGAATGCAATTGCTGGTGCAATGTGAGTATACATCTGATGTTATATTTTTGTGTGAAGGAACTACTTACTTAGCTGGGGTGTGGGGGTGTGGGTGGGGGTGGGTGGGTGGGTGTGTATGCCAATGTAGGTTAAGTTGCTTCATTATTTCAAACTATCTACAAAAAGATTTTGTGTTGATGCCTGCTCTTATATGTTCCTGCCGGTTAGGTATGTACTGGGAGCCGTAGAGACTTTTCTAAATGCTGTACCAAGTGCGGGCATCTTTAGAGGTATTCCTTAAATGAGATTGAACTTTTATGATTTAGAAAATGGCTTGGTGTTGTCTGTACTTCTACGGTAAAACCATCTGATATCCTTCTGGCTTTATCATAACATTGATACAAGTAACTTATTGTTGATTTTTGATGGATAGTACTGTATTATTTTCAAATTCATTTGTATATCTGAACTTCATTTGTCATCAATGCAGAAACTATCACACGAGTTAATGGCACAGATATTGCAGAGCCCATTACAAGTCCAAGTTTGCATGACCTGCAAATTTATGGGATTGTTGTATCTATTCTTCTCTGCTTTGTCGTGTTTGGTGGAGTAAAAATGATCAATCGCGTTGCACCTGCATTTCTTGTCCCTGTTTTGTTCTCATTGCTTTGCATATTTGTCGGCATCTTTTCTGCGAGGCATGATCATCCAGCAGGTTTATGTTGTCTATGCCTTATTCTTATTCTTTCCTGTCTTACTTGAGAGTTTTTTTTAAAACTGTGTGTTATTCTTATGTGCTATACACTTCCCTTGCATACTCCCTCTGTTTCATTTTAGGTGACTTACATTTTTTAATTTGTTTCGGAAAGAATAACTACTTTCTTGGTTTGGAAATTCTGTAACTTTAAACTTCCTATTTTACTATTAATTACATTCTCTTATTGTTGAAAATTGTCCTAACATGTTCAAGACCACGAATTCTCAAGTACTTTTGGTATGTGACAAAAGTTTTACTTTCTTTCTTAAATTTCTTGCCTAGTCAAACACTACATTCATCAGCTTTCGCTCTGTTAGTGGAGTCTATAGTGTACTGGTATTATTGAAATGGTTTTTAGTTCTTGATCTTAATTTGGTATCTCAACCTCGTTTATTTTCACTATTTTATGTTGCTTTAGTGATGAGCCTTCAGTAGTTCATACACCAATCTAGTTAATTTTATTAGCTTGAGGTCATCATGGAGTATAGTAAAGTCAAACATTGTTGTTTCTTTCCTTTGAACAAATTGCATCTTTGAAGCCATATATGGAAGTCAAGGGCTACATATTATTGATGATAAGCTGTAGAATACCAATTAATTACTGGTTTTGCTAATAAGAATAATGATTCTGAAGAACTATGAATCCAGGCAAAATATAGCTAACTTGGAAAGGCAATCAAGTAACATCAAAATCGTAAAACCACTACAAAAGAACTAGAGAAAGTTACCCAAAAGTAGTATAAAGTAAAGTAAAGATGGGTTCCTGTGTCATGATATCTCGAGGACTGGTGTAAAGTAAAGATGATTTAATTTTTGTGAATTATCTCTTTATTGATGGATATAGAAGATTCATATGGTCAATCCCAGAGGTATTTGCAAAAGTGTTACGTATGTCTGTTCTCCCTGAAGTTTTAATACTCATGGTTGTCATTTCTCATGTGACACCACCTTTTTACTCTGTTGCTATGCATGGTACAGTGGGGATCACAGGGTTGAGTTTGGAATCTTTCAAAAACAACTGGGGGTCTGCTTATCAGATGACTAATAATGCTGGAATTCCAGATCCCAATGGCGACATATACTGGAATTTTAAGTAAGTCATACAATTATTTTTGTTGGTTCCTTTATTTTGCACCATCTTTTTGCTAGGATTAGTTATTTGTTCTTCTTTCTGCCGTTTACTTCAATGTGCATACTGAAAGCATTTAGAACCAAGTCTTAACATTTATTTCCTTCTCCATGTTAGTGCATTGGTAGGTCTCTTCTTCCCTGCTGTAACTGGGATCATGGCAGGTTCGAACCGTTCGGCATCTCTAAAGGACACTCAACGTGCAATTCCTGTTGGGACCTTAGCTGCAACTTTGACTACCACCAGTTTATATCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAGGTATGTATGAGTATCTTTTTATAGTTTACACAGCTCACATTCTTTTGTACTGCTCTTTTCTTGTTTTCTCAGAACTCCCTGTTTCCTCCCATGTGTCATCTATATTTGGGCAAGATTGAGTGAGGGAAATACAAAAGCTAAGATTTTCACTGAAGGGGCCATAATGTACTCATTGTGATAGTTTTTTTTCCTATTAGTTTATGAGAAATTTTGTTACGTGTCCAGATCGTTATGTTGCATTTTTGTTCCATTTGATATAAAAATTCAAAATTTTACGAGAGAAATATGAAAGGACATCATTATCAAAATAAGAAATATGAAAGGACATGTGAAACTCTCACCACCTCTCATTTAATTGTTGATAGAGTTAGGGCAATTGTGGTAATTTGCAGTTTTCATATACTCCCTTTGTCCAACAGAAGTTATCCACTATACTATTTTAGGATGTCCAACAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTCCCTATTAGATTTTTCAAGACACTGTTTTTATTATATTCAAAGGGTATTATAGTAAAATTACTCTTCTATTAATAGTTTCTTAAGAAGTGTGCAAAGTCAATAGTAAACAAGTATTGTTGGACAGAGGGAGTACGTTGCTTATGAGTTAAAAATCTGAAACTGTGTGACCTTGGGTCACTTACTTTGTAGTGGTTATTCCTCTCTAACAAAAATTCAATTACAGTAAAATCCCATTGCCCTGGTTCATATTATAATTAACTTGTATTACCTACTATATGGAGGTACATATAAGCTTAAAAAAAGAAACAAAAATAAAATATCCCTTTTGTCACCACCGCTAAACCAAAAGAATAGAATTTATTTTGTGGAAATTATATTTTTCAATTAAGTGGAGTCTCCATTTAACATCTCTTTATGTGGTTAATCTTTCACCCAAAAAACATTCTAGGAAAACTGTACTTTCTGATCGAAGAACTTTGAGAGGTTTCAGAAATAATATAGCTCGTAATTTTAACAAGAAAACGAGCAATGCCACAATAACAGGAAAAAAGAAATATTAGTGATTAAACAGGAGCATAGATGTCTTTTTTATGGGTATAGTTTGTGCTGTAAAGTAAGGAAAGGAGCCTTATGTGCGCATATTAGAGCAAGAAGGGGTATTATTGTATGTAATGTTGCTAAAGTAAATAATTAGTACCTGTAGTTTAGCCAACATTATATCCCTCTTTAGCTGAGGTACAAAAGAGTTGGAGGCCTAAATTTGTGAAAAAAATTCTGGCTATGGTGGGACCACTTATACTATAATATACCAATGATATATCTATTTTGGAGATGGTGATCATTTTGTTACTTATCTGTTTGTGCTCTAAAATTCTTGTTCGTTGTGCGATTGTATGAAGTCTAGTTAGCTAATTAGCAGCGTGAAGATTAGATGACTTTTATGTTATATGTACAGGCATGGCTTATTTATTGGTTACTCCCTGTAGAATTCTGAATCATGGATTTTGGCATCATACAATTTCTGTCTATGAAATTAATGAATTAGCACCTTTTAAAAAGATTTAAGTGTCTGTTTGAGTTATTCTTGAGCCATTTCTGTTCTTCACGTAGACACTGCTTGGTCGGTCCTACTGCTATGTAGTGTGCAAATGAACTTCTAAGATTGATTAGCTGAATGTGATATAATATAAGTTTTAGGGTAAGTACATCGTCAATCCCTTGAATCTGCTAATAAATATCATTTAGACACTCGGAACAATGACATGTTCCAATTGAGCACCTAAACACATGGTAAAGTGTTCCTATAAGATATCTCCGGCTCATTTTAAAAAGTTTCTACATGTGTTCACAAACATCCATTATGTAGATAAGTTAATCACATAAAGTGTGCATCCTTTTTTAATTATCCATATCAACATCGATGAGAATTGCATAAGGAATGTGTGAATATATTGGCTATTATTTGATTAAAAATGGAAAATAATGTGTATGAATATATTGGCTATTACTTGATTAAAAAGTAATAATAGGTACAGACTTTAAATGGCAAACCTTCTTTTATTCTTCACTTTTTGTATGGTTATTGGAATAGACTGAATCACTAGAAATTCACATACTTCCCTCGAGTACTTTAATGTATTAAGTTATTAATTGTACAAAACAGAGATTGAAGACTACAACTTTATCATTCAGGAATTTCTTTTCTTGGTTCACTATGTTTAAAAATGTAAGATTTTATATTTGTATGATCCTATTGAAACATTCTATTGCATATGCAGCAAACCAGGTACATCCGAAAAACTGGTATCCTATCCCACTTATATTTTGTCGTCCGTGGGGCAAGCTGCCAGAAAATGTGCCTTGCCATCCAAAGCTTGCCGACTTTGCCAACTGCATGAAGAAAAAAGGCAGGGGAATGTCCATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGC</genome_strand>
        <mrna_strand>GCTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582665" ref_strand="+" ref_description="SGN-U582665 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=1e-84) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=3e-80)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; (*SWP) sp|Q9Y666|S12A7_HUMAN (e_value=3e-19) Solute carrier family 12 member 7 OS=Homo sapiens GN=SLC12A7; ">
      <seq>catctttgtctctattatcgatggagactaccatgaacgtgctgaggatgctaaggacgcttgcaaggaactaagtacctatattgactacaagcaatgtgaaggtgtagctgagattgttgttgccccaagcatgtctgaaggctttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctgtaagatacaggtgttctgcattgcagaggaagattctgatgcagagggattgaaggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125732" stop="124628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125432" g_stop="124928" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U582665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125432" e_stop="124928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</genome_strand>
        <mrna_strand>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583425" ref_strand="+" ref_description="SGN-U583425 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=3e-110) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=6e-106)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; (*SWP) sp|Q63632|S12A4_RAT (e_value=6e-45) Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4; ">
      <seq>tctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgcgatctttgggaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="130462" stop="127589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130162" g_stop="130103" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130102" i_stop="129469" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129468" g_stop="129068" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="461" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128049" g_stop="127888" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="623" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-U583425" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130162" e_stop="130103"/>
          <exon e_start="129468" e_stop="129068"/>
          <exon e_start="128049" e_stop="127888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</genome_strand>
        <mrna_strand>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5919" PGL_stop="5266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5919" e_stop="5266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="5919" e_stop="5266" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5919" stop="5266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCAGGATTCTTCAAAGGGAAATCAGACTATGTCCAACGTCCAATTCCTATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTGAGTGAGATATCGGAATCTGAAACACCTTTCCCTCATAGAGATGGAAACATATTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAATAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGTGTCAAGATCTCCTAGAGCTGCTTATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTGGTCAAAATCAAGACTAAAGTTGATCCAACAAATTTCTTTAGGAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATGTATATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAGGAAGCCTTCCAAAGATATTTTATAAGATGTATTATTGTTTGATTTGTAATAAATTTTCTATGT</gDNA_template>
            <first_frame> Q  S  G  F  F  K  G  K  S  D  Y  V  Q  R  P  I  P  I  N  G  L  E  G  I  W  K  L  F  N  Q  V  G  E  N  S  A  E  L  Q  L  S  P  Y  G  G  K  L  S  E  I  S  E  S  E  T  P  F  P  H  R  D  G  N  I  F  M  I  H  Y  G  V  N  W  G  E  M  E  S  S  N  K  H  I  S  W  I  R  N  L  Y  G  Y  M  A  R  Y  V  S  R  S  P  R  A  A  Y  L  N  Y  R  D  L  D  L  G  V  N  N  K  G  N  T  S  Y  E  Q  A  R  V  W  G  V  K  Y  F  N  N  N  F  D  R  L  V  K  I  K  T  K  V  D  P  T  N  F  F  R  N  E  Q  S  V  P  P  L  Y  I  *  F  M  H  S  T  N  K  A  Y  H  I  *  *  F  F  Y  V  Y  I  Y  S  N  I  V  L  K  N  K  C  S  Q  E  A  F  Q  R  Y  F  I  R  C  I  I  V  *  F  V  I  N  F  L  C </first_frame>
            <second_frame>  N  Q  D  S  S  K  G  N  Q  T  M  S  N  V  Q  F  L  *  M  V  L  K  V  Y  G  N  Y  S  T  K  *  A  K  T  R  L  N  Y  N  *  V  P  M  E  E  S  *  V  R  Y  R  N  L  K  H  L  S  L  I  E  M  E  T  Y  S  *  S  I  M  G  *  I  G  V  K  W  K  V  L  I  S  I  Y  L  G  F  E  T  F  M  D  T  W  L  G  M  C  Q  D  L  L  E  L  L  I  *  T  I  E  I  L  I  *  E  *  T  T  K  E  T  Q  A  M  N  K  Q  E  F  G  E  *  N  I  S  T  T  T  L  I  D  W  S  K  S  R  L  K  L  I  Q  Q  I  S  L  G  M  N  K  V  F  L  L  Y  I  Y  N  L  C  T  L  Q  I  R  L  I  I  Y  S  S  S  F  M  Y  I  Y  I  V  I  *  Y  *  K  I  N  V  A  R  K  P  S  K  D  I  L  *  D  V  L  L  F  D  L  *  *  I  F  Y   </second_frame>
            <third_frame>   I  R  I  L  Q  R  E  I  R  L  C  P  T  S  N  S  Y  K  W  S  *  R  Y  M  E  T  I  Q  P  S  R  R  K  L  G  *  I  T  I  K  S  L  W  R  K  V  E  *  D  I  G  I  *  N  T  F  P  S  *  R  W  K  H  I  H  D  P  L  W  G  E  L  G  *  N  G  K  F  *  *  A  Y  I  L  D  S  K  P  L  W  I  H  G  *  V  C  V  K  I  S  *  S  C  L  F  E  L  *  R  S  *  F  R  S  E  Q  Q  R  K  H  K  L  *  T  S  K  S  L  G  S  E  I  F  Q  Q  Q  L  *  *  I  G  Q  N  Q  D  *  S  *  S  N  K  F  L  *  E  *  T  K  C  S  S  S  I  Y  I  I  Y  A  L  Y  K  *  G  L  S  Y  I  V  V  L  L  C  I  Y  I  *  *  Y  S  T  E  K  *  M  *  P  G  S  L  P  K  I  F  Y  K  M  Y  Y  C  L  I  C  N  K  F  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5919" stop="5422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSGFFKGKSDYVQRPIPINGLEGIWKLFNQVGENSAELQLSPYGGKLSEISESETPFPHRDGNIFMIHYGVNWGEMESSNKHISWIRNLYGYMARYVSRSPRAAYLNYRDLDLGVNNKGNTSYEQARVWGVKYFNNNFDRLVKIKTKVDPTNFFRNEQSVPPLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14554" PGL_stop="13449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14554" e_stop="13449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="14554" e_stop="13449" e_length="1106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14554" stop="13868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14522" stop="13449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTAGAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTAGTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATTCAAGATCGAGAGTCAATGGGTGAGGATCACTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAGGTGAAATTAGTTGATATTCCACAAAAGGTAACTGTATTCAATGTGACACGAACGTTGGAACAAAATGCAACTCAACTAGTCTACAAATGGCAACATATCGCGGACAAAGTTGATGACAATCTCCTCCTCAGGATCTTCCTGAGGAGCAATATTGAATCTCCATTCAGGCGTGGACAAAGGACTGTCCACGCCTTTTTCACTACAATGTTTGTTGGAGGAGTAGATGAACTCCTCCGCGAAATGCAAAATAGCTTCCCAGAACTAGGGTTAGTGAAAGACGATTGCATTGAGATGAGTTGGATCGAATCTATACTCTTCTTTGCGGGTTTCCCTAGGGGAACATCACTTGATGTGTTACTAGATTGGAATACCA</gDNA_template>
            <first_frame> N  K  *  S  N  D  D  *  F  Q  Q  V  N  N  L  F  L  S  L  N  L  P  N  F  I  I  M  G  *  Q  N  S  *  *  L  S  *  M  P  F  S  Q  N  Y  E  L  N  L  N  I  T  S  N  P  H  S  *  K  L  I  I  F  N  H  L  *  L  L  F  R  *  R  K  D  N  L  R  L  Q  T  I  N  Y  F  H  S  Y  Q  R  I  S  N  P  G  S  Y  T  L  L  Q  D  T  *  P  T  N  *  D  S  K  R  W  T  *  L  *  G  T  F  I  H  F  G  H  P  F  F  H  N  *  S  *  K  P  K  I  N  I  R  *  Y  P  K  K  D  C  L  D  S  S  W  R  D  S  R  G  S  L  L  *  N  R  G  K  K  *  K  I  G  C  S  C  W  G  L  P  N  C  W  C  W  W  T  L  *  W  W  R  L  W  H  D  V  T  K  I  R  Y  C  C  *  *  H  H  *  C  K  I  N  *  C  *  W  T  N  S  R  S  R  V  N  G  *  G  S  L  L  G  Y  *  R  R  W  R  D  *  F  W  S  H  Y  L  M  E  G  E  I  S  *  Y  S  T  K  G  N  C  I  Q  C  D  T  N  V  G  T  K  C  N  S  T  S  L  Q  M  A  T  Y  R  G  Q  S  *  *  Q  S  P  P  Q  D  L  P  E  E  Q  Y  *  I  S  I  Q  A  W  T  K  D  C  P  R  L  F  H  Y  N  V  C  W  R  S  R  *  T  P  P  R  N  A  K  *  L  P  R  T  R  V  S  E  R  R  L  H  *  D  E  L  D  R  I  Y  T  L  L  C  G  F  P  *  G  N  I  T  *  C  V  T  R  L  E  Y   </first_frame>
            <second_frame>  T  N  N  Q  M  M  T  S  F  N  K  L  T  I  F  F  F  L  S  I  C  L  I  S  S  S  W  A  N  K  T  H  D  D  F  L  E  C  L  S  H  K  I  M  N  S  T  L  I  S  Q  V  I  H  T  P  K  N  S  S  Y  S  T  I  Y  N  S  Y  S  D  N  V  R  I  T  S  D  F  K  P  S  I  I  F  T  P  T  K  E  S  Q  I  Q  A  A  I  H  C  S  K  I  H  D  L  Q  I  R  I  R  S  G  G  H  D  Y  E  G  L  S  Y  T  S  D  T  P  F  F  I  I  D  L  R  N  L  R  S  I  S  V  D  T  Q  K  K  T  A  W  I  Q  A  G  A  T  L  G  E  V  Y  Y  R  I  A  E  K  S  K  K  L  A  V  V  A  G  V  C  P  T  V  G  V  G  G  H  F  S  G  G  G  Y  G  M  M  S  R  K  F  G  T  A  A  D  N  I  I  D  A  K  L  I  D  A  N  G  R  I  Q  D  R  E  S  M  G  E  D  H  F  W  A  I  R  G  G  G  G  T  S  F  G  L  I  I  S  W  K  V  K  L  V  D  I  P  Q  K  V  T  V  F  N  V  T  R  T  L  E  Q  N  A  T  Q  L  V  Y  K  W  Q  H  I  A  D  K  V  D  D  N  L  L  L  R  I  F  L  R  S  N  I  E  S  P  F  R  R  G  Q  R  T  V  H  A  F  F  T  T  M  F  V  G  G  V  D  E  L  L  R  E  M  Q  N  S  F  P  E  L  G  L  V  K  D  D  C  I  E  M  S  W  I  E  S  I  L  F  F  A  G  F  P  R  G  T  S  L  D  V  L  L  D  W  N  T  </second_frame>
            <third_frame>   Q  I  I  K  *  *  L  V  S  T  S  *  Q  S  F  S  F  S  Q  F  A  *  F  H  H  H  G  L  T  K  L  M  M  T  F  L  N  A  F  L  T  K  L  *  T  Q  P  *  Y  H  K  *  S  T  L  L  K  T  H  H  I  Q  P  F  I  T  P  I  Q  I  T  *  G  *  P  P  T  S  N  H  Q  L  F  S  L  L  P  K  N  L  K  S  R  Q  L  Y  I  A  P  R  Y  M  T  Y  K  L  G  F  E  A  V  D  M  T  M  R  D  F  H  T  L  R  T  P  L  F  S  *  L  I  L  E  T  *  D  Q  Y  P  L  I  P  K  K  R  L  L  G  F  K  L  A  R  L  *  G  K  F  T  I  E  S  R  K  K  V  K  N  W  L  *  L  L  G  F  A  Q  L  L  V  L  V  D  T  L  V  V  E  A  M  A  *  C  H  E  N  S  V  L  L  L  I  T  S  L  M  Q  N  *  L  M  L  M  D  E  F  K  I  E  S  Q  W  V  R  I  T  F  G  L  L  E  E  V  E  G  L  V  L  V  S  L  S  H  G  R  *  N  *  L  I  F  H  K  R  *  L  Y  S  M  *  H  E  R  W  N  K  M  Q  L  N  *  S  T  N  G  N  I  S  R  T  K  L  M  T  I  S  S  S  G  S  S  *  G  A  I  L  N  L  H  S  G  V  D  K  G  L  S  T  P  F  S  L  Q  C  L  L  E  E  *  M  N  S  S  A  K  C  K  I  A  S  Q  N  *  G  *  *  K  T  I  A  L  R  *  V  G  S  N  L  Y  S  S  L  R  V  S  L  G  E  H  H  L  M  C  Y  *  I  G  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14553" stop="13450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNQMMTSFNKLTIFFFLSICLISSSWANKTHDDFLECLSHKIMNSTLISQVIHTPKNSSYSTIYNSYSDNVRITSDFKPSIIFTPTKESQIQAAIHCSKIHDLQIRIRSGGHDYEGLSYTSDTPFFIIDLRNLRSISVDTQKKTAWIQAGATLGEVYYRIAEKSKKLAVVAGVCPTVGVGGHFSGGGYGMMSRKFGTAADNIIDAKLIDANGRIQDRESMGEDHFWAIRGGGGTSFGLIISWKVKLVDIPQKVTVFNVTRTLEQNATQLVYKWQHIADKVDDNLLLRIFLRSNIESPFRRGQRTVHAFFTTMFVGGVDELLREMQNSFPELGLVKDDCIEMSWIESILFFAGFPRGTSLDVLLDWNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25744" PGL_stop="25281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25744" e_stop="25281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="25744" e_stop="25281" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25744" stop="25281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTGAAATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTTAT</gDNA_template>
            <first_frame> E  S  E  I  P  F  P  H  R  A  G  N  I  F  T  I  E  Y  G  V  Y  W  S  R  I  E  N  S  Q  R  N  I  A  W  I  R  K  L  Y  E  Y  M  G  K  Y  V  S  K  S  P  R  A  A  Y  L  N  Y  R  D  L  D  L  G  M  N  N  I  N  G  N  T  S  Y  E  Q  A  R  V  W  G  V  K  Y  F  N  N  N  F  D  R  L  V  Q  V  K  T  K  F  D  P  T  N  F  F  R  N  Q  Q  S  I  P  P  L  L  S  L  G  Y  N  I  W  *  L  I  Y  I  *  Y  Y  S  T  E  K  *  M  Y  V  A  R  I  D  L  F  Q  R  L  C  T  I  Y  I  V  *  F   </first_frame>
            <second_frame>  N  L  K  F  L  S  L  I  E  L  E  I  Y  S  R  S  S  M  E  C  I  G  V  E  S  K  I  L  K  E  I  *  L  G  F  E  N  F  M  N  T  W  V  S  M  C  Q  N  L  L  E  L  H  I  *  T  I  E  I  L  I  *  E  *  T  I  L  M  E  T  Q  A  M  N  K  Q  E  F  G  E  *  N  I  S  T  T  T  L  I  D  *  Y  K  S  R  L  S  L  I  Q  L  I  S  L  G  I  N  K  V  F  L  L  Y  Y  L  *  V  I  I  Y  G  S  *  F  I  Y  N  T  I  V  L  K  N  K  C  T  *  Q  G  S  I  C  F  K  D  Y  V  R  Y  I  L  F  D  L  </second_frame>
            <third_frame>   I  *  N  S  F  P  S  *  S  W  K  Y  I  H  D  R  V  W  S  V  L  E  *  N  R  K  F  S  K  K  Y  S  L  D  S  K  T  L  *  I  H  G  *  V  C  V  K  I  S  *  S  C  I  F  E  L  *  R  S  *  F  R  N  E  Q  Y  *  W  K  H  K  L  *  T  S  K  S  L  G  S  E  I  F  Q  Q  Q  L  *  *  I  S  T  S  Q  D  *  V  *  S  N  *  F  L  *  E  S  T  K  Y  S  S  S  I  I  F  R  L  *  Y  M  V  V  N  L  Y  I  I  L  *  Y  *  K  I  N  V  R  S  K  D  R  F  V  S  K  I  M  Y  D  I  Y  C  L  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25744" stop="25379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESEIPFPHRAGNIFTIEYGVYWSRIENSQRNIAWIRKLYEYMGKYVSKSPRAAYLNYRDLDLGMNNINGNTSYEQARVWGVKYFNNNFDRLVQVKTKFDPTNFFRNQQSIPPLLSLGYNIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27051" PGL_stop="26171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27051" e_stop="26171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27051" e_stop="26171" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27051" stop="26171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATATGTATGAATAAGCATAACAACTACTGCAACAACAAATAATCAATTATGAGTAAGTTAACAACTTTTCTCATTCTCTCAATTTGCCTAATTTCATATTCATGGGCTTACAAAAGTACTCATGGTGACTTTGTTGAATGTCTTTCTCACAAAATTATGAACTCAACCTCAATATCACAAGTCATTCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTTTTTAGATCATAACTTAAGGATAACCTCCAACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGTAGCTATATATTGCTCCAAGTTACATGACCTACAAATTAGAATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATATATTTCTGACAACCCCTTTTTCCTGATTGATCTTAGAAACCTAAGATCAATCTCCATTGATATAAAAAACAAGACTGCTTGGGTTCAAGCTGGCGCGACTTTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAACAATAAATTGGCCTTTGTTGCTGGGGCTTGCCCTAGTGTTGGTGTTGGTGGACACATTAGTGGTGGAGGCTATAGCATGATGTCAAGAAAATTTGGTATTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACAGATTCAGGATCGAGAATCAATGGGTGAGGATCTGTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAAATAAAATTAGTTGATATTCCAGAAAAGGTAACCGTGTTCAATGTGGGACGAACATTGAAACAAAATGCAACTCAACTGGTCTACAAATGGCAACATATCACGGACAAAGTTGAT</gDNA_template>
            <first_frame> L  Y  V  *  I  S  I  T  T  T  A  T  T  N  N  Q  L  *  V  S  *  Q  L  F  S  F  S  Q  F  A  *  F  H  I  H  G  L  T  K  V  L  M  V  T  L  L  N  V  F  L  T  K  L  *  T  Q  P  Q  Y  H  K  S  F  T  L  L  K  T  H  H  I  Q  P  F  I  T  P  F  *  I  I  T  *  G  *  P  P  T  S  N  H  Q  L  F  S  L  L  P  K  N  L  K  S  R  *  L  Y  I  A  P  S  Y  M  T  Y  K  L  E  F  E  A  V  D  M  T  M  R  D  F  H  I  F  L  T  T  P  F  S  *  L  I  L  E  T  *  D  Q  S  P  L  I  *  K  T  R  L  L  G  F  K  L  A  R  L  *  G  K  F  T  I  E  S  R  K  K  V  T  I  N  W  P  L  L  L  G  L  A  L  V  L  V  L  V  D  T  L  V  V  E  A  I  A  *  C  Q  E  N  L  V  L  L  L  I  T  S  L  M  Q  N  *  L  M  L  M  D  R  F  R  I  E  N  Q  W  V  R  I  C  F  G  L  L  E  E  V  E  G  L  V  L  V  S  L  S  H  G  K  *  N  *  L  I  F  Q  K  R  *  P  C  S  M  W  D  E  H  *  N  K  M  Q  L  N  W  S  T  N  G  N  I  S  R  T  K  L   </first_frame>
            <second_frame>  Y  M  Y  E  *  A  *  Q  L  L  Q  Q  Q  I  I  N  Y  E  *  V  N  N  F  S  H  S  L  N  L  P  N  F  I  F  M  G  L  Q  K  Y  S  W  *  L  C  *  M  S  F  S  Q  N  Y  E  L  N  L  N  I  T  S  H  S  H  S  *  K  L  I  I  F  N  H  L  *  L  L  F  R  S  *  L  K  D  N  L  Q  L  Q  T  I  N  Y  F  H  S  Y  Q  R  I  S  N  P  G  S  Y  I  L  L  Q  V  T  *  P  T  N  *  N  S  K  R  W  T  *  L  *  G  T  F  I  Y  F  *  Q  P  L  F  P  D  *  S  *  K  P  K  I  N  L  H  *  Y  K  K  Q  D  C  L  G  S  S  W  R  D  F  R  G  S  L  L  *  N  R  G  K  K  *  Q  *  I  G  L  C  C  W  G  L  P  *  C  W  C  W  W  T  H  *  W  W  R  L  *  H  D  V  K  K  I  W  Y  C  C  *  *  H  H  *  C  K  I  N  *  C  *  W  T  D  S  G  S  R  I  N  G  *  G  S  V  L  G  Y  *  R  R  W  R  D  *  F  W  S  H  Y  L  M  E  N  K  I  S  *  Y  S  R  K  G  N  R  V  Q  C  G  T  N  I  E  T  K  C  N  S  T  G  L  Q  M  A  T  Y  H  G  Q  S  *  </second_frame>
            <third_frame>   I  C  M  N  K  H  N  N  Y  C  N  N  K  *  S  I  M  S  K  L  T  T  F  L  I  L  S  I  C  L  I  S  Y  S  W  A  Y  K  S  T  H  G  D  F  V  E  C  L  S  H  K  I  M  N  S  T  S  I  S  Q  V  I  H  T  P  K  N  S  S  Y  S  T  I  Y  N  S  F  L  D  H  N  L  R  I  T  S  N  F  K  P  S  I  I  F  T  P  T  K  E  S  Q  I  Q  V  A  I  Y  C  S  K  L  H  D  L  Q  I  R  I  R  S  G  G  H  D  Y  E  G  L  S  Y  I  S  D  N  P  F  F  L  I  D  L  R  N  L  R  S  I  S  I  D  I  K  N  K  T  A  W  V  Q  A  G  A  T  L  G  E  V  Y  Y  R  I  A  E  K  S  N  N  K  L  A  F  V  A  G  A  C  P  S  V  G  V  G  G  H  I  S  G  G  G  Y  S  M  M  S  R  K  F  G  I  A  A  D  N  I  I  D  A  K  L  I  D  A  N  G  Q  I  Q  D  R  E  S  M  G  E  D  L  F  W  A  I  R  G  G  G  G  T  S  F  G  L  I  I  S  W  K  I  K  L  V  D  I  P  E  K  V  T  V  F  N  V  G  R  T  L  K  Q  N  A  T  Q  L  V  Y  K  W  Q  H  I  T  D  K  V  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27007" stop="26171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMSKLTTFLILSICLISYSWAYKSTHGDFVECLSHKIMNSTSISQVIHTPKNSSYSTIYNSFLDHNLRITSNFKPSIIFTPTKESQIQVAIYCSKLHDLQIRIRSGGHDYEGLSYISDNPFFLIDLRNLRSISIDIKNKTAWVQAGATLGEVYYRIAEKSNNKLAFVAGACPSVGVGGHISGGGYSMMSRKFGIAADNIIDAKLIDANGQIQDRESMGEDLFWAIRGGGGTSFGLIISWKIKLVDIPEKVTVFNVGRTLKQNATQLVYKWQHITDKVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37453" PGL_stop="36635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37453" e_stop="37391"/>
            <exon e_start="37303" e_stop="37159"/>
            <exon e_start="37069" e_stop="36635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.984"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="0.979"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="37453" e_stop="37391" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="37390" i_stop="37304" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="37303" e_stop="37159" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37158" i_stop="37070" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="37069" e_stop="36635" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37453" stop="37391"/>
              <exon start="37303" stop="37159"/>
              <exon start="37069" stop="36635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAA : GTACATTCCAATCCATGAAATCCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAATTGAAACTATTGAAATACCTGCAGTAGAT : GTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAGGAGGAATTTGTGCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACGTTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACC</gDNA_template>
            <first_frame> T  K  N  Q  K  Q  I  R  I  C  S  P  C  *  G  H  *  D  L  A  Q  :  V  H  S  N  P  *  N  P  Y  S  I  W  W  T  Q  E  G  E  *  L  *  V  F  S  L  R  L  *  S  F  G  D  S  P  *  S  W  I  N  *  N  Y  *  N  T  C  S  R   : C  G  K  Y  I  Y  L  G  C  Y  D  C  G  R  R  S  E  L  *  G  G  I  C  A  R  G  *  D  F  L  H  Y  N  H  S  E  G  Q  E  G  E  L  D  N  S  Q  H  V  Q  E  H  *  S  R  K  G  C  A  D  N  Q  E  H  F  *  Q  E  E  E  G  V  L  S  T  Q  D  H  Q  I  N  N  L  R  *  A  S  F  Y  F  E  *  R  W  S  S  F  S  L  F  L  R  I  C  I  M  *  *  P  F  C  G  G  S  Y  T  *  L  F  L  V  L  H  S  Y  C  I  C  *  F  I  L  F  S  P  Y  K  E  E  Y  D  L  S  I  F  Y  </first_frame>
            <second_frame>  Q  R  T  K  S  K  F  V  F  A  R  P  A  K  V  T  E  T  L  L  K :   Y  I  P  I  H  E  I  P  I  Q  Y  G  G  L  K  R  E  N  D  F  E  F  S  A  S  D  C  E  A  S  E  I  L  L  K  A  G  S  I  E  T  I  E  I  P  A  V  D  :  V  E  S  T  F  I  W  D  V  T  I  V  G  G  E  V  S  Y  K  E  E  F  V  P  E  D  E  T  S  Y  T  I  I  I  Q  K  D  K  K  V  S  S  T  I  R  N  T  F  K  N  T  E  A  G  K  V  V  L  T  I  K  N  T  S  S  K  K  K  K  A  F  Y  R  H  K  I  T  K  S  T  I  *  D  E  Q  V  S  I  L  S  E  D  G  V  L  F  L  C  F  *  E  Y  V  *  C  S  N  L  F  V  V  V  H  I  L  D  Y  F  W  S  Y  I  H  I  V  Y  A  D  L  F  F  F  L  P  T  R  K  N  M  I  S  L  F  F  T </second_frame>
            <third_frame>   K  E  P  K  A  N  S  Y  L  L  A  L  L  R  S  L  R  P  C  S   : S  T  F  Q  S  M  K  S  L  F  N  M  V  D  S  R  G  R  M  T  L  S  F  Q  P  P  T  V  K  L  R  R  F  S  L  K  L  D  Q  L  K  L  L  K  Y  L  Q  *  M :   W  K  V  H  L  S  G  M  L  R  L  W  A  E  K  *  A  I  R  R  N  L  C  Q  R  M  R  L  L  T  L  *  S  F  R  R  T  R  R  *  A  R  Q  F  A  T  R  S  R  T  L  K  Q  E  R  L  C  *  Q  S  R  T  L  L  A  R  R  R  R  R  F  I  D  T  R  S  P  N  Q  Q  F  E  M  S  K  F  L  F  *  V  K  M  E  F  F  F  S  V  F  K  N  M  Y  N  V  V  T  F  L  W  W  F  I  Y  L  I  I  F  G  P  T  F  I  L  Y  M  L  I  Y  S  F  F  S  L  Q  G  R  I  *  S  L  Y  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37452" stop="37391"/>
                    <exon start="37303" stop="37159"/>
                    <exon start="37069" stop="36824"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRTKSKFVFARPAKVTETLLKYIPIHEIPIQYGGLKRENDFEFSASDCEASEILLKAGSIETIEIPAVDVESTFIWDVTIVGGEVSYKEEFVPEDETSYTIIIQKDKKVSSTIRNTFKNTEAGKVVLTIKNTSSKKKKAFYRHKITKSTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39104" PGL_stop="37989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39104" e_stop="39065"/>
            <exon e_start="38562" e_stop="37989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="0.975"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="39104" e_stop="39065" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="38562" e_stop="37989" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39104" stop="39065"/>
              <exon start="38562" stop="37989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAG : CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAATCTTTCGAAATGCTCA</gDNA_template>
            <first_frame> N  F  T  Q  A  K  Q  P  H  S  T  P  K   : A  V  *  G  R  R  *  F  L  R  S  N  T  C  V  I  V  L  F  I  *  K  H  D  C  *  G  A  M  *  G  N  S  S  G  *  S  S  C  S  T  R  G  I  S  G  C  *  Q  G  C  G  G  G  *  G  E  *  E  G  K  R  R  *  R  R  G  I  Q  A  *  Y  N  *  E  K  L  F  L  *  R  R  E  Q  L  P  L  *  S  Q  R  E  *  E  E  G  I  E  *  V  E  I  Y  S  *  G  G  H  C  W  E  H  S  I  Q  K  R  R  D  Q  Q  V  S  R  G  R  G  K  E  *  G  K  S  R  C  E  Y  R  G  E  G  G  *  F  G  C  C  *  S  G  *  R  D  F  Y  L  G  C  T  H  F  A  *  Q  R  G  *  E  N  Q  C  G  S  I  E  I  L  E  S  K  G  L  Q  S  E  *  I  F  R  N  A   </first_frame>
            <second_frame>  I  S  H  K  Q  S  N  L  I  Q  L  Q  K  :  L  F  R  G  G  G  D  F  *  D  P  T  L  V  *  L  C  Y  L  S  K  N  M  T  V  E  V  Q  C  E  A  T  Q  V  A  E  V  V  V  P  Q  E  E  L  V  A  A  N  K  V  V  E  E  V  E  V  N  E  K  V  K  E  D  E  E  E  E  S  K  P  N  T  I  E  K  S  S  S  Y  R  E  E  S  N  F  L  S  D  L  K  E  N  E  K  K  A  L  N  E  L  K  S  I  V  E  E  A  I  V  G  N  T  L  F  K  K  E  E  T  N  K  S  L  E  E  E  G  K  N  E  E  N  P  D  A  N  I  E  E  K  E  G  D  L  D  V  V  E  V  D  R  E  I  S  I  W  G  V  P  I  L  P  S  K  G  D  E  K  T  N  V  V  L  L  K  F  L  R  A  R  D  Y  K  V  N  E  S  F  E  M  L  </second_frame>
            <third_frame>   F  H  T  S  K  A  T  S  F  N  S  K  S :   C  L  G  E  E  V  I  S  K  I  Q  H  L  C  N  C  V  I  Y  L  K  T  *  L  L  R  C  N  V  R  Q  L  K  W  L  K  *  L  F  H  K  R  N  *  W  L  L  T  R  L  W  R  R  L  R  *  M  R  R  *  K  K  M  K  K  R  N  P  S  L  I  Q  L  R  K  A  L  L  I  E  K  R  A  T  S  S  L  I  S  K  R  M  R  R  R  H  *  M  S  *  N  L  *  L  R  R  P  L  L  G  T  L  Y  S  K  K  K  R  P  T  S  L  *  R  K  R  E  R  M  R  K  I  P  M  R  I  *  R  R  R  R  V  I  W  M  L  L  K  W  I  E  R  F  L  F  G  V  Y  P  F  C  L  A  K  G  M  R  K  P  M  W  F  Y  *  N  S  *  E  Q  G  I  T  K  *  M  N  L  S  K  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38517" stop="37990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCYLSKNMTVEVQCEATQVAEVVVPQEELVAANKVVEEVEVNEKVKEDEEEESKPNTIEKSSSYREESNFLSDLKENEKKALNELKSIVEEAIVGNTLFKKEETNKSLEEEGKNEENPDANIEEKEGDLDVVEVDREISIWGVPILPSKGDEKTNVVLLKFLRARDYKVNESFEML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="47311" PGL_stop="40850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47311" e_stop="47241"/>
            <exon e_start="47126" e_stop="47046"/>
            <exon e_start="45069" e_stop="45004"/>
            <exon e_start="44924" e_stop="44808"/>
            <exon e_start="44694" e_stop="44643"/>
            <exon e_start="44541" e_stop="44456"/>
            <exon e_start="42708" e_stop="42648"/>
            <exon e_start="41436" e_stop="41331"/>
            <exon e_start="41220" e_stop="41173"/>
            <exon e_start="41042" e_stop="40850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.010" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.580" e_score="0.953"/>
          <exon-intron don_prob="0.963" acc_prob="0.000" e_score="0.875"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47311" e_stop="47241" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="47240" i_stop="47127" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47126" e_stop="47046" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47045" i_stop="45070" i_length="1976"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45069" e_stop="45004" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45003" i_stop="44925" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44924" e_stop="44808" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.010">
            <gDNA_intron_boundary i_start="44807" i_stop="44695" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44694" e_stop="44643" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44642" i_stop="44542" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44541" e_stop="44456" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44455" i_stop="42709" i_length="1747"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42708" e_stop="42648" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42647" i_stop="41437" i_length="1211"/>
          </intron>
          <exon e_serial="8" e_score="0.953">
            <gDNA_exon_boundary e_start="41436" e_stop="41331" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.580">
            <gDNA_intron_boundary i_start="41330" i_stop="41221" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="0.875">
            <gDNA_exon_boundary e_start="41220" e_stop="41173" e_length="48"/>
          </exon>
          <intron i_serial="9" don_prob="0.963" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41172" i_stop="41043" i_length="130"/>
          </intron>
          <exon e_serial="10" e_score="0.953">
            <gDNA_exon_boundary e_start="41042" e_stop="40850" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47311" stop="47241"/>
              <exon start="47126" stop="47046"/>
              <exon start="45069" stop="45004"/>
              <exon start="44924" stop="44808"/>
              <exon start="44694" stop="44643"/>
              <exon start="44541" stop="44456"/>
              <exon start="42708" stop="42648"/>
              <exon start="41436" stop="41331"/>
              <exon start="41220" stop="41212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41358" stop="41331"/>
              <exon start="41220" stop="41173"/>
              <exon start="41042" stop="40850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604709" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATG : ATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAG : GAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATT : GTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAG : ACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAG : GCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAG : GTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAG : GTACTTGTTAATCTGGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCACAAAGTTTTTAGTCTTAAGAG : ATATCTTTCCAACATTACTTGACCCTCTCCTCGAGACTTTATGCATCT : GTGACAGGTTGGTTGATGAAATGTTTCATTGTTTACTTGGAATGAAGGTTCTTTGTACATAGCATATTTACCATACAAGGTACCTTATTATAAAGATGCTTGGAGGAATGAAATGCAATTGGCTTGGCCACAGGTTTGGGAGATTTGAATTTGTTATAATGTATATTTGATATTTTCATCTATTATTTGTTTC</gDNA_template>
            <first_frame> E  I  *  Q  G  S  *  V  S  L  T  W  K  A  S  K  T  Q  E  T  W  R  S  * :   S  S  L  P  S  L  I  D  G  M  V  C  S  S  A  A  S  I  G  L  L  R  K  G  F  G  R :   R  R  V  L  I  R  Y  Y  M  D  W  M  M  *  E  K  Q  M  R  S  S  L :   *  K  V  K  *  I  S  F  Q  W  K  K  L  D  F  L  T  V  S  V  F  L  M  V  H  H  R  A  S  H  P  K  N  C  Y  H  W  K  R :   Q  D  T  R  F  S  Y  L  W  N  C  N  E  C  L  E  K  :  A  S  R  I  V  L  A  T  D  G  D  L  P  G  Q  A  L  A  E  E  L  A  R  R  L  G  K  E  R :   C  W  Q  V  C  W  P  K  K  N  E  L  S  S  Y  K  D  A  N  E  :  V  L  V  N  L  G  R  E  A  L  K  E  A  I  E  C  A  V  P  Y  E  M  Q  N  L  N  *  S  T  K  F  L  V  L  R   : D  I  F  P  T  L  L  D  P  L  L  E  T  L  C  I   : C  D  R  L  V  D  E  M  F  H  C  L  L  G  M  K  V  L  C  T  *  H  I  Y  H  T  R  Y  L  I  I  K  M  L  G  G  M  K  C  N  W  L  G  H  R  F  G  R  F  E  F  V  I  M  Y  I  *  Y  F  H  L  L  F  V   </first_frame>
            <second_frame>  K  Y  D  K  V  H  K  S  H  *  L  G  K  Q  V  K  L  K  K  H  G  D  H   : D  H  H  C  L  H  L  *  T  E  W  Y  A  H  R  L  Q  V  *  D  S  *  E  K  V  L  A   : G  E  G  C  *  *  G  T  I  W  T  G  *  C  K  R  S  R  *  D  H  H   : C  R  R  *  N  R  *  A  F  S  G  R  S  W  I  S  *  L  C  Q  C  S  *  W  C  T  T  G  H  R  I  Q  R  T  A  T  T  G  R   : D  R  I  P  D  F  H  T  C  G  T  A  M  S  A  W  R  R :   R  P  G  L  C  W  Q  L  M  V  I  Y  Q  A  K  H  W  L  K  S  L  P  A  V  W  G  K  K   : G  V  G  K  Y  V  G  R  K  R  M  S  *  A  V  I  K  M  Q  M  R :   Y  L  L  I  W  E  E  K  L  *  K  K  R  L  N  V  P  C  H  M  K  C  R  I  *  T  N  P  Q  S  F  *  S  *  E  :  I  S  F  Q  H  Y  L  T  L  S  S  R  L  Y  A  S  :  V  T  G  W  L  M  K  C  F  I  V  Y  L  E  *  R  F  F  V  H  S  I  F  T  I  Q  G  T  L  L  *  R  C  L  E  E  *  N  A  I  G  L  A  T  G  L  G  D  L  N  L  L  *  C  I  F  D  I  F  I  Y  Y  L  F  </second_frame>
            <third_frame>   N  M  T  R  F  I  S  L  T  N  L  E  S  K  *  N  S  R  N  M  E  I  M  :  I  I  I  A  F  T  Y  R  R  N  G  M  L  I  G  C  K  Y  R  T  L  E  K  R  F  W  Q  :  E  K  G  A  D  K  V  L  Y  G  L  D  D  V  R  E  A  D  E  I  I  I  :  V  E  G  E  I  D  K  L  S  V  E  E  A  G  F  P  N  C  V  S  V  P  N  G  A  P  Q  G  I  A  S  K  E  L  L  P  L  E  E  :  T  G  Y  Q  I  F  I  P  V  E  L  Q  *  V  L  G  E   : G  V  P  D  C  A  G  N  *  W  *  F  T  R  P  S  I  G  *  R  A  C  P  P  S  G  E  R  K  :  V  L  A  S  M  L  A  E  K  E  *  V  K  Q  L  *  R  C  K  *   : G  T  C  *  S  G  K  R  S  S  E  R  S  D  *  M  C  R  A  I  *  N  A  E  F  E  L  I  H  K  V  F  S  L  K  R :   Y  L  S  N  I  T  *  P  S  P  R  D  F  M  H  L :   *  Q  V  G  *  *  N  V  S  L  F  T  W  N  E  G  S  L  Y  I  A  Y  L  P  Y  K  V  P  Y  Y  K  D  A  W  R  N  E  M  Q  L  A  W  P  Q  V  W  E  I  *  I  C  Y  N  V  Y  L  I  F  S  S  I  I  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44908" stop="44808"/>
                    <exon start="44694" stop="44643"/>
                    <exon start="44541" stop="44456"/>
                    <exon start="42708" stop="42648"/>
                    <exon start="41436" stop="41356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFQWKKLDFLTVSVFLMVHHRASHPKNCYHWKRQDTRFSYLWNCNECLEKASRIVLATDGDLPGQALAEELARRLGKERCWQVCWPKKNELSSYKDANEVLVNLGREALKEAIECAVPYEMQNLN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47264" stop="47241"/>
                    <exon start="47126" stop="47046"/>
                    <exon start="45069" stop="45004"/>
                    <exon start="44924" stop="44808"/>
                    <exon start="44694" stop="44656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRNMEIMIIIAFTYRRNGMLIGCKYRTLEKRFWQEKGADKVLYGLDDVREADEIIIVEGEIDKLSVEEAGFPNCVSVPNGAPQGIASKELLPLEETGYQIFIPVELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50483" PGL_stop="47909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50483" e_stop="50331"/>
            <exon e_start="49922" e_stop="49795"/>
            <exon e_start="49212" e_stop="49157"/>
            <exon e_start="49075" e_stop="49024"/>
            <exon e_start="48932" e_stop="48833"/>
            <exon e_start="48009" e_stop="47909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.424" acc_prob="0.967" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="50483" e_stop="50331" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50330" i_stop="49923" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49922" e_stop="49795" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49794" i_stop="49213" i_length="582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49212" e_stop="49157" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.775">
            <gDNA_intron_boundary i_start="49156" i_stop="49076" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49075" e_stop="49024" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49023" i_stop="48933" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="48932" e_stop="48833" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.424" acc_prob="0.967">
            <gDNA_intron_boundary i_start="48832" i_stop="48010" i_length="823"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48009" e_stop="47909" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50483" stop="50331"/>
              <exon start="49922" stop="49795"/>
              <exon start="49212" stop="49157"/>
              <exon start="49075" stop="49024"/>
              <exon start="48932" stop="48833"/>
              <exon start="48009" stop="47909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGCTCTCTTAAAACTCTTGAAATGCTTAATGGCTTGGCGTCAACTCTCTTTAGAGCTCGTCCTGTTATACTCTACACTTTCATCTCAAGATTTTCGCCTAACAGTCATGGTTTTCTTACTATTACTCCTACTAGGCTCTTCACACCTGCAG : CTAGTTTGAGGAGAGATGAAAATAAGGAGGTGGATGATTATGCTGAACTGAAGGAGAAAGTGGAGAATTTTGGTATATGCTGCAATTCTGTTACTCCTGAAGAATACACAAGATTAATGTGTCCCAAG : TGTAAAGGTGGTCGGTCAATGGAAAAGAGTTTATCATTTCATATGTCCTCGAAAAG : GAATTCTGCATTATGGAGGTGTTTCAATATTGACTGTGGATGGGCAGGCCAG : ATCCCACACAATAGTGCGGCATCTGATGGGGTCCATCAACGTGGCAGAATAAATTTTCCTCGGATACTTACAGAGGAAAGCTTGAACTTAGAACCATTAG : CTGGCTGCATATTTTTCTAAGAGGATGATATCAATGAATACTTTGAAGAGAAATCATGTCATGCAAATGGCTGGTGATCAGGTCAGACAATATTATGGTTT</gDNA_template>
            <first_frame> R  A  L  L  K  L  L  K  C  L  M  A  W  R  Q  L  S  L  E  L  V  L  L  Y  S  T  L  S  S  Q  D  F  R  L  T  V  M  V  F  L  L  L  L  L  L  G  S  S  H  L  Q  :  L  V  *  G  E  M  K  I  R  R  W  M  I  M  L  N  *  R  R  K  W  R  I  L  V  Y  A  A  I  L  L  L  L  K  N  T  Q  D  *  C  V  P  S :   V  K  V  V  G  Q  W  K  R  V  Y  H  F  I  C  P  R  K   : G  I  L  H  Y  G  G  V  S  I  L  T  V  D  G  Q  A  R :   S  H  T  I  V  R  H  L  M  G  S  I  N  V  A  E  *  I  F  L  G  Y  L  Q  R  K  A  *  T  *  N  H  *  :  L  A  A  Y  F  S  K  R  M  I  S  M  N  T  L  K  R  N  H  V  M  Q  M  A  G  D  Q  V  R  Q  Y  Y  G   </first_frame>
            <second_frame>  E  L  S  *  N  S  *  N  A  *  W  L  G  V  N  S  L  *  S  S  S  C  Y  T  L  H  F  H  L  K  I  F  A  *  Q  S  W  F  S  Y  Y  Y  S  Y  *  A  L  H  T  C  S :   *  F  E  E  R  *  K  *  G  G  G  *  L  C  *  T  E  G  E  S  G  E  F  W  Y  M  L  Q  F  C  Y  S  *  R  I  H  K  I  N  V  S  Q   : V  *  R  W  S  V  N  G  K  E  F  I  I  S  Y  V  L  E  K  :  E  F  C  I  M  E  V  F  Q  Y  *  L  W  M  G  R  P   : D  P  T  Q  *  C  G  I  *  W  G  P  S  T  W  Q  N  K  F  S  S  D  T  Y  R  G  K  L  E  L  R  T  I  S :   W  L  H  I  F  L  R  G  *  Y  Q  *  I  L  *  R  E  I  M  S  C  K  W  L  V  I  R  S  D  N  I  M  V  </second_frame>
            <third_frame>   S  S  L  K  T  L  E  M  L  N  G  L  A  S  T  L  F  R  A  R  P  V  I  L  Y  T  F  I  S  R  F  S  P  N  S  H  G  F  L  T  I  T  P  T  R  L  F  T  P  A   : A  S  L  R  R  D  E  N  K  E  V  D  D  Y  A  E  L  K  E  K  V  E  N  F  G  I  C  C  N  S  V  T  P  E  E  Y  T  R  L  M  C  P  K  :  C  K  G  G  R  S  M  E  K  S  L  S  F  H  M  S  S  K  R :   N  S  A  L  W  R  C  F  N  I  D  C  G  W  A  G  Q  :  I  P  H  N  S  A  A  S  D  G  V  H  Q  R  G  R  I  N  F  P  R  I  L  T  E  E  S  L  N  L  E  P  L   : A  G  C  I  F  F  *  E  D  D  I  N  E  Y  F  E  E  K  S  C  H  A  N  G  W  *  S  G  Q  T  I  L  W  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50481" stop="50331"/>
                    <exon start="49922" stop="49795"/>
                    <exon start="49212" stop="49157"/>
                    <exon start="49075" stop="49024"/>
                    <exon start="48932" stop="48833"/>
                    <exon start="48009" stop="47990"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLKTLEMLNGLASTLFRARPVILYTFISRFSPNSHGFLTITPTRLFTPAASLRRDENKEVDDYAELKEKVENFGICCNSVTPEEYTRLMCPKCKGGRSMEKSLSFHMSSKRNSALWRCFNIDCGWAGQIPHNSAASDGVHQRGRINFPRILTEESLNLEPLAGCIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51356" PGL_stop="52248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51356" e_stop="52248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="51356" e_stop="52248" e_length="893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="52248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGCAAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCCATACGATTCCC</gDNA_template>
            <first_frame> Y  A  K  *  K  P  Y  L  L  Y  T  S  D  I  N  S  S  L  I  L  L  S  V  G  K  N  V  S  K  Q  R  S  S  E  G  R  N  E  M  S  Y  V  V  Y  N  L  M  T  L  L  A  R  S  P  L  Q  E  L  A  I  M  C  S  P  C  M  E  I  Y  Q  S  F  A  F  A  E  A  R  L  H  L  Q  S  F  S  *  D  F  T  F  L  C  Q  *  *  H  L  H  P  C  Y  S  S  F  S  F  H  H  H  V  W  T  F  *  G  L  H  P  R  S  R  F  H  H  F  *  S  C  F  Q  F  V  D  N  V  L  L  H  L  V  Q  Q  L  S  L  Q  S  L  D  P  Y  L  G  L  D  L  N  *  I  Y  R  S  F  H  *  K  E  L  A  D  P  F  *  P  E  D  F  E  R  A  V  V  G  V  V  *  M  M  D  A  F  P  L  V  D  H  L  W  V  G  Q  V  L  Q  D  P  F  H  P  *  K  G  A  L  L  D  P  S  S  S  Q  I  H  Q  Q  P  E  D  G  C  E  T  S  Y  H  Q  G  I  E  G  Q  M  V  Q  K  V  G  H  P  F  H  K  D  Q  A  *  E  N  H  Q  V  S  L  I  H  K  K  I  H  H  S  *  C  L  G  G  S  P  A  S  Q  G  K  A  W  L  H  E  K  E  L  E  E  A  I  R  F   </first_frame>
            <second_frame>  M  Q  N  K  N  H  I  C  C  T  L  V  T  *  T  Q  V  *  Y  F  Y  Q  L  V  K  M  *  A  S  K  E  V  V  K  A  G  M  R  C  H  M  *  Y  T  I  *  *  H  Y  L  L  G  L  H  Y  K  N  *  P  *  C  V  L  P  V  W  R  Y  I  S  H  L  H  L  Q  R  Q  D  C  I  F  R  V  S  H  K  I  L  L  F  C  A  S  S  S  I  S  I  H  A  I  L  L  F  L  S  I  T  M  S  G  P  S  R  G  F  I  L  A  L  A  F  I  I  S  K  A  V  F  S  L  W  I  M  Y  S  F  I  W  S  N  N  *  A  C  S  L  L  T  P  T  L  V  W  T  *  T  E  S  I  V  P  F  I  K  R  S  S  L  I  L  F  D  P  R  I  L  R  G  R  W  W  G  W  C  K  *  W  M  H  S  H  W  S  T  T  S  G  W  A  R  C  S  R  T  H  S  T  H  E  R  G  P  C  W  T  H  H  H  P  K  S  T  S  S  R  R  T  A  V  K  H  H  I  T  R  E  S  R  A  K  W  S  K  R  S  A  T  H  S  I  R  I  R  H  R  K  T  I  R  C  H  *  S  I  R  K  S  I  T  H  N  A  W  G  E  A  P  H  P  R  E  R  P  G  S  T  K  R  N  *  R  R  P  Y  D  S  </second_frame>
            <third_frame>   C  K  I  K  T  I  F  V  V  H  *  *  H  K  L  K  F  D  T  F  I  S  W  *  K  C  K  Q  A  K  K  *  *  R  P  E  *  D  V  I  C  S  I  Q  S  D  D  T  T  C  *  V  S  T  T  R  T  S  H  N  V  F  S  L  Y  G  D  I  S  V  I  C  I  C  R  G  K  I  A  S  S  E  F  L  I  R  F  Y  F  S  V  P  V  V  A  S  P  S  M  L  F  F  F  F  F  P  S  P  C  L  D  L  L  G  A  S  S  S  L  S  L  S  S  F  L  K  L  F  S  V  C  G  *  C  T  P  S  S  G  P  T  T  E  P  A  V  S  *  P  L  P  W  S  G  P  E  L  N  L  S  F  L  S  L  K  G  A  R  *  S  F  L  T  R  G  F  *  E  G  G  G  G  G  G  V  N  D  G  C  I  P  I  G  R  P  P  L  G  G  P  G  A  P  G  P  I  P  P  M  K  G  G  L  A  G  P  I  I  I  P  N  P  P  A  A  G  G  R  L  *  N  I  I  S  P  G  N  R  G  P  N  G  P  K  G  R  P  P  I  P  *  G  S  G  I  G  K  P  S  G  V  I  D  P  *  E  N  P  S  L  I  M  P  G  G  K  P  R  I  P  G  K  G  L  A  P  R  K  G  T  R  G  G  H  T  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51537" stop="51785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVLPVWRYISHLHLQRQDCIFRVSHKILLFCASSSISIHAILLFLSITMSGPSRGFILALAFIISKAVFSLWIMYSFIWSNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51368" stop="51613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPYLLYTSDINSSLILLSVGKNVSKQRSSEGRNEMSYVVYNLMTLLARSPLQELAIMCSPCMEIYQSFAFAEARLHLQSFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51511" stop="51756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSTTRTSHNVFSLYGDISVICICRGKIASSEFLIRFYFSVPVVASPSMLFFFFFPSPCLDLLGASSSLSLSSFLKLFSVCG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51918" stop="52145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WMHSHWSTTSGWARCSRTHSTHERGPCWTHHHPKSTSSRRTAVKHHITRESRAKWSKRSATHSIRIRHRKTIRCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65808" PGL_stop="64174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65808" e_stop="65313"/>
            <exon e_start="64505" e_stop="64174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.996" e_score="0.996"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="65808" e_stop="65313" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="64505" e_stop="64174" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65808" stop="65313"/>
              <exon start="64505" stop="64174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65713" stop="65313"/>
              <exon start="64505" stop="64229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT : GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCA</gDNA_template>
            <first_frame> *  T  T  K  S  P  A  P  G  L  G  L  E  K  P  W  W  L  H  K  P  Q  I  Q  P  E  I  K  I  D  *  L  H  *  Q  R  R  I  F  S  K  W  M  T  E  K  E  D  *  T  L  I  L  K  V  A  *  I  Q  G  Q  H  T  Q  L  H  L  Y  Q  *  Y  K  Q  V  P  P  Q  M  L  L  L  P  *  F  L  Q  A  A  V  W  G  *  E  V  M  V  H  L  L  V  T  V  E  V  S  G  R  L  F  V  G  I  G  C  G  P  C  V  *  R  V  M  L  V  V  S  F  T  S  M  I  S  P  G  C  P  F  A  G  S  L  D  S  M  E  S  A  V  N  K  I  V  F  I  S  T  P  M  R  I  L  K  N  V  T   : C  L  N  *  D  F  V  R  M  V  L  I  A  D  I  D  M  Q  R  C  L  D  L  H  L  Q  W  *  K  F  F  R  K  F  R  I  *  H  P  M  V  T  R  T  G  F  F  K  I  G  I  Q  I  I  Q  L  R  Q  T  N  L  K  F  R  K  Y  L  M  *  *  I  K  Q  *  N  L  Q  Q  R  N  H  P  L  A  N  R  T  S  R  I  N  N  K  F  N  S  L  N  I  R  G  P  Q  L  K  H  K  P  F  P  A </first_frame>
            <second_frame>  K  Q  P  K  A  L  P  L  G  *  D  L  K  N  L  G  G  S  I  N  P  K  F  N  Q  K  S  R  L  I  D  Y  T  N  R  E  E  S  S  Q  N  G  *  R  R  R  R  T  K  L  *  F  *  R  W  L  R  Y  R  A  N  T  P  N  C  I  C  T  S  N  T  S  R  S  R  P  K  C  F  C  C  R  S  S  S  R  R  R  C  G  A  R  R  *  W  F  I  C  W  *  P  *  K  F  Q  A  D  C  L  *  A  L  A  A  V  L  V  Y  E  G  *  C  L  W  F  P  S  P  V  *  *  V  P  D  A  R  L  Q  V  L  *  T  L  W  R  V  P  *  T  R  L  C  L  *  A  H  Q  *  G  Y  *  R  M  *  H  :  V  *  I  R  I  L  S  E  W  S  *  L  P  I  *  T  C  K  D  A  W  T  S  T  S  S  G  R  S  S  S  E  N  S  E  F  D  I  P  W  L  L  E  Q  V  F  S  K  S  E  Y  K  L  F  N  S  G  R  Q  I  S  N  S  A  S  T  *  C  N  E  S  S  S  E  I  Y  S  N  G  T  T  H  W  P  T  A  P  A  A  S  T  T  S  S  T  A  S  T  S  G  A  P  N  S  N  T  N  P  S  R   </second_frame>
            <third_frame>   N  N  Q  K  P  C  P  W  V  R  T  *  K  T  L  V  A  P  *  T  P  N  S  T  R  N  Q  D  *  L  T  T  L  T  E  K  N  L  L  K  M  D  D  G  E  G  G  L  N  F  D  F  E  G  G  L  D  T  G  P  T  H  P  T  A  S  V  P  V  I  Q  A  G  P  A  P  N  A  S  V  A  V  V  P  P  G  G  G  V  G  L  G  G  D  G  S  F  V  G  N  R  R  S  F  R  Q  T  V  C  R  H  W  L  R  S  L  C  M  K  G  D  A  C  G  F  L  H  Q  Y  D  K  S  R  M  P  V  C  R  F  F  R  L  Y  G  E  C  R  E  Q  D  C  V  Y  K  H  T  N  E  D  I  K  E  C  N  M :   F  K  L  G  F  C  P  N  G  P  D  C  R  Y  R  H  A  K  M  P  G  P  P  P  P  V  V  E  V  L  Q  K  I  Q  N  L  T  S  H  G  Y  S  N  R  F  F  Q  N  R  N  T  N  Y  S  T  Q  A  D  K  S  Q  I  P  Q  V  P  N  V  M  N  Q  A  V  K  S  T  A  T  E  P  P  I  G  Q  P  H  Q  P  H  Q  Q  Q  V  Q  Q  P  Q  H  Q  G  P  P  T  Q  T  Q  T  L  P  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65719" stop="65313"/>
                    <exon start="64505" stop="64175"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTLTEKNLLKMDDGEGGLNFDFEGGLDTGPTHPTASVPVIQAGPAPNASVAVVPPGGGVGLGGDGSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMFKLGFCPNGPDCRYRHAKMPGPPPPVVEVLQKIQNLTSHGYSNRFFQNRNTNYSTQADKSQIPQVPNVMNQAVKSTATEPPIGQPHQPHQQQVQQPQHQGPPTQTQTLPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="72819" PGL_stop="67761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72819" e_stop="72476"/>
            <exon e_start="71842" e_stop="71670"/>
            <exon e_start="68978" e_stop="68833"/>
            <exon e_start="68097" e_stop="67761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="72819" e_stop="72476" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71842" e_stop="71670" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68978" e_stop="68833" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.990">
            <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="68097" e_stop="67761" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72819" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68833"/>
              <exon start="68097" stop="67761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG : GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA : GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG : AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGA</gDNA_template>
            <first_frame> N  Q  N  H  *  V  H  S  K  R  G  G  F  Q  N  *  I  C  S  R  N  I  S  G  P  D  R  T  G  P  A  L  P  R  K  R  N  S  G  D  I  T  V  L  I  Q  W  R  I  T  *  L  R  K  S  L  L  G  K  W  R  K  L  S  K  T  *  P  T  L  *  I  L  K  P  *  M  K  L  L  R  W  K  *  L  L  S  L  T  L  V  L  W  S  L  L  Y  S  A  A  S  V  S  P  S  S  L  L  S  S  I  T  L  L  R :   *  M  I  *  Q  R  H  Q  S  L  L  Q  R  C  T  Q  *  W  I  K  I  F  K  Q  T  V  *  E  R  Q  V  V  I  Q  G  T  C  *  E  L  S  V  G  W  I  W  L  R  C  C  S  R  R  L  *  P  Q   : R  G  I  P  *  K  I  Q  H  Q  K  H  I  H  K  C  L  L  H  T  M  D  G  P  S  G  K  L  C  L  Q  E  C  M  P  S  P  P  G  N  S  *  *  S  S  L  M  K  M  :  K  T  P  Q  E  R  R  C  K  I  M  S  P  R  V  I  L  S  F  C  T  L  T  N  S  S  R  Q  E  I  W  V  L  I  G  D  H  E  E  L  D  V  I  M  L  I  H  S  C  D  S  P  L  I  T  Y  M  Y  N  H  L  T  Q  W  S  K  Y  L  I  V  T  N  L  S  *  L  A  G  K  *  K  N  A  L  E  Q  K  T  I  Y  L  H  L  G  R  R  *  A  H  Y  F  L  K  K  K  K  I  Y  H  F  S  L  </first_frame>
            <second_frame>  I  K  I  T  E  C  T  R  R  E  G  D  S  K  I  R  F  V  H  A  I  Y  Q  D  R  T  G  P  D  R  H  Y  H  E  K  G  I  P  A  T  S  R  C  *  F  N  G  E  S  R  S  *  G  K  A  S  *  E  N  G  G  S  F  Q  R  P  S  Q  H  F  K  F  S  N  P  R  *  S  C  *  D  G  S  S  S  F  L  S  R  L  Y  F  G  L  S  S  I  P  L  P  R  Y  R  L  Q  V  C  *  A  R  L  R  C  *   : G  E  *  S  S  R  G  I  K  V  Y  Y  N  V  A  H  N  D  G  S  R  Y  S  S  K  L  C  E  K  G  R  *  S  Y  K  E  L  V  K  S  *  A  W  A  G  Y  G  *  G  V  V  R  G  D  Y  S  L  R  :  G  E  F  L  E  R  S  S  I  K  S  I  Y  T  S  V  C  S  I  P  W  M  G  H  Q  E  S  C  V  C  R  N  V  C  P  P  H  P  A  T  A  D  D  Q  A  *  *  R  * :   R  L  R  K  N  A  D  A  K  L  C  R  L  V  *  Y  C  H  F  V  H  *  Q  T  L  H  V  K  R  F  G  Y  *  L  V  T  M  K  N  W  M  S  *  C  S  F  I  H  V  I  R  P  *  S  L  I  C  I  I  I  *  R  S  G  P  N  I  *  L  *  L  T  Y  L  N  *  Q  G  N  E  K  M  P  *  N  R  K  L  S  I  C  T  W  G  D  V  E  L  I  I  F  *  K  K  R  K  Y  T  T  S  A  * </second_frame>
            <third_frame>   S  K  S  L  S  A  L  E  E  R  G  I  P  K  L  D  L  F  T  Q  Y  I  R  T  G  P  D  R  T  G  I  T  T  K  K  E  F  R  R  H  H  G  A  D  S  M  A  N  H  V  A  E  E  K  P  L  R  K  M  A  E  A  F  K  D  L  A  N  T  L  N  S  Q  T  L  D  E  A  A  K  M  E  V  A  P  F  S  H  A  C  T  L  V  S  P  L  F  R  C  L  G  I  A  F  K  F  A  E  L  D  Y  V  A  K  :  V  N  D  L  A  E  A  S  K  S  I  T  T  L  H  T  M  M  D  Q  D  I  Q  A  N  C  V  R  K  A  G  S  H  T  R  N  L  L  R  V  K  R  G  L  D  M  V  K  V  L  F  E  E  I  I  A  S  E :   G  N  S  L  K  D  P  A  S  K  A  Y  T  Q  V  F  A  P  Y  H  G  W  A  I  R  K  A  V  S  A  G  M  Y  A  L  P  T  R  Q  Q  L  M  I  K  L  N  E  D   : E  D  S  A  R  T  Q  M  Q  N  Y  V  A  S  C  D  T  V  I  L  Y  I  D  K  L  F  T  S  R  D  L  G  T  D  W  *  P  *  R  T  G  C  H  N  A  H  S  F  M  *  F  A  P  N  H  L  Y  V  *  S  F  D  A  V  V  Q  I  F  D  C  N  *  L  I  L  T  S  R  E  M  K  K  C  P  R  T  E  N  Y  L  S  A  L  G  A  T  L  S  S  L  F  F  K  K  K  E  N  I  P  L  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72817" stop="72476"/>
                    <exon start="71842" stop="71670"/>
                    <exon start="68978" stop="68833"/>
                    <exon start="68097" stop="67991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSLSALEERGIPKLDLFTQYIRTGPDRTGITTKKEFRRHHGADSMANHVAEEKPLRKMAEAFKDLANTLNSQTLDEAAKMEVAPFSHACTLVSPLFRCLGIAFKFAELDYVAKVNDLAEASKSITTLHTMMDQDIQANCVRKAGSHTRNLLRVKRGLDMVKVLFEEIIASEGNSLKDPASKAYTQVFAPYHGWAIRKAVSAGMYALPTRQQLMIKLNEDEDSARTQMQNYVASCDTVILYIDKLFTSRDLGTDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83443" PGL_stop="84427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83443" e_stop="83520"/>
            <exon e_start="84124" e_stop="84427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.414" acc_prob="0.913" e_score="0.987"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="83443" e_stop="83520" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.414" acc_prob="0.913">
            <gDNA_intron_boundary i_start="83521" i_stop="84123" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="84124" e_stop="84427" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83443" stop="83520"/>
              <exon start="84124" stop="84427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGAACAAAAATGGTTTAGGTAGTTGTTGAACTTCTTTTTTGCTATCTTCTTCACCAGATCTAGGCTTTAACTAG : ATAATTGTTCTTGAAGAATTGGTTGCAAATGGATGACTCAGTTTTAAAATCCAATGAAGACTCAGTGGAGGAGAACCAAAGTCCAGAGATAATAGAGAAGCCATCTCCGCTGCAGGATTTGGTTGAACATCCACAAAGTTCAGAGTCACTAAAGCAATCATCAGCAGAGAGTGTGAAAAAATCAAGGACAGTGAGACCAAGTTTAACAACTCAAAATGGGGCAACAAATGCTGGGACTGTGAAGAAGCGAACTGGAATACCAGATGGCACTGATTTTACTCTCAGAGGTGTCAAGTCATCTCTG</gDNA_template>
            <first_frame> K  R  N  K  N  G  L  G  S  C  *  T  S  F  L  L  S  S  S  P  D  L  G  F  N  *  :  I  I  V  L  E  E  L  V  A  N  G  *  L  S  F  K  I  Q  *  R  L  S  G  G  E  P  K  S  R  D  N  R  E  A  I  S  A  A  G  F  G  *  T  S  T  K  F  R  V  T  K  A  I  I  S  R  E  C  E  K  I  K  D  S  E  T  K  F  N  N  S  K  W  G  N  K  C  W  D  C  E  E  A  N  W  N  T  R  W  H  *  F  Y  S  Q  R  C  Q  V  I  S  </first_frame>
            <second_frame>  K  G  T  K  M  V  *  V  V  V  E  L  L  F  C  Y  L  L  H  Q  I  *  A  L  T  R :   *  L  F  L  K  N  W  L  Q  M  D  D  S  V  L  K  S  N  E  D  S  V  E  E  N  Q  S  P  E  I  I  E  K  P  S  P  L  Q  D  L  V  E  H  P  Q  S  S  E  S  L  K  Q  S  S  A  E  S  V  K  K  S  R  T  V  R  P  S  L  T  T  Q  N  G  A  T  N  A  G  T  V  K  K  R  T  G  I  P  D  G  T  D  F  T  L  R  G  V  K  S  S  L </second_frame>
            <third_frame>   K  E  Q  K  W  F  R  *  L  L  N  F  F  F  A  I  F  F  T  R  S  R  L  *  L   : D  N  C  S  *  R  I  G  C  K  W  M  T  Q  F  *  N  P  M  K  T  Q  W  R  R  T  K  V  Q  R  *  *  R  S  H  L  R  C  R  I  W  L  N  I  H  K  V  Q  S  H  *  S  N  H  Q  Q  R  V  *  K  N  Q  G  Q  *  D  Q  V  *  Q  L  K  M  G  Q  Q  M  L  G  L  *  R  S  E  L  E  Y  Q  M  A  L  I  L  L  S  E  V  S  S  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84128" stop="84427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLKNWLQMDDSVLKSNEDSVEENQSPEIIEKPSPLQDLVEHPQSSESLKQSSAESVKKSRTVRPSLTTQNGATNAGTVKKRTGIPDGTDFTLRGVKSSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94817" PGL_stop="96325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94817" e_stop="94832"/>
            <exon e_start="94961" e_stop="95078"/>
            <exon e_start="95168" e_stop="95295"/>
            <exon e_start="96226" e_stop="96325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.989" e_score="0.922"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94817" e_stop="94832" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="94833" i_stop="94960" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94961" e_stop="95078" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="95079" i_stop="95167" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="95168" e_stop="95295" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95296" i_stop="96225" i_length="930"/>
          </intron>
          <exon e_serial="4" e_score="0.930">
            <gDNA_exon_boundary e_start="96226" e_stop="96325" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94817" stop="94832"/>
              <exon start="94961" stop="95078"/>
              <exon start="95168" stop="95295"/>
              <exon start="96226" stop="96325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565721" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCAAAATTGCAAAG : GCGTTCCGCATACCTTTAGGAGCTGTTGGTTACTATATTGTTGCAAAATTTACTCCGATGACTCCAGATGGCGAAGCTGGTGAACCAGTCTTTGTCATTTCTGAAAGAGCTGCAGAGA : CTCTTCCACCTAACCTTAACTTTTTATCTCTGACTGGGGATTACGCTGAAGGTGGAATAATGACCGCATCTTATGGTTATATTGGGGGTCATGAGGGAAAAAGTATTTACAATTGGTATCTTCACGAG : GTTGAAAATGGCTTAGGTGCTATGATACCCGAGTTTTCTGGTCTTCTTCAATATCGTATTGCCAAAGATGCAATTGGTAAATTCATATCTTTCAAATGTA</gDNA_template>
            <first_frame> V  Q  N  C  K   : G  V  P  H  T  F  R  S  C  W  L  L  Y  C  C  K  I  Y  S  D  D  S  R  W  R  S  W  *  T  S  L  C  H  F  *  K  S  C  R  D :   S  S  T  *  P  *  L  F  I  S  D  W  G  L  R  *  R  W  N  N  D  R  I  L  W  L  Y  W  G  S  *  G  K  K  Y  L  Q  L  V  S  S  R   : G  *  K  W  L  R  C  Y  D  T  R  V  F  W  S  S  S  I  S  Y  C  Q  R  C  N  W  *  I  H  I  F  Q  M   </first_frame>
            <second_frame>  S  K  I  A  K  :  A  F  R  I  P  L  G  A  V  G  Y  Y  I  V  A  K  F  T  P  M  T  P  D  G  E  A  G  E  P  V  F  V  I  S  E  R  A  A  E   : T  L  P  P  N  L  N  F  L  S  L  T  G  D  Y  A  E  G  G  I  M  T  A  S  Y  G  Y  I  G  G  H  E  G  K  S  I  Y  N  W  Y  L  H  E  :  V  E  N  G  L  G  A  M  I  P  E  F  S  G  L  L  Q  Y  R  I  A  K  D  A  I  G  K  F  I  S  F  K  C  </second_frame>
            <third_frame>   P  K  L  Q  R :   R  S  A  Y  L  *  E  L  L  V  T  I  L  L  Q  N  L  L  R  *  L  Q  M  A  K  L  V  N  Q  S  L  S  F  L  K  E  L  Q  R  :  L  F  H  L  T  L  T  F  Y  L  *  L  G  I  T  L  K  V  E  *  *  P  H  L  M  V  I  L  G  V  M  R  E  K  V  F  T  I  G  I  F  T  R :   L  K  M  A  *  V  L  *  Y  P  S  F  L  V  F  F  N  I  V  L  P  K  M  Q  L  V  N  S  Y  L  S  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94818" stop="94832"/>
                    <exon start="94961" stop="95078"/>
                    <exon start="95168" stop="95295"/>
                    <exon start="96226" stop="96324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIAKAFRIPLGAVGYYIVAKFTPMTPDGEAGEPVFVISERAAETLPPNLNFLSLTGDYAEGGIMTASYGYIGGHEGKSIYNWYLHEVENGLGAMIPEFSGLLQYRIAKDAIGKFISFKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97114" PGL_stop="98109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97114" e_stop="97228"/>
            <exon e_start="97305" e_stop="97473"/>
            <exon e_start="97703" e_stop="97787"/>
            <exon e_start="97877" e_stop="97950"/>
            <exon e_start="98023" e_stop="98109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.489" acc_prob="0.931" e_score="0.983"/>
          <exon-intron don_prob="0.978" acc_prob="0.946" e_score="0.988"/>
          <exon-intron don_prob="0.966" acc_prob="0.942" e_score="0.988"/>
          <exon-intron don_prob="0.277" acc_prob="0.129" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="97114" e_stop="97228" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.489" acc_prob="0.931">
            <gDNA_intron_boundary i_start="97229" i_stop="97304" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="97305" e_stop="97473" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.946">
            <gDNA_intron_boundary i_start="97474" i_stop="97702" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="97703" e_stop="97787" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.942">
            <gDNA_intron_boundary i_start="97788" i_stop="97876" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97877" e_stop="97950" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.277" acc_prob="0.129">
            <gDNA_intron_boundary i_start="97951" i_stop="98022" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98023" e_stop="98109" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97114" stop="97228"/>
              <exon start="97305" stop="97473"/>
              <exon start="97703" stop="97787"/>
              <exon start="97877" stop="97950"/>
              <exon start="98023" stop="98109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG : ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAG : GGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG : GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG : AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCT</gDNA_template>
            <first_frame> S  K  I  A  F  S  T  N  S  R  N  C  S  *  R  H  H  I  K  N  *  E  E  I  L  G  W  *  R  G  K  F  N  L  P  L  V  P   : D  *  F  K  W  N  K  H  R  S  Q  *  *  D  D  I  L  I  Q  A  V  Y  S  *  Y  R  I  F  Y  I  C  I  L  *  T  C  S  K  *  L  G  S  W  S  Y  S  Y  L  G  T  S  W  T  Y  R  S  R :   A  T  D  L  P  F  T  *  I  S  R  I  F  G  *  R  R  T  C  E  L  C  C  F  L  *  W  R  :  G  E  G  R  M  H  T  R  M  V  *  S  E  S  *  W  W  Q  R  Q  N  K  L  *  * :   V  S  G  F  D  S  *  G  C  Q  *  L  Y  R  A  Y  L  Y  S  H  P  Q  R  Y  I  K  R  K   </first_frame>
            <second_frame>  P  R  L  L  S  L  R  I  A  G  T  A  V  E  G  T  T  L  R  I  E  K  K  Y  W  G  G  E  E  G  N  S  I  Y  R  W  F  R  :  T  S  S  S  G  T  N  I  E  V  N  D  E  M  T  S  S  Y  K  L  S  I  H  D  I  G  Y  F  I  S  V  S  C  E  P  V  R  N  D  W  A  R  G  P  I  V  I  S  E  Q  V  G  P  I  V  P   : G  P  P  T  C  H  S  L  E  F  Q  G  S  L  V  E  G  E  R  V  S  F  V  A  S  Y  S  G  G :   E  K  G  E  C  I  H  E  W  F  R  V  N  H  D  G  G  K  D  K  I  S  C  D   : E  F  L  D  L  T  L  E  D  V  S  N  C  I  E  L  I  Y  T  P  I  R  K  D  T  L  K  G  S  </second_frame>
            <third_frame>   Q  D  C  F  L  Y  E  *  P  E  L  Q  L  K  A  P  H  *  E  L  R  R  N  I  G  V  V  K  R  E  I  Q  F  T  A  G  S  G :   L  V  Q  V  E  Q  T  *  K  S  M  M  R  *  H  P  H  T  S  C  L  F  M  I  *  D  I  L  Y  L  Y  P  V  N  L  F  E  M  I  G  L  V  V  L  *  L  S  R  N  K  L  D  L  S  F  Q  :  G  H  R  L  A  I  H  L  N  F  K  D  L  W  L  K  E  N  V  *  A  L  L  L  L  I  V  E   : G  R  R  E  N  A  Y  T  N  G  L  E  *  I  M  M  V  A  K  T  K  *  A  V  M  :  S  F  W  I  *  L  L  R  M  S  V  I  V  *  S  L  F  I  L  P  S  A  K  I  H  *  K  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97115" stop="97228"/>
                    <exon start="97305" stop="97473"/>
                    <exon start="97703" stop="97787"/>
                    <exon start="97877" stop="97950"/>
                    <exon start="98023" stop="98108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRLLSLRIAGTAVEGTTLRIEKKYWGGEEGNSIYRWFRTSSSGTNIEVNDEMTSSYKLSIHDIGYFISVSCEPVRNDWARGPIVISEQVGPIVPGPPTCHSLEFQGSLVEGERVSFVASYSGGEKGECIHEWFRVNHDGGKDKISCDEFLDLTLEDVSNCIELIYTPIRKDTLKGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="117130" PGL_stop="116608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117130" e_stop="116608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="117130" e_stop="116608" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117130" stop="116608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</gDNA_template>
            <first_frame> R  Y  Y  V  S  G  V  T  T  N  A  N  R  N  K  L  I  I  C  I  L  L  I  L  G  S  S  I  A  T  A  A  Y  W  G  L  S  E  K  G  W  I  G  Y  C  F  T  V  P  I  W  V  S  A  T  A  G  I  C  I  F  I  P  Q  A  R  N  P  K  L  W  G  V  P  L  V  P  W  L  P  S  L  S  I  A  I  N  I  F  L  L  G  S  I  D  K  D  S  F  I  R  F  A  G  W  T  G  F  L  L  A  Y  Y  F  F  F  G  L  H  A  S  Y  D  T  A  K  E  F  E  K  S  K  G  W  K  N  N  I  E  E  G  K  G  T  S  N  V  V  V  S  K  D  V  P  I  A  P  G  N  *  I  S  C  V  *  M  I  A  Q  C  Y  V  P  S  </first_frame>
            <second_frame>  V  T  M  *  V  V  *  P  Q  T  Q  T  A  T  S  *  L  Y  A  Y  C  S  S  S  G  P  Q  S  P  Q  L  L  T  G  D  L  V  R  K  D  G  L  D  T  A  S  L  C  L  F  G  F  Q  Q  L  Q  G  F  V  F  S  F  L  R  L  V  I  L  S  F  G  V  C  L  L  C  L  G  C  H  H  Y  R  *  L  S  T  F  S  Y  *  A  R  *  I  K  I  R  S  S  D  L  L  A  G  Q  V  F  F  W  R  I  T  S  F  S  G  C  M  L  L  M  T  Q  Q  R  N  L  K  R  A  K  G  G  R  T  T  L  K  K  E  R  V  L  L  M  W  L  L  A  K  M  F  L  L  L  L  V  T  E  L  V  V  S  K  *  *  H  N  V  T  F  L  A </second_frame>
            <third_frame>   L  L  C  E  W  C  D  H  K  R  K  P  Q  Q  A  N  Y  M  H  I  A  H  P  R  V  L  N  R  H  S  C  L  L  G  T  *  *  E  R  M  D  W  I  L  L  H  C  A  Y  L  G  F  S  N  C  R  D  L  Y  F  H  S  S  G  S  *  S  *  A  L  G  C  A  S  C  A  L  V  A  I  I  I  D  S  Y  Q  H  F  P  T  R  L  D  R  *  R  F  V  H  Q  I  C  W  L  D  R  F  S  F  G  V  L  L  L  F  R  A  A  C  F  L  *  H  S  K  G  I  *  K  E  Q  R  V  E  E  Q  H  *  R  R  K  G  Y  F  *  C  G  C  *  Q  R  C  S  Y  C  S  W  *  L  N  *  L  C  L  N  D  S  T  M  L  R  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117130" stop="116651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYYVSGVTTNANRNKLIICILLILGSSIATAAYWGLSEKGWIGYCFTVPIWVSATAGICIFIPQARNPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFAGWTGFLLAYYFFFGLHASYDTAKEFEKSKGWKNNIEEGKGTSNVVVSKDVPIAPGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="121690" PGL_stop="117479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121690" e_stop="121675"/>
            <exon e_start="121184" e_stop="120754"/>
            <exon e_start="118122" e_stop="117479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121690" e_stop="121675" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121674" i_stop="121185" i_length="490"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121184" e_stop="120754" e_length="431"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="120753" i_stop="118123" i_length="2631"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="118122" e_stop="117479" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121690" stop="121675"/>
              <exon start="121184" stop="120754"/>
              <exon start="118122" stop="117826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117903" stop="117479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAATCAATCACCAG : AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAG : GTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACTTCAAGCCTGAAAAATTCCTCATCACGGCTCATGGTTTAGCTAAGGGCTACAACCAACTTGACCCAATCGCTGTTGCGGTCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTA</gDNA_template>
            <first_frame> G  N  Q  S  P   : E  S  E  R  T  W  G  *  K  V  K  Y  R  N  Q  E  E  E  S  G  E  E  I  V  C  A  Q  K  T  I  F  C  R  R  N  R  S  R  A  G  E  I  T  R  M  R  *  G  K  L  R  R  G  *  S  N  G  R  *  R  D  R  M  M  K  Q  S  W  R  R  S  H  G  V  T  M  K  *  R  R  H  *  H  G  G  T  *  Y  G  L  G  W  E  R  *  L  E  Q  E  S  S  Y  *  R  G  L  K  R  A  R  T  L  A  L  L  L  Y  C  H  M  Q  F  P  A  S  P  P  C  S  L  S  S  V  T  L  S  L  P  L  R  S  L  L  Q  :  V  V  H  L  P  T  *  G  W  S  L  V  T  L  W  P  S  L  L  L  E  T  S  F  L  N  M  *  L  V  V  L  Q  W  L  V  H  G  P  H  T  L  Q  L  C  *  T  S  S  L  K  N  S  S  S  R  L  M  V  *  L  R  A  T  T  N  L  T  Q  S  L  L  R  S  A  S  S  S  A  S  L  P  F  V  V  R  K  A  L  L  V  S  T  M  L  P  R  S  F  T  L  W  *  L  F  S  S  S  S  V  A  *  S  R  Q  I  P  R  T  T  P  P  L  R  H  L  E  F  V  A  F  S  K  L  L  R  C  C  S  L  L  M  L  V  L  M  L  F  R  L  W  L  R  K  L  R  I  Q  L  E  I  S  P  L  A  *  L  D  L  W  *  S  P  L  L  C  T  V  Y  W  L  *  H  S  V  L  C  S  L  I  R  A  L  I  L  M  L  R  F  L  W  R  S  K  Q  L  D  G  V  G  R  N  I  L   </first_frame>
            <second_frame>  V  I  N  H  Q  :  K  V  K  E  H  G  D  R  R  *  S  T  G  I  R  R  R  N  Q  A  K  K  L  C  V  H  K  R  R  F  S  A  G  G  I  V  Q  E  L  G  K  L  H  E  C  A  E  A  N  S  D  E  V  N  R  T  G  V  D  A  I  E  *  *  S  R  A  G  G  E  V  T  E  S  P  *  N  E  E  D  I  D  M  V  G  P  N  M  V  W  D  G  S  G  D  W  S  R  N  L  R  T  D  G  A  *  S  E  P  G  R  W  P  C  C  C  T  V  I  C  S  F  R  R  L  R  L  A  L  C  L  L  L  H  *  V  C  R  *  D  P  C  C  R :   W  F  I  C  L  L  E  G  G  A  W  *  L  C  G  L  H  C  C  W  K  H  P  S  *  I  C  D  W  W  C  C  S  G  S  F  M  D  L  I  L  C  N  F  V  E  L  Q  A  *  K  I  P  H  H  G  S  W  F  S  *  G  L  Q  P  T  *  P  N  R  C  C  G  L  L  H  H  L  H  H  C  H  S  *  Y  E  R  L  F  S  S  Q  L  C  C  L  D  H  S  H  C  G  D  C  F  H  H  H  L  W  P  N  Q  G  R  Y  Q  E  L  H  P  L  Y  A  I  W  S  S  W  H  F  Q  S  F  C  G  V  V  L  C  L  C  W  F  *  C  C  F  D  Y  G  *  G  N  *  G  S  S  S  R  Y  P  H  W  P  S  W  I  Y  G  D  H  H  Y  C  V  L  F  I  G  Y  N  T  L  S  Y  A  A  L  S  E  H  *  S  *  C  S  V  F  C  G  V  Q  S  S  W  M  E  L  G  A  I  Y  C  </second_frame>
            <third_frame>   *  S  I  T  R :   K  *  K  N  M  G  I  E  G  E  V  P  E  S  G  G  G  I  R  R  R  N  C  V  C  T  K  D  D  F  L  P  E  E  S  F  K  S  W  G  N  Y  T  N  A  L  R  Q  T  P  T  R  L  I  E  R  A  L  T  R  S  N  D  E  A  E  L  E  A  K  S  R  S  H  H  E  M  K  K  T  L  T  W  W  D  L  I  W  F  G  M  G  A  V  I  G  A  G  I  F  V  L  T  G  L  E  A  S  Q  D  A  G  P  A  V  V  L  S  Y  A  V  S  G  V  S  A  L  L  S  V  F  C  Y  T  E  F  A  V  E  I  P  V  A   : G  G  S  F  A  Y  L  R  V  E  L  G  D  F  V  A  F  I  A  A  G  N  I  L  L  E  Y  V  I  G  G  A  A  V  A  R  S  W  T  S  Y  F  A  T  L  L  N  F  K  P  E  K  F  L  I  T  A  H  G  L  A  K  G  Y  N  Q  L  D  P  I  A  V  A  V  C  F  I  I  C  I  I  A  I  R  S  T  K  G  S  S  R  L  N  Y  V  A  S  I  I  H  I  V  V  I  V  F  I  I  I  C  G  L  I  K  A  D  T  K  N  Y  T  P  F  T  P  F  G  V  R  G  I  F  K  A  S  A  V  L  F  F  A  Y  V  G  F  D  A  V  S  T  M  A  E  E  T  K  D  P  A  R  D  I  P  I  G  L  V  G  S  M  V  I  T  T  T  V  Y  C  L  L  A  I  T  L  C  L  M  Q  P  Y  Q  S  I  D  P  N  A  P  F  S  V  A  F  K  A  V  G  W  S  W  A  Q  Y  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121177" stop="120754"/>
                    <exon start="118122" stop="117479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMGIEGEVPESGGGIRRRNCVCTKDDFLPEESFKSWGNYTNALRQTPTRLIERALTRSNDEAELEAKSRSHHEMKKTLTWWDLIWFGMGAVIGAGIFVLTGLEASQDAGPAVVLSYAVSGVSALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVARSWTSYFATLLNFKPEKFLITAHGLAKGYNQLDPIAVAVCFIICIIAIRSTKGSSRLNYVASIIHIVVIVFIIICGLIKADTKNYTPFTPFGVRGIFKASAVLFFAYVGFDAVSTMAEETKDPARDIPIGLVGSMVITTTVYCLLAITLCLMQPYQSIDPNAPFSVAFKAVGWSWAQYIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="140503" PGL_stop="124327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140503" e_stop="140250"/>
            <exon e_start="138294" e_stop="138148"/>
            <exon e_start="136112" e_stop="136034"/>
            <exon e_start="124678" e_stop="124327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="140503" e_stop="140250" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="140249" i_stop="138295" i_length="1955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138294" e_stop="138148" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138147" i_stop="136113" i_length="2035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136112" e_stop="136034" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136033" i_stop="124679" i_length="11355"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="124678" e_stop="124327" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140503" stop="140250"/>
              <exon start="138294" stop="138148"/>
              <exon start="136112" stop="136034"/>
              <exon start="124678" stop="124327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA : GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG : TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG : CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGC</gDNA_template>
            <first_frame> T  E  S  Q  L  K  N  P  F  S  R  G  *  H  F  P  V  W  V  V  Q  T  *  L  L  *  I  R  E  A  M  E  G  G  E  E  I  E  I  A  E  E  N  E  F  P  S  V  I  G  R  K  Y  S  P  V  V  A  H  D  N  D  S  A  V  I  E  M  S  S  V  R  P  G  S  S  S  S  L  P  N  H  D  L  K :   N  V  K  V  G  V  H  P  N  M  A  S  E  E  R  D  E  S  L  S  N  H  S  S  N  G  P  Q  R  E  S  K  L  E  L  F  G  F  D  S  L  V  N  I  L  G  L  K  S :   M  T  G  D  Q  I  P  A  P  S  S  P  R  D  G  E  D  I  T  L  T  L  E  Q  P  K  :  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  P  F  F  F  Y  C  P  S  Q  P  R  G  V  Y  N  C  I  I  L  Y  I  K  G  H  T  G  P  K  F  C  *  </first_frame>
            <second_frame>  L  N  R  S  L  K  T  P  F  L  A  V  N  T  F  R  F  G  *  F  R  L  D  C  F  E  F  G  R  Q  W  K  V  E  K  R  L  R  L  R  R  K  M  S  S  L  Q  L  L  D  E  N  T  V  Q  W  W  R  M  T  M  I  V  Q  L  L  R  C  L  L  F  V  P  D  L  P  L  L  S  P  T  T  I  S   : R  T  S  K  *  V  S  I  Q  I  W  H  L  K  K  E  T  S  H  Y  P  I  I  V  A  M  V  L  K  E  N  P  N  W  N  Y  L  A  L  I  L  *  *  I  F  *  V  S  R   : V  *  Q  G  I  K  F  P  H  R  L  V  Q  E  M  V  R  I  *  L  S  R  L  S  N  L  S :   *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F  L  F  S  F  T  A  L  H  N  Q  E  G  F  T  I  V  *  F  F  I  L  R  G  T  L  D  Q  N  F  A  S </second_frame>
            <third_frame>   *  I  A  A  *  K  P  L  F  S  R  L  T  L  S  G  L  G  S  S  D  L  T  A  L  N  S  G  G  N  G  R  W  R  R  D  *  D  C  G  G  K  *  V  P  F  S  Y  W  T  K  I  Q  S  S  G  G  A  *  Q  *  *  C  S  Y  *  D  V  F  C  S  S  R  I  F  L  F  S  P  Q  P  R  S  Q  :  E  R  Q  S  R  C  P  S  K  Y  G  I  *  R  K  R  R  V  I  I  Q  S  *  *  Q  W  S  S  K  R  I  Q  T  G  I  I  W  L  *  F  S  S  K  Y  S  R  S  Q  E  :  Y  D  R  G  S  N  S  R  T  V  *  S  K  R  W  *  G  Y  N  S  H  A  *  A  T  *   : A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F  S  F  F  L  L  L  P  F  T  T  K  R  G  L  Q  L  Y  N  S  L  Y  *  G  A  H  W  T  K  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140425" stop="140250"/>
                    <exon start="138294" stop="138148"/>
                    <exon start="136112" stop="136034"/>
                    <exon start="124678" stop="124496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREAMEGGEEIEIAEENEFPSVIGRKYSPVVAHDNDSAVIEMSSVRPGSSSSLPNHDLKNVKVGVHPNMASEERDESLSNHSSNGPQRESKLELFGFDSLVNILGLKSMTGDQIPAPSSPRDGEDITLTLEQPKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125432" e_stop="124928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125432" e_stop="124928" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125432" stop="124928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</gDNA_template>
            <first_frame> H  L  C  L  Y  Y  R  W  R  L  P  *  T  C  *  G  C  *  G  R  L  Q  G  T  K  Y  L  Y  *  L  Q  A  M  *  R  C  S  *  D  C  C  C  P  K  H  V  *  R  L  S  R  H  C  S  D  Y  G  S  R  K  S  Q  A  K  Y  N  R  Y  A  V  P  *  D  L  A  T  *  K  F  D  *  Y  S  C  Y  L  C  W  N  N  *  *  L  H  C  C  E  Q  G  C  C  H  C  Q  G  S  R  R  M  A  *  *  V  P  K  T  V  W  Y  H  R  F  I  L  D  S  E  R  W  W  S  H  A  S  T  L  S  A  P  P  Y  K  R  *  L  *  R  L  *  D  T  G  V  L  H  C  R  G  R  F  *  C  R  G  I  E  G  *  </first_frame>
            <second_frame>  I  F  V  S  I  I  D  G  D  Y  H  E  R  A  E  D  A  K  D  A  C  K  E  L  S  T  Y  I  D  Y  K  Q  C  E  G  V  A  E  I  V  V  A  P  S  M  S  E  G  F  R  G  I  V  Q  T  M  G  L  G  N  L  K  P  N  I  I  V  M  R  Y  P  E  I  W  R  R  E  N  L  T  D  I  P  A  T  F  V  G  I  I  N  D  C  I  V  A  N  K  A  V  V  I  V  K  G  L  D  E  W  P  N  E  Y  Q  R  Q  Y  G  T  I  D  L  Y  W  I  V  R  D  G  G  L  M  L  L  L  S  Q  L  L  L  T  K  D  S  F  E  G  C  K  I  Q  V  F  C  I  A  E  E  D  S  D  A  E  G  L  K  A  D </second_frame>
            <third_frame>   S  L  S  L  L  S  M  E  T  T  M  N  V  L  R  M  L  R  T  L  A  R  N  *  V  P  I  L  T  T  S  N  V  K  V  *  L  R  L  L  L  P  Q  A  C  L  K  A  F  E  A  L  F  R  L  W  V  S  E  I  S  S  Q  I  *  S  L  C  G  T  L  R  F  G  D  V  K  I  *  L  I  F  L  L  P  L  L  E  *  L  M  T  A  L  L  R  T  R  L  L  S  L  S  R  V  S  T  N  G  L  M  S  T  K  D  S  M  V  P  S  I  Y  T  G  *  *  E  M  V  V  S  C  F  Y  S  L  S  S  S  L  Q  K  I  A  L  K  A  V  R  Y  R  C  S  A  L  Q  R  K  I  L  M  Q  R  D  *  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125431" stop="124928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVSIIDGDYHERAEDAKDACKELSTYIDYKQCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFEGCKIQVFCIAEEDSDAEGLKAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="130162" e_stop="130103"/>
            <exon e_start="129468" e_stop="129068"/>
            <exon e_start="128049" e_stop="127888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130162" e_stop="130103" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="130102" i_stop="129469" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129468" e_stop="129068" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.970">
            <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="128049" e_stop="127888" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130162" stop="130103"/>
              <exon start="129468" stop="129068"/>
              <exon start="128049" stop="127888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG : GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG : TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</gDNA_template>
            <first_frame> S  G  F  C  A  T  I  R  S  C  C  N  *  R  *  A  F  D  *  *  :  V  I  I  C  Y  S  C  L  A  I  S  G  Y  C  L  C  W  Y  N  P  L  N  L  G  G  S  P  S  K  P  Y  W  C  S  T  S  P  C  S  D  C  K  *  *  N  S  T  C  S  *  L  F  *  S  G  R  W  T  *  A  S  C  G  Y  S  L  H  C  H  H  L  H  W  L  C  C  N  R  E  S  R  S  C  L  T  Y  Y  N  N  V  L  P  R  M  L  C  W  R  E  L  I  L  L  P  S  G  S  V  R  C  S  Q  L  A  T  S  V  E  I  S  P  L  E  P  L  S  C  W  S  I  T  L  Y  S :   D  H  V  F  D  F  L  G  I  H  H  C  I  T  C  P  S  K  P  H  I  L  L  R  *  Y  K  G  E  S  R  R  L  G  *  R  F  *  E  C  V  F  S  A  C  S  S  Q  F  A  I  F  G   </first_frame>
            <second_frame>  L  V  S  V  L  L  F  G  A  V  A  T  R  D  K  L  L  T  D  R :   L  L  S  A  T  V  A  W  P  F  P  A  I  V  Y  V  G  I  I  L  S  T  L  G  A  A  L  Q  S  L  T  G  A  P  R  L  L  A  A  I  A  N  D  E  I  L  P  V  L  N  Y  F  K  V  A  D  G  H  E  P  H  V  A  T  L  F  T  A  I  I  C  I  G  C  V  V  I  G  N  L  D  L  V  S  P  T  T  T  M  F  Y  L  V  C  Y  A  G  V  N  L  S  C  F  L  L  D  L  L  D  A  P  S  W  R  P  R  W  K  F  H  H  W  S  L  S  L  V  G  A  L  L  C  I   : V  T  M  F  L  I  S  W  A  F  T  I  V  S  L  A  L  A  S  L  I  Y  Y  Y  V  S  I  K  G  K  A  G  D  W  G  D  G  F  K  S  A  Y  F  Q  L  A  L  R  S  L  R  S  L  G  </second_frame>
            <third_frame>   W  F  L  C  Y  Y  S  E  L  L  Q  L  E  I  S  F  *  L  I   : G  Y  Y  L  L  Q  L  P  G  H  F  R  L  L  F  M  L  V  *  S  S  Q  P  W  G  Q  P  F  K  A  L  L  V  L  H  V  S  L  Q  R  L  Q  M  M  K  F  Y  L  F  L  T  I  L  K  W  Q  M  D  M  S  L  M  W  L  L  S  S  L  P  S  S  A  L  V  V  L  *  S  G  I  *  I  L  S  H  L  L  Q  Q  C  F  T  S  Y  A  M  L  A  *  T  Y  P  A  S  F  W  I  C  *  M  L  P  A  G  D  L  G  G  N  F  T  T  G  A  S  L  L  L  E  H  Y  F  V  *  :  *  P  C  F  *  F  P  G  H  S  P  L  Y  H  L  P  *  Q  A  S  Y  I  I  T  L  V  *  R  G  K  Q  E  T  G  V  T  V  L  R  V  R  I  F  S  L  L  F  A  V  C  D  L  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130161" stop="130103"/>
                    <exon start="129468" stop="129068"/>
                    <exon start="128049" stop="127889"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSVLLFGAVATRDKLLTDRLLSATVAWPFPAIVYVGIILSTLGAALQSLTGAPRLLAAIANDEILPVLNYFKVADGHEPHVATLFTAIICIGCVVIGNLDLVSPTTTMFYLVCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVTMFLISWAFTIVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRSLRSLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 42 chains have been computed
$ 
$ memory statistics:
$ 49768 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2163 bytes was the average size of a spliced alignment
$ 25672 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1510 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:13:53
-->
