<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:06:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228766" ref_strand="+" ref_description="SGN-E228766 [cLEL-29-G13](-)">
      <seq>atgaaattcttaattctcaaaaattaaaggctncattttcaagataatccaaaagacttagatcttctgaagcatgataagatgttaagcaagaaagcacctgccgctcacctacgtgatgtacctgactacctattagatccaacgacacaagaagctagcaagattgtgaagctggccagagctgcaatgggcaatactaatccatctcgtggcaaaggatcaaagggaaggttcaaaagaagcagagaccctcttaaaacattttcagctgaggcacctaagcgagcagggaaaggcaggatgaaaagaaaggtaaaagataccgataatggccattaacattaaaaggaacaccctgcctagttgtttgatacaaggaattgtagtttatacgaaatttgaattatatttatcaatcaattttttttgaatgctttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="1790" stop="63473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2090" g_stop="2111" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2112" i_stop="2791" i_length="680">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2792" g_stop="2829" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="61" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2830" i_stop="2905" i_length="76">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2906" g_stop="3120" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="276" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3121" i_stop="3572" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3573" g_stop="3754" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="458" r_length="182" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E228766" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2090" e_stop="2111"/>
          <exon e_start="2792" e_stop="2829"/>
          <exon e_start="2906" e_stop="3120"/>
          <exon e_start="3573" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATTCTTAATTCTCAAAAGTAAGCTACTCTGTTTATTTTTTCTTTTCTTCTTTGAATAGCTCATTTTCCTTTTTTCACTGTTCATGTATTATTGCGCTAATTTCTGACAATTACTGAGAATATAGCTCAGTTTCTGTCCAAAAATAAGTGTCATGTTTCCGTCCAATCTAGGTGTAATTGTCCTCCTCATCCCATTCTTTTTTTGATAAGGAGTTAAGGACCTTCCCATAGTTCATCACTTTAAGTAGTTTAGAAATGTGATGACAGCCTCATTGTTCTGATTCAGACATCACTCAAATAGAAGTTCTTTCAGTTAAAAGGGGATTTTTGATGGTACAATTGTTACTCACTCTCGACTGTATGATGCATATCTGCTTTAAATTAATTCAGATTTCTTTTCATGGAAATTCAAGATTTGAATGACTCAATACTTTATCAAATGATTTGAATGTCTCATAATATGTTAAAGCTGGAGTAAAACTTATACCTTTGGGAAGAAGTTACAATATTTGTCATATATTTATTTTGTAGATTAATAGTTTGCTTTCATATAGTTATTTGTTTGTTAATATTCTTCACCTATCTGTTAGGAGGCACTTTCCAAGCCTGGTTACTGATTTTATATTTTTCAATGATTGTATTTTGCTGTGCTTGACTTGTAATCTGTATTAACTACTTCTTCCGCTTGTATTATCCAGATTGAAGGCT-CATTTTCAAGATAATCCAAAAGACTTAGGTAATTAGGCTGTAGTTTGTGGGATGTACTTTGAGTGAACATAGTAGGTCTCATTATATTCAAATGTTCTGGGCAGATCTTCTGAAGCATGATAAGATGTTAAGCAAGAAAGCACCTGCCGCTCACCTACGTGATGTACCTGACTACCTATTAGATCCAACGACACAAGAAGCTAGCAAGATTGTGAAGCTGGCCAGAGCTGCAATGGGCAATACTAATCCATCTCGTGGCAAAGGATCAAAGGGAAGGTTCAAAAGAAGCAGAGACCCTCTTAAAACATTTTCAGCTGAGGTATACCTCCCCAACCTCTACTTGCACTAAGCTGTATGTGTTGGTGATTTTACATTCATGTTTTGTCTGTGTACCACTAGAAATTGAACTAGCAAGTTCTACTTATTCGAGTCTTGTCAACATGATGATATGATCAAATGTCTTCCTTCTTGGTTGAGGAAGGGTAAACTTGTGGATTGTGGGGTTAGGTATTACTGTATTTCGTCTCTCTTTTTAATACTTGTCAGAGGTTATCGATGAAGTTCTGCTTATTCATATAGATATGATCTGAGATTACTTGTGTAGTCAATACGTTCCACACGATCAAACAAGGAAATACATCTTGAACAGGATGTAGGTTATCGAAGGGAATGATCATATATATGAAATACAATCCTAGATGATTGTGTTCTTGGCTTTATTATGGGCAACGTTGGTGGCTTGGTGTTTGATCTCTTCTTCTTTGATTGCAGGCACCTAAGCGAGCAGGGAAAGGCGGGATGAAAAGAAAGGTAAAAGATACCGATAATGGCCATTAACATTAAAAGGAACACCCTGCCTAGTTGTTTGATACAAGGAATTGTAGTTTATACGAAATTTGAATTATATTTATCAATCAATTTTTTTTGAATGCTTTCACTAACCCTAGTCCCAG</genome_strand>
        <mrna_strand>ATGAAATTCTTAATTCTCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGGCTNCATTTTCAAGATAATCCAAAAGACTTAG............................................................................ATCTTCTGAAGCATGATAAGATGTTAAGCAAGAAAGCACCTGCCGCTCACCTACGTGATGTACCTGACTACCTATTAGATCCAACGACACAAGAAGCTAGCAAGATTGTGAAGCTGGCCAGAGCTGCAATGGGCAATACTAATCCATCTCGTGGCAAAGGATCAAAGGGAAGGTTCAAAAGAAGCAGAGACCCTCTTAAAACATTTTCAGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTAAGCGAGCAGGGAAAGGCAGGATGAAAAGAAAGGTAAAAGATACCGATAATGGCCATTAACATTAAAAGGAACACCCTGCCTAGTTGTTTGATACAAGGAATTGTAGTTTATACGAAATTTGAATTATATTTATCAATCAATTTTTTTTGAATGCTTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229054" ref_strand="+" ref_description="SGN-E229054 [cLEL-29-G13](-)">
      <seq>ctcaaaaattgaaggctcattttcaagataatccaaaagacttagatcttctgaagcatgataagatgttaagcaagaaagcacctgccgctcacctacgtgatgtacctgactacctattagatccaacgacacaagaagctagcaagattgtgaagctggccagagctgcaatgggcaatactaatccatctcgtggcaaaggatcaaagggaaggttcaaaagaagcagagaccctcttaaaacattttcagctgaggcacctaagcgagcagggaaaggcaggatgaaaagaaaggtaaaagataccgataatggccattaacattaaaaggaacaccctgcctagttgtttgatacaaggaattgtagtttatacgaaatttgaattatatttatcaatcaattttttttgaatgctttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="2490" stop="63473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2792" g_stop="2829" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="45" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2830" i_stop="2905" i_length="76">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2906" g_stop="3120" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="260" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3121" i_stop="3572" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3573" g_stop="3754" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="442" r_length="182" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E229054" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2792" e_stop="2829"/>
          <exon e_start="2906" e_stop="3120"/>
          <exon e_start="3573" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGGCTCATTTTCAAGATAATCCAAAAGACTTAGGTAATTAGGCTGTAGTTTGTGGGATGTACTTTGAGTGAACATAGTAGGTCTCATTATATTCAAATGTTCTGGGCAGATCTTCTGAAGCATGATAAGATGTTAAGCAAGAAAGCACCTGCCGCTCACCTACGTGATGTACCTGACTACCTATTAGATCCAACGACACAAGAAGCTAGCAAGATTGTGAAGCTGGCCAGAGCTGCAATGGGCAATACTAATCCATCTCGTGGCAAAGGATCAAAGGGAAGGTTCAAAAGAAGCAGAGACCCTCTTAAAACATTTTCAGCTGAGGTATACCTCCCCAACCTCTACTTGCACTAAGCTGTATGTGTTGGTGATTTTACATTCATGTTTTGTCTGTGTACCACTAGAAATTGAACTAGCAAGTTCTACTTATTCGAGTCTTGTCAACATGATGATATGATCAAATGTCTTCCTTCTTGGTTGAGGAAGGGTAAACTTGTGGATTGTGGGGTTAGGTATTACTGTATTTCGTCTCTCTTTTTAATACTTGTCAGAGGTTATCGATGAAGTTCTGCTTATTCATATAGATATGATCTGAGATTACTTGTGTAGTCAATACGTTCCACACGATCAAACAAGGAAATACATCTTGAACAGGATGTAGGTTATCGAAGGGAATGATCATATATATGAAATACAATCCTAGATGATTGTGTTCTTGGCTTTATTATGGGCAACGTTGGTGGCTTGGTGTTTGATCTCTTCTTCTTTGATTGCAGGCACCTAAGCGAGCAGGGAAAGGCGGGATGAAAAGAAAGGTAAAAGATACCGATAATGGCCATTAACATTAAAAGGAACACCCTGCCTAGTTGTTTGATACAAGGAATTGTAGTTTATACGAAATTTGAATTATATTTATCAATCAATTTTTTTTGAATGCTTTCACTAACCCTAGTCCCAG</genome_strand>
        <mrna_strand>ATTGAAGGCTCATTTTCAAGATAATCCAAAAGACTTAG............................................................................ATCTTCTGAAGCATGATAAGATGTTAAGCAAGAAAGCACCTGCCGCTCACCTACGTGATGTACCTGACTACCTATTAGATCCAACGACACAAGAAGCTAGCAAGATTGTGAAGCTGGCCAGAGCTGCAATGGGCAATACTAATCCATCTCGTGGCAAAGGATCAAAGGGAAGGTTCAAAAGAAGCAGAGACCCTCTTAAAACATTTTCAGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTAAGCGAGCAGGGAAAGGCAGGATGAAAAGAAAGGTAAAAGATACCGATAATGGCCATTAACATTAAAAGGAACACCCTGCCTAGTTGTTTGATACAAGGAATTGTAGTTTATACGAAATTTGAATTATATTTATCAATCAATTTTTTTTGAATGCTTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549300" ref_strand="+" ref_description="SGN-E549300 [TUS-69-C9](-)">
      <seq>ataaatggtcttgaaggtatatggaaactattcaaccaagtaggcgaaaactcggctgaattacaattaagtccctatggaggaaagttgagtgagatatcggaatctgaaacacctttccctcatagagatggaaacatattcatgatccattatggggtgaattggggtgaaatggaaagttctagtaagcatatatcttggattcgaaacctttatggatacatggctaggtatgcatcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggagtgaacaacaaaggaaacacaagctatgcacaagcaagagtttggggggtgaaatatttcaagaacaactttgatagattggtcaaaatcaagacaaaagttgatccaacaaacttctttagaaatgaacaaagtgttcctcctctatatatataatttatgcactctacaaataaggcttatcatatatagtagttcttttatgtatatatatagtaatatagtactgaaaaataaatgtagccaaggtgcgtttcaaacatattgtgtaagatatatattgtttgatttataatatttttttcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="6168" stop="5028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5868" g_stop="5284" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="610"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E549300" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5868" e_stop="5284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTGAGTGAGATATCGGAATCTGAAACACCTTTCCCTCATAGAGATGGAAACATATTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAATAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGTGTCAAGATCTCCTAGAGCTGCTTATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTGGTCAAAATCAAGACTAAAGTTGATCCAACAAATTTCTTTAGGAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATGTATATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAGGAAGCCTTCCAAAGATATTTTATAAGATGTATTATTGTTTGATTT</genome_strand>
        <mrna_strand>ATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTGAGTGAGATATCGGAATCTGAAACACCTTTCCCTCATAGAGATGGAAACATATTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAGTAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGCATCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGCACAAGCAAGAGTTTGGGGGGTGAAATATTTCAAGAACAACTTTGATAGATTGGTCAAAATCAAGACAAAAGTTGATCCAACAAACTTCTTTAGAAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATG--TATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAAGGTGCGTTTCAAACATATTGTGTAAGATATA-TATTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546047" ref_strand="+" ref_description="SGN-E546047 [TUS-69-D9]">
      <seq>cttaacaatctttttctttctctcaatttgcctaatttcatcatcatgggctaacaaaactcatgatgactttcttgaatgcctttctcataaaattatgaattcaaactcaaaatcacaagttatctacactcctaaaaactcatcatattccaccctttataactctttttcaagtaatctaaggataacttccgatttcaaaccatcaattattttcactcctaatgatgaatctcaaatccaggcagctatacattgctccaagaaacatggcttacaaattagaattcgaggcggtggacatgattatgagggactttcatacatttctgaaaccccttttgtcataattgatcttagaaacctaagagcaatatccattgatacggaagacaagactgcttggattcaagctggggcgagactaggggaagtttactatagaatcgcggaaaaaagtaaaaaattagcctttgttgctggggtttgccctactgttggtgttggtggacactttagtggtggagggtatggcatgatgtcacgaaaattcggtactgctgctgataacatcattgatgcaaaactaattgatgctaatggacgtatccatgatcgagaatcaatgggtgaggatcacttttnggctattagaggaagtggagggactagttttggtctcattatctcatggaaagtgaaaatacttgatattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="7297" stop="5978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6997" g_stop="6277" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E546047" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6997" e_stop="6277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTAAATGCCTTTCTCACAAAATTATGAACTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATGACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGAAGCTATACATTGCTCCAAGAAACATGGCTTGCAAATTAGAATTCGAGGCGGTGGACATGACTATGAGGGACTTTCATACATTTCTGAAACCCCGTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGCGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGTATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAGTTAATTGATGCTAATGGACGTATCCATGATCGAGAATCAATGGGTGAGGATCACTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAGGTGAAATTACTTGATATTCCA</genome_strand>
        <mrna_strand>CTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCATAAAATTATGAATTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATAACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGAAACATGGCTTACAAATTAGAATTCGAGGCGGTGGACATGATTATGAGGGACTTTCATACATTTCTGAAACCCCTTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGGGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAACTAATTGATGCTAATGGACGTATCCATGATCGAGAATCAATGGGTGAGGATCACTTTTNGGCTATTAGAGGAAGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAAGTGAAAATACTTGATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355914" ref_strand="+" ref_description="SGN-E355914 [cLHT-12-N4]">
      <seq>ttaacaatctttttctttctctcaatttgcctaatttcatcatcatgggctaacaaaactcatgatgactttcttgaatgcctttctcataaaattatgaattcaaactcaaaatcacaagttatctacactcctaaaaactcatcatattccaccctttataactctttttcaagtaatctaaggataacttccgatttcaaaccatcaattattttcactcctaatgatgaatctcaaatccaggcagctatacattgctccaagaaacatggcttacaaattagaattcgaggcggtggacatgattatgagggactttcatacatttctgaaaccccttttgtcataattgatcttagaaacctaagagcaatatccattgatacggaagacaagactgcttggattcaagctggggcgagactaggggaagtttactatagaatcgcggaaaaaagtaaaaaattagcctttgttgctggggtttgccctactgttggtgttggtggacactttagtggtggagggtatggcatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="7296" stop="6153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6996" g_stop="6453" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E355914" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6996" e_stop="6453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTAAATGCCTTTCTCACAAAATTATGAACTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATGACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGAAGCTATACATTGCTCCAAGAAACATGGCTTGCAAATTAGAATTCGAGGCGGTGGACATGACTATGAGGGACTTTCATACATTTCTGAAACCCCGTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGCGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGTATGATGT</genome_strand>
        <mrna_strand>TTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCATAAAATTATGAATTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATAACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGAAACATGGCTTACAAATTAGAATTCGAGGCGGTGGACATGATTATGAGGGACTTTCATACATTTCTGAAACCCCTTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGGGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGCATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698928" ref_strand="+" ref_description="SGN-E698928 [FA08AB08]">
      <seq>cgcaaataatcaaatgatgactagtttcaacaagttaacaatcctttttctttctctcaatttgcctaatttcatcatcatgggctaacaaaactcatgatgactttcttgaatgcctttctcacaaaattatgaactcaaccttaatatcacaagtaatccacactcctaaaaactcatcatattcaaccatttataactcctattcagataacgtaaggataacctccgacttcaaaccatcaattattttcactcctaccaaagaatctcaaatccaggcagctatacattgctccaagatacatgacctacaaattaggattcgaagcggtggacatgactatgagggactttcatacacttcggacaccccttttttcataattgatcttacaaacctaagatcaatatccgttgatacccaaaaaaagactgcttggattcaagctggcgcgactctaggggaagtttactatagaatcgcggaaaaaagtaaaaaattggctgtacttgctggggtttgcccaactgttggtgttggcggacactttagtggtggaggctatggcatgatgtcacgaaaattcggtactgctgctgataacatcattgatgcaaaattaattgatgctaatggacgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="14852" stop="13609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14554" g_stop="13909" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E698928" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14554" e_stop="13909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAAT-CTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTAGAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTAGTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATT</genome_strand>
        <mrna_strand>CGCAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAATCCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTACAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTACTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGCGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544842" ref_strand="+" ref_description="SGN-E544842 [TUS-67-G4](-)">
      <seq>attcctttccctcatagagctggaaatatattcacgatcgagtatggagtgtattggagtaaaatcgaaaattctcaaagaaatatagcttggattcgaaaactttatgaatacatgggtaagtatgtgtcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggaatgaacaatattaatggaaacccaagctatgatgaagcaagagtttggggagtgaaatatttcaagagcaactttgatagattagtacaagtcaagactaagtttgatccaactaatttctttaggaatcaacaaagtattcctcctctattatctttaggttataatatatggtagttaatttatatataatactatagtactgaaaaataaatgtacgtagcaaggatcgatttgtttcaaagattatgtacgatatatattgtttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="26035" stop="24976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25735" g_stop="25283" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="481"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E544842" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25735" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</genome_strand>
        <mrna_strand>ATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAAAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACCCAAGCTATGATGAAGCAAGAGTTTGGGGAGTGAAATATTTCAAGAGCAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549109" ref_strand="+" ref_description="SGN-E549109 [TUS-67-G4]">
      <seq>attcctttccctcatagagctggaaatatattcacgatcgagtatggagtgtattggagtaaaatcgaaaattctcaaagaaatatagcttggattcgaaaactttatgaatacatgggtaagtatgtgtcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggaatgaacaatattaatggaaacacaagctatgatgaagcaagagtttggggagtgaaatatttcaagagcaactttgatagattagtacaagtcaagactaagtttgatccaactaatttctttaggaatcaacaaagtattcctcctctattatctttaggttataatatatggtagttaatttatatataatactatagtactgaaaaataaatgtacgtagcaaggatcgatttgtttcaaagattatgtacgatatatattgtttgatttanaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="26035" stop="24976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25735" g_stop="25283" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="481"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E549109" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25735" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</genome_strand>
        <mrna_strand>ATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAAAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGATGAAGCAAGAGTTTGGGGAGTGAAATATTTCAAGAGCAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308623" ref_strand="+" ref_description="SGN-E308623 [cLEY-21-F20]">
      <seq>ttcctttccctcatagagctggaaatatattcacgatcgagtatggagtgtattggagtaaaatcgaaaattctcaaagaaatatagcttggattcgaaaactttatgaatacatgggtaagtatgtgtcaaaatctcctagagctgcatatttgaactatagagatcttgatttaggaatgaacaatattaatggaaacacaagctatgatgaagcaagagtttggggagtgaaatatttcaagagcaactttgatagattagtacaagtcaagactaagtttgatccaactaatttctttaggaatcaacaaagtattcctcctctattatctttaggttataatatatggtagttaatttatatataatactatagtactgaaaaataaatgtacgtagcaaggatcgatttgtttcaaagattatgtacgatatatattgtttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="26034" stop="24976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25734" g_stop="25283" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E308623" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25734" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</genome_strand>
        <mrna_strand>TTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAAAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGATGAAGCAAGAGTTTGGGGAGTGAAATATTTCAAGAGCAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337202" ref_strand="+" ref_description="SGN-E337202 [cTOE-7-G5]">
      <seq>aaagaaccaaaagcaaattcgtatttgctcgccctgctaaggtcactgagaccttgctcaagtacatcccaatccatgaaattcctattcaatatggtggactcaagagggagaatgactttgagttttcagcctccgactgtgaagcttcggagattctccttaaagctggatcaactgaaactattgaaatacctgcagtagatgtggaaagtacatttatctgggatgttacgattgtgggcggagaagtgagctataaagaggaatttgttccagaggatgagacttcttacactataatcattcagaaggacaagaaggtgagctcgacaattcgcaacacattcaagaacactgaagcaggaaaggttgtgctgacaatcaagaacacttctagcaagaagaagaaggcgttttatcgacacaagatcaccaaatcaacaatttgagatgagcaagtttctattttgagtgaagatggagttctttttctctgtttttaagaatatgtataatgtagtaacctttttgtggtggttcatatacttgattatttttggtcctacattcatattgtatatgctgatttattcttttttctccctacaaggaagaatatgatctctctattttttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="37751" stop="36334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37451" g_stop="37391" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37390" i_stop="37304" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37303" g_stop="37159" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="206" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37158" i_stop="37070" i_length="89">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37069" g_stop="36635" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="641" r_length="435" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36634" i_stop="36453" i_length="182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36452" g_stop="36443" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="651" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E337202" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37451" e_stop="37391"/>
          <exon e_start="37303" e_stop="37159"/>
          <exon e_start="37069" e_stop="36635"/>
          <exon e_start="36452" e_stop="36443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAAGTAAGTTTCAAACATAAATCCAGTATTTGTCTGTTTAACTTTACTGTCTAATGTGGTCTAAATGTTGAACTATTTGGCTTGAGTTAGGTACATTCCAATCCATGAAATCCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAATTGAAACTATTGAAATACCTGCAGTAGATGTAAGTATTAACTAACTTTGGATATATTGAGAGAGCTTTGATATTACGCGGAGATTTTGAATGTTTTGTGTTAAACTTTATTATGTCAGGTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAGGAGGAATTTGTGCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACGTTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACCATCTTATCATTTGAATTTTTCTTAATAGCACACCATGGTGATTGATCCACCATCATCATACCTTGATATTTGATATAACAATCAGCATATTAAATATAACAAATTAATAACATTTTCCATGACACTTTTTTATCAAACCTTCCAACAATTTGTGAAAAGGAATTCCAAATAATTTATTTTAGATGGAAAAAA</genome_strand>
        <mrna_strand>AAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAA.......................................................................................GTACATCCCAATCCATGAAATTCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAACTGAAACTATTGAAATACCTGCAGTAGAT.........................................................................................GTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAAGAGGAATTTGTTCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACATTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACC......................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314318" ref_strand="+" ref_description="SGN-E314318 [cTOA-21-O6]">
      <seq>tttcacacaagcaaagcaacctcattcaactccaaaagctgtttaggggaggaggtgatttctaagatccaacacttgtgtaattgtgttatttatctaaaaacatgactgttgaggtgcaatgtgaggcaactcaagtggctgaagtagttgttccacaagaggaattagtggctgctaacaaggttgtagaggaggttgaggtgaatgagaaggtaaaagaagatgaagaagaggaatccaagcctaatacaattgagaaaagctcttcttatagagaagagagcaacttcctctctgatctcaaagagaatgagaagaaggcattgaatgagttgaaatctatagttgaggaggccattgttgggaacactctattcaaaaaagaagagaccaacaagtctctagaggaagagggaaagaatgaggaaaatcccgatgcgaatatagaggagaaggagggtgatttggatgttgttgaagtggatagagagatttctatttggggtgtacccattttgcctagcaaaggggatgagaaaaccaatgtggttctattgaaattcttgagagcaagggattacaaagtgaatgaaatcttcgaaatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="39402" stop="37689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39102" g_stop="39065" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38562" g_stop="37989" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="612" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E314318" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39102" e_stop="39065"/>
          <exon e_start="38562" e_stop="37989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAGGTGATTTTCTAATAACTCTTCCTTTTTTTTTTTTTTTTGAATATTTTATGTATACTATAGATGTTTTAGTTGATTGTGTTGTTGTTTCAGAGGTTTTAGTTTATTAAGGTTTATGGGAAACAATAAACAATATCTTTTAGGATTATACCGAGTATGCCGTTGTTGTTTGTAGAGATTTTTAGATTGACTAGATTCAGCTACATTGTCATTGAAAATCCATTATCTATATATCATCTTGAACAGAAAAGGTTGATTTTTCAGGGTTCTTAAGGGGAGAGTATTTCTTTTTCCACATTTTTAGATCTGTTGGATTGATTTTTGGTTTATTTTTATCATTTAGTGCTTGTAAGCTTTATTTTGAATTGAACCAAACACTTTAGTAAGCCAATTCAAAAAAGGCTCTAGTTTAACTTCATTGTTAATTTGAATTAAATCATGTTCTCTTTTGGCTATTTAGGGCACTGATTCAGGGACTCAAAATTTTGTTTTACTTGATTTTCAGCTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAATCTTTCGAAATGCTCA</genome_strand>
        <mrna_strand>TTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTAGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAAATCTTCGAAATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309464" ref_strand="+" ref_description="SGN-E309464 [cTOA-2-C24]">
      <seq>acaagcaaagcatcctcattcaactccaaaagctgtttaggggaggaggtgatttctaagatccaacacttgtgtaattgtgttatttatctaaaaacatgactgttgaggtgcaatgtgaggcaactcaagtggctgaagtagttgttccacaagaggaattagtggctgctaacaaggttgtagaggaggttgaggtgaatgagaaggtaaaagaagatgaagaataggaatccaagcctaatacaattgagaaaagctcttcttatagagaagagagcaacttcctctctgatctcaaagagaatgagaagaaggcattgaatgagttgaaatctatagttgaagaggccattgttgggaacactctattcaaaaaagaagagaccaacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="39396" stop="37898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39096" g_stop="39065" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38562" g_stop="38198" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="397" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E309464" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39096" e_stop="39065"/>
          <exon e_start="38562" e_stop="38198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAAGCAACCTCATTCAACTCCAAAAGGTGATTTTCTAATAACTCTTCCTTTTTTTTTTTTTTTTGAATATTTTATGTATACTATAGATGTTTTAGTTGATTGTGTTGTTGTTTCAGAGGTTTTAGTTTATTAAGGTTTATGGGAAACAATAAACAATATCTTTTAGGATTATACCGAGTATGCCGTTGTTGTTTGTAGAGATTTTTAGATTGACTAGATTCAGCTACATTGTCATTGAAAATCCATTATCTATATATCATCTTGAACAGAAAAGGTTGATTTTTCAGGGTTCTTAAGGGGAGAGTATTTCTTTTTCCACATTTTTAGATCTGTTGGATTGATTTTTGGTTTATTTTTATCATTTAGTGCTTGTAAGCTTTATTTTGAATTGAACCAAACACTTTAGTAAGCCAATTCAAAAAAGGCTCTAGTTTAACTTCATTGTTAATTTGAATTAAATCATGTTCTCTTTTGGCTATTTAGGGCACTGATTCAGGGACTCAAAATTTTGTTTTACTTGATTTTCAGCTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTC</genome_strand>
        <mrna_strand>ACAAGCAAAGCATCCTCATTCAACTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTAGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAATAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAAGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300745" ref_strand="+" ref_description="SGN-E300745 [cLEW-8-H4]">
      <seq>acaagcaaagcaacctcattcaactccaaaagctgtttaggggaggaggtgatttctaagatccaacacttgtgtaattgtgttatttatctaaaaacatgactgttgaggtgcaatgtgaggcaactcaagtggctgaagtagttgttccacaagaggaattagtggctgctaacaaggttgtagaggaggttgaggtgaatgacaaggtaaaagaagatgaagaagaggaatccaagcctaatacaattgagaaaagctcttcttatagagaagagagcaacttcctctctgatctcaaagagaatgagaagaaggcatcgaatgagttgaaatctatagttgaggaggccattgatgggaacactcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="39396" stop="37924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39096" g_stop="39065" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38562" g_stop="38224" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="371" r_length="339" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E300745" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39096" e_stop="39065"/>
          <exon e_start="38562" e_stop="38224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAAGCAACCTCATTCAACTCCAAAAGGTGATTTTCTAATAACTCTTCCTTTTTTTTTTTTTTTTGAATATTTTATGTATACTATAGATGTTTTAGTTGATTGTGTTGTTGTTTCAGAGGTTTTAGTTTATTAAGGTTTATGGGAAACAATAAACAATATCTTTTAGGATTATACCGAGTATGCCGTTGTTGTTTGTAGAGATTTTTAGATTGACTAGATTCAGCTACATTGTCATTGAAAATCCATTATCTATATATCATCTTGAACAGAAAAGGTTGATTTTTCAGGGTTCTTAAGGGGAGAGTATTTCTTTTTCCACATTTTTAGATCTGTTGGATTGATTTTTGGTTTATTTTTATCATTTAGTGCTTGTAAGCTTTATTTTGAATTGAACCAAACACTTTAGTAAGCCAATTCAAAAAAGGCTCTAGTTTAACTTCATTGTTAATTTGAATTAAATCATGTTCTCTTTTGGCTATTTAGGGCACTGATTCAGGGACTCAAAATTTTGTTTTACTTGATTTTCAGCTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTA</genome_strand>
        <mrna_strand>ACAAGCAAAGCAACCTCATTCAACTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTAGAGGAGGTTGAGGTGAATGACAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATCGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGATGGGAACACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379132" ref_strand="+" ref_description="SGN-E379132 [TUS-3-P18]">
      <seq>aatatgacaaggttcataagtctcactaacttggaaagcaagtaaaactcaagaaacatggagatcatgatcatcattgccttcacttatagacggaatggtatgctcatcggctgcaagtataggactcttgagaaaaggttttggcaggagaagggtgctgataaggtactatatggactggatgatgtaagagaagcagatgagatcatcattgtagaaggtgaaatagataagctttcagtggaagaagctggatttcctaactgtgtcagtgttcctaatggtgcaccacagggcatcgcatccaaagaactgctaccactggaagagacaggataccagattttcatacctgtggaactgcaatgagtgcttggagaaggcgtcccggattgtgctggcaactgatggtgatttaccaggccaagcattggctgaagagcttgcccgccgtctggggaaagaaaggtgttggcaagtatgttggccgaaaaagaatgagttaagcagttataaagatgcaaatgaggtacttgtaaatcttggaagagaagctctgaaagaagcgattgaatgtgccgtgccatatgaaatgcagaatttgaactaatccnacaagtttttagtcttaagagatatctttccnacattacttgaccctctccacgagactttatgcatctgtgacaggttggtagatgaaaggtttcattgtttacttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="47609" stop="40701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47309" g_stop="47241" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47240" i_stop="47127" i_length="114">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47126" g_stop="47046" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="150" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47045" i_stop="45070" i_length="1976">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45069" g_stop="45004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45003" i_stop="44925" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44924" g_stop="44808" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="333" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44807" i_stop="44695" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.010" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44643" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="385" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44642" i_stop="44542" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44541" g_stop="44456" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="471" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44455" i_stop="42709" i_length="1747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42708" g_stop="42648" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="532" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42647" i_stop="41437" i_length="1211">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41436" g_stop="41331" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="638" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41330" i_stop="41221" i_length="110">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.580" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41220" g_stop="41173" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="686" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41172" i_stop="41043" i_length="130">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41042" g_stop="41001" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="728" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E379132" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47309" e_stop="47241"/>
          <exon e_start="47126" e_stop="47046"/>
          <exon e_start="45069" e_stop="45004"/>
          <exon e_start="44924" e_stop="44808"/>
          <exon e_start="44694" e_stop="44643"/>
          <exon e_start="44541" e_stop="44456"/>
          <exon e_start="42708" e_stop="42648"/>
          <exon e_start="41436" e_stop="41331"/>
          <exon e_start="41220" e_stop="41173"/>
          <exon e_start="41042" e_stop="41001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATGGTAGATAATCTTATCATTAACCTCATTTTGAAACTGGAAAGTAATATTTTATGGCTGCATCATGGGTAGAGTCGTAGAGATATAAATTACATGCCAATATTTGGGTGCTTGCAGATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAGGTAAATTTGTTCTTTAAGTTACAACCCTAACTGCATGCATGGAGTAATGGGGAAGTACGTGAAAACACAATATGCCATTACTGCTTAACTATATGCAATGCATGCTTCCAATTCTTAAGCTAAAGTTAGTCTTGCAAAAGTTTCTCGATGAGCAAATTCTTTAGCTTCAAATTCCTTTTAATAAAAAAGATATTGTGTCCTTGGCTGAAATTAATAGTTTAGTATTGTTGCTCCTAATAAGCACACACATGCAGTCGCGCAAGTAATATAGTTTATTAAGAAACGAGTTTTCGTTCCCATGGGACTTATGATCAACTTATATTTATTAACTTAATTCCACAATTCGACAAAAGTAACTTTTTAAAAGGGTGAATGTTGTTAATCACTACTACAACTAATGCAATAAATAAAATAACTAATGTGAACGACTTTAATTTGATGTTTTAAGCAAGTAAGAGACAATTCCAGGGCTGCAGCATGCATTGGATTTCATGTATCGTACCTCAGGTAGTGAACTAATTAGGTTATCAAGCTACTGATTTACATGGTTGATTTTATGATTATGGTCTTCCGACCTCTAATCGCCTACTTTAGCTGTCTAACTACATCGTTGAACGGAGATAGACAGTCCTAATTGGCGAGCATTTATTTTTCATCTTGTTTTATAACTAAGCTAGGTGTTCGTCCGAGCGTCACTCCTAAATACAAATCAATTCAACTTAATGGAAGATCAAACTTTCTATATTCTTTGGTCTATCTACCTTAGCCTCTCTCGATTTTAAGAGCAGACAAGAGATTTATCTCTATGATGGCCAATCAAGAAATACTAAAACAAGAATAAAAAGTAACTTAAAACGATAACGAAGAATTGATTCAAAAACCTTTAATACTCCACAATCATTCCGTAGCTACATCCCCTGAACAAGGGCGTTTAGCCACTCATAATGTTCAAAAACCGCAAAATAGAATTGTTTATGCGATTTCCAAAATAAAGAAGAGATAGAAAATCGAAACCTGTTAGAAAACTTGGATGTTGCTCTTGCACACCAAAAAGTAGTCGAACCCTAACAAATAGCCCTAGGGTCCTATTTATAGAAGTTAGGAAAAGTATTTTCTAAATCTAATCCGACAAGGAGTCCTATTCAAGTCAACTTTCGCTGGGCATGTCGAAAACGGGCTGGGGCACCGCGGCAGACAGTGCCTTCAGTCGTTCCAGCTGTGGCGCGCCGCGCCAAGTAGTGCGCCTGGAGTTGCTTCTGCAGTTCTAGCCTTGGCGCCTCGCGCCAGGCAGTGCGTCTGAGGAAGGTGTCGAGTGTTGGCCTTGGCGCTTTGCGACCAGGTAGTGCGCCTGAAAAGGTCGCCTGTGGTTCTGGCCTTGGCGCCTCGCACCAGGCAGTGCGCCACTCACTGCTGTTTCCTCCTTAGTTTATTTTAATGCTTCCTTGCTTCTCCTTCCCTCGAATAGACTCCATTTACCTTGAAAGTTCCTGCATCACCTAATCATGTGTTTTAGTGCACAATCATCGCAAGTTAAACAAAACAAAACTAATAGTCTCAAGATTATTCTTAAATTCACCCCAAAGTAGGCATTTATTGGCAAATTCGGCATATAAATATGCCTAAGATCAAGTATCTTACAACAAGAAGGGGATTGTTTGTCATGCTAATACATATGACACTTCACAATTATATTGTGGTAATATTTATCAAAATTTTTAAAAATTGGTTCCTACTTTATGGGTTTTGGGTTTGGGACTCTTTTGAATAACTTTAGCCTATCCTCTGGACAAATGTTTCTGAACAGTTTCTTTGTGATGTCAATTTAAGAGTTTTTTCAAGCTTCCAGTCAGTGTCTGCTGTTTTCACTGACATTGATTTTTCTGAAGGAAAATTTGATATAGTCTGAACAGAGAAGTTAGTATTTTTCCTTATTTTCCTCGTGCCTTTATTAATCAACTTCTACTTTCGATTGCCAGGAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATTGTAAGTTCCAAAACTTTTTCTTTCTCAGATATGTATTTCTGTCTGCTGATTAGATGTGATACTCTATTGCTGACCAAAGGTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAGGTGTGTCACAAGTATTTTGACATAATGTTACCATTGTGGTTTACCACTTATTTTAAAATTATTTGATATTTAGGATTATATTTCCAGCTTAATAGTTCTTCTTGCACCTGAAGACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAGGTTGGTCGTCTTGATGCATTAAACTGAGAACACTAAGCAAAAGATATGTTCCTAATGTCATTGCTCATTCCTTTTCTATTTTTTAATTTATATGTTTTCAGGCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAGGTTTTTTCCTTCTTCTCTTGTATGTTTATTTTGTGTTCCTTTCTTCGATGTCCCAAAATGTTGTCTACTTAAGTGGATGATTTCTCCATGCACTTCTTTTCAAGTTGCTGAACATTGTATTCAAGAAGTGGAAACTGCAAGAATTCTTGCAATTTCAAATCAATTGTAAATAAGTTTTCATATACTTTGGACTAGTGCCGGCAAAATGAGCCCATATTTTGGTAACCCGCCCATATTTTAATGGGTTGGGTGAGTGATTTTTTACATGAGTAAAAAATGGGTTGATACCCTTATTCAACCCATAAAATATGGGTAAAATATAGATTAGCCAAATGGGTTAAGCTTCTAACTTTTATTCACTCAAATTGATGATATCACTAAAAATATTGGAACTTCTCTTCCTTTTTATGTTCTTCTACAGAACTAATTATTTTTCTCTATAATTGAAAAGATGAAGTTCTTTGACCCTCCAAAAATATACATTTTAATTGTATATTTCTTTTGCTAATTATAATTGTATTTTTTTAAAATTTTATATTGGATATTAAAATAGTGTAAAAATAAGCAAATCATGTATTAGTATTGACATTGCTTAAAGCGCATTAAGCATGTTCTTAAAATGCATATATGCATTTACTTTGAAATTAAAAATATTTTCCTCTTGTTATTACATAAATTTATTTTATATCGAAAAGTTATAGGAATTTTGTTTTTTACTTTTGTAAGAACATTTTAAAAATATTTTCTCCATGTTGTATTCTTATGTAGAGTACTATTTACTCATGCAATATGGGTAAACTAGTATTTTGCCCAACCCATTTATTACCCAATCAATTTTTACCCATATCAAATATGGATGGGTTGAATTATTATCATTTTCTGTTGACCATTTTCAACCCGCCCAAATTTTACCCCCCTCCCCACACACACACACACACACTTGCCACCACTACTTTGGACTAACTTATCTCCATTTCTCCAATGCCTAGAAACATTTTTCATAGTCATACTTAGAGAAAGACTAACCCAAAAAACTTCTTTTGGTGGTTTGCAATTGCATGCATCTTTCTGTCAATGCAGCTAAATTACGCAAGGCATGCCTATTTTGTAATAACCATTGTCATCATTAAAGTTCATGGTTACAAATTTTAGATGAGAACTAAAAAAAAAAAGAAACCACTTGCTTGATGTAGCCGCTAAGTTGCTCTTCAAATTAGTCAAATGGCAACATAAGTCCTTGAAAAATTTGGGTTCTATTGACTTTTCATAACCCCAAACTTTTATCTTTTCTGTATTCTCTTAATCTTGGCTCTAAGAGAGTTCAAGAGATATAGAGAGACTTATATATTGATGTAGCAAGTGGAATACTAAATAAGAAAGGGTATTGCACCTTTTGGGAGGTGGAGTCAAATTTGCGTCGGGTAAGAATGCAGAATAATGTACATCTAAATGAATATACTGGATTGTTGTACCTTTTTATCACTAGTTAAGTGTATTTTGTGTTTTTGACAGTTGTGAGAAGACATGCCTTTTTTCTTTCTGTGCATGAGAATCACAGCCTTTCAGCATGCTCGGACCTAATATAATTTTCTCTGTCTGTTCATTGGTATTTATCTCAGTGGCTGCAATACACAGATGCTTCTACTTGTAACTCTCATTTGTTCAATCCATCATGCAATCCAAAGCCTTATTACTTCACCAACGGGTCAGAAAGTATTACAATTGGTTGACTTTGCTTGATTTGCAGGTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAGGTGAAAATCTTTTTATTTTCTTTTTCCTTTTAGGATGTTGCCGTCATATTTCTTTCTCTGTTATAACGATACATTTCTTGTGAGCAGTTTTCCTTCTTTCTTTCTTTACTTCTTTGTTTATAGAGGTGCTGCAGTAAATTTCAACTAGGGTCAAGAAGAATCAACTATGCGAAAGATTTGAACGTTTAGCTTATAATTATGATCTGTGGGTCGTGAGAACTACATTGTTAGAGATCACGGGATTGTGACTCATTTAATGTCAATCTACATGTTTTTCCATGAGTAAATAGTTTATTAGAATATCATTCCTAGGAACCAACCAATATACATCAATAATATACTGATGCATGATGTGCCTTTGCTGCTTAACCAACCACCATCCAGGTCAAACCATGGCTAATTTATCTCCTACCATTACTGTATCTATATTTGTGACCAAAGAAAGGTTTCTCATAAAGCTAAAGCTCAGAATTGATAGCATGCATGGTCATCAACTCAGGGCATGATCAGAGATTTAATTCTTTAGGTGATAGCTCAGGTATATAGGTTCGATTCCCATTACCAGTGGGCTAGTACTCAGGTTAGCCTTTTTTTGGTTTTAATCAAGAAGTTATCTGGCAGCCTTCTGAGTATTTGAGCATCAGAGTTAACTTTGACAACTAAAAGGAATTGAAAGGATATTAGAGGCGCTGATCATGTACTAAGAACATGCTTGCAGATCTTACTCATCTGGTAGATATATCAATGTATAGATAGAGATTAATCATTTTATAAGAAGAATTAAAAAAAAAAAAGCAGCAGGAAATGCAGTTGACATCCCCCTAAAACTATGTGGTCCTTTATTGTTCACTCTGTGGATGGCCTGCATTTGTCCAAGTCCAGTGTTTAGTTTATAAGGGATTTCATGTGCACCTTGGATATTCAATCAATGCTTCCGTTATTCAATCTGGTGCACATCAGGTAATTTTATGGCACTGTAATTAGAATGTTGGAGAAGTTCCCTGAAGTTTATATTACTGTATTTGTTACTATTATTTTTATGGGGTTTGCTTCTTTGTCCTGAATTGGTTTCTAAGTTTAGATATTGTTAAGGAACATGCTGTCAAATTTTTATTATGATGTTGGCAATCCACTGAAATCAAGACCTGTGCTATTCATTTGCTCATGCATATTGCAAATTAAATTTAAAGCCTTCTATAAAATTGTTGTAGGTACTTGTTAATCTGGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCACAAAGTTTTTAGTCTTAAGAGGTATGTGTTACAGATCCACAAAGTTTCCATTCTTTTTGCTCTTTACTTCTTTCCCCCCTTTGTTAAAAAAAATTCAAGATAACAACCAACTAAAGTTTTTTGATACACAGATATCTTTCCAACATTACTTGACCCTCTCCTCGAGACTTTATGCATCTGTAAGTAACATTACTCAAGATGAAAACGCGAAGCAATTTTTGTCAACACCTAGATTTTCCTTTTCAAAAGTTTCATATTCTCCTCTAGAAATCTTGGACTTGGATTTCTCAAAATAGTGTGCTTAAATAGGTGACAGGTTGGTTGATGAAATGTTTCATTGTTTACTTGGAA</genome_strand>
        <mrna_strand>AATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATG..................................................................................................................ATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATT...............................................................................GTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAG.................................................................................................................ACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAG.....................................................................................................GCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTAAATCTTGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCNACAAGTTTTTAGTCTTAAGAG..............................................................................................................ATATCTTTCCNACATTACTTGACCCTCTCCACGAGACTTTATGCATCT..................................................................................................................................GTGACAGGTTGGTAGATGAAAGGTTTCATTGTTTACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209446" ref_strand="+" ref_description="SGN-E209446 [cLEC-53-J18]">
      <seq>aatatgacaaggttcataagtctcactaacttggaaagcaagtaaaactcaagaaacatggagatcatgatcatcattgccttcacttatagacggaatggtatgctcatcggctgcaagtataggactcttgagaaaaggttttggcaggagaagggtgctgataaggtactatatggactggatgatgtaagagaagcagatgagatcatcattgtagaaggtgaaatagataagctttcagtggaagaagctggatttcctaactgtgtcagtgttcctaatggtgcaccacagggcatcgcatccaaagaactgctaccactggaagagacaggataccagattttcatacctgtggaactgcaatgagtgcttggagaaggcgtcccggattgtgctggcaactgatggtgatttaccaggccaagcattggctgaagagcttgcccgccgtctggggaaagaaaggtgttggcaagtatgttggccgaaaaagaatgagttaagcagttataaagatgcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="47609" stop="42350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47309" g_stop="47241" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47240" i_stop="47127" i_length="114">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47126" g_stop="47046" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="150" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47045" i_stop="45070" i_length="1976">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45069" g_stop="45004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45003" i_stop="44925" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44924" g_stop="44808" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="333" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44807" i_stop="44695" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.010" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44643" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="385" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44642" i_stop="44542" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44541" g_stop="44456" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="471" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44455" i_stop="42709" i_length="1747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42708" g_stop="42650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="530" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E209446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47309" e_stop="47241"/>
          <exon e_start="47126" e_stop="47046"/>
          <exon e_start="45069" e_stop="45004"/>
          <exon e_start="44924" e_stop="44808"/>
          <exon e_start="44694" e_stop="44643"/>
          <exon e_start="44541" e_stop="44456"/>
          <exon e_start="42708" e_stop="42650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATGGTAGATAATCTTATCATTAACCTCATTTTGAAACTGGAAAGTAATATTTTATGGCTGCATCATGGGTAGAGTCGTAGAGATATAAATTACATGCCAATATTTGGGTGCTTGCAGATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAGGTAAATTTGTTCTTTAAGTTACAACCCTAACTGCATGCATGGAGTAATGGGGAAGTACGTGAAAACACAATATGCCATTACTGCTTAACTATATGCAATGCATGCTTCCAATTCTTAAGCTAAAGTTAGTCTTGCAAAAGTTTCTCGATGAGCAAATTCTTTAGCTTCAAATTCCTTTTAATAAAAAAGATATTGTGTCCTTGGCTGAAATTAATAGTTTAGTATTGTTGCTCCTAATAAGCACACACATGCAGTCGCGCAAGTAATATAGTTTATTAAGAAACGAGTTTTCGTTCCCATGGGACTTATGATCAACTTATATTTATTAACTTAATTCCACAATTCGACAAAAGTAACTTTTTAAAAGGGTGAATGTTGTTAATCACTACTACAACTAATGCAATAAATAAAATAACTAATGTGAACGACTTTAATTTGATGTTTTAAGCAAGTAAGAGACAATTCCAGGGCTGCAGCATGCATTGGATTTCATGTATCGTACCTCAGGTAGTGAACTAATTAGGTTATCAAGCTACTGATTTACATGGTTGATTTTATGATTATGGTCTTCCGACCTCTAATCGCCTACTTTAGCTGTCTAACTACATCGTTGAACGGAGATAGACAGTCCTAATTGGCGAGCATTTATTTTTCATCTTGTTTTATAACTAAGCTAGGTGTTCGTCCGAGCGTCACTCCTAAATACAAATCAATTCAACTTAATGGAAGATCAAACTTTCTATATTCTTTGGTCTATCTACCTTAGCCTCTCTCGATTTTAAGAGCAGACAAGAGATTTATCTCTATGATGGCCAATCAAGAAATACTAAAACAAGAATAAAAAGTAACTTAAAACGATAACGAAGAATTGATTCAAAAACCTTTAATACTCCACAATCATTCCGTAGCTACATCCCCTGAACAAGGGCGTTTAGCCACTCATAATGTTCAAAAACCGCAAAATAGAATTGTTTATGCGATTTCCAAAATAAAGAAGAGATAGAAAATCGAAACCTGTTAGAAAACTTGGATGTTGCTCTTGCACACCAAAAAGTAGTCGAACCCTAACAAATAGCCCTAGGGTCCTATTTATAGAAGTTAGGAAAAGTATTTTCTAAATCTAATCCGACAAGGAGTCCTATTCAAGTCAACTTTCGCTGGGCATGTCGAAAACGGGCTGGGGCACCGCGGCAGACAGTGCCTTCAGTCGTTCCAGCTGTGGCGCGCCGCGCCAAGTAGTGCGCCTGGAGTTGCTTCTGCAGTTCTAGCCTTGGCGCCTCGCGCCAGGCAGTGCGTCTGAGGAAGGTGTCGAGTGTTGGCCTTGGCGCTTTGCGACCAGGTAGTGCGCCTGAAAAGGTCGCCTGTGGTTCTGGCCTTGGCGCCTCGCACCAGGCAGTGCGCCACTCACTGCTGTTTCCTCCTTAGTTTATTTTAATGCTTCCTTGCTTCTCCTTCCCTCGAATAGACTCCATTTACCTTGAAAGTTCCTGCATCACCTAATCATGTGTTTTAGTGCACAATCATCGCAAGTTAAACAAAACAAAACTAATAGTCTCAAGATTATTCTTAAATTCACCCCAAAGTAGGCATTTATTGGCAAATTCGGCATATAAATATGCCTAAGATCAAGTATCTTACAACAAGAAGGGGATTGTTTGTCATGCTAATACATATGACACTTCACAATTATATTGTGGTAATATTTATCAAAATTTTTAAAAATTGGTTCCTACTTTATGGGTTTTGGGTTTGGGACTCTTTTGAATAACTTTAGCCTATCCTCTGGACAAATGTTTCTGAACAGTTTCTTTGTGATGTCAATTTAAGAGTTTTTTCAAGCTTCCAGTCAGTGTCTGCTGTTTTCACTGACATTGATTTTTCTGAAGGAAAATTTGATATAGTCTGAACAGAGAAGTTAGTATTTTTCCTTATTTTCCTCGTGCCTTTATTAATCAACTTCTACTTTCGATTGCCAGGAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATTGTAAGTTCCAAAACTTTTTCTTTCTCAGATATGTATTTCTGTCTGCTGATTAGATGTGATACTCTATTGCTGACCAAAGGTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAGGTGTGTCACAAGTATTTTGACATAATGTTACCATTGTGGTTTACCACTTATTTTAAAATTATTTGATATTTAGGATTATATTTCCAGCTTAATAGTTCTTCTTGCACCTGAAGACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAGGTTGGTCGTCTTGATGCATTAAACTGAGAACACTAAGCAAAAGATATGTTCCTAATGTCATTGCTCATTCCTTTTCTATTTTTTAATTTATATGTTTTCAGGCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAGGTTTTTTCCTTCTTCTCTTGTATGTTTATTTTGTGTTCCTTTCTTCGATGTCCCAAAATGTTGTCTACTTAAGTGGATGATTTCTCCATGCACTTCTTTTCAAGTTGCTGAACATTGTATTCAAGAAGTGGAAACTGCAAGAATTCTTGCAATTTCAAATCAATTGTAAATAAGTTTTCATATACTTTGGACTAGTGCCGGCAAAATGAGCCCATATTTTGGTAACCCGCCCATATTTTAATGGGTTGGGTGAGTGATTTTTTACATGAGTAAAAAATGGGTTGATACCCTTATTCAACCCATAAAATATGGGTAAAATATAGATTAGCCAAATGGGTTAAGCTTCTAACTTTTATTCACTCAAATTGATGATATCACTAAAAATATTGGAACTTCTCTTCCTTTTTATGTTCTTCTACAGAACTAATTATTTTTCTCTATAATTGAAAAGATGAAGTTCTTTGACCCTCCAAAAATATACATTTTAATTGTATATTTCTTTTGCTAATTATAATTGTATTTTTTTAAAATTTTATATTGGATATTAAAATAGTGTAAAAATAAGCAAATCATGTATTAGTATTGACATTGCTTAAAGCGCATTAAGCATGTTCTTAAAATGCATATATGCATTTACTTTGAAATTAAAAATATTTTCCTCTTGTTATTACATAAATTTATTTTATATCGAAAAGTTATAGGAATTTTGTTTTTTACTTTTGTAAGAACATTTTAAAAATATTTTCTCCATGTTGTATTCTTATGTAGAGTACTATTTACTCATGCAATATGGGTAAACTAGTATTTTGCCCAACCCATTTATTACCCAATCAATTTTTACCCATATCAAATATGGATGGGTTGAATTATTATCATTTTCTGTTGACCATTTTCAACCCGCCCAAATTTTACCCCCCTCCCCACACACACACACACACACTTGCCACCACTACTTTGGACTAACTTATCTCCATTTCTCCAATGCCTAGAAACATTTTTCATAGTCATACTTAGAGAAAGACTAACCCAAAAAACTTCTTTTGGTGGTTTGCAATTGCATGCATCTTTCTGTCAATGCAGCTAAATTACGCAAGGCATGCCTATTTTGTAATAACCATTGTCATCATTAAAGTTCATGGTTACAAATTTTAGATGAGAACTAAAAAAAAAAAGAAACCACTTGCTTGATGTAGCCGCTAAGTTGCTCTTCAAATTAGTCAAATGGCAACATAAGTCCTTGAAAAATTTGGGTTCTATTGACTTTTCATAACCCCAAACTTTTATCTTTTCTGTATTCTCTTAATCTTGGCTCTAAGAGAGTTCAAGAGATATAGAGAGACTTATATATTGATGTAGCAAGTGGAATACTAAATAAGAAAGGGTATTGCACCTTTTGGGAGGTGGAGTCAAATTTGCGTCGGGTAAGAATGCAGAATAATGTACATCTAAATGAATATACTGGATTGTTGTACCTTTTTATCACTAGTTAAGTGTATTTTGTGTTTTTGACAGTTGTGAGAAGACATGCCTTTTTTCTTTCTGTGCATGAGAATCACAGCCTTTCAGCATGCTCGGACCTAATATAATTTTCTCTGTCTGTTCATTGGTATTTATCTCAGTGGCTGCAATACACAGATGCTTCTACTTGTAACTCTCATTTGTTCAATCCATCATGCAATCCAAAGCCTTATTACTTCACCAACGGGTCAGAAAGTATTACAATTGGTTGACTTTGCTTGATTTGCAGGTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATG</genome_strand>
        <mrna_strand>AATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATG..................................................................................................................ATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATT...............................................................................GTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAG.................................................................................................................ACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAG.....................................................................................................GCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379757" ref_strand="+" ref_description="SGN-E379757 [TUS-1-F15]">
      <seq>aaaataaaaaccatatttgttgtacactaatgacataaactcaagtttgatacttttatcagttggtaaaaatgtaagcaagcaaagaagtagtgaaggccggaatgagatgtcatatgtagtatacaatctgatgacactacttgctaggtctccactacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttctgtgccagttgtagcatctccatccatgctattcttctttttctttccatcaccatgtctggaccttctaggggcttcatcctcgctctcgctttcatcatttctaaagctgttttcagtttgtggataatgtaccccttcatctggtccaacaactgagcctgcagtctcttgacccctaccttggtctggacctgaactgaatctatcgttcctttcattaaaaggagctcgctgatcctttttgacccgaggattttgagagggcggtggtgggggtggtgtaaatgatggatgcattcccattggtcgaccacctctgggtgggccaggtgctccaggacccattccacccatgaaagggggccttgctggacccatcatcatcccaaatccaccagcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51061" stop="52332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51361" g_stop="52032" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E379757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51361" e_stop="52032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCC</genome_strand>
        <mrna_strand>AAAATAAAAACCATATTTGTTGTACACTAATGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTTGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACCCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201272" ref_strand="+" ref_description="SGN-E201272 [cLEC-10-H13]">
      <seq>accatatttgttgtacactaatgacataaactcaagtttgatacttttatcagttggtaaaaatgtaagcaagcaaagaagtagtgaaggccggaatgagatgtcatatgtagtatacaatctgatgacactacttgctaggtctccactacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttttgtgccagtggtagcatctccatgcatgctattcttatttttctttccatcaccatgtatggaccttctaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51070" stop="52001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51370" g_stop="51701" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E201272" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51370" e_stop="51701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGC</genome_strand>
        <mrna_strand>ACCATATTTGTTGTACACTAATGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTTTGTGCCAGTGGTAGCATCTCCATGCATGCTATTCTTATTTTTCTTTCCATCACCATGTATGGACCTTCTAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E380019" ref_strand="+" ref_description="SGN-E380019 [TUS-1-F15](-)">
      <seq>actacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttctgtgccagttgtagcatctccatccatgctattcttctttttctttccatcaccatgtctggaccttctaggggcttcatcctcgctctcgctttcatcatttctaaagctgttttcagtttgtggataatgtaccccttcatctggtccaacaactgagcctgcagtctcttgacccctaccttggtctggacctgaactgaatctatcgttcctttcattaaaaggagctcgctgatcctttttgacccgaggattttgagagggcggtggtgggggtggtgtaaatgatggatgcattcccattggtcgaccacctctgggtgggccaggtgctccaggacccattccacccatgaaagggggccttgctggacccatcatcatcccaaatccaccagcagccggaggacggctgtgaaacatcatatcaccagggaatcgagggccaaatggtccaaaaggtcggccacccattccataaggatcaggcataggaaaaccatcaggtgtcattgatccataagaaaatccatcactcataatgcctggggggaagccccgcatcccagggaaaggcctggctccacgaaagagaactagaggaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51217" stop="52537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51517" g_stop="52237" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E380019" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51517" e_stop="52237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCC</genome_strand>
        <mrna_strand>ACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTTGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACCCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAGAGAACTAGAGGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687949" ref_strand="+" ref_description="SGN-E687949 [T3_tus_81_M02]">
      <seq>gattgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctcaacatcaggggcccccaactcanacacaaacccttcccggcacccagcanaatcaggctgcaatacccctgcctcaaggaccatctaggtgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66025" stop="63821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65725" g_stop="65313" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64505" g_stop="64121" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="798" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E687949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65725" e_stop="65313"/>
          <exon e_start="64505" e_stop="64121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</genome_strand>
        <mrna_strand>GATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCANACACAAACCCTTCCCGGCACCCAGCANAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328180" ref_strand="+" ref_description="SGN-E328180 [cTOC-21-O19]">
      <seq>attgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctcaacatcaggggcccccaactcaaacacaaaccctttccggcacccagcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66024" stop="63863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65724" g_stop="65313" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64505" g_stop="64163" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="755" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E328180" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65724" e_stop="65313"/>
          <exon e_start="64505" e_stop="64163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAAT</genome_strand>
        <mrna_strand>ATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTTCCGGCACCCAGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706258" ref_strand="+" ref_description="SGN-E706258 [FA29BH03]">
      <seq>aaacaaccaaaagccctgcccctgggttaggacttgaaaaaccttggtggctccataaaccccaaattcaaccagaaatcaagattgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttatatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggacctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctctacatcaggggccccccactcaaacacaaacccttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66107" stop="63877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65807" g_stop="65313" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64505" g_stop="64177" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="824" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E706258" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65807" e_stop="65313"/>
          <exon e_start="64505" e_stop="64177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCG</genome_strand>
        <mrna_strand>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTATATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGACCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCTACATCAGGGGCCCCCCACTCAAACACAAACCCTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727693" ref_strand="+" ref_description="SGN-E727693 [LA15BH06]">
      <seq>atcactgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggaccggcattaccacgaaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgctcattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtcccaatatttgattgtaactaacttatcttaacctaacagggaatgaaaaaatgccctaaaacagaaaactatctatctgcccttggggcgacgttgagctctttattttttaaaaaaaaaaaaattaatacacttcaccttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73112" stop="67461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72812" g_stop="72476" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="508" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68833" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="654" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68097" g_stop="67753" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="999" r_length="345" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E727693" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72812" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68833"/>
          <exon e_start="68097" e_stop="67753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAA-CTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGACTCGAGTG</genome_strand>
        <mrna_strand>ATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGG--ATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCCAATATTTGATTGTAACTAACTTATCTTAACCTAACAGGG-AATGAAAAAATGCCCTAAAACAGAAAACTATCTATCTGCCCTTGGGGCGACGTTGAGCTCTTTATTTTTTAAAAAAAAAAAAATTAATACACTTCACCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234047" ref_strand="+" ref_description="SGN-E234047 [cLEL-8-J4](-)">
      <seq>aagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69148" stop="67461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68848" g_stop="68833" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68097" g_stop="67761" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="353" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="373"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E234047" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68848" e_stop="68833"/>
          <exon e_start="68097" e_stop="67761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGA</genome_strand>
        <mrna_strand>AAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309118" ref_strand="+" ref_description="SGN-E309118 [cLEZ-1-G11](-)">
      <seq>ggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacaggtgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="72039" stop="67462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71739" g_stop="71670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68978" g_stop="68833" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="216" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68097" g_stop="67762" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="552" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="569"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E309118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71739" e_stop="71670"/>
          <exon e_start="68978" e_stop="68833"/>
          <exon e_start="68097" e_stop="67762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTG</genome_strand>
        <mrna_strand>GGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGGTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234292" ref_strand="+" ref_description="SGN-E234292 [cLEL-8-J4](-)">
      <seq>tcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaaaagatttgggtactgattggtggccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69150" stop="67462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68850" g_stop="68833" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68097" g_stop="67762" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="354" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="375"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E234292" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68850" e_stop="68833"/>
          <exon e_start="68097" e_stop="67762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTG</genome_strand>
        <mrna_strand>TCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAAAGATTTGGGTACTGATTGGTGGCCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727769" ref_strand="+" ref_description="SGN-E727769 [LA15CG06]">
      <seq>atcaaaatcactgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggaccggcattaccacgaaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgctcattcattcatgtgattcgccccctatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73118" stop="67551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72818" g_stop="72476" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="516" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68833" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="662" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68097" g_stop="67851" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="909" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E727769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72818" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68833"/>
          <exon e_start="68097" e_stop="67851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATG</genome_strand>
        <mrna_strand>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCCTATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237669" ref_strand="+" ref_description="SGN-E237669 [cLED-19-I16]">
      <seq>gaccacaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatggtgagtatgcagttcagcttctttactatacctctgactcaactaacaactcacctagtaacatttttagtctaatgcatcgttctgatacattatttttttattctgaagtgaacttggtttggctttatccaatctgttgagtaatttggtaaaattcttaatgacacaatttgttttgggctaaaaatgaattatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="72150" stop="68330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71850" g_stop="71670" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68978" g_stop="68630" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="530" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E237669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71850" e_stop="71670"/>
          <exon e_start="68978" e_stop="68630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</genome_strand>
        <mrna_strand>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAACAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309117" ref_strand="+" ref_description="SGN-E309117 [cLEZ-1-G11]">
      <seq>ctgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggcattaccacggaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73108" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72808" g_stop="72476" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="501" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68840" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="640" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E309117" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72808" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</genome_strand>
        <mrna_strand>CTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGG--C---ATTACCACGGAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365278" ref_strand="+" ref_description="SGN-E365278 [cLPT-2-C21]">
      <seq>tgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggtatcaaagtctattacaacattgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccattangaaagctgtgtctgcaggactgtatgcccttcccacccggcaacagctgatgatcaagcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="72989" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72689" g_stop="72476" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="387" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68840" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E365278" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72689" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</genome_strand>
        <mrna_strand>TGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGTATCAAAGTCTATTACAACATTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATTANGAAAGCTGTGTCTGCAGGACTGTATGCCCTTCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273674" ref_strand="+" ref_description="SGN-E273674 [cLEN-6-D22]">
      <seq>aattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73011" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72711" g_stop="72476" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71670" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="409" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68978" g_stop="68914" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="474" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E273674" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72711" e_stop="72476"/>
          <exon e_start="71842" e_stop="71670"/>
          <exon e_start="68978" e_stop="68914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</genome_strand>
        <mrna_strand>AATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365330" ref_strand="+" ref_description="SGN-E365330 [cLPT-2-D19]">
      <seq>cggaccggaccggcatttaccacgaaaaagaaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggtatcaaagtctattacaacattgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73041" stop="71405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72741" g_stop="72476" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71705" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="405" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E365330" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72741" e_stop="72476"/>
          <exon e_start="71842" e_stop="71705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCGGACCGGCATT-ACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATG</genome_strand>
        <mrna_strand>CGGACCGGACCGGCATTTACCACGAAAAAGAAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGTATCAAAGTCTATTACAACATTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275008" ref_strand="+" ref_description="SGN-E275008 [cLEN-16-B3]">
      <seq>aatatatcaggaccggaccggaccggaattaccacggaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgacgaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgccacggaatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgctgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="73047" stop="71445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72759" g_stop="72476" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71842" g_stop="71745" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E275008" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72759" e_stop="72476"/>
          <exon e_start="71842" e_stop="71745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCA</genome_strand>
        <mrna_strand>AATATATCAGGACCGGACCGGACCGGA-----ATTACCACGGAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGACGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCACGGAATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGCTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312885" ref_strand="+" ref_description="SGN-E312885 [cTOA-8-J9]">
      <seq>caagattgctttctctacgaatagccggaactgcagttgaaggcaccacattaagaattgagaagaaatactggggtggtgaagagggaaattcaatttaccgctggttccggactagttcaagtggaacaaacatagaagtcaatgatgagatgacatcctcgtacaagctgtctattcatgatataggatattttatatctgtatcctgtgaacctgttcgaaatgattgggctcgtggtcctatagttatctcggaacaagttggacctattgttccagggccaccgacttgccattcgcttgaatttcaaggatctttggttgaaggagaacgtgtgagctttgttgcttcttatagtggaggggagaagggagaatgcatacacgaatggtttagagtgaatcatgatggtggcaaagacaaaataagctgtgatgagtttctggatttgactcttgaggatgtcagtaattgtatagagcttatttatactcccatccgcaaagatacattaaaaggaagctgtaggagcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="+" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="96816" stop="98422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97228" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97229" i_stop="97304" i_length="76">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97305" g_stop="97473" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="282" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97474" i_stop="97702" i_length="229">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97703" g_stop="97787" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="367" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97788" i_stop="97876" i_length="89">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97877" g_stop="97950" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="441" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97951" i_stop="98022" i_length="72">
            <donor d_prob="0.277" d_score="1.00"/>
            <acceptor a_prob="0.129" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98023" g_stop="98122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="+" ref_id="SGN-E312885" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97228"/>
          <exon e_start="97305" e_stop="97473"/>
          <exon e_start="97703" e_stop="97787"/>
          <exon e_start="97877" e_stop="97950"/>
          <exon e_start="98023" e_stop="98122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGGGTATTTAAATGCGCTTTTAAATGCTTAATCCTCTTTACAAGCAAATAAGCTGACTAGTATGAATGTTACTGTGCAGACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAGGTATTACCAAATGAATCTCTGCATATGAATAGGTCAACATGAATTATTATCAGTTTTCAACTTCTGAATTGGTTGCTTGGAAGTTAATAAGATTACTTTCTTTTTTTCATATAACAAGATTACTCAGTTTGCTAGTTATTTAGGACAGACATGCAACCACTGATTGCCTTATTTTTTAAGTTCAAAATGATACTTAGATATGAGTTATATCTAAAACCCTTTACTACAGGGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGGGTACAGATACATCTTAAAATTATCCATCTTGAACTTGAGTCTCTGAATTCGTTTTGGTTTGTTCTGAAGTTAAAAGTGTTCATGCGCAGGGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATGGTAGGGACATATATTGTCATAGTTTATTATAACGGTGCAAAAACTTGTCGAGTAAATCAGTTTTGTTGGCAGAGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATT</genome_strand>
        <mrna_strand>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATACTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG............................................................................ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCGTACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATTGTTCCAG.....................................................................................................................................................................................................................................GGCCACCGACTTGCCATTCGCTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG.........................................................................................GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG........................................................................AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357817" ref_strand="+" ref_description="SGN-E357817 [cTOS-24-C6]">
      <seq>ttactatgtgagtggtgtgaccacaaacacaaaccgcaacaagctaattatatgcatattgctcatcctcgggtcctcaatcgccacagctgcttactggggacttagtgagaaaggatggattggatactgcttcactgtgcctatttgggtttcagcaactgcagggatttgtattttcattcctcaggctcgtaatcctaagctttggggtgtgcctcttgtgccttggttgccatcattatcgatagctatcaacattttcctactaggctcgatagataaagattcgttcatcagatttgctggctggacaggttttcttttggcgtattacttctttttcgggctgcatgcttcttatgacacagcaaaggaatttgaaaagagcaaagggtggaagaacaatattgaagaaggaaagggtacttctaatgtggttgttagcaaagatgttcctattgctcctggtaactgaattagttgtgtctaaatgatagcacaatgttacgttcctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="117428" stop="116308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117128" g_stop="116608" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E357817" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117128" e_stop="116608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</genome_strand>
        <mrna_strand>TTACTATGTGAGTGGTGTGACCACAAACACAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAATATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356090" ref_strand="+" ref_description="SGN-E356090 [cLHT-7-C21]">
      <seq>ttcatcatctgcatcattgccattcgtagtacgaaaggctcttctcgtctcaactatgttgcctcgatcattcacattgtggtgattgttttcatcatcatctgtggtctaatcaaggcagataccaagaactacaccccctttacgccatttggagttcgtggcattttcaaagcttctgcggtgttattctttgcttatgttggctttgatgctgtttcgactatggctgaggaaactaaggatccagctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgcttattggctataacactgtgtcttatgcagccttatcagagcattgatcctaatgctccgttttctgtggcgttcaaagctgatggatggagttgggcgcaatatattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="118198" stop="117179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117898" g_stop="117479" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E356090" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117898" e_stop="117479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTA</genome_strand>
        <mrna_strand>TTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGTCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTATTCTTTGCTTATGTTGGCTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGCTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCTGATGGATGGAGTTGGGCGCAATATATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356061" ref_strand="+" ref_description="SGN-E356061 [cLHT-7-C19]">
      <seq>tctgcttcatcatctgcatcattgccattcgtagtacgaaaggctcttctcgtctcaactatgttgcctcgatcattcacattgtggtgattgttttcatcatcatctgtggtctaatcaaggcagataccaagaactacaccccctttacgccatttggagttcgtggcattttcaaagcttctgcggtgttattctttgcttatgttggttttgatgctgtttcgactatggctgaggaaactaaggatccagctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgtttattggctataacactgtgtcttatgcagccttatcagagcattgatcctaatgctccgttttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="118203" stop="117222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117903" g_stop="117522" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E356061" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117903" e_stop="117522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGT</genome_strand>
        <mrna_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGTCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTATTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374886" ref_strand="+" ref_description="SGN-E374886 [TUS-15-O5](-)">
      <seq>agaaaatgacaaagcaagcacaaaaagaccggactccgttgatggctgatgaaaagcctgtgtttgtttaagagcaactagtaaagaaattcctgtacaccactttaaaattgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctttcaatcatcctgcaaccttttacatggaatacatggatttgctggttgaaaatataccaagacttttgattgttcgtggatatcataaaaatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125087" stop="124029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124788" g_stop="124329" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="481"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E374886" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124788" e_stop="124329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAAAATGACAAAGCAAGCACAAAAAGACCGGACTCCGTTGATGGCTGATGAAAAGCCTGTGTTTGTTTAAGAGCAACTAGTAAAGAAATTCCTGTACACCACTTTAAAATTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTTTCAATCATCCTGCAACCTTTTACATGGAATACATGGATTTGCTGGTTGAAAATATACCAAGACTTTTGATTGTTCGTGGATATCATAAAAATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351129" ref_strand="+" ref_description="SGN-E351129 [cTOS-6-J22]">
      <seq>agagaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125065" stop="124020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124765" g_stop="124329" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E351129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124765" e_stop="124329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357069" ref_strand="+" ref_description="SGN-E357069 [cTOS-22-B7]">
      <seq>agaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125063" stop="124020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124763" g_stop="124329" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E357069" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124763" e_stop="124329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343800" ref_strand="+" ref_description="SGN-E343800 [cTOF-12-K7]">
      <seq>tgaatcgcagcttaaaaaccccttttctcgcggttaacactttccggtttgggtagttcagacttgactgctttgaattcgggaggcaatggaaggtggagaagagattgagattgcggaggaaaatgagttcccttcagttattggacgaaaatacagtccagtggtggcgcatgacaatgatagtgcagttattgagatgtcttctgttcgtcccggatcttcctcttctctccccaaccacgatctcaagaacgtcaaagtaggtgtccatccaaatatggcatctgaagaaagagacgagtcattatccaatcatagtagcaatggtcctcaaagagaatccaaactggaattatttggctttgattctctagtaaatattctaggtctcaagagtatgacaggggatcaaattcccgcaccgtctagtccaagagatggtgaggatataactctcacgcttgagcaacctaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatcntgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactntattcacgtagttcttgttcatgtatttgtataattntttgttgctttagctaagaactcccaatttatttgccttttaacattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="140801" stop="124120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140501" g_stop="140250" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140249" i_stop="138295" i_length="1955">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138294" g_stop="138148" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="399" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138147" i_stop="136113" i_length="2035">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136112" g_stop="136034" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="478" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136033" i_stop="124679" i_length="11355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124678" g_stop="124420" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="738" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E343800" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140501" e_stop="140250"/>
          <exon e_start="138294" e_stop="138148"/>
          <exon e_start="136112" e_stop="136034"/>
          <exon e_start="124678" e_stop="124420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAAGTATTTTCTCTTTCTCTATGTTTTCTCGTTTTGACTAGTATTGACTAGTAGTGTACTAATAGCTCTGGGATTTGATGGCACTGAATTATGAAATTTTTTACTTTGTTTTTTTTAAGCATTTAAGAATTTGAGAACAATTAATAGAGACCGTAAGTATTGATGTTAAATTTATGTCTGAGCTTACTTCTAAGTGTGGATTTGGGTCAACATTTCTTCCATTTATCATGTCTATTGTTTTCCACTTTGGTTGTTAGTTAGGTATGAAAGAAATTGTTTTTCATGAAAATATTTTCTAAGAAAATGAGTTTTTTTTTTTGGTATTATATACAGCAAAAAGTATTATCTTGAAAGTGTTTTAATCTAGACAAATACTATATGGAGTTGGGGGTGGAGAGTGATGGATGGGGATGGGAGCTATGGGGAAGGGGTGAAGATGAGGTGAGTTGGAAGCTGAGAAGGAAACAATCTTGTGAAACTTGTTTTTCCTACTTTTATTGGGGAAGTCATTTTCCTTCTTTGTTTTTTCTTTTATAAAGAAAATGTTTTCAAAAATACTAACGAACCAAACATAGGAAAATTGGAAAATATTTTCGTCTGTACCGAGCACATCCTCAATGTACATAGTTTGTCTTTGCCATGGTTTGGACATTGTTTTGTAGGTAAATGGGTCAGTGGAAATACTACTGAAATCTATGGTTAGGCTTTCATATTAGTATAATTACTTGAATGTTGTGGAACTATTTTCTCATCCATCCTCTCACTTATGTTTTGAAACTTCAAGGGCATAAAAGATTAACAATTTGACTCAAAGTCAATTCTCCTAATAAACTTTGATGAATTTGAAATATTAAGTATCTCTATTTAAATGTTGAGTATGTTAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAGATTTTTTTTATTTTGAAATTGGCAACATGTTATATTCATCAACACCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAATATTCATCAACATCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACATACAAAGAGGCCAAGAAGTCTAGTAATGATTCTGCATCATCTACTAGCTGTTCTTAACACCAAAAATAAAAAAGAGAAATGCAGGAACTCCTGGTCTTCTGTATTGAACTGCTCTTGCTCTCGAAACATTTTGCATTCCTTTATTTCCAAATTGTACACCATATGCAAAGAGTATTGGCTCAATTGGAAATAGTGACATTCATCTATCAGTTATTTATCAACTAAATATACTAGTTCGGATTTGCTTCATTTGTGCGTTGTGAAGTAGATGCTGGTTCTCTCTGGGAATGCGAAACAAAAAAGCTTCATGATAAACTAGACCCAGTAGCTTCCATTTGATAACTCACATTTTAACTCTTTGATACTCTCTTAATGGAAGTGCTTACTTTCTTCGATCGCTCGAACATTATCACTTAGGGTTAAGAATATCTCAAAGCTTGCCTATGGATATACTTTTGGATGTTTGATAGCTTTCTCTACAAGTTTACAAGTTAATGTTTTAGATATTCTCTGCTCCTTGACCCCCCCCGACTATGTTTAAAAATTTAATATTTGTACACATTTAGTGAATTCTTTATTCATGCATGGTTTGAGCCAATACTACTGGTTCGGCTGTACCACTAGCTATTACTATAGATCCGTCCATGGTGCTCAACTGCTTACTCACATGCTCCAATACATTGGCTACATCCGCATGCCCACCATATTTTTTAATATTAAAGGGTTTGCAGATATCTAGACAAGAATTTTGTTTTGTCCCTTTCTTTTCTCTGGGAAATCATTTCAACCTTTATTCTGATTACACCATTTTTCAGGAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAGGTAAGAGGTACAAATTCTATGTCTCTTTTGTTTTATTTTCCACAAACTTCTATTCGCTGGTATGATATATTTCAGGAAACTCGTTTTTGCTCTCGTCATTTTTTACTTAATAACTTTCTTGAGATAGTTGCATTTTGACATCATTGGAGTAAATTTTAAGTTTTCTGGTGGGCAATGCAAATCAAAGTCAAGACACCAAAGCTCTTCCGTCTATCTAGAACGTACTTATAGTGCTTCCGGCTACCATCTCTGTTAGTCCAGCATGCTTTCCTCTCAGCAACGTTTCCTCCAAATTTCGTATATCTTTTACTTTCTTAGTCATATTGGGCTCTCAAAACTTTATCTGCGGATTTTCTTTAAGTGATTATTTGAGTTTCCTCATTTGAAGGTTAAATTTTTGATATACAAAGTATTCTTTCTAGCTAGAAAGCAACTAAAAATGTACATCAATAGTTTTTGATCACATTCTTGTACATATTTTGGTAGGGTAAATTTTTGTGTTTTTACTCATATTTCCTGTTATTCATTTTTATTGTCAAGACTCAAAATGGAGAGGAGAATGTTCTTTTCCTAGTTGAAATCGTGCGAGATTTTAGAAGGCAATGCATGTAGATTCAATTGGTCTGAAAGAAGAATAAATTTTGTTAATAAAATAAATTTAGGATGCAGAAATTTGTTGGGTTTCTGAACGCACTGAGATCAGTCAACATCTAATTCCATTCAAAAAATAAATGGAAATGCATTGTATCTCTATTTTTTTTGGTGCAAAGAGCAGTGTATAGAGGACATAGACCAACTTGTTGATTTGTTAGGAACTTTGTTACTTTTTTTAGTACCCTTAATGCTAGGGATACAATTTACCAGTTTCACAAAACAAAACAAAATATGAATACAACAATTTATCAAAGCATATGCAGTGTATAACTAACTCGGAGCTCAACAGGTTTTAAACTGTACTTGCGAATGAGGTTTATGCTCAACAAGTGTCAAAACTCAGCCAATGCATGCTAATCTATTCAAATAATAGTTCATGGTGTCAAATACACCCAAACAACTTACTACTGAACTTGGCTGGTTTGCTTTATGTGGCTGGTTACAAACAGTTCATGCGTCACTCAACACAACTTTTCGGAAAGAGGGTTATTTATATGCAGTAGGTGTTTCTCTACCTTCACAAGGTAGGGAAAAGGCTGCGTACACATGACCATCCTCAGAGCCCACTTGTGGGATTACACTAGGTATTATGTTGTTGTTATAGTAGGTATCTCCCGTGCAGCAGTGAGGAAGCAAACTGTGACCCCCCTCTTCTTCAATGCCTAGTGGCAGATGAAATACCATCACTATATCGTAATATATTCAGGATACCTTTTGTTATGGCATGCACAGTAAGGGAGCTATTTACCAGCTGGGTTTTGGGGGAATTAGAATATCATCTAGGAAGGTTTGGAACACAGTGCATGCTTGTGTTTGTTGGGTATTGTGGAAGGGAATGAATACCAGATGTTTCAAAGGGAAACGAGGGTGGTTTCAAGACCTAGCAGGCTCTTATTTCTGTTGATTAAGATGATGAGATCAAATATAATAGATAGTTATCCTGGCCAAGAATGTGTCTGATCGCACCCTAGTTAAGAAAAAGCCATGGAGTCTACTGTAAGGAAAATGAACTAAAAAGAAAGTAGATTATGGTTTACTATCCAAGCTTGCTTGCTTTAGGTAATTTGGACAGACAGGAGTCAATCCTAATGGAAAAGCAGAGTCATCTGGTAGATTTTGATACAAATGTTCTTTTTATGGTCGTTTTGGTTTAACATTCTGGATGTATATGGTTTAGAGTTTTATTTTGGTTGCAAAGCTCCGCTTTTGTTTTGTGGGAGACTGGATTTTGTACTGCAGTGTTCTTCCACCTCTTGTTTGCTTTTTGTATAAAATAAATTGTTTACTTGTCCAAAAAAATGTCCTTAACAACTACTTTCTAACTTCAGTTTTCTCTCAATTTTGTGGTTTTATAATGTTCTTATCAATCTTGTTGTTCCAGTATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAGGTACTTGAACTAATTTGTTGAGCATCGTTTTATTTCCCTGAAGCTTTCCGTGCCATGCACAATTAAGACTGTATCATGTTCATAGAAGTCCTGAAGTAGAATTCACTTTCTTGATTCCCGTGGATTCATTTTCATCTCCTATGCCTATACCTAGTGGGAAAAATTGGGGACTTCCCTTTTCTGAATAAATAGTAAAGGACAGTAGGCTATATAGGGCTGTAAAATGGAGGTTATAAGAAGACAACAGTATGTAATACTTAAGGTTTTCGACTTAGAGTGTCACTATATAATTGTCAACTTTTAATCACACCATTCCAAATTCATTCTTTTATAAAAGTGTTAACATGCAATTACTCCCATTTTCTTGTGAGAGAATTTCCTTCTTATTGATTTATGAACATATTCGAGGTGATTTAAACTTCCTTTTCAAAAAAAAGGAAGAAAACGTTGGAGGTAATTTAGATGTCCTTATATAAGAAAAAAACATATTGGAGGTAATTTAAACTTTAAAAGCTGGTTCTTTTGATCCCTGATATAATACAAAGTTACCATTTTTTTTTAAAGAAGAAGCTGTTTCGTTATGATAGCTAGGATCTTTTCCAGTAATGTGGGAAACAAGTGGAGAAAAGAAACAGGATATCTTTAGTTTAGCTGTTCCTAGGTTTAGATTAATGTTTAAGTTGTTTAGCTGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTTTAGATTAATGTTTAAGTTGTTTAGGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTAAGTTATCTTTTGTTTCCCTGGATATCTGTAATCCTATTTGTCTTAGGAGTTCAGTTATAATTCAAACAATTAGTTTTATCCTTATTAGAAAAGGATTTTAGTCAGCTCATGAAAAAATATTCATATGGTGTTTAATTCTGTATGGGGAATTTTATTTTGATCTCCCAATGGTTTTCGCAGAACCTTTTATTGCTTATTTGGTGCTTTATGCAACCTTAACTGAGGAGGTTATTCCTAGGTAATTCTAGCTTCTTTGGTTTACTGCTTTATTTCATAGGTGCTTGAATGCTAATGGTTGGTGAATCCCCTCTATCCTCCACCAGCTATTGTTGGCTCACACTGAACTTCCTTAAAACCATTCTAGATTTAAATACATAGCTACTGCTTAGTTCTTTTTTGTCATCCCTCTATCAATCAGCCATTTGTCTCACACTGACTTCCTAAAGATTATTCCAGCTTTAGATATGTTGATAACTATGTTGTTGCATTATTCTTTATCTTGTAAAGAAGAAAGTGTGACTCACATGTTTGTTTCCAATAAGAGAGGATAGATGTGGAACTTGTTGATGAGCTTTAGATATGCAGCTAATTGCTTAGTTGCACTGTTCATTCTCTTGCAAAGAAAATGAGAGTGACTGTCAGATGTTTGTTTCCACAGAGAAAACATAGCTGTGAATTTTGTTGATGTATTCATGGTTTCATTGATGCTTGATCATTGTGGTTGGCATGCTTCCTCTGCGGACACCATTTTTCCTAAATAAACAAGCTGAGCTTTTAGATTTTATTGCAAAGAGGAAGATGTTGTAATCAAAAGAGAATAATAGAACACGCATAAATGAGTAACGATATGAGTGTTATCATACATCACTTTAATGACAACAAGGCCCCTAAAGGCATCTTTGATTTAGCTAACCATCTCTTATCATCACTCAGATTTGTTTCTAAAAGTAATTTTAATATTGTTTCTAAAATTCTAAGTGATCGAAACATCATAGGTTTCTTGTCCTAAAAAATAAAAAAACTGATTGGGGAGGGTCGCAAGCCTCTTAATCACACTATCAAGAAATAGAAAAAATAGCTTGAACTAAGAAACTCACGGGAAGAGGTATTTACTGATTGGATGACGAGATTCTTCTTATGTTGTGCTCAAACGAGGATTTTTGGCCTTGTGGTATTGGTATATAAACCCTTGCAGAATTCAAGAAAGACTCGAACAGATGTAACGGTCACAACAGGTCCCAATGCTTCTTTCCCCGGACGTTGTTGGTGAATGCACAAGGAGTAGTTTCTTAGAAAGACTTTGATATCATGTGAGGAAGAAGTTCTTTTGCTGCTTTTACTAGCTTGCTTTGATATCAGATGATTTTTTTTTTGTTTCAGAAATGGAAATCTCTGCATCCTACTATAGTGAAACACAAAATTTTGAACATTGTTATAACTTATAGGTTATCTACCCTCTCTCTTGCGTGTTTCCCTCCGATTCTAGCTTCTTTTGCTGATGTTTATTTATGGAGTTACTTTTTCCTGCTAAATACTGAACACAATGCAATATAGAGTTGTATATATCTGCAGTTTCTAGTTCAATCTTCACTTAATTTCAACTTGTTATCTCCTATGCTGTCAATTTGTCTTATAACCTTCACATGTTCTTTTATCTTGTGTGTCAACATTTGAAAATAAGACTTTGACAATGCTTGGACGTACCTGGATAGTTAATTTTTGTATTGATGGGTTGCTTAAAGAAGCTCTTGAGTGCATTTTAATCATCTCTATATGTGAATTTTTTGAAGCCAACTGCTGATAAATCTGGCACGCTGATGGGAGTGTTTATGCCATGCTTGCAAAATATTTTGGGGATCATCTACTACATTAGATTTTCGTGGTAAGTTTGCTTACTATCTAATGTATCATGTGATTTATATCAAACTCTTTTTTGGTTAAAGTTTCATGTCTTAATAAAAGTGGACTGGTTCTGTATTCCTAAACGGGCACCTCAAGGACTATGGTGAACCTGCTTTTCAGTTTCAATACTACACATTTTGCATGTTATACTTGCATCTTGCTGGTTTCTCTTACTATATGGAAGTTTGGTGGGTGATGTTCAAGCAATTTAGTCTACATTACTATAGTACCAATCAGCTCTTCTCGTTACTCCAGAAAGGCGTGGTTATACTGGTATCATGAAATACTCAAACTGATCTGCTCCTGCCCCCACCTTTGACATTTTCTAATATAGAAATTAATTACTGTGAGTAGAGATAGAAGGGGAGAAAAGTTATCTTCAGGTAAGATAAGGAAGTGAAAAGGAACAGGAGAAGGGAACAATGAACAAATGCACCCACTACCTATGATCTACTACTGTTAGTTTGATGATATCCTTTTTCGCTCCAACTCAAATAACCACTCTATTTGTGTTGGTTTGTTTTTGTGTATACTGCAGGATTGTTGGTATGGCAGGCATTGGCGAGTCATTGTTGCTGGTTGTGTTCTGTGGATCATGTACATTCCTGACCACGATATCATTAAGTGCTATTGCAAGCAATGGTGCCATGAAGGTGGGAAAAAAATCATCAGATACAACTTCTGTGCAGATTAAAAGGATAGATTTTTAATTTCGTTTCCAGTATAACAAGCTTGCTTTGATATGTGTATCTCTGTTGCCCAGCATTGGCTAGACAATAATATGGATGAATTCTGTGTCTGTCATTCCACCTTATGTAAAAGCTCAACCCGTTAGAGAGAGCATACTTTTAATTACTTAACTATGTGTTTCAACGATCTCCTTGTAGCTTATTTGTTAAGTGATATCCTAGATTTGTTTTCTCTAATCTAGGGTGGTGGCCCTTACTATCTCATTGGTCGTGCATTGGGTCCAGAAGTTGGTGTCAGCATTGGGCTCTGTTTTTTCCTTGGGAATGCAATTGCTGGTGCAATGTGAGTATACATCTGATGTTATATTTTTGTGTGAAGGAACTACTTACTTAGCTGGGGTGTGGGGGTGTGGGTGGGGGTGGGTGGGTGGGTGTGTATGCCAATGTAGGTTAAGTTGCTTCATTATTTCAAACTATCTACAAAAAGATTTTGTGTTGATGCCTGCTCTTATATGTTCCTGCCGGTTAGGTATGTACTGGGAGCCGTAGAGACTTTTCTAAATGCTGTACCAAGTGCGGGCATCTTTAGAGGTATTCCTTAAATGAGATTGAACTTTTATGATTTAGAAAATGGCTTGGTGTTGTCTGTACTTCTACGGTAAAACCATCTGATATCCTTCTGGCTTTATCATAACATTGATACAAGTAACTTATTGTTGATTTTTGATGGATAGTACTGTATTATTTTCAAATTCATTTGTATATCTGAACTTCATTTGTCATCAATGCAGAAACTATCACACGAGTTAATGGCACAGATATTGCAGAGCCCATTACAAGTCCAAGTTTGCATGACCTGCAAATTTATGGGATTGTTGTATCTATTCTTCTCTGCTTTGTCGTGTTTGGTGGAGTAAAAATGATCAATCGCGTTGCACCTGCATTTCTTGTCCCTGTTTTGTTCTCATTGCTTTGCATATTTGTCGGCATCTTTTCTGCGAGGCATGATCATCCAGCAGGTTTATGTTGTCTATGCCTTATTCTTATTCTTTCCTGTCTTACTTGAGAGTTTTTTTTAAAACTGTGTGTTATTCTTATGTGCTATACACTTCCCTTGCATACTCCCTCTGTTTCATTTTAGGTGACTTACATTTTTTAATTTGTTTCGGAAAGAATAACTACTTTCTTGGTTTGGAAATTCTGTAACTTTAAACTTCCTATTTTACTATTAATTACATTCTCTTATTGTTGAAAATTGTCCTAACATGTTCAAGACCACGAATTCTCAAGTACTTTTGGTATGTGACAAAAGTTTTACTTTCTTTCTTAAATTTCTTGCCTAGTCAAACACTACATTCATCAGCTTTCGCTCTGTTAGTGGAGTCTATAGTGTACTGGTATTATTGAAATGGTTTTTAGTTCTTGATCTTAATTTGGTATCTCAACCTCGTTTATTTTCACTATTTTATGTTGCTTTAGTGATGAGCCTTCAGTAGTTCATACACCAATCTAGTTAATTTTATTAGCTTGAGGTCATCATGGAGTATAGTAAAGTCAAACATTGTTGTTTCTTTCCTTTGAACAAATTGCATCTTTGAAGCCATATATGGAAGTCAAGGGCTACATATTATTGATGATAAGCTGTAGAATACCAATTAATTACTGGTTTTGCTAATAAGAATAATGATTCTGAAGAACTATGAATCCAGGCAAAATATAGCTAACTTGGAAAGGCAATCAAGTAACATCAAAATCGTAAAACCACTACAAAAGAACTAGAGAAAGTTACCCAAAAGTAGTATAAAGTAAAGTAAAGATGGGTTCCTGTGTCATGATATCTCGAGGACTGGTGTAAAGTAAAGATGATTTAATTTTTGTGAATTATCTCTTTATTGATGGATATAGAAGATTCATATGGTCAATCCCAGAGGTATTTGCAAAAGTGTTACGTATGTCTGTTCTCCCTGAAGTTTTAATACTCATGGTTGTCATTTCTCATGTGACACCACCTTTTTACTCTGTTGCTATGCATGGTACAGTGGGGATCACAGGGTTGAGTTTGGAATCTTTCAAAAACAACTGGGGGTCTGCTTATCAGATGACTAATAATGCTGGAATTCCAGATCCCAATGGCGACATATACTGGAATTTTAAGTAAGTCATACAATTATTTTTGTTGGTTCCTTTATTTTGCACCATCTTTTTGCTAGGATTAGTTATTTGTTCTTCTTTCTGCCGTTTACTTCAATGTGCATACTGAAAGCATTTAGAACCAAGTCTTAACATTTATTTCCTTCTCCATGTTAGTGCATTGGTAGGTCTCTTCTTCCCTGCTGTAACTGGGATCATGGCAGGTTCGAACCGTTCGGCATCTCTAAAGGACACTCAACGTGCAATTCCTGTTGGGACCTTAGCTGCAACTTTGACTACCACCAGTTTATATCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAGGTATGTATGAGTATCTTTTTATAGTTTACACAGCTCACATTCTTTTGTACTGCTCTTTTCTTGTTTTCTCAGAACTCCCTGTTTCCTCCCATGTGTCATCTATATTTGGGCAAGATTGAGTGAGGGAAATACAAAAGCTAAGATTTTCACTGAAGGGGCCATAATGTACTCATTGTGATAGTTTTTTTTCCTATTAGTTTATGAGAAATTTTGTTACGTGTCCAGATCGTTATGTTGCATTTTTGTTCCATTTGATATAAAAATTCAAAATTTTACGAGAGAAATATGAAAGGACATCATTATCAAAATAAGAAATATGAAAGGACATGTGAAACTCTCACCACCTCTCATTTAATTGTTGATAGAGTTAGGGCAATTGTGGTAATTTGCAGTTTTCATATACTCCCTTTGTCCAACAGAAGTTATCCACTATACTATTTTAGGATGTCCAACAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTCCCTATTAGATTTTTCAAGACACTGTTTTTATTATATTCAAAGGGTATTATAGTAAAATTACTCTTCTATTAATAGTTTCTTAAGAAGTGTGCAAAGTCAATAGTAAACAAGTATTGTTGGACAGAGGGAGTACGTTGCTTATGAGTTAAAAATCTGAAACTGTGTGACCTTGGGTCACTTACTTTGTAGTGGTTATTCCTCTCTAACAAAAATTCAATTACAGTAAAATCCCATTGCCCTGGTTCATATTATAATTAACTTGTATTACCTACTATATGGAGGTACATATAAGCTTAAAAAAAGAAACAAAAATAAAATATCCCTTTTGTCACCACCGCTAAACCAAAAGAATAGAATTTATTTTGTGGAAATTATATTTTTCAATTAAGTGGAGTCTCCATTTAACATCTCTTTATGTGGTTAATCTTTCACCCAAAAAACATTCTAGGAAAACTGTACTTTCTGATCGAAGAACTTTGAGAGGTTTCAGAAATAATATAGCTCGTAATTTTAACAAGAAAACGAGCAATGCCACAATAACAGGAAAAAAGAAATATTAGTGATTAAACAGGAGCATAGATGTCTTTTTTATGGGTATAGTTTGTGCTGTAAAGTAAGGAAAGGAGCCTTATGTGCGCATATTAGAGCAAGAAGGGGTATTATTGTATGTAATGTTGCTAAAGTAAATAATTAGTACCTGTAGTTTAGCCAACATTATATCCCTCTTTAGCTGAGGTACAAAAGAGTTGGAGGCCTAAATTTGTGAAAAAAATTCTGGCTATGGTGGGACCACTTATACTATAATATACCAATGATATATCTATTTTGGAGATGGTGATCATTTTGTTACTTATCTGTTTGTGCTCTAAAATTCTTGTTCGTTGTGCGATTGTATGAAGTCTAGTTAGCTAATTAGCAGCGTGAAGATTAGATGACTTTTATGTTATATGTACAGGCATGGCTTATTTATTGGTTACTCCCTGTAGAATTCTGAATCATGGATTTTGGCATCATACAATTTCTGTCTATGAAATTAATGAATTAGCACCTTTTAAAAAGATTTAAGTGTCTGTTTGAGTTATTCTTGAGCCATTTCTGTTCTTCACGTAGACACTGCTTGGTCGGTCCTACTGCTATGTAGTGTGCAAATGAACTTCTAAGATTGATTAGCTGAATGTGATATAATATAAGTTTTAGGGTAAGTACATCGTCAATCCCTTGAATCTGCTAATAAATATCATTTAGACACTCGGAACAATGACATGTTCCAATTGAGCACCTAAACACATGGTAAAGTGTTCCTATAAGATATCTCCGGCTCATTTTAAAAAGTTTCTACATGTGTTCACAAACATCCATTATGTAGATAAGTTAATCACATAAAGTGTGCATCCTTTTTTAATTATCCATATCAACATCGATGAGAATTGCATAAGGAATGTGTGAATATATTGGCTATTATTTGATTAAAAATGGAAAATAATGTGTATGAATATATTGGCTATTACTTGATTAAAAAGTAATAATAGGTACAGACTTTAAATGGCAAACCTTCTTTTATTCTTCACTTTTTGTATGGTTATTGGAATAGACTGAATCACTAGAAATTCACATACTTCCCTCGAGTACTTTAATGTATTAAGTTATTAATTGTACAAAACAGAGATTGAAGACTACAACTTTATCATTCAGGAATTTCTTTTCTTGGTTCACTATGTTTAAAAATGTAAGATTTTATATTTGTATGATCCTATTGAAACATTCTATTGCATATGCAGCAAACCAGGTACATCCGAAAAACTGGTATCCTATCCCACTTATATTTTGTCGTCCGTGGGGCAAGCTGCCAGAAAATGTGCCTTGCCATCCAAAGCTTGCCGACTTTGCCAACTGCATGAAGAAAAAAGGCAGGGGAATGTCCATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATC-TGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</genome_strand>
        <mrna_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCNTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTNTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTNTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313459" ref_strand="+" ref_description="SGN-E313459 [cTOA-13-F5]">
      <seq>ttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctgtaagatacaggtgttctgcattgcagaggaagattctgatgcagagggattgaaggctgatgtaaagaagtttctttatgacctccggatgcaagctgaagttattgtcatttccatgaagtcatgggaagccgaaggggagcagcaagaatctgtcgaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125586" stop="124523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125286" g_stop="124823" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E313459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125286" e_stop="124823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</genome_strand>
        <mrna_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275089" ref_strand="+" ref_description="SGN-E275089 [cLEN-9-M23]">
      <seq>atctttgtctctattatcgatggagactaccatgaacgtgctgaggatgctaaggacgcttgcaaggaactaagtacctatattgactacaagcaatgtgaaggtgtagctgagattgttgttgccccaagcatgtctgaaggctttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaatacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="125731" stop="124689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125431" g_stop="124989" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E275089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125431" e_stop="124989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</genome_strand>
        <mrna_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAATACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374887" ref_strand="+" ref_description="SGN-E374887 [TUS-15-O5]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgcgatctttgggagcaaaccaggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="130461" stop="127588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130161" g_stop="130103" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130102" i_stop="129469" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129468" g_stop="129068" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128049" g_stop="127888" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="622" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E374887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130161" e_stop="130103"/>
          <exon e_start="129468" e_stop="129068"/>
          <exon e_start="128049" e_stop="127888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204796" ref_strand="+" ref_description="SGN-E204796 [cLEC-14-M21]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaagagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="130461" stop="127600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130161" g_stop="130103" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130102" i_stop="129469" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129468" g_stop="129068" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128049" g_stop="127900" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="610" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E204796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130161" e_stop="130103"/>
          <exon e_start="129468" e_stop="129068"/>
          <exon e_start="128049" e_stop="127900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAAGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279004" ref_strand="+" ref_description="SGN-E279004 [cLER-2-F24]">
      <seq>gccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0026M05-jDuPW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0026M05.1" temp_strand="-" temp_description="C02HBa0026M05.1  AC215361.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0026M05 sequenced_by:kribb upload_account_name:korea">
        <position start="129682" stop="127614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129382" g_stop="129068" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128049" g_stop="127914" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="451" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0026M05.1" gen_strand="-" ref_id="SGN-E279004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0026M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129382" e_stop="129068"/>
          <exon e_start="128049" e_stop="127914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</genome_strand>
        <mrna_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2090" PGL_stop="3754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2090" e_stop="2111"/>
            <exon e_start="2792" e_stop="2829"/>
            <exon e_start="2906" e_stop="3120"/>
            <exon e_start="3573" e_stop="3754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2090" e_stop="2111" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2112" i_stop="2791" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2792" e_stop="2829" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="2830" i_stop="2905" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2906" e_stop="3120" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3121" i_stop="3572" i_length="452"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="3573" e_stop="3754" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2090" stop="2111"/>
              <exon start="2792" stop="2829"/>
              <exon start="2906" stop="3120"/>
              <exon start="3573" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2792" stop="2829"/>
              <exon start="2906" stop="3120"/>
              <exon start="3573" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAATTCTTAATTCTCAAAA : ATTGAAGGCTCATTTTCAAGATAATCCAAAAGACTTAG : ATCTTCTGAAGCATGATAAGATGTTAAGCAAGAAAGCACCTGCCGCTCACCTACGTGATGTACCTGACTACCTATTAGATCCAACGACACAAGAAGCTAGCAAGATTGTGAAGCTGGCCAGAGCTGCAATGGGCAATACTAATCCATCTCGTGGCAAAGGATCAAAGGGAAGGTTCAAAAGAAGCAGAGACCCTCTTAAAACATTTTCAGCTGAG : GCACCTAAGCGAGCAGGGAAAGGCGGGATGAAAAGAAAGGTAAAAGATACCGATAATGGCCATTAACATTAAAAGGAACACCCTGCCTAGTTGTTTGATACAAGGAATTGTAGTTTATACGAAATTTGAATTATATTTATCAATCAATTTTTTTTGAATGCTTTCACTAACCCTAGTCCCAG</gDNA_template>
            <first_frame> M  K  F  L  I  L  K   : N  *  R  L  I  F  K  I  I  Q  K  T  *  :  I  F  *  S  M  I  R  C  *  A  R  K  H  L  P  L  T  Y  V  M  Y  L  T  T  Y  *  I  Q  R  H  K  K  L  A  R  L  *  S  W  P  E  L  Q  W  A  I  L  I  H  L  V  A  K  D  Q  R  E  G  S  K  E  A  E  T  L  L  K  H  F  Q  L  R :   H  L  S  E  Q  G  K  A  G  *  K  E  R  *  K  I  P  I  M  A  I  N  I  K  R  N  T  L  P  S  C  L  I  Q  G  I  V  V  Y  T  K  F  E  L  Y  L  S  I  N  F  F  *  M  L  S  L  T  L  V  P  </first_frame>
            <second_frame>  *  N  S  *  F  S  K  :  I  E  G  S  F  S  R  *  S  K  R  L  R :   S  S  E  A  *  *  D  V  K  Q  E  S  T  C  R  S  P  T  *  C  T  *  L  P  I  R  S  N  D  T  R  S  *  Q  D  C  E  A  G  Q  S  C  N  G  Q  Y  *  S  I  S  W  Q  R  I  K  G  K  V  Q  K  K  Q  R  P  S  *  N  I  F  S  *   : G  T  *  A  S  R  E  R  R  D  E  K  K  G  K  R  Y  R  *  W  P  L  T  L  K  G  T  P  C  L  V  V  *  Y  K  E  L  *  F  I  R  N  L  N  Y  I  Y  Q  S  I  F  F  E  C  F  H  *  P  *  S  Q </second_frame>
            <third_frame>   E  I  L  N  S  Q  K :   L  K  A  H  F  Q  D  N  P  K  D  L   : D  L  L  K  H  D  K  M  L  S  K  K  A  P  A  A  H  L  R  D  V  P  D  Y  L  L  D  P  T  T  Q  E  A  S  K  I  V  K  L  A  R  A  A  M  G  N  T  N  P  S  R  G  K  G  S  K  G  R  F  K  R  S  R  D  P  L  K  T  F  S  A  E  :  A  P  K  R  A  G  K  G  G  M  K  R  K  V  K  D  T  D  N  G  H  *  H  *  K  E  H  P  A  *  L  F  D  T  R  N  C  S  L  Y  E  I  *  I  I  F  I  N  Q  F  F  L  N  A  F  T  N  P  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2092" stop="2111"/>
                    <exon start="2792" stop="2829"/>
                    <exon start="2906" stop="3120"/>
                    <exon start="3573" stop="3638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILNSQKLKAHFQDNPKDLDLLKHDKMLSKKAPAAHLRDVPDYLLDPTTQEASKIVKLARAAMGNTNPSRGKGSKGRFKRSRDPLKTFSAEAPKRAGKGGMKRKVKDTDNGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5868" PGL_stop="5284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5868" e_stop="5284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="5868" e_stop="5284" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5868" stop="5284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAATGGTCTTGAAGGTATATGGAAACTATTCAACCAAGTAGGCGAAAACTCGGCTGAATTACAATTAAGTCCCTATGGAGGAAAGTTGAGTGAGATATCGGAATCTGAAACACCTTTCCCTCATAGAGATGGAAACATATTCATGATCCATTATGGGGTGAATTGGGGTGAAATGGAAAGTTCTAATAAGCATATATCTTGGATTCGAAACCTTTATGGATACATGGCTAGGTATGTGTCAAGATCTCCTAGAGCTGCTTATTTGAACTATAGAGATCTTGATTTAGGAGTGAACAACAAAGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTGGTCAAAATCAAGACTAAAGTTGATCCAACAAATTTCTTTAGGAATGAACAAAGTGTTCCTCCTCTATATATATAATTTATGCACTCTACAAATAAGGCTTATCATATATAGTAGTTCTTTTATGTATATATATATAGTAATATAGTACTGAAAAATAAATGTAGCCAGGAAGCCTTCCAAAGATATTTTATAAGATGTATTATTGTTTGATTT</gDNA_template>
            <first_frame> I  N  G  L  E  G  I  W  K  L  F  N  Q  V  G  E  N  S  A  E  L  Q  L  S  P  Y  G  G  K  L  S  E  I  S  E  S  E  T  P  F  P  H  R  D  G  N  I  F  M  I  H  Y  G  V  N  W  G  E  M  E  S  S  N  K  H  I  S  W  I  R  N  L  Y  G  Y  M  A  R  Y  V  S  R  S  P  R  A  A  Y  L  N  Y  R  D  L  D  L  G  V  N  N  K  G  N  T  S  Y  E  Q  A  R  V  W  G  V  K  Y  F  N  N  N  F  D  R  L  V  K  I  K  T  K  V  D  P  T  N  F  F  R  N  E  Q  S  V  P  P  L  Y  I  *  F  M  H  S  T  N  K  A  Y  H  I  *  *  F  F  Y  V  Y  I  Y  S  N  I  V  L  K  N  K  C  S  Q  E  A  F  Q  R  Y  F  I  R  C  I  I  V  *  F </first_frame>
            <second_frame>  *  M  V  L  K  V  Y  G  N  Y  S  T  K  *  A  K  T  R  L  N  Y  N  *  V  P  M  E  E  S  *  V  R  Y  R  N  L  K  H  L  S  L  I  E  M  E  T  Y  S  *  S  I  M  G  *  I  G  V  K  W  K  V  L  I  S  I  Y  L  G  F  E  T  F  M  D  T  W  L  G  M  C  Q  D  L  L  E  L  L  I  *  T  I  E  I  L  I  *  E  *  T  T  K  E  T  Q  A  M  N  K  Q  E  F  G  E  *  N  I  S  T  T  T  L  I  D  W  S  K  S  R  L  K  L  I  Q  Q  I  S  L  G  M  N  K  V  F  L  L  Y  I  Y  N  L  C  T  L  Q  I  R  L  I  I  Y  S  S  S  F  M  Y  I  Y  I  V  I  *  Y  *  K  I  N  V  A  R  K  P  S  K  D  I  L  *  D  V  L  L  F  D   </second_frame>
            <third_frame>   K  W  S  *  R  Y  M  E  T  I  Q  P  S  R  R  K  L  G  *  I  T  I  K  S  L  W  R  K  V  E  *  D  I  G  I  *  N  T  F  P  S  *  R  W  K  H  I  H  D  P  L  W  G  E  L  G  *  N  G  K  F  *  *  A  Y  I  L  D  S  K  P  L  W  I  H  G  *  V  C  V  K  I  S  *  S  C  L  F  E  L  *  R  S  *  F  R  S  E  Q  Q  R  K  H  K  L  *  T  S  K  S  L  G  S  E  I  F  Q  Q  Q  L  *  *  I  G  Q  N  Q  D  *  S  *  S  N  K  F  L  *  E  *  T  K  C  S  S  S  I  Y  I  I  Y  A  L  Y  K  *  G  L  S  Y  I  V  V  L  L  C  I  Y  I  *  *  Y  S  T  E  K  *  M  *  P  G  S  L  P  K  I  F  Y  K  M  Y  Y  C  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5868" stop="5422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGLEGIWKLFNQVGENSAELQLSPYGGKLSEISESETPFPHRDGNIFMIHYGVNWGEMESSNKHISWIRNLYGYMARYVSRSPRAAYLNYRDLDLGVNNKGNTSYEQARVWGVKYFNNNFDRLVKIKTKVDPTNFFRNEQSVPPLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6997" PGL_stop="6277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6997" e_stop="6277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="6997" e_stop="6277" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6997" stop="6277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6996" stop="6453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTAAATGCCTTTCTCACAAAATTATGAACTCAAACTCAAAATCACAAGTTATCTACACTCCTAAAAACTCATCATATTCCACCCTTTATGACTCTTTTTCAAGTAATCTAAGGATAACTTCCGATTTCAAACCATCAATTATTTTCACTCCTAATGATGAATCTCAAATCCAGGAAGCTATACATTGCTCCAAGAAACATGGCTTGCAAATTAGAATTCGAGGCGGTGGACATGACTATGAGGGACTTTCATACATTTCTGAAACCCCGTTTGTCATAATTGATCTTAGAAACCTAAGAGCAATATCCATTGATACGGAAGACAAGACTGCTTGGATTCAAGCTGGCGCGAGACTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTAGCCTTTGTTGCTGGGGTTTGCCCTACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGGTATGGTATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAGTTAATTGATGCTAATGGACGTATCCATGATCGAGAATCAATGGGTGAGGATCACTTTTGGGCTATTAGAGGAGGTGGAGGGACTAGTTTTGGTCTCATTATCTCATGGAAGGTGAAATTACTTGATATTCCA</gDNA_template>
            <first_frame> L  N  N  L  F  L  S  L  N  L  P  N  F  I  I  M  G  *  Q  N  S  *  *  L  S  *  M  P  F  S  Q  N  Y  E  L  K  L  K  I  T  S  Y  L  H  S  *  K  L  I  I  F  H  P  L  *  L  F  F  K  *  S  K  D  N  F  R  F  Q  T  I  N  Y  F  H  S  *  *  *  I  S  N  P  G  S  Y  T  L  L  Q  E  T  W  L  A  N  *  N  S  R  R  W  T  *  L  *  G  T  F  I  H  F  *  N  P  V  C  H  N  *  S  *  K  P  K  S  N  I  H  *  Y  G  R  Q  D  C  L  D  S  S  W  R  E  T  R  G  S  L  L  *  N  R  G  K  K  *  K  I  S  L  C  C  W  G  L  P  Y  C  W  C  W  W  T  L  *  W  W  R  V  W  Y  D  V  T  K  I  R  Y  C  C  *  *  H  H  *  C  K  V  N  *  C  *  W  T  Y  P  *  S  R  I  N  G  *  G  S  L  L  G  Y  *  R  R  W  R  D  *  F  W  S  H  Y  L  M  E  G  E  I  T  *  Y  S  </first_frame>
            <second_frame>  L  T  I  F  F  F  L  S  I  C  L  I  S  S  S  W  A  N  K  T  H  D  D  F  L  K  C  L  S  H  K  I  M  N  S  N  S  K  S  Q  V  I  Y  T  P  K  N  S  S  Y  S  T  L  Y  D  S  F  S  S  N  L  R  I  T  S  D  F  K  P  S  I  I  F  T  P  N  D  E  S  Q  I  Q  E  A  I  H  C  S  K  K  H  G  L  Q  I  R  I  R  G  G  G  H  D  Y  E  G  L  S  Y  I  S  E  T  P  F  V  I  I  D  L  R  N  L  R  A  I  S  I  D  T  E  D  K  T  A  W  I  Q  A  G  A  R  L  G  E  V  Y  Y  R  I  A  E  K  S  K  K  L  A  F  V  A  G  V  C  P  T  V  G  V  G  G  H  F  S  G  G  G  Y  G  M  M  S  R  K  F  G  T  A  A  D  N  I  I  D  A  K  L  I  D  A  N  G  R  I  H  D  R  E  S  M  G  E  D  H  F  W  A  I  R  G  G  G  G  T  S  F  G  L  I  I  S  W  K  V  K  L  L  D  I  P </second_frame>
            <third_frame>   *  Q  S  F  S  F  S  Q  F  A  *  F  H  H  H  G  L  T  K  L  M  M  T  F  L  N  A  F  L  T  K  L  *  T  Q  T  Q  N  H  K  L  S  T  L  L  K  T  H  H  I  P  P  F  M  T  L  F  Q  V  I  *  G  *  L  P  I  S  N  H  Q  L  F  S  L  L  M  M  N  L  K  S  R  K  L  Y  I  A  P  R  N  M  A  C  K  L  E  F  E  A  V  D  M  T  M  R  D  F  H  T  F  L  K  P  R  L  S  *  L  I  L  E  T  *  E  Q  Y  P  L  I  R  K  T  R  L  L  G  F  K  L  A  R  D  *  G  K  F  T  I  E  S  R  K  K  V  K  N  *  P  L  L  L  G  F  A  L  L  L  V  L  V  D  T  L  V  V  E  G  M  V  *  C  H  E  N  S  V  L  L  L  I  T  S  L  M  Q  S  *  L  M  L  M  D  V  S  M  I  E  N  Q  W  V  R  I  T  F  G  L  L  E  E  V  E  G  L  V  L  V  S  L  S  H  G  R  *  N  Y  L  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6996" stop="6277"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTIFFFLSICLISSSWANKTHDDFLKCLSHKIMNSNSKSQVIYTPKNSSYSTLYDSFSSNLRITSDFKPSIIFTPNDESQIQEAIHCSKKHGLQIRIRGGGHDYEGLSYISETPFVIIDLRNLRAISIDTEDKTAWIQAGARLGEVYYRIAEKSKKLAFVAGVCPTVGVGGHFSGGGYGMMSRKFGTAADNIIDAKLIDANGRIHDRESMGEDHFWAIRGGGGTSFGLIISWKVKLLDIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14554" PGL_stop="13909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14554" e_stop="13909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="14554" e_stop="13909" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14554" stop="13909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATAATCAAATGATGACTAGTTTCAACAAGTTAACAATCTTTTTCTTTCTCTCAATTTGCCTAATTTCATCATCATGGGCTAACAAAACTCATGATGACTTTCTTGAATGCCTTTCTCACAAAATTATGAACTCAACCTTAATATCACAAGTAATCCACACTCCTAAAAACTCATCATATTCAACCATTTATAACTCCTATTCAGATAACGTAAGGATAACCTCCGACTTCAAACCATCAATTATTTTCACTCCTACCAAAGAATCTCAAATCCAGGCAGCTATACATTGCTCCAAGATACATGACCTACAAATTAGGATTCGAAGCGGTGGACATGACTATGAGGGACTTTCATACACTTCGGACACCCCTTTTTTCATAATTGATCTTAGAAACCTAAGATCAATATCCGTTGATACCCAAAAAAAGACTGCTTGGATTCAAGCTGGCGCGACTCTAGGGGAAGTTTACTATAGAATCGCGGAAAAAAGTAAAAAATTGGCTGTAGTTGCTGGGGTTTGCCCAACTGTTGGTGTTGGTGGACACTTTAGTGGTGGAGGCTATGGCATGATGTCACGAAAATTCGGTACTGCTGCTGATAACATCATTGATGCAAAATTAATTGATGCTAATGGACGAATT</gDNA_template>
            <first_frame> N  K  *  S  N  D  D  *  F  Q  Q  V  N  N  L  F  L  S  L  N  L  P  N  F  I  I  M  G  *  Q  N  S  *  *  L  S  *  M  P  F  S  Q  N  Y  E  L  N  L  N  I  T  S  N  P  H  S  *  K  L  I  I  F  N  H  L  *  L  L  F  R  *  R  K  D  N  L  R  L  Q  T  I  N  Y  F  H  S  Y  Q  R  I  S  N  P  G  S  Y  T  L  L  Q  D  T  *  P  T  N  *  D  S  K  R  W  T  *  L  *  G  T  F  I  H  F  G  H  P  F  F  H  N  *  S  *  K  P  K  I  N  I  R  *  Y  P  K  K  D  C  L  D  S  S  W  R  D  S  R  G  S  L  L  *  N  R  G  K  K  *  K  I  G  C  S  C  W  G  L  P  N  C  W  C  W  W  T  L  *  W  W  R  L  W  H  D  V  T  K  I  R  Y  C  C  *  *  H  H  *  C  K  I  N  *  C  *  W  T  N  </first_frame>
            <second_frame>  T  N  N  Q  M  M  T  S  F  N  K  L  T  I  F  F  F  L  S  I  C  L  I  S  S  S  W  A  N  K  T  H  D  D  F  L  E  C  L  S  H  K  I  M  N  S  T  L  I  S  Q  V  I  H  T  P  K  N  S  S  Y  S  T  I  Y  N  S  Y  S  D  N  V  R  I  T  S  D  F  K  P  S  I  I  F  T  P  T  K  E  S  Q  I  Q  A  A  I  H  C  S  K  I  H  D  L  Q  I  R  I  R  S  G  G  H  D  Y  E  G  L  S  Y  T  S  D  T  P  F  F  I  I  D  L  R  N  L  R  S  I  S  V  D  T  Q  K  K  T  A  W  I  Q  A  G  A  T  L  G  E  V  Y  Y  R  I  A  E  K  S  K  K  L  A  V  V  A  G  V  C  P  T  V  G  V  G  G  H  F  S  G  G  G  Y  G  M  M  S  R  K  F  G  T  A  A  D  N  I  I  D  A  K  L  I  D  A  N  G  R  I </second_frame>
            <third_frame>   Q  I  I  K  *  *  L  V  S  T  S  *  Q  S  F  S  F  S  Q  F  A  *  F  H  H  H  G  L  T  K  L  M  M  T  F  L  N  A  F  L  T  K  L  *  T  Q  P  *  Y  H  K  *  S  T  L  L  K  T  H  H  I  Q  P  F  I  T  P  I  Q  I  T  *  G  *  P  P  T  S  N  H  Q  L  F  S  L  L  P  K  N  L  K  S  R  Q  L  Y  I  A  P  R  Y  M  T  Y  K  L  G  F  E  A  V  D  M  T  M  R  D  F  H  T  L  R  T  P  L  F  S  *  L  I  L  E  T  *  D  Q  Y  P  L  I  P  K  K  R  L  L  G  F  K  L  A  R  L  *  G  K  F  T  I  E  S  R  K  K  V  K  N  W  L  *  L  L  G  F  A  Q  L  L  V  L  V  D  T  L  V  V  E  A  M  A  *  C  H  E  N  S  V  L  L  L  I  T  S  L  M  Q  N  *  L  M  L  M  D  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14553" stop="13909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNQMMTSFNKLTIFFFLSICLISSSWANKTHDDFLECLSHKIMNSTLISQVIHTPKNSSYSTIYNSYSDNVRITSDFKPSIIFTPTKESQIQAAIHCSKIHDLQIRIRSGGHDYEGLSYTSDTPFFIIDLRNLRSISVDTQKKTAWIQAGATLGEVYYRIAEKSKKLAVVAGVCPTVGVGGHFSGGGYGMMSRKFGTAADNIIDAKLIDANGRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25735" PGL_stop="25283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25735" e_stop="25283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="25735" e_stop="25283" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25735" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25735" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25734" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCCTTTCCCTCATAGAGCTGGAAATATATTCACGATCGAGTATGGAGTGTATTGGAGTAGAATCGAAAATTCTCAAAGAAATATAGCTTGGATTCGAAAACTTTATGAATACATGGGTAAGTATGTGTCAAAATCTCCTAGAGCTGCATATTTGAACTATAGAGATCTTGATTTAGGAATGAACAATATTAATGGAAACACAAGCTATGAACAAGCAAGAGTTTGGGGAGTGAAATATTTCAACAACAACTTTGATAGATTAGTACAAGTCAAGACTAAGTTTGATCCAACTAATTTCTTTAGGAATCAACAAAGTATTCCTCCTCTATTATCTTTAGGTTATAATATATGGTAGTTAATTTATATATAATACTATAGTACTGAAAAATAAATGTACGTAGCAAGGATCGATTTGTTTCAAAGATTATGTACGATATATATTGTTTGATTT</gDNA_template>
            <first_frame> I  P  F  P  H  R  A  G  N  I  F  T  I  E  Y  G  V  Y  W  S  R  I  E  N  S  Q  R  N  I  A  W  I  R  K  L  Y  E  Y  M  G  K  Y  V  S  K  S  P  R  A  A  Y  L  N  Y  R  D  L  D  L  G  M  N  N  I  N  G  N  T  S  Y  E  Q  A  R  V  W  G  V  K  Y  F  N  N  N  F  D  R  L  V  Q  V  K  T  K  F  D  P  T  N  F  F  R  N  Q  Q  S  I  P  P  L  L  S  L  G  Y  N  I  W  *  L  I  Y  I  *  Y  Y  S  T  E  K  *  M  Y  V  A  R  I  D  L  F  Q  R  L  C  T  I  Y  I  V  *  F </first_frame>
            <second_frame>  F  L  S  L  I  E  L  E  I  Y  S  R  S  S  M  E  C  I  G  V  E  S  K  I  L  K  E  I  *  L  G  F  E  N  F  M  N  T  W  V  S  M  C  Q  N  L  L  E  L  H  I  *  T  I  E  I  L  I  *  E  *  T  I  L  M  E  T  Q  A  M  N  K  Q  E  F  G  E  *  N  I  S  T  T  T  L  I  D  *  Y  K  S  R  L  S  L  I  Q  L  I  S  L  G  I  N  K  V  F  L  L  Y  Y  L  *  V  I  I  Y  G  S  *  F  I  Y  N  T  I  V  L  K  N  K  C  T  *  Q  G  S  I  C  F  K  D  Y  V  R  Y  I  L  F  D   </second_frame>
            <third_frame>   S  F  P  S  *  S  W  K  Y  I  H  D  R  V  W  S  V  L  E  *  N  R  K  F  S  K  K  Y  S  L  D  S  K  T  L  *  I  H  G  *  V  C  V  K  I  S  *  S  C  I  F  E  L  *  R  S  *  F  R  N  E  Q  Y  *  W  K  H  K  L  *  T  S  K  S  L  G  S  E  I  F  Q  Q  Q  L  *  *  I  S  T  S  Q  D  *  V  *  S  N  *  F  L  *  E  S  T  K  Y  S  S  S  I  I  F  R  L  *  Y  M  V  V  N  L  Y  I  I  L  *  Y  *  K  I  N  V  R  S  K  D  R  F  V  S  K  I  M  Y  D  I  Y  C  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25735" stop="25379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPFPHRAGNIFTIEYGVYWSRIENSQRNIAWIRKLYEYMGKYVSKSPRAAYLNYRDLDLGMNNINGNTSYEQARVWGVKYFNNNFDRLVQVKTKFDPTNFFRNQQSIPPLLSLGYNIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37451" PGL_stop="36443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37451" e_stop="37391"/>
            <exon e_start="37303" e_stop="37159"/>
            <exon e_start="37069" e_stop="36635"/>
            <exon e_start="36452" e_stop="36443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.000" acc_prob="0.648" e_score="0.993"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37451" e_stop="37391" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="37390" i_stop="37304" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="37303" e_stop="37159" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37158" i_stop="37070" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="37069" e_stop="36635" e_length="435"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.648">
            <gDNA_intron_boundary i_start="36634" i_stop="36453" i_length="182"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="36452" e_stop="36443" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37451" stop="37391"/>
              <exon start="37303" stop="37159"/>
              <exon start="37069" stop="36635"/>
              <exon start="36452" stop="36443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAACCAAAAGCAAATTCGTATTTGCTCGCCCTGCTAAGGTCACTGAGACCTTGCTCAA : GTACATTCCAATCCATGAAATCCCTATTCAATATGGTGGACTCAAGAGGGAGAATGACTTTGAGTTTTCAGCCTCCGACTGTGAAGCTTCGGAGATTCTCCTTAAAGCTGGATCAATTGAAACTATTGAAATACCTGCAGTAGAT : GTGGAAAGTACATTTATCTGGGATGTTACGATTGTGGGCGGAGAAGTGAGCTATAAGGAGGAATTTGTGCCAGAGGATGAGACTTCTTACACTATAATCATTCAGAAGGACAAGAAGGTGAGCTCGACAATTCGCAACACGTTCAAGAACACTGAAGCAGGAAAGGTTGTGCTGACAATCAAGAACACTTCTAGCAAGAAGAAGAAGGCGTTTTATCGACACAAGATCACCAAATCAACAATTTGAGATGAGCAAGTTTCTATTTTGAGTGAAGATGGAGTTCTTTTTCTCTGTTTTTAAGAATATGTATAATGTAGTAACCTTTTTGTGGTGGTTCATATACTTGATTATTTTTGGTCCTACATTCATATTGTATATGCTGATTTATTCTTTTTTCTCCCTACAAGGAAGAATATGATCTCTCTATTTTTTACC : ATGGAAAAAA</gDNA_template>
            <first_frame> K  E  P  K  A  N  S  Y  L  L  A  L  L  R  S  L  R  P  C  S   : S  T  F  Q  S  M  K  S  L  F  N  M  V  D  S  R  G  R  M  T  L  S  F  Q  P  P  T  V  K  L  R  R  F  S  L  K  L  D  Q  L  K  L  L  K  Y  L  Q  *  M :   W  K  V  H  L  S  G  M  L  R  L  W  A  E  K  *  A  I  R  R  N  L  C  Q  R  M  R  L  L  T  L  *  S  F  R  R  T  R  R  *  A  R  Q  F  A  T  R  S  R  T  L  K  Q  E  R  L  C  *  Q  S  R  T  L  L  A  R  R  R  R  R  F  I  D  T  R  S  P  N  Q  Q  F  E  M  S  K  F  L  F  *  V  K  M  E  F  F  F  S  V  F  K  N  M  Y  N  V  V  T  F  L  W  W  F  I  Y  L  I  I  F  G  P  T  F  I  L  Y  M  L  I  Y  S  F  F  S  L  Q  G  R  I  *  S  L  Y  F  L  P :   W  K  K </first_frame>
            <second_frame>  K  N  Q  K  Q  I  R  I  C  S  P  C  *  G  H  *  D  L  A  Q  :  V  H  S  N  P  *  N  P  Y  S  I  W  W  T  Q  E  G  E  *  L  *  V  F  S  L  R  L  *  S  F  G  D  S  P  *  S  W  I  N  *  N  Y  *  N  T  C  S  R   : C  G  K  Y  I  Y  L  G  C  Y  D  C  G  R  R  S  E  L  *  G  G  I  C  A  R  G  *  D  F  L  H  Y  N  H  S  E  G  Q  E  G  E  L  D  N  S  Q  H  V  Q  E  H  *  S  R  K  G  C  A  D  N  Q  E  H  F  *  Q  E  E  E  G  V  L  S  T  Q  D  H  Q  I  N  N  L  R  *  A  S  F  Y  F  E  *  R  W  S  S  F  S  L  F  L  R  I  C  I  M  *  *  P  F  C  G  G  S  Y  T  *  L  F  L  V  L  H  S  Y  C  I  C  *  F  I  L  F  S  P  Y  K  E  E  Y  D  L  S  I  F  Y   : H  G  K   </second_frame>
            <third_frame>   R  T  K  S  K  F  V  F  A  R  P  A  K  V  T  E  T  L  L  K :   Y  I  P  I  H  E  I  P  I  Q  Y  G  G  L  K  R  E  N  D  F  E  F  S  A  S  D  C  E  A  S  E  I  L  L  K  A  G  S  I  E  T  I  E  I  P  A  V  D  :  V  E  S  T  F  I  W  D  V  T  I  V  G  G  E  V  S  Y  K  E  E  F  V  P  E  D  E  T  S  Y  T  I  I  I  Q  K  D  K  K  V  S  S  T  I  R  N  T  F  K  N  T  E  A  G  K  V  V  L  T  I  K  N  T  S  S  K  K  K  K  A  F  Y  R  H  K  I  T  K  S  T  I  *  D  E  Q  V  S  I  L  S  E  D  G  V  L  F  L  C  F  *  E  Y  V  *  C  S  N  L  F  V  V  V  H  I  L  D  Y  F  W  S  Y  I  H  I  V  Y  A  D  L  F  F  F  L  P  T  R  K  N  M  I  S  L  F  F  T  :  M  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37449" stop="37391"/>
                    <exon start="37303" stop="37159"/>
                    <exon start="37069" stop="36824"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTKSKFVFARPAKVTETLLKYIPIHEIPIQYGGLKRENDFEFSASDCEASEILLKAGSIETIEIPAVDVESTFIWDVTIVGGEVSYKEEFVPEDETSYTIIIQKDKKVSSTIRNTFKNTEAGKVVLTIKNTSSKKKKAFYRHKITKSTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="39102" PGL_stop="37989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39102" e_stop="39065"/>
            <exon e_start="38562" e_stop="37989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39102" e_stop="39065" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="39064" i_stop="38563" i_length="502"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="38562" e_stop="37989" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39102" stop="39065"/>
              <exon start="38562" stop="37989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39096" stop="39065"/>
              <exon start="38562" stop="38198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39096" stop="39065"/>
              <exon start="38562" stop="38224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACACAAGCAAAGCAACCTCATTCAACTCCAAAAG : CTGTTTAGGGGAGGAGGTGATTTCTAAGATCCAACACTTGTGTAATTGTGTTATTTATCTAAAAACATGACTGTTGAGGTGCAATGTGAGGCAACTCAAGTGGCTGAAGTAGTTGTTCCACAAGAGGAATTAGTGGCTGCTAACAAGGTTGTGGAGGAGGTTGAGGTGAATGAGAAGGTAAAAGAAGATGAAGAAGAGGAATCCAAGCCTAATACAATTGAGAAAAGCTCTTCTTATAGAGAAGAGAGCAACTTCCTCTCTGATCTCAAAGAGAATGAGAAGAAGGCATTGAATGAGTTGAAATCTATAGTTGAGGAGGCCATTGTTGGGAACACTCTATTCAAAAAAGAAGAGACCAACAAGTCTCTAGAGGAAGAGGGAAAGAATGAGGAAAATCCCGATGCGAATATAGAGGAGAAGGAGGGTGATTTGGATGTTGTTGAAGTGGATAGAGAGATTTCTATTTGGGGTGTACCCATTTTGCCTAGCAAAGGGGATGAGAAAACCAATGTGGTTCTATTGAAATTCTTGAGAGCAAGGGATTACAAAGTGAATGAATCTTTCGAAATGCTCA</gDNA_template>
            <first_frame> F  H  T  S  K  A  T  S  F  N  S  K  S :   C  L  G  E  E  V  I  S  K  I  Q  H  L  C  N  C  V  I  Y  L  K  T  *  L  L  R  C  N  V  R  Q  L  K  W  L  K  *  L  F  H  K  R  N  *  W  L  L  T  R  L  W  R  R  L  R  *  M  R  R  *  K  K  M  K  K  R  N  P  S  L  I  Q  L  R  K  A  L  L  I  E  K  R  A  T  S  S  L  I  S  K  R  M  R  R  R  H  *  M  S  *  N  L  *  L  R  R  P  L  L  G  T  L  Y  S  K  K  K  R  P  T  S  L  *  R  K  R  E  R  M  R  K  I  P  M  R  I  *  R  R  R  R  V  I  W  M  L  L  K  W  I  E  R  F  L  F  G  V  Y  P  F  C  L  A  K  G  M  R  K  P  M  W  F  Y  *  N  S  *  E  Q  G  I  T  K  *  M  N  L  S  K  C  S </first_frame>
            <second_frame>  F  T  Q  A  K  Q  P  H  S  T  P  K   : A  V  *  G  R  R  *  F  L  R  S  N  T  C  V  I  V  L  F  I  *  K  H  D  C  *  G  A  M  *  G  N  S  S  G  *  S  S  C  S  T  R  G  I  S  G  C  *  Q  G  C  G  G  G  *  G  E  *  E  G  K  R  R  *  R  R  G  I  Q  A  *  Y  N  *  E  K  L  F  L  *  R  R  E  Q  L  P  L  *  S  Q  R  E  *  E  E  G  I  E  *  V  E  I  Y  S  *  G  G  H  C  W  E  H  S  I  Q  K  R  R  D  Q  Q  V  S  R  G  R  G  K  E  *  G  K  S  R  C  E  Y  R  G  E  G  G  *  F  G  C  C  *  S  G  *  R  D  F  Y  L  G  C  T  H  F  A  *  Q  R  G  *  E  N  Q  C  G  S  I  E  I  L  E  S  K  G  L  Q  S  E  *  I  F  R  N  A   </second_frame>
            <third_frame>   S  H  K  Q  S  N  L  I  Q  L  Q  K  :  L  F  R  G  G  G  D  F  *  D  P  T  L  V  *  L  C  Y  L  S  K  N  M  T  V  E  V  Q  C  E  A  T  Q  V  A  E  V  V  V  P  Q  E  E  L  V  A  A  N  K  V  V  E  E  V  E  V  N  E  K  V  K  E  D  E  E  E  E  S  K  P  N  T  I  E  K  S  S  S  Y  R  E  E  S  N  F  L  S  D  L  K  E  N  E  K  K  A  L  N  E  L  K  S  I  V  E  E  A  I  V  G  N  T  L  F  K  K  E  E  T  N  K  S  L  E  E  E  G  K  N  E  E  N  P  D  A  N  I  E  E  K  E  G  D  L  D  V  V  E  V  D  R  E  I  S  I  W  G  V  P  I  L  P  S  K  G  D  E  K  T  N  V  V  L  L  K  F  L  R  A  R  D  Y  K  V  N  E  S  F  E  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38517" stop="37990"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCYLSKNMTVEVQCEATQVAEVVVPQEELVAANKVVEEVEVNEKVKEDEEEESKPNTIEKSSSYREESNFLSDLKENEKKALNELKSIVEEAIVGNTLFKKEETNKSLEEEGKNEENPDANIEEKEGDLDVVEVDREISIWGVPILPSKGDEKTNVVLLKFLRARDYKVNESFEML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47309" PGL_stop="41001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47309" e_stop="47241"/>
            <exon e_start="47126" e_stop="47046"/>
            <exon e_start="45069" e_stop="45004"/>
            <exon e_start="44924" e_stop="44808"/>
            <exon e_start="44694" e_stop="44643"/>
            <exon e_start="44541" e_stop="44456"/>
            <exon e_start="42708" e_stop="42648"/>
            <exon e_start="41436" e_stop="41331"/>
            <exon e_start="41220" e_stop="41173"/>
            <exon e_start="41042" e_stop="41001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.010" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.580" e_score="0.953"/>
          <exon-intron don_prob="0.963" acc_prob="0.000" e_score="0.958"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47309" e_stop="47241" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="47240" i_stop="47127" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47126" e_stop="47046" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47045" i_stop="45070" i_length="1976"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45069" e_stop="45004" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45003" i_stop="44925" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44924" e_stop="44808" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.010">
            <gDNA_intron_boundary i_start="44807" i_stop="44695" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44694" e_stop="44643" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44642" i_stop="44542" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44541" e_stop="44456" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44455" i_stop="42709" i_length="1747"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42708" e_stop="42648" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42647" i_stop="41437" i_length="1211"/>
          </intron>
          <exon e_serial="8" e_score="0.953">
            <gDNA_exon_boundary e_start="41436" e_stop="41331" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.580">
            <gDNA_intron_boundary i_start="41330" i_stop="41221" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="0.958">
            <gDNA_exon_boundary e_start="41220" e_stop="41173" e_length="48"/>
          </exon>
          <intron i_serial="9" don_prob="0.963" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41172" i_stop="41043" i_length="130"/>
          </intron>
          <exon e_serial="10" e_score="0.952">
            <gDNA_exon_boundary e_start="41042" e_stop="41001" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47309" stop="47241"/>
              <exon start="47126" stop="47046"/>
              <exon start="45069" stop="45004"/>
              <exon start="44924" stop="44808"/>
              <exon start="44694" stop="44643"/>
              <exon start="44541" stop="44456"/>
              <exon start="42708" stop="42648"/>
              <exon start="41436" stop="41331"/>
              <exon start="41220" stop="41173"/>
              <exon start="41042" stop="41001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47309" stop="47241"/>
              <exon start="47126" stop="47046"/>
              <exon start="45069" stop="45004"/>
              <exon start="44924" stop="44808"/>
              <exon start="44694" stop="44643"/>
              <exon start="44541" stop="44456"/>
              <exon start="42708" stop="42650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGACAAGGTTCATAAGTCTCACTAACTTGGAAAGCAAGTAAAACTCAAGAAACATGGAGATCATG : ATCATCATTGCCTTCACTTATAGACGGAATGGTATGCTCATCGGCTGCAAGTATAGGACTCTTGAGAAAAGGTTTTGGCAG : GAGAAGGGTGCTGATAAGGTACTATATGGACTGGATGATGTAAGAGAAGCAGATGAGATCATCATT : GTAGAAGGTGAAATAGATAAGCTTTCAGTGGAAGAAGCTGGATTTCCTAACTGTGTCAGTGTTCCTAATGGTGCACCACAGGGCATCGCATCCAAAGAACTGCTACCACTGGAAGAG : ACAGGATACCAGATTTTCATACCTGTGGAACTGCAATGAGTGCTTGGAGAAG : GCGTCCCGGATTGTGCTGGCAACTGATGGTGATTTACCAGGCCAAGCATTGGCTGAAGAGCTTGCCCGCCGTCTGGGGAAAGAAAG : GTGTTGGCAAGTATGTTGGCCGAAAAAGAATGAGTTAAGCAGTTATAAAGATGCAAATGAG : GTACTTGTTAATCTGGGAAGAGAAGCTCTGAAAGAAGCGATTGAATGTGCCGTGCCATATGAAATGCAGAATTTGAACTAATCCACAAAGTTTTTAGTCTTAAGAG : ATATCTTTCCAACATTACTTGACCCTCTCCTCGAGACTTTATGCATCT : GTGACAGGTTGGTTGATGAAATGTTTCATTGTTTACTTGGAA</gDNA_template>
            <first_frame> N  M  T  R  F  I  S  L  T  N  L  E  S  K  *  N  S  R  N  M  E  I  M  :  I  I  I  A  F  T  Y  R  R  N  G  M  L  I  G  C  K  Y  R  T  L  E  K  R  F  W  Q  :  E  K  G  A  D  K  V  L  Y  G  L  D  D  V  R  E  A  D  E  I  I  I  :  V  E  G  E  I  D  K  L  S  V  E  E  A  G  F  P  N  C  V  S  V  P  N  G  A  P  Q  G  I  A  S  K  E  L  L  P  L  E  E  :  T  G  Y  Q  I  F  I  P  V  E  L  Q  *  V  L  G  E   : G  V  P  D  C  A  G  N  *  W  *  F  T  R  P  S  I  G  *  R  A  C  P  P  S  G  E  R  K  :  V  L  A  S  M  L  A  E  K  E  *  V  K  Q  L  *  R  C  K  *   : G  T  C  *  S  G  K  R  S  S  E  R  S  D  *  M  C  R  A  I  *  N  A  E  F  E  L  I  H  K  V  F  S  L  K  R :   Y  L  S  N  I  T  *  P  S  P  R  D  F  M  H  L :   *  Q  V  G  *  *  N  V  S  L  F  T  W   </first_frame>
            <second_frame>  I  *  Q  G  S  *  V  S  L  T  W  K  A  S  K  T  Q  E  T  W  R  S  * :   S  S  L  P  S  L  I  D  G  M  V  C  S  S  A  A  S  I  G  L  L  R  K  G  F  G  R :   R  R  V  L  I  R  Y  Y  M  D  W  M  M  *  E  K  Q  M  R  S  S  L :   *  K  V  K  *  I  S  F  Q  W  K  K  L  D  F  L  T  V  S  V  F  L  M  V  H  H  R  A  S  H  P  K  N  C  Y  H  W  K  R :   Q  D  T  R  F  S  Y  L  W  N  C  N  E  C  L  E  K  :  A  S  R  I  V  L  A  T  D  G  D  L  P  G  Q  A  L  A  E  E  L  A  R  R  L  G  K  E  R :   C  W  Q  V  C  W  P  K  K  N  E  L  S  S  Y  K  D  A  N  E  :  V  L  V  N  L  G  R  E  A  L  K  E  A  I  E  C  A  V  P  Y  E  M  Q  N  L  N  *  S  T  K  F  L  V  L  R   : D  I  F  P  T  L  L  D  P  L  L  E  T  L  C  I   : C  D  R  L  V  D  E  M  F  H  C  L  L  G  </second_frame>
            <third_frame>   Y  D  K  V  H  K  S  H  *  L  G  K  Q  V  K  L  K  K  H  G  D  H   : D  H  H  C  L  H  L  *  T  E  W  Y  A  H  R  L  Q  V  *  D  S  *  E  K  V  L  A   : G  E  G  C  *  *  G  T  I  W  T  G  *  C  K  R  S  R  *  D  H  H   : C  R  R  *  N  R  *  A  F  S  G  R  S  W  I  S  *  L  C  Q  C  S  *  W  C  T  T  G  H  R  I  Q  R  T  A  T  T  G  R   : D  R  I  P  D  F  H  T  C  G  T  A  M  S  A  W  R  R :   R  P  G  L  C  W  Q  L  M  V  I  Y  Q  A  K  H  W  L  K  S  L  P  A  V  W  G  K  K   : G  V  G  K  Y  V  G  R  K  R  M  S  *  A  V  I  K  M  Q  M  R :   Y  L  L  I  W  E  E  K  L  *  K  K  R  L  N  V  P  C  H  M  K  C  R  I  *  T  N  P  Q  S  F  *  S  *  E  :  I  S  F  Q  H  Y  L  T  L  S  S  R  L  Y  A  S  :  V  T  G  W  L  M  K  C  F  I  V  Y  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44908" stop="44808"/>
                    <exon start="44694" stop="44643"/>
                    <exon start="44541" stop="44456"/>
                    <exon start="42708" stop="42648"/>
                    <exon start="41436" stop="41356"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFQWKKLDFLTVSVFLMVHHRASHPKNCYHWKRQDTRFSYLWNCNECLEKASRIVLATDGDLPGQALAEELARRLGKERCWQVCWPKKNELSSYKDANEVLVNLGREALKEAIECAVPYEMQNLN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47264" stop="47241"/>
                    <exon start="47126" stop="47046"/>
                    <exon start="45069" stop="45004"/>
                    <exon start="44924" stop="44808"/>
                    <exon start="44694" stop="44656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRNMEIMIIIAFTYRRNGMLIGCKYRTLEKRFWQEKGADKVLYGLDDVREADEIIIVEGEIDKLSVEEAGFPNCVSVPNGAPQGIASKELLPLEETGYQIFIPVELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51361" PGL_stop="52237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51361" e_stop="52237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="51361" e_stop="52237" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51361" stop="52032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51370" stop="51701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51517" stop="52237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCC</gDNA_template>
            <first_frame> K  I  K  T  I  F  V  V  H  *  *  H  K  L  K  F  D  T  F  I  S  W  *  K  C  K  Q  A  K  K  *  *  R  P  E  *  D  V  I  C  S  I  Q  S  D  D  T  T  C  *  V  S  T  T  R  T  S  H  N  V  F  S  L  Y  G  D  I  S  V  I  C  I  C  R  G  K  I  A  S  S  E  F  L  I  R  F  Y  F  S  V  P  V  V  A  S  P  S  M  L  F  F  F  F  F  P  S  P  C  L  D  L  L  G  A  S  S  S  L  S  L  S  S  F  L  K  L  F  S  V  C  G  *  C  T  P  S  S  G  P  T  T  E  P  A  V  S  *  P  L  P  W  S  G  P  E  L  N  L  S  F  L  S  L  K  G  A  R  *  S  F  L  T  R  G  F  *  E  G  G  G  G  G  G  V  N  D  G  C  I  P  I  G  R  P  P  L  G  G  P  G  A  P  G  P  I  P  P  M  K  G  G  L  A  G  P  I  I  I  P  N  P  P  A  A  G  G  R  L  *  N  I  I  S  P  G  N  R  G  P  N  G  P  K  G  R  P  P  I  P  *  G  S  G  I  G  K  P  S  G  V  I  D  P  *  E  N  P  S  L  I  M  P  G  G  K  P  R  I  P  G  K  G  L  A  P  R  K  G  T  R  G  G  </first_frame>
            <second_frame>  K  *  K  P  Y  L  L  Y  T  S  D  I  N  S  S  L  I  L  L  S  V  G  K  N  V  S  K  Q  R  S  S  E  G  R  N  E  M  S  Y  V  V  Y  N  L  M  T  L  L  A  R  S  P  L  Q  E  L  A  I  M  C  S  P  C  M  E  I  Y  Q  S  F  A  F  A  E  A  R  L  H  L  Q  S  F  S  *  D  F  T  F  L  C  Q  *  *  H  L  H  P  C  Y  S  S  F  S  F  H  H  H  V  W  T  F  *  G  L  H  P  R  S  R  F  H  H  F  *  S  C  F  Q  F  V  D  N  V  L  L  H  L  V  Q  Q  L  S  L  Q  S  L  D  P  Y  L  G  L  D  L  N  *  I  Y  R  S  F  H  *  K  E  L  A  D  P  F  *  P  E  D  F  E  R  A  V  V  G  V  V  *  M  M  D  A  F  P  L  V  D  H  L  W  V  G  Q  V  L  Q  D  P  F  H  P  *  K  G  A  L  L  D  P  S  S  S  Q  I  H  Q  Q  P  E  D  G  C  E  T  S  Y  H  Q  G  I  E  G  Q  M  V  Q  K  V  G  H  P  F  H  K  D  Q  A  *  E  N  H  Q  V  S  L  I  H  K  K  I  H  H  S  *  C  L  G  G  S  P  A  S  Q  G  K  A  W  L  H  E  K  E  L  E  E  A </second_frame>
            <third_frame>   N  K  N  H  I  C  C  T  L  V  T  *  T  Q  V  *  Y  F  Y  Q  L  V  K  M  *  A  S  K  E  V  V  K  A  G  M  R  C  H  M  *  Y  T  I  *  *  H  Y  L  L  G  L  H  Y  K  N  *  P  *  C  V  L  P  V  W  R  Y  I  S  H  L  H  L  Q  R  Q  D  C  I  F  R  V  S  H  K  I  L  L  F  C  A  S  S  S  I  S  I  H  A  I  L  L  F  L  S  I  T  M  S  G  P  S  R  G  F  I  L  A  L  A  F  I  I  S  K  A  V  F  S  L  W  I  M  Y  S  F  I  W  S  N  N  *  A  C  S  L  L  T  P  T  L  V  W  T  *  T  E  S  I  V  P  F  I  K  R  S  S  L  I  L  F  D  P  R  I  L  R  G  R  W  W  G  W  C  K  *  W  M  H  S  H  W  S  T  T  S  G  W  A  R  C  S  R  T  H  S  T  H  E  R  G  P  C  W  T  H  H  H  P  K  S  T  S  S  R  R  T  A  V  K  H  H  I  T  R  E  S  R  A  K  W  S  K  R  S  A  T  H  S  I  R  I  R  H  R  K  T  I  R  C  H  *  S  I  R  K  S  I  T  H  N  A  W  G  E  A  P  H  P  R  E  R  P  G  S  T  K  R  N  *  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51537" stop="51785"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVLPVWRYISHLHLQRQDCIFRVSHKILLFCASSSISIHAILLFLSITMSGPSRGFILALAFIISKAVFSLWIMYSFIWSNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51511" stop="51756"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSTTRTSHNVFSLYGDISVICICRGKIASSEFLIRFYFSVPVVASPSMLFFFFFPSPCLDLLGASSSLSLSSFLKLFSVCG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51368" stop="51613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPYLLYTSDINSSLILLSVGKNVSKQRSSEGRNEMSYVVYNLMTLLARSPLQELAIMCSPCMEIYQSFAFAEARLHLQSFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51918" stop="52145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WMHSHWSTTSGWARCSRTHSTHERGPCWTHHHPKSTSSRRTAVKHHITRESRAKWSKRSATHSIRIRHRKTIRCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65807" PGL_stop="64121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65807" e_stop="65313"/>
            <exon e_start="64505" e_stop="64121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65807" e_stop="65313" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65312" i_stop="64506" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="64505" e_stop="64121" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65807" stop="65313"/>
              <exon start="64505" stop="64177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65725" stop="65313"/>
              <exon start="64505" stop="64121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65724" stop="65313"/>
              <exon start="64505" stop="64163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT : GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</gDNA_template>
            <first_frame> K  Q  P  K  A  L  P  L  G  *  D  L  K  N  L  G  G  S  I  N  P  K  F  N  Q  K  S  R  L  I  D  Y  T  N  R  E  E  S  S  Q  N  G  *  R  R  R  R  T  K  L  *  F  *  R  W  L  R  Y  R  A  N  T  P  N  C  I  C  T  S  N  T  S  R  S  R  P  K  C  F  C  C  R  S  S  S  R  R  R  C  G  A  R  R  *  W  F  I  C  W  *  P  *  K  F  Q  A  D  C  L  *  A  L  A  A  V  L  V  Y  E  G  *  C  L  W  F  P  S  P  V  *  *  V  P  D  A  R  L  Q  V  L  *  T  L  W  R  V  P  *  T  R  L  C  L  *  A  H  Q  *  G  Y  *  R  M  *  H  :  V  *  I  R  I  L  S  E  W  S  *  L  P  I  *  T  C  K  D  A  W  T  S  T  S  S  G  R  S  S  S  E  N  S  E  F  D  I  P  W  L  L  E  Q  V  F  S  K  S  E  Y  K  L  F  N  S  G  R  Q  I  S  N  S  A  S  T  *  C  N  E  S  S  S  E  I  Y  S  N  G  T  T  H  W  P  T  A  P  A  A  S  T  T  S  S  T  A  S  T  S  G  A  P  N  S  N  T  N  P  S  R  H  P  A  K  S  G  C  N  T  P  A  S  R  T  I  *  V  C  </first_frame>
            <second_frame>  N  N  Q  K  P  C  P  W  V  R  T  *  K  T  L  V  A  P  *  T  P  N  S  T  R  N  Q  D  *  L  T  T  L  T  E  K  N  L  L  K  M  D  D  G  E  G  G  L  N  F  D  F  E  G  G  L  D  T  G  P  T  H  P  T  A  S  V  P  V  I  Q  A  G  P  A  P  N  A  S  V  A  V  V  P  P  G  G  G  V  G  L  G  G  D  G  S  F  V  G  N  R  R  S  F  R  Q  T  V  C  R  H  W  L  R  S  L  C  M  K  G  D  A  C  G  F  L  H  Q  Y  D  K  S  R  M  P  V  C  R  F  F  R  L  Y  G  E  C  R  E  Q  D  C  V  Y  K  H  T  N  E  D  I  K  E  C  N  M :   F  K  L  G  F  C  P  N  G  P  D  C  R  Y  R  H  A  K  M  P  G  P  P  P  P  V  V  E  V  L  Q  K  I  Q  N  L  T  S  H  G  Y  S  N  R  F  F  Q  N  R  N  T  N  Y  S  T  Q  A  D  K  S  Q  I  P  Q  V  P  N  V  M  N  Q  A  V  K  S  T  A  T  E  P  P  I  G  Q  P  H  Q  P  H  Q  Q  Q  V  Q  Q  P  Q  H  Q  G  P  P  T  Q  T  Q  T  L  P  G  T  Q  Q  N  Q  A  A  I  P  L  P  Q  G  P  S  R  C  V </second_frame>
            <third_frame>   T  T  K  S  P  A  P  G  L  G  L  E  K  P  W  W  L  H  K  P  Q  I  Q  P  E  I  K  I  D  *  L  H  *  Q  R  R  I  F  S  K  W  M  T  E  K  E  D  *  T  L  I  L  K  V  A  *  I  Q  G  Q  H  T  Q  L  H  L  Y  Q  *  Y  K  Q  V  P  P  Q  M  L  L  L  P  *  F  L  Q  A  A  V  W  G  *  E  V  M  V  H  L  L  V  T  V  E  V  S  G  R  L  F  V  G  I  G  C  G  P  C  V  *  R  V  M  L  V  V  S  F  T  S  M  I  S  P  G  C  P  F  A  G  S  L  D  S  M  E  S  A  V  N  K  I  V  F  I  S  T  P  M  R  I  L  K  N  V  T   : C  L  N  *  D  F  V  R  M  V  L  I  A  D  I  D  M  Q  R  C  L  D  L  H  L  Q  W  *  K  F  F  R  K  F  R  I  *  H  P  M  V  T  R  T  G  F  F  K  I  G  I  Q  I  I  Q  L  R  Q  T  N  L  K  F  R  K  Y  L  M  *  *  I  K  Q  *  N  L  Q  Q  R  N  H  P  L  A  N  R  T  S  R  I  N  N  K  F  N  S  L  N  I  R  G  P  Q  L  K  H  K  P  F  P  A  P  S  K  I  R  L  Q  Y  P  C  L  K  D  H  L  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65719" stop="65313"/>
                    <exon start="64505" stop="64121"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTLTEKNLLKMDDGEGGLNFDFEGGLDTGPTHPTASVPVIQAGPAPNASVAVVPPGGGVGLGGDGSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMFKLGFCPNGPDCRYRHAKMPGPPPPVVEVLQKIQNLTSHGYSNRFFQNRNTNYSTQADKSQIPQVPNVMNQAVKSTATEPPIGQPHQPHQQQVQQPQHQGPPTQTQTLPGTQQNQAAIPLPQGPSRCV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="72818" PGL_stop="67753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72818" e_stop="72476"/>
            <exon e_start="71842" e_stop="71670"/>
            <exon e_start="68978" e_stop="68833"/>
            <exon e_start="68097" e_stop="67753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72818" e_stop="72476" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72475" i_stop="71843" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71842" e_stop="71670" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68978" e_stop="68833" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.990">
            <gDNA_intron_boundary i_start="68832" i_stop="68098" i_length="735"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="68097" e_stop="67753" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72818" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68833"/>
              <exon start="68097" stop="67851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72812" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68833"/>
              <exon start="68097" stop="67753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72808" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72759" stop="72476"/>
              <exon start="71842" stop="71745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72741" stop="72476"/>
              <exon start="71842" stop="71705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72711" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72689" stop="72476"/>
              <exon start="71842" stop="71670"/>
              <exon start="68978" stop="68840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71739" stop="71670"/>
              <exon start="68978" stop="68833"/>
              <exon start="68097" stop="67762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68850" stop="68833"/>
              <exon start="68097" stop="67762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68848" stop="68833"/>
              <exon start="68097" stop="67761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG : GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA : GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG : AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGACTCGAGTG</gDNA_template>
            <first_frame> I  K  I  T  E  C  T  R  R  E  G  D  S  K  I  R  F  V  H  A  I  Y  Q  D  R  T  G  P  D  R  H  Y  H  E  K  G  I  P  A  T  S  R  C  *  F  N  G  E  S  R  S  *  G  K  A  S  *  E  N  G  G  S  F  Q  R  P  S  Q  H  F  K  F  S  N  P  R  *  S  C  *  D  G  S  S  S  F  L  S  R  L  Y  F  G  L  S  S  I  P  L  P  R  Y  R  L  Q  V  C  *  A  R  L  R  C  *   : G  E  *  S  S  R  G  I  K  V  Y  Y  N  V  A  H  N  D  G  S  R  Y  S  S  K  L  C  E  K  G  R  *  S  Y  K  E  L  V  K  S  *  A  W  A  G  Y  G  *  G  V  V  R  G  D  Y  S  L  R  :  G  E  F  L  E  R  S  S  I  K  S  I  Y  T  S  V  C  S  I  P  W  M  G  H  Q  E  S  C  V  C  R  N  V  C  P  P  H  P  A  T  A  D  D  Q  A  *  *  R  * :   R  L  R  K  N  A  D  A  K  L  C  R  L  V  *  Y  C  H  F  V  H  *  Q  T  L  H  V  K  R  F  G  Y  *  L  V  T  M  K  N  W  M  S  *  C  S  F  I  H  V  I  R  P  *  S  L  I  C  I  I  I  *  R  S  G  P  N  I  *  L  *  L  T  Y  L  N  *  Q  G  N  E  K  M  P  *  N  R  K  L  S  I  C  T  W  G  D  V  E  L  I  I  F  *  K  K  R  K  Y  T  T  S  A  *  L  E   </first_frame>
            <second_frame>  S  K  S  L  S  A  L  E  E  R  G  I  P  K  L  D  L  F  T  Q  Y  I  R  T  G  P  D  R  T  G  I  T  T  K  K  E  F  R  R  H  H  G  A  D  S  M  A  N  H  V  A  E  E  K  P  L  R  K  M  A  E  A  F  K  D  L  A  N  T  L  N  S  Q  T  L  D  E  A  A  K  M  E  V  A  P  F  S  H  A  C  T  L  V  S  P  L  F  R  C  L  G  I  A  F  K  F  A  E  L  D  Y  V  A  K  :  V  N  D  L  A  E  A  S  K  S  I  T  T  L  H  T  M  M  D  Q  D  I  Q  A  N  C  V  R  K  A  G  S  H  T  R  N  L  L  R  V  K  R  G  L  D  M  V  K  V  L  F  E  E  I  I  A  S  E :   G  N  S  L  K  D  P  A  S  K  A  Y  T  Q  V  F  A  P  Y  H  G  W  A  I  R  K  A  V  S  A  G  M  Y  A  L  P  T  R  Q  Q  L  M  I  K  L  N  E  D   : E  D  S  A  R  T  Q  M  Q  N  Y  V  A  S  C  D  T  V  I  L  Y  I  D  K  L  F  T  S  R  D  L  G  T  D  W  *  P  *  R  T  G  C  H  N  A  H  S  F  M  *  F  A  P  N  H  L  Y  V  *  S  F  D  A  V  V  Q  I  F  D  C  N  *  L  I  L  T  S  R  E  M  K  K  C  P  R  T  E  N  Y  L  S  A  L  G  A  T  L  S  S  L  F  F  K  K  K  E  N  I  P  L  Q  L  D  S  S  </second_frame>
            <third_frame>   Q  N  H  *  V  H  S  K  R  G  G  F  Q  N  *  I  C  S  R  N  I  S  G  P  D  R  T  G  P  A  L  P  R  K  R  N  S  G  D  I  T  V  L  I  Q  W  R  I  T  *  L  R  K  S  L  L  G  K  W  R  K  L  S  K  T  *  P  T  L  *  I  L  K  P  *  M  K  L  L  R  W  K  *  L  L  S  L  T  L  V  L  W  S  L  L  Y  S  A  A  S  V  S  P  S  S  L  L  S  S  I  T  L  L  R :   *  M  I  *  Q  R  H  Q  S  L  L  Q  R  C  T  Q  *  W  I  K  I  F  K  Q  T  V  *  E  R  Q  V  V  I  Q  G  T  C  *  E  L  S  V  G  W  I  W  L  R  C  C  S  R  R  L  *  P  Q   : R  G  I  P  *  K  I  Q  H  Q  K  H  I  H  K  C  L  L  H  T  M  D  G  P  S  G  K  L  C  L  Q  E  C  M  P  S  P  P  G  N  S  *  *  S  S  L  M  K  M  :  K  T  P  Q  E  R  R  C  K  I  M  S  P  R  V  I  L  S  F  C  T  L  T  N  S  S  R  Q  E  I  W  V  L  I  G  D  H  E  E  L  D  V  I  M  L  I  H  S  C  D  S  P  L  I  T  Y  M  Y  N  H  L  T  Q  W  S  K  Y  L  I  V  T  N  L  S  *  L  A  G  K  *  K  N  A  L  E  Q  K  T  I  Y  L  H  L  G  R  R  *  A  H  Y  F  L  K  K  K  K  I  Y  H  F  S  L  T  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72817" stop="72476"/>
                    <exon start="71842" stop="71670"/>
                    <exon start="68978" stop="68833"/>
                    <exon start="68097" stop="67991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSLSALEERGIPKLDLFTQYIRTGPDRTGITTKKEFRRHHGADSMANHVAEEKPLRKMAEAFKDLANTLNSQTLDEAAKMEVAPFSHACTLVSPLFRCLGIAFKFAELDYVAKVNDLAEASKSITTLHTMMDQDIQANCVRKAGSHTRNLLRVKRGLDMVKVLFEEIIASEGNSLKDPASKAYTQVFAPYHGWAIRKAVSAGMYALPTRQQLMIKLNEDEDSARTQMQNYVASCDTVILYIDKLFTSRDLGTDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71850" e_stop="71670"/>
            <exon e_start="68978" e_stop="68630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71850" e_stop="71670" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71669" i_stop="68979" i_length="2691"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="68978" e_stop="68630" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71850" stop="71670"/>
              <exon start="68978" stop="68630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA : GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</gDNA_template>
            <first_frame> D  H  R  *  M  I  *  Q  R  H  Q  S  L  L  Q  R  C  T  Q  *  W  I  K  I  F  K  Q  T  V  *  E  R  Q  V  V  I  Q  G  T  C  *  E  L  S  V  G  W  I  W  L  R  C  C  S  R  R  L  *  P  Q   : R  G  I  P  *  K  I  Q  H  Q  K  H  I  H  K  C  L  L  H  T  M  D  G  P  S  G  K  L  C  L  Q  E  C  M  P  S  P  P  G  N  S  *  *  S  S  L  M  K  M  V  S  M  Q  F  S  F  F  T  I  P  L  T  Q  L  K  T  H  L  V  T  F  L  V  *  C  I  V  L  I  H  Y  F  F  I  L  K  *  T  W  F  G  F  I  Q  S  V  E  *  F  G  K  I  L  N  D  T  I  C  F  G  L  K  M  N  Y  E   </first_frame>
            <second_frame>  T  T  G  E  *  S  S  R  G  I  K  V  Y  Y  N  V  A  H  N  D  G  S  R  Y  S  S  K  L  C  E  K  G  R  *  S  Y  K  E  L  V  K  S  *  A  W  A  G  Y  G  *  G  V  V  R  G  D  Y  S  L  R  :  G  E  F  L  E  R  S  S  I  K  S  I  Y  T  S  V  C  S  I  P  W  M  G  H  Q  E  S  C  V  C  R  N  V  C  P  P  H  P  A  T  A  D  D  Q  A  *  *  R  W  *  V  C  S  S  A  S  L  L  Y  L  *  L  N  *  K  L  T  *  *  H  F  *  S  N  A  S  F  *  Y  I  I  F  L  F  *  S  E  L  G  L  A  L  S  N  L  L  S  N  L  V  K  F  L  M  T  Q  F  V  L  G  *  K  *  I  M  N  </second_frame>
            <third_frame>   P  Q  V  N  D  L  A  E  A  S  K  S  I  T  T  L  H  T  M  M  D  Q  D  I  Q  A  N  C  V  R  K  A  G  S  H  T  R  N  L  L  R  V  K  R  G  L  D  M  V  K  V  L  F  E  E  I  I  A  S  E :   G  N  S  L  K  D  P  A  S  K  A  Y  T  Q  V  F  A  P  Y  H  G  W  A  I  R  K  A  V  S  A  G  M  Y  A  L  P  T  R  Q  Q  L  M  I  K  L  N  E  D  G  E  Y  A  V  Q  L  L  Y  Y  T  S  D  S  T  K  N  S  P  S  N  I  F  S  L  M  H  R  S  D  T  L  F  F  Y  S  E  V  N  L  V  W  L  Y  P  I  C  *  V  I  W  *  N  S  *  *  H  N  L  F  W  A  K  N  E  L  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71848" stop="71670"/>
                    <exon start="68978" stop="68690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQVNDLAEASKSITTLHTMMDQDIQANCVRKAGSHTRNLLRVKRGLDMVKVLFEEIIASEGNSLKDPASKAYTQVFAPYHGWAIRKAVSAGMYALPTRQQLMIKLNEDGEYAVQLLYYTSDSTKNSPSNIFSLMHRSDTLFFYSEVNLVWLYPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="97116" PGL_stop="98122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97116" e_stop="97228"/>
            <exon e_start="97305" e_stop="97473"/>
            <exon e_start="97703" e_stop="97787"/>
            <exon e_start="97877" e_stop="97950"/>
            <exon e_start="98023" e_stop="98122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.489" acc_prob="0.931" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.946" e_score="0.988"/>
          <exon-intron don_prob="0.966" acc_prob="0.942" e_score="0.988"/>
          <exon-intron don_prob="0.277" acc_prob="0.129" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="97116" e_stop="97228" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.489" acc_prob="0.931">
            <gDNA_intron_boundary i_start="97229" i_stop="97304" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="97305" e_stop="97473" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.946">
            <gDNA_intron_boundary i_start="97474" i_stop="97702" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="97703" e_stop="97787" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.942">
            <gDNA_intron_boundary i_start="97788" i_stop="97876" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97877" e_stop="97950" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.277" acc_prob="0.129">
            <gDNA_intron_boundary i_start="97951" i_stop="98022" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98023" e_stop="98122" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97228"/>
              <exon start="97305" stop="97473"/>
              <exon start="97703" stop="97787"/>
              <exon start="97877" stop="97950"/>
              <exon start="98023" stop="98122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG : ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAG : GGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG : GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG : AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATT</gDNA_template>
            <first_frame> Q  D  C  F  L  Y  E  *  P  E  L  Q  L  K  A  P  H  *  E  L  R  R  N  I  G  V  V  K  R  E  I  Q  F  T  A  G  S  G :   L  V  Q  V  E  Q  T  *  K  S  M  M  R  *  H  P  H  T  S  C  L  F  M  I  *  D  I  L  Y  L  Y  P  V  N  L  F  E  M  I  G  L  V  V  L  *  L  S  R  N  K  L  D  L  S  F  Q  :  G  H  R  L  A  I  H  L  N  F  K  D  L  W  L  K  E  N  V  *  A  L  L  L  L  I  V  E   : G  R  R  E  N  A  Y  T  N  G  L  E  *  I  M  M  V  A  K  T  K  *  A  V  M  :  S  F  W  I  *  L  L  R  M  S  V  I  V  *  S  L  F  I  L  P  S  A  K  I  H  *  K  E  A  V  G  A  Y  </first_frame>
            <second_frame>  K  I  A  F  S  T  N  S  R  N  C  S  *  R  H  H  I  K  N  *  E  E  I  L  G  W  *  R  G  K  F  N  L  P  L  V  P   : D  *  F  K  W  N  K  H  R  S  Q  *  *  D  D  I  L  I  Q  A  V  Y  S  *  Y  R  I  F  Y  I  C  I  L  *  T  C  S  K  *  L  G  S  W  S  Y  S  Y  L  G  T  S  W  T  Y  R  S  R :   A  T  D  L  P  F  T  *  I  S  R  I  F  G  *  R  R  T  C  E  L  C  C  F  L  *  W  R  :  G  E  G  R  M  H  T  R  M  V  *  S  E  S  *  W  W  Q  R  Q  N  K  L  *  * :   V  S  G  F  D  S  *  G  C  Q  *  L  Y  R  A  Y  L  Y  S  H  P  Q  R  Y  I  K  R  K  L  *  E  H  I </second_frame>
            <third_frame>   R  L  L  S  L  R  I  A  G  T  A  V  E  G  T  T  L  R  I  E  K  K  Y  W  G  G  E  E  G  N  S  I  Y  R  W  F  R  :  T  S  S  S  G  T  N  I  E  V  N  D  E  M  T  S  S  Y  K  L  S  I  H  D  I  G  Y  F  I  S  V  S  C  E  P  V  R  N  D  W  A  R  G  P  I  V  I  S  E  Q  V  G  P  I  V  P   : G  P  P  T  C  H  S  L  E  F  Q  G  S  L  V  E  G  E  R  V  S  F  V  A  S  Y  S  G  G :   E  K  G  E  C  I  H  E  W  F  R  V  N  H  D  G  G  K  D  K  I  S  C  D   : E  F  L  D  L  T  L  E  D  V  S  N  C  I  E  L  I  Y  T  P  I  R  K  D  T  L  K  G  S  C  R  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97118" stop="97228"/>
                    <exon start="97305" stop="97473"/>
                    <exon start="97703" stop="97787"/>
                    <exon start="97877" stop="97950"/>
                    <exon start="98023" stop="98120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLSLRIAGTAVEGTTLRIEKKYWGGEEGNSIYRWFRTSSSGTNIEVNDEMTSSYKLSIHDIGYFISVSCEPVRNDWARGPIVISEQVGPIVPGPPTCHSLEFQGSLVEGERVSFVASYSGGEKGECIHEWFRVNHDGGKDKISCDEFLDLTLEDVSNCIELIYTPIRKDTLKGSCRSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="117128" PGL_stop="116608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117128" e_stop="116608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="117128" e_stop="116608" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117128" stop="116608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</gDNA_template>
            <first_frame> L  L  C  E  W  C  D  H  K  R  K  P  Q  Q  A  N  Y  M  H  I  A  H  P  R  V  L  N  R  H  S  C  L  L  G  T  *  *  E  R  M  D  W  I  L  L  H  C  A  Y  L  G  F  S  N  C  R  D  L  Y  F  H  S  S  G  S  *  S  *  A  L  G  C  A  S  C  A  L  V  A  I  I  I  D  S  Y  Q  H  F  P  T  R  L  D  R  *  R  F  V  H  Q  I  C  W  L  D  R  F  S  F  G  V  L  L  L  F  R  A  A  C  F  L  *  H  S  K  G  I  *  K  E  Q  R  V  E  E  Q  H  *  R  R  K  G  Y  F  *  C  G  C  *  Q  R  C  S  Y  C  S  W  *  L  N  *  L  C  L  N  D  S  T  M  L  R  S  *   </first_frame>
            <second_frame>  Y  Y  V  S  G  V  T  T  N  A  N  R  N  K  L  I  I  C  I  L  L  I  L  G  S  S  I  A  T  A  A  Y  W  G  L  S  E  K  G  W  I  G  Y  C  F  T  V  P  I  W  V  S  A  T  A  G  I  C  I  F  I  P  Q  A  R  N  P  K  L  W  G  V  P  L  V  P  W  L  P  S  L  S  I  A  I  N  I  F  L  L  G  S  I  D  K  D  S  F  I  R  F  A  G  W  T  G  F  L  L  A  Y  Y  F  F  F  G  L  H  A  S  Y  D  T  A  K  E  F  E  K  S  K  G  W  K  N  N  I  E  E  G  K  G  T  S  N  V  V  V  S  K  D  V  P  I  A  P  G  N  *  I  S  C  V  *  M  I  A  Q  C  Y  V  P  S  </second_frame>
            <third_frame>   T  M  *  V  V  *  P  Q  T  Q  T  A  T  S  *  L  Y  A  Y  C  S  S  S  G  P  Q  S  P  Q  L  L  T  G  D  L  V  R  K  D  G  L  D  T  A  S  L  C  L  F  G  F  Q  Q  L  Q  G  F  V  F  S  F  L  R  L  V  I  L  S  F  G  V  C  L  L  C  L  G  C  H  H  Y  R  *  L  S  T  F  S  Y  *  A  R  *  I  K  I  R  S  S  D  L  L  A  G  Q  V  F  F  W  R  I  T  S  F  S  G  C  M  L  L  M  T  Q  Q  R  N  L  K  R  A  K  G  G  R  T  T  L  K  K  E  R  V  L  L  M  W  L  L  A  K  M  F  L  L  L  L  V  T  E  L  V  V  S  K  *  *  H  N  V  T  F  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117127" stop="116651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYVSGVTTNANRNKLIICILLILGSSIATAAYWGLSEKGWIGYCFTVPIWVSATAGICIFIPQARNPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFAGWTGFLLAYYFFFGLHASYDTAKEFEKSKGWKNNIEEGKGTSNVVVSKDVPIAPGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="117903" PGL_stop="117479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117903" e_stop="117479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="117903" e_stop="117479" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117903" stop="117522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117898" stop="117479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTA</gDNA_template>
            <first_frame> S  A  S  S  S  A  S  L  P  F  V  V  R  K  A  L  L  V  S  T  M  L  P  R  S  F  T  L  W  *  L  F  S  S  S  S  V  A  *  S  R  Q  I  P  R  T  T  P  P  L  R  H  L  E  F  V  A  F  S  K  L  L  R  C  C  S  L  L  M  L  V  L  M  L  F  R  L  W  L  R  K  L  R  I  Q  L  E  I  S  P  L  A  *  L  D  L  W  *  S  P  L  L  C  T  V  Y  W  L  *  H  S  V  L  C  S  L  I  R  A  L  I  L  M  L  R  F  L  W  R  S  K  Q  L  D  G  V  G  R  N  I  L   </first_frame>
            <second_frame>  L  L  H  H  L  H  H  C  H  S  *  Y  E  R  L  F  S  S  Q  L  C  C  L  D  H  S  H  C  G  D  C  F  H  H  H  L  W  P  N  Q  G  R  Y  Q  E  L  H  P  L  Y  A  I  W  S  S  W  H  F  Q  S  F  C  G  V  V  L  C  L  C  W  F  *  C  C  F  D  Y  G  *  G  N  *  G  S  S  S  R  Y  P  H  W  P  S  W  I  Y  G  D  H  H  Y  C  V  L  F  I  G  Y  N  T  L  S  Y  A  A  L  S  E  H  *  S  *  C  S  V  F  C  G  V  Q  S  S  W  M  E  L  G  A  I  Y  C  </second_frame>
            <third_frame>   C  F  I  I  C  I  I  A  I  R  S  T  K  G  S  S  R  L  N  Y  V  A  S  I  I  H  I  V  V  I  V  F  I  I  I  C  G  L  I  K  A  D  T  K  N  Y  T  P  F  T  P  F  G  V  R  G  I  F  K  A  S  A  V  L  F  F  A  Y  V  G  F  D  A  V  S  T  M  A  E  E  T  K  D  P  A  R  D  I  P  I  G  L  V  G  S  M  V  I  T  T  T  V  Y  C  L  L  A  I  T  L  C  L  M  Q  P  Y  Q  S  I  D  P  N  A  P  F  S  V  A  F  K  A  V  G  W  S  W  A  Q  Y  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117901" stop="117479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFIICIIAIRSTKGSSRLNYVASIIHIVVIVFIIICGLIKADTKNYTPFTPFGVRGIFKASAVLFFAYVGFDAVSTMAEETKDPARDIPIGLVGSMVITTTVYCLLAITLCLMQPYQSIDPNAPFSVAFKAVGWSWAQYIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="140501" PGL_stop="124329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130161" e_stop="130103"/>
            <exon e_start="129468" e_stop="129068"/>
            <exon e_start="128049" e_stop="127888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130161" e_stop="130103" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="130102" i_stop="129469" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129468" e_stop="129068" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.970">
            <gDNA_intron_boundary i_start="129067" i_stop="128050" i_length="1018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128049" e_stop="127888" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130161" stop="130103"/>
              <exon start="129468" stop="129068"/>
              <exon start="128049" stop="127888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130161" stop="130103"/>
              <exon start="129468" stop="129068"/>
              <exon start="128049" stop="127900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129382" stop="129068"/>
              <exon start="128049" stop="127914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG : GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG : TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</gDNA_template>
            <first_frame> L  V  S  V  L  L  F  G  A  V  A  T  R  D  K  L  L  T  D  R :   L  L  S  A  T  V  A  W  P  F  P  A  I  V  Y  V  G  I  I  L  S  T  L  G  A  A  L  Q  S  L  T  G  A  P  R  L  L  A  A  I  A  N  D  E  I  L  P  V  L  N  Y  F  K  V  A  D  G  H  E  P  H  V  A  T  L  F  T  A  I  I  C  I  G  C  V  V  I  G  N  L  D  L  V  S  P  T  T  T  M  F  Y  L  V  C  Y  A  G  V  N  L  S  C  F  L  L  D  L  L  D  A  P  S  W  R  P  R  W  K  F  H  H  W  S  L  S  L  V  G  A  L  L  C  I   : V  T  M  F  L  I  S  W  A  F  T  I  V  S  L  A  L  A  S  L  I  Y  Y  Y  V  S  I  K  G  K  A  G  D  W  G  D  G  F  K  S  A  Y  F  Q  L  A  L  R  S  L  R  S  L  G  </first_frame>
            <second_frame>  W  F  L  C  Y  Y  S  E  L  L  Q  L  E  I  S  F  *  L  I   : G  Y  Y  L  L  Q  L  P  G  H  F  R  L  L  F  M  L  V  *  S  S  Q  P  W  G  Q  P  F  K  A  L  L  V  L  H  V  S  L  Q  R  L  Q  M  M  K  F  Y  L  F  L  T  I  L  K  W  Q  M  D  M  S  L  M  W  L  L  S  S  L  P  S  S  A  L  V  V  L  *  S  G  I  *  I  L  S  H  L  L  Q  Q  C  F  T  S  Y  A  M  L  A  *  T  Y  P  A  S  F  W  I  C  *  M  L  P  A  G  D  L  G  G  N  F  T  T  G  A  S  L  L  L  E  H  Y  F  V  *  :  *  P  C  F  *  F  P  G  H  S  P  L  Y  H  L  P  *  Q  A  S  Y  I  I  T  L  V  *  R  G  K  Q  E  T  G  V  T  V  L  R  V  R  I  F  S  L  L  F  A  V  C  D  L  W  E </second_frame>
            <third_frame>   G  F  C  A  T  I  R  S  C  C  N  *  R  *  A  F  D  *  *  :  V  I  I  C  Y  S  C  L  A  I  S  G  Y  C  L  C  W  Y  N  P  L  N  L  G  G  S  P  S  K  P  Y  W  C  S  T  S  P  C  S  D  C  K  *  *  N  S  T  C  S  *  L  F  *  S  G  R  W  T  *  A  S  C  G  Y  S  L  H  C  H  H  L  H  W  L  C  C  N  R  E  S  R  S  C  L  T  Y  Y  N  N  V  L  P  R  M  L  C  W  R  E  L  I  L  L  P  S  G  S  V  R  C  S  Q  L  A  T  S  V  E  I  S  P  L  E  P  L  S  C  W  S  I  T  L  Y  S :   D  H  V  F  D  F  L  G  I  H  H  C  I  T  C  P  S  K  P  H  I  L  L  R  *  Y  K  G  E  S  R  R  L  G  *  R  F  *  E  C  V  F  S  A  C  S  S  Q  F  A  I  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130161" stop="130103"/>
                    <exon start="129468" stop="129068"/>
                    <exon start="128049" stop="127889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSVLLFGAVATRDKLLTDRLLSATVAWPFPAIVYVGIILSTLGAALQSLTGAPRLLAAIANDEILPVLNYFKVADGHEPHVATLFTAIICIGCVVIGNLDLVSPTTTMFYLVCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVTMFLISWAFTIVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRSLRSLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="124788" e_stop="124329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="124788" e_stop="124329" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124788" stop="124329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124765" stop="124329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124763" stop="124329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</gDNA_template>
            <first_frame> K  K  *  K  S  K  H  R  E  T  G  L  R  *  W  L  M  E  S  L  C  L  L  K  N  N  K  *  R  N  S  F  T  P  L  *  S  *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F  L  F  S  F  T  A  L  H  N  Q  E  G  F  T  I  V  *  F  F  I  L  R  G  T  L  D  Q  N  F  A  </first_frame>
            <second_frame>  R  N  E  R  A  S  T  E  R  P  D  S  V  D  G  *  W  K  A  C  V  C  *  R  T  T  S  R  E  I  P  L  H  H  S  K  A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F  S  F  F  L  L  L  P  F  T  T  K  R  G  L  Q  L  Y  N  S  L  Y  *  G  A  H  W  T  K  I  L  L </second_frame>
            <third_frame>   E  M  K  E  Q  A  Q  R  D  R  T  P  L  M  A  D  G  K  P  V  F  V  E  E  Q  Q  V  E  K  F  L  Y  T  T  L  K  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  P  F  F  F  Y  C  P  S  Q  P  R  G  V  Y  N  C  I  I  L  Y  I  K  G  H  T  G  P  K  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124786" stop="124496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMKEQAQRDRTPLMADGKPVFVEEQQVEKFLYTTLKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="125431" e_stop="124823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125431" e_stop="124823" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125431" stop="124989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125286" stop="124823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</gDNA_template>
            <first_frame> I  F  V  S  I  I  D  G  D  Y  H  E  R  A  E  D  A  K  D  A  C  K  E  L  S  T  Y  I  D  Y  K  Q  C  E  G  V  A  E  I  V  V  A  P  S  M  S  E  G  F  R  G  I  V  Q  T  M  G  L  G  N  L  K  P  N  I  I  V  M  R  Y  P  E  I  W  R  R  E  N  L  T  D  I  P  A  T  F  V  G  I  I  N  D  C  I  V  A  N  K  A  V  V  I  V  K  G  L  D  E  W  P  N  E  Y  Q  R  Q  Y  G  T  I  D  L  Y  W  I  V  R  D  G  G  L  M  L  L  L  S  Q  L  L  L  T  K  D  S  F  E  G  C  K  I  Q  V  F  C  I  A  E  E  D  S  D  A  E  G  L  K  A  D  V  K  K  F  L  Y  D  L  R  M  Q  A  E  V  I  V  I  S  M  K  S  W  E  A  E  G  E  Q  Q  E  S  V  E  A  F </first_frame>
            <second_frame>  S  L  S  L  L  S  M  E  T  T  M  N  V  L  R  M  L  R  T  L  A  R  N  *  V  P  I  L  T  T  S  N  V  K  V  *  L  R  L  L  L  P  Q  A  C  L  K  A  F  E  A  L  F  R  L  W  V  S  E  I  S  S  Q  I  *  S  L  C  G  T  L  R  F  G  D  V  K  I  *  L  I  F  L  L  P  L  L  E  *  L  M  T  A  L  L  R  T  R  L  L  S  L  S  R  V  S  T  N  G  L  M  S  T  K  D  S  M  V  P  S  I  Y  T  G  *  *  E  M  V  V  S  C  F  Y  S  L  S  S  S  L  Q  K  I  A  L  K  A  V  R  Y  R  C  S  A  L  Q  R  K  I  L  M  Q  R  D  *  R  L  M  *  R  S  F  F  M  T  S  G  C  K  L  K  L  L  S  F  P  *  S  H  G  K  P  K  G  S  S  K  N  L  S  K  H   </second_frame>
            <third_frame>   L  C  L  Y  Y  R  W  R  L  P  *  T  C  *  G  C  *  G  R  L  Q  G  T  K  Y  L  Y  *  L  Q  A  M  *  R  C  S  *  D  C  C  C  P  K  H  V  *  R  L  S  R  H  C  S  D  Y  G  S  R  K  S  Q  A  K  Y  N  R  Y  A  V  P  *  D  L  A  T  *  K  F  D  *  Y  S  C  Y  L  C  W  N  N  *  *  L  H  C  C  E  Q  G  C  C  H  C  Q  G  S  R  R  M  A  *  *  V  P  K  T  V  W  Y  H  R  F  I  L  D  S  E  R  W  W  S  H  A  S  T  L  S  A  P  P  Y  K  R  *  L  *  R  L  *  D  T  G  V  L  H  C  R  G  R  F  *  C  R  G  I  E  G  *  C  K  E  V  S  L  *  P  P  D  A  S  *  S  Y  C  H  F  H  E  V  M  G  S  R  R  G  A  A  R  I  C  R  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125431" stop="124823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVSIIDGDYHERAEDAKDACKELSTYIDYKQCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFEGCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVISMKSWEAEGEQQESVEAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="140501" e_stop="140250"/>
            <exon e_start="138294" e_stop="138148"/>
            <exon e_start="136112" e_stop="136034"/>
            <exon e_start="124678" e_stop="124420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="140501" e_stop="140250" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="140249" i_stop="138295" i_length="1955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138294" e_stop="138148" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138147" i_stop="136113" i_length="2035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136112" e_stop="136034" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136033" i_stop="124679" i_length="11355"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="124678" e_stop="124420" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140501" stop="140250"/>
              <exon start="138294" stop="138148"/>
              <exon start="136112" stop="136034"/>
              <exon start="124678" stop="124420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA : GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG : TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG : CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</gDNA_template>
            <first_frame> *  I  A  A  *  K  P  L  F  S  R  L  T  L  S  G  L  G  S  S  D  L  T  A  L  N  S  G  G  N  G  R  W  R  R  D  *  D  C  G  G  K  *  V  P  F  S  Y  W  T  K  I  Q  S  S  G  G  A  *  Q  *  *  C  S  Y  *  D  V  F  C  S  S  R  I  F  L  F  S  P  Q  P  R  S  Q  :  E  R  Q  S  R  C  P  S  K  Y  G  I  *  R  K  R  R  V  I  I  Q  S  *  *  Q  W  S  S  K  R  I  Q  T  G  I  I  W  L  *  F  S  S  K  Y  S  R  S  Q  E  :  Y  D  R  G  S  N  S  R  T  V  *  S  K  R  W  *  G  Y  N  S  H  A  *  A  T  *   : A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F   </first_frame>
            <second_frame>  E  S  Q  L  K  N  P  F  S  R  G  *  H  F  P  V  W  V  V  Q  T  *  L  L  *  I  R  E  A  M  E  G  G  E  E  I  E  I  A  E  E  N  E  F  P  S  V  I  G  R  K  Y  S  P  V  V  A  H  D  N  D  S  A  V  I  E  M  S  S  V  R  P  G  S  S  S  S  L  P  N  H  D  L  K :   N  V  K  V  G  V  H  P  N  M  A  S  E  E  R  D  E  S  L  S  N  H  S  S  N  G  P  Q  R  E  S  K  L  E  L  F  G  F  D  S  L  V  N  I  L  G  L  K  S :   M  T  G  D  Q  I  P  A  P  S  S  P  R  D  G  E  D  I  T  L  T  L  E  Q  P  K  :  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  </second_frame>
            <third_frame>   N  R  S  L  K  T  P  F  L  A  V  N  T  F  R  F  G  *  F  R  L  D  C  F  E  F  G  R  Q  W  K  V  E  K  R  L  R  L  R  R  K  M  S  S  L  Q  L  L  D  E  N  T  V  Q  W  W  R  M  T  M  I  V  Q  L  L  R  C  L  L  F  V  P  D  L  P  L  L  S  P  T  T  I  S   : R  T  S  K  *  V  S  I  Q  I  W  H  L  K  K  E  T  S  H  Y  P  I  I  V  A  M  V  L  K  E  N  P  N  W  N  Y  L  A  L  I  L  *  *  I  F  *  V  S  R   : V  *  Q  G  I  K  F  P  H  R  L  V  Q  E  M  V  R  I  *  L  S  R  L  S  N  L  S :   *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0026M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140425" stop="140250"/>
                    <exon start="138294" stop="138148"/>
                    <exon start="136112" stop="136034"/>
                    <exon start="124678" stop="124496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREAMEGGEEIEIAEENEFPSVIGRKYSPVVAHDNDSAVIEMSSVRPGSSSSLPNHDLKNVKVGVHPNMASEERDESLSNHSSNGPQRESKLELFGFDSLVNILGLKSMTGDQIPAPSSPRDGEDITLTLEQPKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 329704 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 7326 bytes was the average size of a spliced alignment
$ 23368 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1557 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 98 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:08:49
-->
