<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:01:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565495" ref_strand="-" ref_description="SGN-U565495 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147841305|emb|CAN77886.1| (e_value=2e-28) hypothetical; (*ATH) AT1G75850.1 (e_value=9e-27)  Symbol: None | similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:At3g51310.1); similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein... ; ">
      <seq>aagcggggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttacttttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccatttaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="288" stop="1700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="588" g_stop="685" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="686" i_stop="776" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="777" g_stop="1400" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="723" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U565495" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="588" e_stop="685"/>
          <exon e_start="777" e_stop="1400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGC-GGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</genome_strand>
        <mrna_strand>AAGCGGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565334" ref_strand="+" ref_description="SGN-U565334 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147768428|emb|CAN73628.1| (e_value=4e-78) hypothetical; (*ATH) AT5G53300.2 (e_value=2e-77) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=2e-76) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>gcattatcttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaacaagagaattgttctcaacttgatgatgcatataatcctttccttcaagtcatatgtacatgattgagtttggaagtaggattctctctcgagaattccttcttatagttgttaaactacactgtttcttctttctgctttaaataatttcttgttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="3117" stop="1309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2818" g_stop="2702" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2701" i_stop="2617" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2616" g_stop="2489" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2488" i_stop="2420" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2419" g_stop="2315" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2314" i_stop="2071" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2070" g_stop="1609" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="812" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U565334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2818" e_stop="2702"/>
          <exon e_start="2616" e_stop="2489"/>
          <exon e_start="2419" e_stop="2315"/>
          <exon e_start="2070" e_stop="1609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</genome_strand>
        <mrna_strand>GCATTATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597108" ref_strand="+" ref_description="SGN-U597108 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|52851174|emb|CAH58635.1| (e_value=3e-53) Ubiquitin-conjugating enzyme [Plantago major]; (*ATH) AT4G27960.2 (e_value=9e-53) | Symbol: None | ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9), E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883 | chr4:13915839-13917426 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-51) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgaggattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaacaagagaattgttctcaacttgatgatgcatataatcctttccttcaagtcatatgtacatgattgagtttggaagtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="3102" stop="1388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2802" g_stop="2702" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2701" i_stop="2617" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2616" g_stop="2489" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="229" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2488" i_stop="2420" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2419" g_stop="2315" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="334" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2314" i_stop="2040" i_length="275">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2039" g_stop="1688" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="686" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U597108" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2802" e_stop="2702"/>
          <exon e_start="2616" e_stop="2489"/>
          <exon e_start="2419" e_stop="2315"/>
          <exon e_start="2039" e_stop="1688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</genome_strand>
        <mrna_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG...................................................................................................................................................................................................................................................................................ATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGGATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597107" ref_strand="+" ref_description="SGN-U597107 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147768428|emb|CAN73628.1| (e_value=2e-74) hypothetical; (*ATH) AT5G53300.2 (e_value=2e-73) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-72) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ctcattattaatggcatccaggagaattcaccttgagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggcgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccacatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggacctcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctaccagcaaaatataatatgtccacgacaacttttgctctatgaaaatgacaattcattgacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="3081" stop="1537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2781" g_stop="2702" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2701" i_stop="2617" i_length="85">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2616" g_stop="2489" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="208" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2488" i_stop="2420" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2419" g_stop="2315" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="313" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2314" i_stop="2071" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2070" g_stop="1837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="548" r_length="235" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U597107" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2781" e_stop="2702"/>
          <exon e_start="2616" e_stop="2489"/>
          <exon e_start="2419" e_stop="2315"/>
          <exon e_start="2070" e_stop="1837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGA-CTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGT</genome_strand>
        <mrna_strand>CTCATTATTAATGGCATCCAGGAGAATTCACCTTGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGCGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCACATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACCTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACCAGCAAAATATAATATGTCCACGACAACTTTTGCTCTATGAAAATGACAATTCATTGACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565336" ref_strand="+" ref_description="SGN-U565336 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|52851174|emb|CAH58635.1| (e_value=2e-43) Ubiquitin-conjugating enzyme [Plantago major]; (*ATH) AT5G53300.2 (e_value=1e-42) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-41) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>ccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtacacaccaatattacaactagtaattttcccaaatttaaagtagaagatagttttgaagatttgttatactaatatttttcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtatgttttcaattgatcactctccacaaagggactgctgatattaagttttcatatatatattgacaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccnaggtgctactgctttctagctcttccttttcctcaatgatttactatttcataaatcaaaagggatacacattagttagtgtttggttgctggctaacataaaaataaaatccaagtcgcataaaggataactgtaattaaatgttcatatataaacggaactagttacctgaaaataanaccagtaacttgcaaaaacaatatagtataaacttctacaatttgctgttggttttgnggangnnnnttttgctgtccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="3102" stop="1774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2802" g_stop="2054" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U565336" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2802" e_stop="2054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATG</genome_strand>
        <mrna_strand>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCNAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAANACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGNGGANGNNNNTTTTGCTGTCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581579" ref_strand="+" ref_description="SGN-U581579 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|14278856|gb|AAK31299.1| (e_value=8e-98) Rac-like GTPase 1 [Nicotiana tabacum]; (*ATH) AT3G51300.1 (e_value=5e-98) | Symbol: ROP1AT | Pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins, interacts with RIC3 and RIC4 to control tip growth in pollen tubes. | chr3:19053866-19055330 FORWARD | Aliases: F24M12.340, ARAC11, ROP1, ROP1AT; (*SWP) sp|Q39435|RAC1_BETVU (e_value=6e-98) Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1; ">
      <seq>gcattatttcccggctaaaacaaagggttacttataatactgactcagaatggaaaaaaatacagagatgaacacccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgtagaccatcctggtgctgtgccaattaccactgctcagggtgaagagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttctgtgtaatggctgtgatctctaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttctgatttgctttaaatgtattttaatgacctgatgatccagttagaaaaaaaaaaaaaggaaattttcccggcaatgttgacaacatatttctctgaacatattaaacgtttctttttagatattgcattcaagatatattactattttctttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="8205" stop="4167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7905" g_stop="7305" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7304" i_stop="6542" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6541" g_stop="6454" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="689" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6453" i_stop="6335" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6334" g_stop="6225" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="799" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6224" i_stop="6144" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6143" g_stop="6080" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="863" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6079" i_stop="5297" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5296" g_stop="5232" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="928" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5231" i_stop="5129" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5128" g_stop="5063" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="929" r_stop="994" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5062" i_stop="4962" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4961" g_stop="4467" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1490" r_length="496" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U581579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1489</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7905" e_stop="7305"/>
          <exon e_start="6541" e_stop="6454"/>
          <exon e_start="6334" e_stop="6225"/>
          <exon e_start="6143" e_stop="6080"/>
          <exon e_start="5296" e_stop="5232"/>
          <exon e_start="5128" e_stop="5063"/>
          <exon e_start="4961" e_stop="4467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAA-ATATATTACTATTTTCTTTCAAGT</genome_strand>
        <mrna_strand>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTAAATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAGATATATTACTATTTTCTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568781" ref_strand="+" ref_description="SGN-U568781 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|18654278|gb|AAL77575.1|L46847_1 (e_value=0) dehydroquinate; (*ATH) AT5G66120.2 (e_value=0) | Symbol: None | 3-dehydroquinate synthase, putative, similar to aroB (Neisseria gonorrhoeae)(GI:2661441); contains 3-dehydroquinate synthase domain PF01761 | chr5:26448602-26451004 REVERSE | Aliases: None; (*SWP) sp|Q31DP9|AROB_THICR (e_value=9e-125) 3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB; ">
      <seq>taaccacctaaccagccatccacaaatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaatatacttgctgatgcatcttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="14859" stop="9168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14559" g_stop="14167" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14166" i_stop="12176" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12175" g_stop="12025" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="544" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12024" i_stop="11936" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11935" g_stop="11768" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="712" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11629" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11628" g_stop="11402" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="939" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11401" i_stop="10948" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10947" g_stop="10824" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1063" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10823" i_stop="10411" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10410" g_stop="10348" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1064" r_stop="1126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10347" i_stop="10188" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10187" g_stop="10044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1270" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10043" i_stop="9962" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9961" g_stop="9468" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1764" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U568781" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14559" e_stop="14167"/>
          <exon e_start="12175" e_stop="12025"/>
          <exon e_start="11935" e_stop="11768"/>
          <exon e_start="11628" e_stop="11402"/>
          <exon e_start="10947" e_stop="10824"/>
          <exon e_start="10410" e_stop="10348"/>
          <exon e_start="10187" e_stop="10044"/>
          <exon e_start="9961" e_stop="9468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTAT</genome_strand>
        <mrna_strand>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602131" ref_strand="+" ref_description="SGN-U602131 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctctgtccaacacctattgcctctgtacaattccaaatttatgttcctcccctcattctctctctcacacatttccccattgaaatggtgattttgttagtgttcaaattggggatagctggtgtaaagattcaattttgatctatctgagtaagcaaaaagaagagtactacttttctttttttttaattctttttggtctgaaatttggtgtgccagtctttggagtacaacacacatggaacatggttgatagttcaagaaaggagaaaaggttaaagtgaggcttggtttgctcttttttgagttgtgtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="31179" stop="30258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30879" g_stop="30558" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U602131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30879" e_stop="30558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTCCAACACCTATTGCCTCTGTACAATTCCAAATTTATGTTCCTCCCCTCATTCTCTCTCTCACACATTTCCCCATTGAAATGGTGATTTTGTTAGTGTTCAAATTGGGGATAGCTGGTGTAAAGATTCAATTTTGATCTATCTGAGTAAGCAAAAAGAAGAGTACTACTTTTCTTTTTTTTTAATTCTTTTTGGTCTGAAATTTGGTGTGTCAGTCTTTGGAGTACAACACACATGGAACATGGTTGATAGTTCAAGAAAGGAGAAAAGGTTAAAGTGAGGCTTGGTTTGCTCTTTTTTGAGTTGTGTTTTTTTTTT</genome_strand>
        <mrna_strand>CTCTGTCCAACACCTATTGCCTCTGTACAATTCCAAATTTATGTTCCTCCCCTCATTCTCTCTCTCACACATTTCCCCATTGAAATGGTGATTTTGTTAGTGTTCAAATTGGGGATAGCTGGTGTAAAGATTCAATTTTGATCTATCTGAGTAAGCAAAAAGAAGAGTACTACTTTTCTTTTTTTTTAATTCTTTTTGGTCTGAAATTTGGTGTGCCAGTCTTTGGAGTACAACACACATGGAACATGGTTGATAGTTCAAGAAAGGAGAAAAGGTTAAAGTGAGGCTTGGTTTGCTCTTTTTTGAGTTGTGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584821" ref_strand="+" ref_description="SGN-U584821 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|5442410|gb|AAD43334.1|AF159254_1 (e_value=2e-95) ascorbate; (*ATH) AT4G35000.1 (e_value=1e-93)  Symbol: None | L-ascorbate peroxidase 3 (APX3), identical to ascorbate peroxidase 3 (Arabidopsis thaliana) GI:2444019, L-ascorbate peroxidase (Arabidopsis thaliana) gi:1523791:emb:CAA66926; similar to ascorbate peroxidase (Gossypium hirsutum) gi:101... ; (*SWP) sp|Q42564|APX3_ARATH (e_value=1e-92) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3; ">
      <seq>cattgtttatcttttcactcatataaaaaattctcttttcatctgttcttctacataatatatataatcctccagttctcataattccattattaaaagcttacgatatcagtgtcccgtattatcgaattatattatcaatggcagcaccaaaagtagatgcagagtatctgaaggaaatagaaaaggcacgaagagatctccgagctctcatctccagcaaaaactgtgctcctattatgcttcgtttagcgtggcatgatgcaggaacctatgatgctacaactaagactggaggacctgatggatcaatcaggaatgaggtagagtacaagcatggcgctaacagcggcctcaaaatcgcaattgatctttgcgaagaaattaaggccagacatcctaaaattacgtatgctgacctctatcagcttgctggagttgttgctgttgaggtaactggaggtccaaccattgattttgtccctggtagaaaggattcattaagttcaccagaagagggacgccttcctgatgctaaacaaggtccaccgcacctgagggatgttttttacagaatgggactctctgataaagatatagtagcattgtctggaggacacacactgggaagagcacacccagagagatctggctttgagggcccttggactaaagagcctttgaaatttgacaactcatactttgtggagctcctcaaggaggattcagaagatctcttaaagcttcccacggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="34269" stop="37633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34569" g_stop="34821" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34822" i_stop="34898" i_length="77">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34899" g_stop="35023" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="378" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35024" i_stop="35722" i_length="699">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35723" g_stop="35772" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="428" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35773" i_stop="35924" i_length="152">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35925" g_stop="35990" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="494" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35991" i_stop="36088" i_length="98">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36089" g_stop="36137" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36138" i_stop="36926" i_length="789">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36927" g_stop="37009" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="626" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37010" i_stop="37108" i_length="99">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37109" g_stop="37188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="706" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37189" i_stop="37284" i_length="96">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37285" g_stop="37333" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="755" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U584821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34569" e_stop="34821"/>
          <exon e_start="34899" e_stop="35023"/>
          <exon e_start="35723" e_stop="35772"/>
          <exon e_start="35925" e_stop="35990"/>
          <exon e_start="36089" e_stop="36137"/>
          <exon e_start="36927" e_stop="37009"/>
          <exon e_start="37109" e_stop="37188"/>
          <exon e_start="37285" e_stop="37333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTTATCTTTTCACTCATATAAAAAATTCTCTTTTCATCTGTTCTTCTACATAATATATATAATCCTCCAGTTCTCATAATTCCATTATTAAAAGCTTACGATATCAGTGTCCCGTATTATCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGCGTATGTATGCATAATCATCAAGTTTTGTGTTGAAATTGATTTTTGATCTGATATGATAAAGATGTTTTAATTTGCAGGTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCGGTAAGCTTATTAGCCTTTTGTTTTTCTGGAGTTTCGCGTATATAAGAGATCTAGTGATAATCTGACGGAAATGAATTTGTGTTCATTGATAATGTAATGATTTTAGTTCAAATATATGAGTGCTTTTGATTGATTTTTTTGGATGTTAACAGCGCTAATCACGTCATGTTTTATTATATCGCTTTGCATACTGTTTTTGAGTTCTTATTGGAAGATGAAAAGCTTATCATATCATATTTATGAAATTCTGTTAGTTTGTTCTGCATATAATTGGAGTCTTTCTTTGTGGTGAACAGTTTCTTATGCCTCTTTCTTTGTTCCTAGTATGGGAAGTGAAATTTACTTCGTACTGTTATCATTTTTCAGTTGAAAGCATTTAGGAGAGGTTAGAATTTGTTTAATTTTTACACAGCCACACATAAACTCCCTTACTAGAACTGTAGATCATGAAGCGACTTGAAAACTTTGTATGTATCTATCATCTCCTCCCTGTTTAGCGAAATTTTTACTATTTTCAAGAAAAACAGACAATTTCTAAGTTTTCTCTAAATGAAGATAGACTGGTCCTTGTCTGCTGAGTACACATCCTCCTCATATGCCATATTTTGTTTACAACAAGTGCTTGTTTTGTCAGTTTCATTAACTTTGAAGATACTAAATCCTATCTTCTAATAATCTTTTGTGTTATATGGAGTACAGAAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAGGTGAGAGTACTTGTGTCGAAGATCTGTTCAAAATTTTGGGGAAGTTTTGTTTAATATTAGTTGTATTAGTAGTAGTAATGCAGAGGAGCAAAAATATTATGGTTTTTACGGATTTGAGTTGTGCGTAATTACCTTTTTATTCTGGACTGCAGCTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAGGTACAGAAAAGATGAAGACATGCCTCCTTTTACTATTTTGAACTTCAAATTCATTTGATGGGCTTGTCTTTAATTAGTAAATTCCACCTTTACATCAGGATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAGGTTAGTCTTCTAAAAAGTTGGCTTGGCTGATCTATTACTTGAAATTAAGATAAAAGGTAATAAACTCAATTTTTCCTCTAATTCAAAATGTGAAGTTTACCCTCTGGGATTCTTCTCATTTGATTGAACAGGTAACCTTATCAGTATCACAAATTGACAAGGATCCTCATCCTCTTGTAGGGAAGGAATCCATGAGAATAGAAGATAAAAATAATGAAAAATAGCTAGCTTGTTTAAGATTTAACCTTACTGGCACCTGAGGTGCGAATGGAATATTGAGTTGAACTTGATTTAGTGCATAAAATCAAGTGGAGCCTCATCTATCCTAGTTGCTTCAATTATCCTCATTATGCCATATTCTGTGCCTGATTATTGTTGTTGCATCATTTTGTTTTGAACAACTTGAATATTATTTTCTTTTACTTGGTTCTGCATCTATGTAGAAGTGATGTCAATAACCTTGGAGATGTCTCTTTGCTAATTTGCACTGGTTGCCTCCTAAACATGTTTTATGTGGGGTTCCCATTATTCTAAAGAAAATTTTGTGAAGGAAAATATATTCCAATCGGAGAGAGCTCTTGAATATTATGAACATTGAACTGGACTTGGTGATATCCTATTGCAAAAATTGTAAATATTGCTAAAACAACTGCCAGCTACCTTTGACTAATTAGAAGAATTGGCATGAATTTCTGAGAGGGCTCTACAACTCAGTGCTCTGATTTTGAAACATAATTCTCTGCATGTTGCTCATCACTTACTTTGTTCCATGTTATAATGCCTTTTTAGGTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTGGTATTTTGTCTCATGAATCTGCATTTAGATATTTAGATATTTCTCTCAAATGATAATGCTGTTTGTCTTAAAGTTCCTCTTTTGTGTTCACTGTTACAGGGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGTGTAAGATTAGTATATGGTGGAACCTCTTTTTTATTTCATCATTGTTAAAAGAATGATTTCATGACTACTTGCCTAAATGGTACAATGATCTCTTAGGGAGCTCCTCAAGGAGGATTCAGAAGATCTCTTAAAGCTTCCCACGGAT</genome_strand>
        <mrna_strand>CATTGTTTATCTTTTCACTCATATAAAAAATTCTCTTTTCATCTGTTCTTCTACATAATATATATAATCCTCCAGTTCTCATAATTCCATTATTAAAAGCTTACGATATCAGTGTCCCGTATTATCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGC.............................................................................GTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAG........................................................................................................................................................CTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAG..................................................................................................GATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTG...................................................................................................GGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGT................................................................................................GGAGCTCCTCAAGGAGGATTCAGAAGATCTCTTAAAGCTTCCCACGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595060" ref_strand="+" ref_description="SGN-U595060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|5442410|gb|AAD43334.1|AF159254_1 (e_value=1e-23) ascorbate; (*ATH) AT4G35000.1 (e_value=1e-25)  Symbol: None | L-ascorbate peroxidase 3 (APX3), identical to ascorbate peroxidase 3 (Arabidopsis thaliana) GI:2444019, L-ascorbate peroxidase (Arabidopsis thaliana) gi:1523791:emb:CAA66926; similar to ascorbate peroxidase (Gossypium hirsutum) gi:101... ; (*SWP) sp|Q42564|APX3_ARATH (e_value=9e-25) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3; ">
      <seq>gcaaaaggcgaagatcatttggcataatatatagtttcagcgtaccattcatggcgccacaagtagatgagaaatatcgtgaagagataaacaaagcacgaatagaacttggaaatcttgtaaaatcgaaggagttcagtgctcctgatttccttcgtttagcgtacgcatcccaattcacaattgccaattctcatcataacgatgatgcagcaaatgctacttctactcatgatgccacaaaaaagaaaactcaatctgccaataataattctctcaacacaattgataaaatcaaggccaatcatcccataataacgtatcctgacctctatcagcttgctgggattgttgctgttaaagaacttggtggtatagacatcgagtttgtccctggtagaacggaatcattaattttaccagatgaaaactgccttcctgatgtcaaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="39794" stop="41926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40093" g_stop="40380" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40381" i_stop="40511" i_length="131">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40512" g_stop="40561" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="338" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40562" i_stop="40675" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40676" g_stop="40741" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="404" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40742" i_stop="41272" i_length="531">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41273" g_stop="41321" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="453" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41322" i_stop="41421" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41422" g_stop="41507" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="539" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41508" i_stop="41607" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41608" g_stop="41625" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="557" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U595060" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40093" e_stop="40380"/>
          <exon e_start="40512" e_stop="40561"/>
          <exon e_start="40676" e_stop="40741"/>
          <exon e_start="41273" e_stop="41321"/>
          <exon e_start="41422" e_stop="41507"/>
          <exon e_start="41608" e_stop="41625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTGGTAAGTTTATATTTCATATGAATCGATTGTTGGTGTATCTTTTTGAATTAGACTAAAAAAAGAAAGTAAGAGAAATAAATCGAAACAGAGGGAGTACTATGCACCTTCTTATTAATGCCTTTATATTGCAGATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAGGTGAGATATATATATACTTGTTGTATCAATAATAATTATCCGTTTTGTAATTTGCTAATTTAATTAACACCAGATGCATGCAAGCTAGTAATTGTTGAATATTTGGTACTGCAGCTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACGGTACGCAAAGGAAATATGAAAATTTATAATCCTATGTCATACAGTTTAAGAAAGACTTTTAAAAATTGTGATTTTAAACCTGTTTGACCGGGTGACTGTGAATCAAGGATAAGAAAGAGAATTTTAAAGTTAATATTTCTAATTATAGAAAGATAACATTATTTTAGGAACGGACTAAAATGAAAATTGTACCACATACATTGGGACAATGCTAATTAGTATACTACTCCTTCTGTCCCAATTTATATATGACACCTTTTATGTTTTGAGAGTCAAACAATATAAGTTTGACAGGAAATTTGCGCATGAAATCTTCAATTTTTTTGAAATGAAATTTATATATTTATAAACTACGTAAAATATACTACGAGTTATAATAATTGATAATTCAAAATGTTTAAAAGACCTGTGAAAAATTTAAGATCACAGATAGACTTGCTTGACTCTTGAAATCTGAAAAGTGACGTATAAACTTCTTTACCCTATTATTTATTTGAAACGCATCACTAAATTTTGCTACCTTTCTACCAGGAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAG</genome_strand>
        <mrna_strand>GCAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG...................................................................................................................................ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG..................................................................................................................CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584393" ref_strand="+" ref_description="SGN-U584393 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|15236239|ref|NP_195226.1| (e_value=4e-39) ascorbate peroxidase, putative (APX) [Arabidopsis thaliana]; (*ATH) AT4G35000.1 (e_value=3e-41)  Symbol: None | L-ascorbate peroxidase 3 (APX3), identical to ascorbate peroxidase 3 (Arabidopsis thaliana) GI:2444019, L-ascorbate peroxidase (Arabidopsis thaliana) gi:1523791:emb:CAA66926; similar to ascorbate peroxidase (Gossypium hirsutum) gi:101... ; (*SWP) sp|Q42564|APX3_ARATH (e_value=3e-40) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3; ">
      <seq>acgaggacgcgaagatcatttggcataatatatagtttcagcgtaccattcatggcgccacaagtagatgagaaatatcgtgaagagataaacaaagcacgaatagaacttggaaatcttgtaaaatcgaaggagttcagtgctcctgatttccttcgtttagcgtacgcatcccaattcacaattgccgattctcatcataacgatgatgcagcaaatgctacttctactcatgatgccacaaaaaagaaaactcaatctgccaataataattctctcaacacaattgataaaatcaaggccaatcatcccataataacgtatcctgacctctatcagcttgctgggattgttgctgttaaagaacttggtggtatagacatcgagtttgtccctggtagaacggaatcattaattttaccagatgaaaactgccttcctgatgtcaaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcaggctacaaatttgaaattggacaactcatactttgtggacctcctcgacaagaagaagaatttaagtcccgcggaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggatttctttgaggactatgaagaggcacacaagaagctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccgcggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="39793" stop="42678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40100" g_stop="40380" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="289" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40381" i_stop="40511" i_length="131">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40512" g_stop="40561" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="339" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40562" i_stop="40675" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40676" g_stop="40741" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="405" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40742" i_stop="41272" i_length="531">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41273" g_stop="41321" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="454" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41322" i_stop="41421" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41422" g_stop="41507" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="540" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41508" i_stop="41607" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41608" g_stop="41660" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="593" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41661" i_stop="41752" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41753" g_stop="41846" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="687" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41847" i_stop="41991" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41992" g_stop="42378" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="1074" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U584393" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1066</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40100" e_stop="40380"/>
          <exon e_start="40512" e_stop="40561"/>
          <exon e_start="40676" e_stop="40741"/>
          <exon e_start="41273" e_stop="41321"/>
          <exon e_start="41422" e_stop="41507"/>
          <exon e_start="41608" e_stop="41660"/>
          <exon e_start="41753" e_stop="41846"/>
          <exon e_start="41992" e_stop="42378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTGGTAAGTTTATATTTCATATGAATCGATTGTTGGTGTATCTTTTTGAATTAGACTAAAAAAAGAAAGTAAGAGAAATAAATCGAAACAGAGGGAGTACTATGCACCTTCTTATTAATGCCTTTATATTGCAGATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAGGTGAGATATATATATACTTGTTGTATCAATAATAATTATCCGTTTTGTAATTTGCTAATTTAATTAACACCAGATGCATGCAAGCTAGTAATTGTTGAATATTTGGTACTGCAGCTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACGGTACGCAAAGGAAATATGAAAATTTATAATCCTATGTCATACAGTTTAAGAAAGACTTTTAAAAATTGTGATTTTAAACCTGTTTGACCGGGTGACTGTGAATCAAGGATAAGAAAGAGAATTTTAAAGTTAATATTTCTAATTATAGAAAGATAACATTATTTTAGGAACGGACTAAAATGAAAATTGTACCACATACATTGGGACAATGCTAATTAGTATACTACTCCTTCTGTCCCAATTTATATATGACACCTTTTATGTTTTGAGAGTCAAACAATATAAGTTTGACAGGAAATTTGCGCATGAAATCTTCAATTTTTTTGAAATGAAATTTATATATTTATAAACTACGTAAAATATACTACGAGTTATAATAATTGATAATTCAAAATGTTTAAAAGACCTGTGAAAAATTTAAGATCACAGATAGACTTGCTTGACTCTTGAAATCTGAAAAGTGACGTATAAACTTCTTTACCCTATTATTTATTTGAAACGCATCACTAAATTTTGCTACCTTTCTACCAGGAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGC</genome_strand>
        <mrna_strand>GCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCGATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG...................................................................................................................................ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG..................................................................................................................CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT............................................................................................GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569320" ref_strand="+" ref_description="SGN-U569320 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118489615|gb|ABK96609.1| (e_value=7e-23) unknown; (*ATH) AT1G24580.1 (e_value=2e-12) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein | chr1:8710167-8710811 FORWARD | Aliases: None; ">
      <seq>aggaacagaagaacatattatttatatatantttaggaaagtgatgacagttgtgtttttccactaagaaaaactatactctcttttgtgagtgatggggttcctattccatgtgattgaattaccgaaattggcattcttatggagatatctcaaattaacggtgattgttttcgttactcggctgggactctgcaaacctccccctgaagaagacgatgccgattcaagctacaaccccaatagttacatccttctattagacggcacttgcccttcccttgtcaccgttccaatcgaggttgccaccgccgccgtcaagctcaaagtccccatactcctctacagcgattacctcctctgccgccggcggaaatgcggtcaatcagtgaagggatgctcaatctgccttgaatccatggagctagatgaggaggtcagagagctcatcacctgcagccatgtcttccacaggggatgccttgatacttgggtgaacgatggacacgtcacttgccccttgtgcagatctatgttgctaccccctaagttgacctctttccgatctaattctctaaatccatccattagttagttttcgatgcttattacaaacttctgctttaactataacagatgcaaaattagtgtttacagacatttcctgtacagatttccatactttttctaataaaaaatctgataaacttattgagacttttgcataagctatagaacagttacaaagttagtttcctgtacagattgcaatactattgcttatcaaagctctgctttaagctcatgagttttctgagctcttccatttttgtttgtttcttccgtttttgatagagagggtatgatggttaggcttttcttttagtcaaggaaagaatgggtggaaaccatcaacttgctggtctatggggcttggttaaataaggcatccataccaacctgtaagcattttgcttcatctgatgacattggcatgagctgttaggtgcaacaatgggaatgtgtgttcctgtccccatttctgattttctaattgcctttgttgcttcataaccatccatcttcggcatttgacaatccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="52564" stop="54252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52864" g_stop="53941" g_length="1078"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1087" r_length="1087" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U569320" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1078</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52864" e_stop="53941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAGAAGAACATATTATTTATATATA-TTTAGGAAAGTGATGACAGTTGTGTTTTTCCACTAAGAAAAACTATACTCT-TTTTGTGAGTGATGGGGTTCCTATTCCATGTGATTGAATTACCGAAATTGGCATTCTTATGGAGATATCTCAAATTAACGGTGATTGTTTTCGTTACTCGGCTGGGACTCTGCAAACCTCCCCCTGAAGAAGACGATGCCGATTCAAGCTACAACCCCAATAGTTACATCCTTCTATTAGACGGCACTTGCCCTTCCCTTGTCACCGTTCCAATCGAGGTTGCCACCGCCGCCGTCAAGCTCAAAGTCCCCATACTCCTCTACAGCGATTACCTCCTCTGCCGCCGGCGGAAATGCGGTCAATCAGTGAAGGGATGCTCAATCTGCCTTGAATCCATGGAGCTAGATGAGGAGGTCAGAGAGCTCATCACCTGCAGCCATGTCTTCCACAGGGGATGCCTTGATACTTGGGTGAACGATGGACACGTCACTTGCCCCTTGTGCAGATCTATGTTGCTACCCCCTAAGTTGACCTCTTTCCGATCTAATTCTCTAAATCCATCCATTAGTTAGTTTTCGATGCTTATTACAAACTTCTGCTTTAACTATAACAGATGCAAAATTAGTGTTTACAGACATTTCCTGTACAGATTTCCATACTTTTTCTAATAAAAAATCTGATAAACTTATTGAGACTTTTGCATAAGCTATAGAACAGTTACAAAGTTAGTTTCCTGTACAGATTGCAATACTATTGCTTATCAAAGCTCTGCTTTAAGCTCATGAGTTTTCTGAGCTCTTCCATTTTTGTTTGTTTCTTCCGTTTTTGATAGAGA-GGTATGATGGTTAGGCTTTTCTTTTAGTCAAGGAAAGAAT-GGTGGAAACCATCAACTTGCT-GTCTAT-GGGCTTGGTTAAATAA-GCATCCATACCAACCTGTAAGCATTTTGCTTCATCTGATGACATT-GCATGAGCTGTTA-GTGCAACAATGGGAATGTGTGTTCCTGTCCCCATTTCTGATTTTCTAATTGCCTTTGTTGCTTCATAACCATCCATCTTCG</genome_strand>
        <mrna_strand>AGGAACAGAAGAACATATTATTTATATATANTTTAGGAAAGTGATGACAGTTGTGTTTTTCCACTAAGAAAAACTATACTCTCTTTTGTGAGTGATGGGGTTCCTATTCCATGTGATTGAATTACCGAAATTGGCATTCTTATGGAGATATCTCAAATTAACGGTGATTGTTTTCGTTACTCGGCTGGGACTCTGCAAACCTCCCCCTGAAGAAGACGATGCCGATTCAAGCTACAACCCCAATAGTTACATCCTTCTATTAGACGGCACTTGCCCTTCCCTTGTCACCGTTCCAATCGAGGTTGCCACCGCCGCCGTCAAGCTCAAAGTCCCCATACTCCTCTACAGCGATTACCTCCTCTGCCGCCGGCGGAAATGCGGTCAATCAGTGAAGGGATGCTCAATCTGCCTTGAATCCATGGAGCTAGATGAGGAGGTCAGAGAGCTCATCACCTGCAGCCATGTCTTCCACAGGGGATGCCTTGATACTTGGGTGAACGATGGACACGTCACTTGCCCCTTGTGCAGATCTATGTTGCTACCCCCTAAGTTGACCTCTTTCCGATCTAATTCTCTAAATCCATCCATTAGTTAGTTTTCGATGCTTATTACAAACTTCTGCTTTAACTATAACAGATGCAAAATTAGTGTTTACAGACATTTCCTGTACAGATTTCCATACTTTTTCTAATAAAAAATCTGATAAACTTATTGAGACTTTTGCATAAGCTATAGAACAGTTACAAAGTTAGTTTCCTGTACAGATTGCAATACTATTGCTTATCAAAGCTCTGCTTTAAGCTCATGAGTTTTCTGAGCTCTTCCATTTTTGTTTGTTTCTTCCGTTTTTGATAGAGAGGGTATGATGGTTAGGCTTTTCTTTTAGTCAAGGAAAGAATGGGTGGAAACCATCAACTTGCTGGTCTATGGGGCTTGGTTAAATAAGGCATCCATACCAACCTGTAAGCATTTTGCTTCATCTGATGACATTGGCATGAGCTGTTAGGTGCAACAATGGGAATGTGTGTTCCTGTCCCCATTTCTGATTTTCTAATTGCCTTTGTTGCTTCATAACCATCCATCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603568" ref_strand="+" ref_description="SGN-U603568 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60545052|gb|AAQ10680.2| (e_value=2e-122) cold; (*ATH) AT2G17820.1 (e_value=4e-115) | Symbol: None | histidine kinase 1, 99% identical to GP:4586626 | chr2:7750006-7755302 REVERSE | Aliases: T13L16.16, T13L16_16; (*SWP) sp|Q54YZ9|DHKJ_DICDI (e_value=1e-12) Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ; ">
      <seq>ggcactgtatagtgtaggtcaattgatgaaagaaattgttgagtttcatagtggtcacatttatttaacctctcaagaaggatggttgctcgctacatccacgaatagccctctcttgatgaatactacaaaaggaccaaagctaatgatggctattgattctgaagaccccgttatacgatctggggctgagtgcttacagaaggattatggaaagaggcttaccccaagtcaagaagtgcacatagagaatgctaaacttgggaatcagctctattatattgactcattttacctgcagttaaagagacttccaatggtaggagttatcatcattccaaggaaatatataatgggaaaggtagatgagagggctatcaagactcttgtaatattgatctcagcatcaatatgcatcctaatcattggatgtgtctgcatcttcgtactaacagatggagtgtcaaaggaaatgaaacttagagcagagctgataagccagttagatgcaagaaggaaagcagaggcatcgagcaattacaaaagccaatttctagcgaacatgagtcatgaattacgaacacctatggctgcagttattggcttgctggacattcttataagtgatggttttcttacaaatgaacagtatgcaactattactcaaattcgtaaatgctcaactgccttgcttcggcttctaaacaacattttggatctcagtaaggtagaatctggaaaactagtgttggaagaaacagaatttgacttggctcgagaacttgaaggacttgttgatatgttctctgtccagtgcattaatcacaatgttgagacagttctagatctctctgatgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="58101" stop="56204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57802" g_stop="57484" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57483" i_stop="57393" i_length="91">
            <donor d_prob="0.608" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57392" g_stop="57145" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="567" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57144" i_stop="57007" i_length="138">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57006" g_stop="56847" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="727" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56846" i_stop="56637" i_length="210">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56636" g_stop="56510" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="854" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56509" i_stop="56421" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56420" g_stop="56413" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="862" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U603568" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57802" e_stop="57484"/>
          <exon e_start="57392" e_stop="57145"/>
          <exon e_start="57006" e_stop="56847"/>
          <exon e_start="56636" e_stop="56510"/>
          <exon e_start="56420" e_stop="56413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATGGTAAATTGTTAGCTTAGTACACTTCAGTATCATGATTGGATAAGCTCGTTCTGCTGATTTATCGATGCTTAATGATCTGCAAACTTTGCAGGTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAGGTGAATATTCATCACTCCTTTGTTACTTCCGCTCTTCTATTCTACATCTTACCTCTGCGAAAGATTCATTCTCAGTTTAAATTTTTAGTTTCTCATATGTACATTTCTACAGTTACTTCATGCTTTGTTTTTTCACAGTCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAGGTAAGATGCACACTAACAACTCTTTTGATGATACTTTTCGAAAGAGTTTACTCTTTGATTAACTAAGGTCACCCTACTGTTCCTCGGAGAGATTATAGCATAGATGAAATGGTAATAGACTATTTAGGGTAATGTTGCAGCTAGCTTAAGCTCATTACTCAAAAGAGTGTTTTAATTAGACCTGAGAAAAATCATATATTCATTGGGCAGGTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTGGTACATCATTGTTCTCCTTACAAATTGATTTCGAGACTCTTCACATTGTTTTCTGAATGCATATTATTTTCTCATTTTTCTATCTGTAGATGATATG</genome_strand>
        <mrna_strand>GGCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATG...........................................................................................GTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAG..........................................................................................................................................TCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAG..................................................................................................................................................................................................................GTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTG.........................................................................................ATGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566245" ref_strand="+" ref_description="SGN-U566245 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157354845|emb|CAO48191.1| (e_value=1e-179) unnamed; (*ATH) AT5G66150.1 (e_value=2e-162) | Symbol: None | glycosyl hydrolase family 38 protein, similar to lysosomal alpha-mannosidase SP:O09159 from (Mus musculus) | chr5:26456239-26461660 REVERSE | Aliases: K2A18.23, K2A18_23; (*SWP) sp|O09159|MA2B1_MOUSE (e_value=2e-71) Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1; ">
      <seq>gcttggatggaatcgaactgatatcatcaagatcccggtcaacgatgctgatcttattgtaaaagattccatgggaaatctaattgaggcacaatttatagagttggataatattaccagcaacttacgaaagttgtatgttaaggcatatcttggaatatcacccaaacaaactcccaaatattggctcttctttcgagtgtctgtgtcacctcttggctggaatacttattttatttctaaagcttcacagaaggggagctctgcgggctatgtcacaaagatggacattccactgaacgagactgttgaaattggaccagggaacttaaaggcgtccttttcctcaagtactggtcaacttaaacgtctatataattctataacaggagttgatatacctgtacaacaaagctatctttggtatgcctcgagttcgaacttggatcaggattctggtgcctacattttcagacccgatggatcacccccagtcatagttgcgagatcagttccaataaaggtaatgcgtggacccctggtcgatgaaatccaccagcaattcaactcatggatatctcaggtaattaggatttacaaagacaaagaacacgctgaactcgaattcactattggtcctataccgacagaagatagtgttggaaaagaggtcattaccaaaatcacagcaaatatggccactgataaagtgttctacactgactctaatgggagggactttcttaaaagagttagaaattacagagctgattgggacctccaagttactcaacctgttgctgggaactattatccagtaaatcttggaatgtacataacagataacaaatcagaattgtctgttttggtagatcgtgcaacaggtggagccagcataaaggatggagaaatagaactcatgttgcacaggcgcttgatcaatgatgatggtagaggagtgggtgaagcccttgatgagcctgtctgtgtggggagtacatgtgagggactcacggttcgagggaactactatctgggaattcataaaaacagtgatggttcacgttggcgcagaacaactggccaagaaatttattcacctcttattttagcttttgcacatgagaatcaggaagaatggaaagcttcgcatatgaccaaagccaccatcatgaatcccaattatagtttacctcctaatgttgcactgattactctccaggagttggataacggaggtgtacttatccgtttggctcatctatacgaggctggggaagacgctgattattcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="75269" stop="70674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74970" g_stop="74934" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74933" i_stop="74725" i_length="209">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74724" g_stop="74505" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="257" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74504" i_stop="74356" i_length="149">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74355" g_stop="74222" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="391" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74221" i_stop="73664" i_length="558">
            <donor d_prob="0.447" d_score="1.00"/>
            <acceptor a_prob="0.063" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73663" g_stop="73604" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="451" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73603" i_stop="73507" i_length="97">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73506" g_stop="73447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73446" i_stop="73269" i_length="178">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73268" g_stop="73197" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="583" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73196" i_stop="73075" i_length="122">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73074" g_stop="73027" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="631" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73026" i_stop="72947" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72946" g_stop="72827" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="751" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="72826" i_stop="72305" i_length="522">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72304" g_stop="72239" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="817" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="72238" i_stop="72157" i_length="82">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="72156" g_stop="72044" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="930" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="72043" i_stop="71944" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="71943" g_stop="71859" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="931" r_stop="1015" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="71858" i_stop="71697" i_length="162">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="71696" g_stop="71586" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1126" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="71585" i_stop="71454" i_length="132">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="71453" g_stop="71358" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1222" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="71357" i_stop="71272" i_length="86">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="71271" g_stop="71224" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1223" r_stop="1270" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="71223" i_stop="71001" i_length="223">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="71000" g_stop="70974" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1297" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U566245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74970" e_stop="74934"/>
          <exon e_start="74724" e_stop="74505"/>
          <exon e_start="74355" e_stop="74222"/>
          <exon e_start="73663" e_stop="73604"/>
          <exon e_start="73506" e_stop="73447"/>
          <exon e_start="73268" e_stop="73197"/>
          <exon e_start="73074" e_stop="73027"/>
          <exon e_start="72946" e_stop="72827"/>
          <exon e_start="72304" e_stop="72239"/>
          <exon e_start="72156" e_stop="72044"/>
          <exon e_start="71943" e_stop="71859"/>
          <exon e_start="71696" e_stop="71586"/>
          <exon e_start="71453" e_stop="71358"/>
          <exon e_start="71271" e_stop="71224"/>
          <exon e_start="71000" e_stop="70974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGATGGAATCGAACTGATATCATCAAGATCCCGGTGAATGAATAATCTTTTCTGTTTTTTCTTTCTGTTGCTCATTTTATCATTAGACCAGTCGCCAGCTGATTTTATTTAATATGTCAGTCCCATATAATTCAGACAATTATATAACTGATCTATTTTCCTAATTCTCTTTCTTTCTCTTATGCTTTTTTGGAATGGCTTATTCACTGTTGATGGTTATCTAATTGTATTTGCTTTAACAGGTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGGGTAATACAAAATGTTCTATCTCTCTATGTCTCTTTTTCATCACTAATATGCTCATAGATGACTAAAATATAAGAAGGCATTGCCTGTTTTCAAAAAGTAAAATGATAAATCCATCCTTCATATGTTTCAATGTCTGCTGAAATATACAGGGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGAGTAAGTTCTTAATTATGTCAGTATCTCAACCTGGAAGCATATTGAATGCATCCTTGCCATTTTTTTTCTTGCTGAGTTAAGACTTGTAAAGCATACTAGTTATTTACCTGGACGCGGTCTAACGGTCCTTGTCAACAGGTTATACTCTATTACATGCTATCAAATGCATTATATTCTCTTTTTTCTTCATACAAGTCTCATCTCTCCTCCCCGGTTTATTAGGGTCGGGATGATTACATCTGCTGAAATATATCTAAAACAAAGAGTAGAATGAGAACTTTGATCCAATTGCTTAGGAATGAAGATAAGGGTGGGTTTATAAGTAAAGGCTGTTGTTTTCTTTGATTGTCATCTACTAAATTACATTAAAAAAACTTTTAGTAACAAACAAAAGATCTTCCATTCTATTTCTGTGCATAGCTGTGACAGACATGCTTGATGATGATTATAGTACACAAAATAATTCATATTACCCCGTATTTATCTAGTTGATCTTTGTCTTTCTTTTCTATGTCGAGGGCCGTCTCATCCTTCTAACTAACAAATGACTATTATTAGGTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAGGTACTTGCTGATGTTCTTGTAGGTATAATTAAATGTTGGATGGCATTACTAAAGGAGACATAGTAAGTTAGGATGTTAATTGTATTATCCATTGCAGGATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCAGTGAGTAGTCTTCTCCCTTTTGTTCCTGTTATTTAACAAGTAAAACTGATTACAGCAATTGTGGTCCTACATCTTTTCCGAAATAAATCAATTAGTTATTTCACTGAAGTTTTGATTTGCATCTCTCACACAGTATCTAGTTTTCTTCATAGCAGAATAATTTCCTTTTTGCTAGCAGGTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAGGTGTGGTGCATGATTCCTTGATTAACTCAATTTTAGTCAGCATCATTTTGATCTTTTCCAATTTATTCTGTTATAAACTGTATTGATTGATTCTATTATGTCTTGATATGTCAATGTTTCAGGTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACTGTAAGTCAACTCTGCCGAATGATATTTCACATTGAAGGGTAGTTATGAACTGTATATCTGACATACCTCTTCAATTGAAGATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGAGTAAGCTTAACTTTTCGTTCCTCTTTAAGTACATTTAAGCTGTATAAAACCTAAGGAGACAGTTTCTCATTAATATAGTCTCTTTGTTCTGTGTGCATATATCTTGTCAATATACTCTCTCCCTTTTTAGTTCATGTTTATTGTCTCAACATTTTGACTTTCATTACCTTATACTATGGCAACGTGCTGAGAGCTTTTGTCAATGTCCGTTTAAATTCCTTGAAGTGTTTATCTACAAATTGAAACAAATGTCATTGAGTTGTATCACCATCTATTCAATTTGAACTAGATAATTCTTGATGTTGGCTTACTAGCTGAACATGCTTTTATCTGTCTGCTATATTGGCTCAATGTGCTTGTTAATGGAACAGAAATATTATAAACATCCTTTACATTGGCAATTTATGAACAAGGAAAATAGTCATCAGGATTTCAATGTACTGGGCTTCATATTTTATTCACTTTATCTCAATTTTCTGTTTATTTTTGAGCTAATTTGGGTGATAATTTGTTGCTCATCAGGTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCAGTTACTTTCCCAACAGACTTTCTTGAATTGAAATTGCACTTTTATGATTGAGCTCACGTATTGATACTATGTTTATTCTCAGGTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAGGTTCAAATCTTTGAACTTTTTTCTTTAGTTTGTTTATAAATATATCATGCTTAATATAATTGTTGGACTTCCAAATGTAATGGATTTCAAATTATACCAGGCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACGGTACGTTTGATATGGCATTCCAAAGCAGGCCTAGGCTGCAATAAGATTTCAACCGTAACTTAGCTGCTCATCAAGGAAAATGTACTTCAGAAATACAAAATGTAGCAACCTCTGATTAGTATGCTTCTTTTGAACTTACCTGTTCTCATATCCCTTGGTCAGGTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAGGTAATCTCAACAATCTACATATTATGAAGAGGACCAAATTCGGCAGGCCCTACACACCTTATGATATTCCTTAATTTTAAATGATCAATATTTTTGCTTGATATCGGGAAATTGCACAACTTGATCTTGCAGAATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAGGTTATTATTGTATAGAGCGTGCAGTGATTAAAATGATCCTTATCCTTTGATGAAATAATGAAGTCATTTCTGTTTTTATCTTCCAGGAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATACGAGGTAAAATCTTCTCTCATTTGCTTGTCTCAGCCTCACTTCACCAAGAAACAGCGGCTTTACTTCAGAAAAATCATTAACTTCTTACATTTACTTGAATTCTGAAACAAAATATAAAATTGAGAGTGTGACACATGACATCATTATATGTTGGACCTATGTTTTGTGCCTTGTTAACTGATATCACTACTGATCATTGTGATTTATGTGTTGTGGATGTGCATAGGCTGGGGAAGACGCTGATTATTCGAAA</genome_strand>
        <mrna_strand>GCTTGGATGGAATCGAACTGATATCATCAAGATCCCG.................................................................................................................................................................................................................GTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGG.....................................................................................................................................................GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG.................................................................................................GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA..................................................................................................................................................................................GTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAG..........................................................................................................................GTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT................................................................................ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA..................................................................................GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAG....................................................................................................GCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACG..................................................................................................................................................................GTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAG....................................................................................................................................AATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAG......................................................................................GAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATACGAG...............................................................................................................................................................................................................................GCTGGGGAAGACGCTGATTATTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589137" ref_strand="+" ref_description="SGN-U589137 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147770065|emb|CAN65410.1| (e_value=9e-115) hypothetical; (*ATH) AT3G26720.1 (e_value=5e-103) | Symbol: None | glycosyl hydrolase family 38 protein, similar to lysosomal alpha-mannosidase GI:3522867 from (Homo sapiens) | chr3:9817891-9824423 FORWARD | Aliases: MLJ15.19; (*SWP) sp|P34098|MANA_DICDI (e_value=2e-52) Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA; ">
      <seq>gtgatcagacaacactaggccatcaactgataaagaatgaattcaatatcactcctcgtgcaggatggcagatcgatccatttgggcactctgccgtgcaagcttatcttcttggcgcagaggtaggatttgattctgttcactttgcgcgcattgattatcaagacagagcaaaacgtaaggaggataaagctcttgaggttatatggcgtggttcgagaacatttggttcttcctcccagatatttaccaacgcatttcctgtacattatagtccaccacatggttttcatttcgaagtggatgatgctgatgattttgttccagtccaggatgatcctcttatctttgacataaatgtcgatatacgggttaatgacttcatcaatgctgcaattacacaagcaaacgtgacacgtacgaatcacgtcatgtggaccatgggagatgacttccaataccaatatgctgaatcttggttcaaggaaatggataaattaattcactatgtcaacaaggacggtcgagtgaatgcattgtactctactccatcaatttatgtagatacaaaacatgcaaccaatgaatcttggcctctaaaaactgatgattactttccatatgcagatggtgaaaattcttattggactggtttctttaccagtcgaccagctttaaagcgatatattcgtatgctaagtggatattatctggcggctcgccagctttgattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="78285" stop="75432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77986" g_stop="77865" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77864" i_stop="77715" i_length="150">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77714" g_stop="77595" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="242" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77594" i_stop="77511" i_length="84">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77510" g_stop="77421" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="332" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77420" i_stop="77327" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77326" g_stop="77255" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77254" i_stop="77137" i_length="118">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77136" g_stop="77023" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="518" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77022" i_stop="76731" i_length="292">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76730" g_stop="76630" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="619" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76629" i_stop="76546" i_length="84">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76545" g_stop="76452" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="713" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76451" i_stop="75754" i_length="698">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75753" g_stop="75729" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="738" r_length="25" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U589137" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77986" e_stop="77865"/>
          <exon e_start="77714" e_stop="77595"/>
          <exon e_start="77510" e_stop="77421"/>
          <exon e_start="77326" e_stop="77255"/>
          <exon e_start="77136" e_stop="77023"/>
          <exon e_start="76730" e_stop="76630"/>
          <exon e_start="76545" e_stop="76452"/>
          <exon e_start="75753" e_stop="75729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAGGTATGTAAGCTGAGCGTTCATAAGATGTGGTTTAGAGTGTATTATATATAACTTAAATTTTTATTAGACGTAAATTATTTTGAAGTTTATAATCCTGATCTGACTCGAAATATTGATACTTCTTTCACTTCTCCCGGATAACTTTCACAGGTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAGGTTGATGAAGCATTCTTAAGCTTTGTGCATTTATTTTATATCATTGCTCACTTGTGGTTAACACTGTTTGTGGTTCCTTTGCAGATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAGGTACTGGCAGAAATAAAAGATTAGTCTCTCTATGGTTTGTTTTAGTATATCAAAGGAGAACAAATTTCTGATATATTTGGTATATGAATTGCAGGATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAAGTACCCTGATTACAATTCTTTTCAGTTATTCATAATCATCAATTTTCGTAGAACTGTAGCTAGAAATAGATCTACATGTAAATGCAATGAATGAAAAGCTGAATATTGTGATGTGTAGGCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAGGTAAATACTTCAGGCTCTGCAGAAATTTAGTTAAATCCTCGATAAAAATCTTGAACACGTTTCTTCAACTGTCTGAGTGATTGCTTCAATATGTCTTCTCGTAAGTTCTATTTCAAGAAAATGTAATAACAAGACTCTTAGCCTGTTTTGGTGTTGTCCAGTACATTTATCAGCTAGCTCAAAAACTTCATGAGCGAATCCTAATGGAGAACCAATAGCTCTATTTGTTCCAGTCCAGTTTAAACATTTGCAAAATCATAGAGACTAACTTGCTCTCATTTTCTTTTGACAGGACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCCGTGAGCACTTGCTTGATATTCTATACCTCCTGGTTTATCTTGAATATTTTATGGAGTTTATCTAACATCCCTAACTAATTTCAGATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTGGTGAGCCTGCTTAGCTTCTTTCTTCTGGCTCCATGATTCCATATTACAAAATCAACGTCAAAAGGAACCTGAATGTAGTAAAGAAAATTGTGTAACTGTGATCTCCATTTTGATAACCTAGTTTCTGTCACCGGTCTCTATGAGAAGCTTAATAAGATATCCTTACAGTTGGAATCTGACCATCTGATCTAATACTTTAAGCTATTAGAGAGAGCACACTTTTATTTACTTACTCTATCATATTATGTCTCAACACACTCCTCACATGTTGGCTTAAGTTTTTTATTGACCTCGTTCTTGCTCTGGTATCATGTTGGACTGTGCAACTAATCTCATCTAAAAGCTTAAACTGTAAAAGTGTGTTTACTTTTTAAGTGGTTATTGTGTTATGTGTCAACATTTATTATGGTTGTACCTCAATGTACACGGTGATTGGTAAATTGTTCTTAATCTTGCTAACAATTGGAGTTTCTGTTGTCGTTACTTCACTTAATCTAGGATAAGGTCATGCGAAATGATGTTAAATGGGTTCAACTAAACCCAACATTTTGCACATGGAGCATAGATATCTCTGTAGAAACTACTAAAATTTTATCATATACTTAAATTTGAGTCCATATTTGCCAAAGCATAATGGGTTCAGTAGTGAGATTATAGGTTGAAGACATCAAATTTAACCTTGAATTATCCTTTGACAGGCGGCTCGCCAGCTTGAATTCTTAA</genome_strand>
        <mrna_strand>GTGATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAG......................................................................................................................................................GTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAG....................................................................................ATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAG..............................................................................................GATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAA......................................................................................................................GCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAG....................................................................................................................................................................................................................................................................................................GACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCC....................................................................................ATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTCGCCAGCTTTGATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576660" ref_strand="+" ref_description="SGN-U576660 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354845|emb|CAO48191.1| (e_value=1e-106) unnamed; (*ATH) AT5G66150.1 (e_value=6e-96) | Symbol: None | glycosyl hydrolase family 38 protein, similar to lysosomal alpha-mannosidase SP:O09159 from (Mus musculus) | chr5:26456239-26461660 REVERSE | Aliases: K2A18.23, K2A18_23; (*SWP) sp|P34098|MANA_DICDI (e_value=8e-59) Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA; ">
      <seq>agttttctaagttgggtttgaaaatgagaacttctgttaatccagcttcagtttttctgttcattttctgtagtactgtttgtgtttatggggcaattggtgctaatcgatacctaaagtacaatactgggggtaacattgttgaaagcaaactgaatgttcatttggttcctcattcacacgatgatgttggctggttaaagactgttgatcagtactatgttggatcaaataatagcatacagggtgcctgtgttgaaaatgtactggactctgttgttatgtcgttacgtcgtgatcggaataggaaatttgtctttgctgaaatggcatttttccatcggtggtggattaggcaaagcccggaaattcaagcagaagtgaaaaatcttgtagcttctggccagctggaattcgtaaatggtggttggtgtatgcatgatgaagcgactacccattatatagatatgattgatcagacaacactaggccatcaactgataaagaatgaattcaatatcactcctcgtgcaggatggcagatcgatccatttgggcactctgccgtgcaagcttatcttcttggcgcanaggtaggatttgattctgttcactttgcgcgcattgattatcaagacagagcaaaacgtaaggaggataaagctcttgagnntatatggcgtnntnngagaacatttggttcttcctcccaganntttaccaacgcatttcctgnacnttatagtccaccacatggntttcatttcnaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="79041" stop="77154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78741" g_stop="78497" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78496" i_stop="78417" i_length="80">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78416" g_stop="78333" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="329" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78332" i_stop="78209" i_length="124">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78208" g_stop="78120" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="418" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78119" i_stop="78040" i_length="80">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78039" g_stop="77865" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="593" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77864" i_stop="77715" i_length="150">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77714" g_stop="77595" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="713" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77594" i_stop="77511" i_length="84">
            <donor d_prob="0.919" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77510" g_stop="77454" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="770" r_length="57" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U576660" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78741" e_stop="78497"/>
          <exon e_start="78416" e_stop="78333"/>
          <exon e_start="78208" e_stop="78120"/>
          <exon e_start="78039" e_stop="77865"/>
          <exon e_start="77714" e_stop="77595"/>
          <exon e_start="77510" e_stop="77454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCTAAGTTGGGTTTGAAAATGAGAACTTCTGTTAATCCAGCTTCAGTTTTTCTGTTCATTTTCTGTAGTACTGTTTGTGTTTATGGGGCAATTGGTGCTAATCGATACCTAAAGTACAATACTGGGGGTAACATTGTTGAAAGCAAACTGAATGTTCATTTGGTTCCTCATTCACACGATGATGTTGGCTGGTTAAAGACTGTTGATCAGTACTATGTTGGATCAAATAATAGCATACAGGTCATATTTACATCTTATATTCAAATTGGAAATTATGTTTTAGCTGTTGTTAGTAAAAAATGATTGATGATGCATTGCAGGGTGCCTGTGTTGAAAATGTACTGGACTCTGTTGTTATGTCGTTACGTCGTGATCGGAATAGGAAATTTGTCTTTGCTGAAATGGTAAAGCTGTTTTTCTTCTTCTTAATTTTGTGTGCATACAACTTATTTGGTATTGAGGCGAAGTTGTTATAAGGAACAAAAGATGCACAATTCATTAGGCATGTTTCTGTTGATCCTTCTGTAGGCATTTTTCCATCGGTGGTGGATTAGGCAAAGCCCGGAAATTCAAGCAGAAGTGAAAAATCTTGTAGCTTCTGGCCAGCTGGAATTCGTGTATGTTAGCTTTCTTGCAAGGAACTTCTATTTATGTTCTTTCGGGTGAATTTTTTATGAAAAAGAGAATTCTGGAACAGAAATGGTGGTTGGTGTATGCATGATGAAGCGACTACCCATTATATAGATATGATTGATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAGGTATGTAAGCTGAGCGTTCATAAGATGTGGTTTAGAGTGTATTATATATAACTTAAATTTTTATTAGACGTAAATTATTTTGAAGTTTATAATCCTGATCTGACTCGAAATATTGATACTTCTTTCACTTCTCCCGGATAACTTTCACAGGTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAGGTTGATGAAGCATTCTTAAGCTTTGTGCATTTATTTTATATCATTGCTCACTTGTGGTTAACACTGTTTGTGGTTCCTTTGCAGATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAA</genome_strand>
        <mrna_strand>AGTTTTCTAAGTTGGGTTTGAAAATGAGAACTTCTGTTAATCCAGCTTCAGTTTTTCTGTTCATTTTCTGTAGTACTGTTTGTGTTTATGGGGCAATTGGTGCTAATCGATACCTAAAGTACAATACTGGGGGTAACATTGTTGAAAGCAAACTGAATGTTCATTTGGTTCCTCATTCACACGATGATGTTGGCTGGTTAAAGACTGTTGATCAGTACTATGTTGGATCAAATAATAGCATACAG................................................................................GGTGCCTGTGTTGAAAATGTACTGGACTCTGTTGTTATGTCGTTACGTCGTGATCGGAATAGGAAATTTGTCTTTGCTGAAATG............................................................................................................................GCATTTTTCCATCGGTGGTGGATTAGGCAAAGCCCGGAAATTCAAGCAGAAGTGAAAAATCTTGTAGCTTCTGGCCAGCTGGAATTCGT................................................................................AAATGGTGGTTGGTGTATGCATGATGAAGCGACTACCCATTATATAGATATGATTGATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCANAG......................................................................................................................................................GTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGNNTATATGGCGTNNTNNGAGAACATTTGGTTCTTCCTCCCAG....................................................................................ANNTTTACCAACGCATTTCCTGNACNTTATAGTCCACCACATGGNTTTCATTTCNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594517" ref_strand="-" ref_description="SGN-U594517 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3202042|gb|AAC19402.1| (e_value=6e-14) 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum]; ">
      <seq>agtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaacaagatggtgtttaccttcagctacccagcgttttcttttgtgaaaaattatgcgtccccaaaaaatctatgaagtgacaattaatgtttcagtgtcaaaaacatttaattttagcctcttattaacatcctttgtgatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="83751" stop="81457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83451" g_stop="83371" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83370" i_stop="83254" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83253" g_stop="83185" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="150" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83184" i_stop="82317" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82316" g_stop="82242" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="225" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82241" i_stop="82141" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82140" g_stop="81757" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="609" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U594517" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83451" e_stop="83371"/>
          <exon e_start="83253" e_stop="83185"/>
          <exon e_start="82316" e_stop="82242"/>
          <exon e_start="82140" e_stop="81757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTG</genome_strand>
        <mrna_strand>AGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576036" ref_strand="+" ref_description="SGN-U576036 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|157354848|emb|CAO48194.1| (e_value=4e-147) unnamed; (*ATH) AT4G38630.1 (e_value=7e-113) | Symbol: None | 26S proteasome regulatory subunit S5A (RPN10), identical to multiubiquitin chain binding protein (MBP1) SP:P55034, GI:1165206 | chr4:18057124-18059534 REVERSE | Aliases: T9A14.7; (*SWP) sp|P55034|PSMD4_ARATH (e_value=7e-112) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1; ">
      <seq>gccgctacgcgaactatcctgtatcttcttcggattgtgatttttcctccttaaagcaccaactccctccgcaagtaaactcaaattccttccaatttatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaaaaagagggtgtttaccttcagctacccagcgttttcttttgtgaaaaattatgcgtccccaaaaaatctatgaagtgagcattaatgtttcagtgtcaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="88362" stop="81498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88063" g_stop="87882" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87881" i_stop="87787" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87786" g_stop="87673" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="296" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87672" i_stop="87548" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87547" g_stop="87442" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="402" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87441" i_stop="85751" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85750" g_stop="85636" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="517" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85635" i_stop="85555" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85554" g_stop="85345" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="727" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85344" i_stop="85219" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85218" g_stop="84909" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="1037" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84908" i_stop="84457" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84456" g_stop="84333" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1161" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84332" i_stop="83475" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83474" g_stop="83371" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1265" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="83370" i_stop="83254" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83253" g_stop="83185" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1266" r_stop="1334" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="83184" i_stop="82317" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="82316" g_stop="82242" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1335" r_stop="1409" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="82241" i_stop="82141" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="82140" g_stop="81798" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1752" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U576036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88063" e_stop="87882"/>
          <exon e_start="87786" e_stop="87673"/>
          <exon e_start="87547" e_stop="87442"/>
          <exon e_start="85750" e_stop="85636"/>
          <exon e_start="85554" e_stop="85345"/>
          <exon e_start="85218" e_stop="84909"/>
          <exon e_start="84456" e_stop="84333"/>
          <exon e_start="83474" e_stop="83371"/>
          <exon e_start="83253" e_stop="83185"/>
          <exon e_start="82316" e_stop="82242"/>
          <exon e_start="82140" e_stop="81798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAAC</genome_strand>
        <mrna_strand>GCCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAAAAAGAGGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGAGCATTAATGTTTCAGTGTCAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588649" ref_strand="+" ref_description="SGN-U588649 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354849|emb|CAO48195.1| (e_value=2e-78) unnamed; (*ATH) AT1G11000.1 (e_value=7e-56)  Symbol: None | seven transmembrane MLO family protein / MLO-like protein 4 (MLO4), identical to membrane protein Mlo4 (Arabidopsis thaliana) gi:14091578:gb:AAK53797; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 (Hordeum vulgare)(Barley)... ; (*SWP) sp|O23693|MLO4_ARATH (e_value=6e-55) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4; ">
      <seq>gcataagtgttccactatggattttcgtcatagtttgtgtatttttaagctttcatggcacaaatatctacttttggatctccttctttccagctatcttaatccttttggttggtaccaagcttcatcgcgtggtggtcaagctggcagttgaaatcattgacagtagtccattggaaggatttcatcagttcaaccttagagatgagctcttctggtttgggaagcctagatttctgctgcggataatacaatttgtatcattccagaatgcatttgagatggcaacatacatatggtcactgtgggaaattaagggatcttcatgtttcacagacaatcacacatttcttgtgattcgcttgtcatttggggttgtttctcaattctggtgtagctttgtcacatttccgctctatgttattgttgctcagatgggttcgagatacaagaagaccattgtttcagagaatgttaggacttcgctacatggatggcgacacaaggtgaaaactagactagaaggttctgtcgtttctccagaaacattattagcaaccacatcattagactccatggcggaggatgaggtagatcaaattcatagcgttgctactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="92443" stop="90202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92148" g_stop="92092" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92091" i_stop="92010" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92009" g_stop="91969" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="98" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91968" i_stop="91873" i_length="96">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91872" g_stop="91702" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="269" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91701" i_stop="91570" i_length="132">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91569" g_stop="91534" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="305" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91533" i_stop="90992" i_length="542">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90991" g_stop="90924" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90923" i_stop="90840" i_length="84">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90839" g_stop="90779" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="434" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90778" i_stop="90688" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90687" g_stop="90502" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="620" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U588649" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92148" e_stop="92092"/>
          <exon e_start="92009" e_stop="91969"/>
          <exon e_start="91872" e_stop="91702"/>
          <exon e_start="91569" e_stop="91534"/>
          <exon e_start="90991" e_stop="90924"/>
          <exon e_start="90839" e_stop="90779"/>
          <exon e_start="90687" e_stop="90502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGTGTTCCACTATGGATTTTCGTCATAGTTTGTGTATTTTTAAGCTTTCATGGTAACTTTTATCTACTAGATATTATCAGGAATTTCTGCCTCGGAATGCTTTTTTCAGTACAATTTTAATGATCATTGTCCAGGCACAAATATCTACTTTTGGATCTCCTTCTTTCCAGCTATCGTAAGTCCTTGTTATTTGCTGTTCCATTTTTCATTTTGCTTCTGAAGAATAATTTGTTCTCATATTTCTGACTTTGTCAAAAATTGTTATTGGAAGTTAATCCTTTTGGTTGGTACCAAGCTTCATCGCGTGGTGGTCAAGCTGGCAGTTGAAATCATTGACAGTAGTCCATTGGAAGGATTTCATCAGTTCAACCTTAGAGATGAGCTCTTCTGGTTTGGGAAGCCTAGATTTCTGCTGCGGATAATACAATTTGTATCATTCCAGGTATGACCAATAACATCTTTTTATCCTCGAATCCAAATGGTAACAAGAAGAATATTACAACTAATTTTTAGCTCAATGATATAGCGTCCTTGGATATGCTTTACTGATTGCTCTTCTTTCAATCATATGCAGAATGCATTTGAGATGGCAACATACATATGGTCACTGGTAAGAACTTGAGAAACTAGTGTTCTGATAGAAGTTTTGCTTTACTGTAAATTAATTCTTCACCCAATACATCCCTTCTGTTAGTCGGTAGATGCAAGTTTCAAACATTGATTATTCACATACTCTCCATTTTCTCTGCACCCTTTTGTGATCAAAGCAAGGGACATAGATTCTTCTGCCTAGTGTTTTTCTCGTTTGACGCTCTTGATTATTTTGCCTTTTTGGGAGCCTCTACAATATAACTTGACCAAAATTTTCAACTGGAGAAGCAATTAGTTTTGGTTGGAAACAGAAATTGTACAACTTTAAAGAACATATATATAACTTTTCAACTCTTATAACAAACTGCAAAGTACTATTGAACTATGGGCTAAACAACACAGAGAGTTAAACAGACAATGTTTTCATATGTAGTTTGTGTCTGTTTTATGTTTATACCTAATCCTTAGGCGAGGCAACACAGACATTCGTGTCACTGCATGAATACAAATTTTTTCCATATGTACATGGGGATGACAACTAATTTCCTTTTCTTGGTGCAGTGGGAAATTAAGGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGGGTAACTATCTTGTGTCTCACTTCCTTGTTAACTTGTTTCTGAATACACTGATTTTCGCATGATCCTTGTGACTTGTTGCTGCAGGGTTGTTTCTCAATTCTGGTGTAGCTTTGTCACATTTCCGCTCTATGTTATTGTTGCTCAGGTAACTAACAAACACAATGTAATCTCTTTTTTTTGTCCTTAGTAATCATTCTACACATTTTATGTCAAGTCAGTGATCCATGTTTGAGCAGATGGGTTCGAGATACAAGAAGACCATTGTTTCAGAGAATGTTAGGACTTCGCTACATGGATGGCGACACAAGGTGAAAACTAGACTAGAAGGTTCTGTCGTTTCTCCAGAAACATTATTAGCAACCACATCATTAGACTCCATGGCGGAGGATGAGGTAGATCAAATTCATAGCGTTGCTACTATC</genome_strand>
        <mrna_strand>GCATAAGTGTTCCACTATGGATTTTCGTCATAGTTTGTGTATTTTTAAGCTTTCATG..................................................................................GCACAAATATCTACTTTTGGATCTCCTTCTTTCCAGCTATC................................................................................................TTAATCCTTTTGGTTGGTACCAAGCTTCATCGCGTGGTGGTCAAGCTGGCAGTTGAAATCATTGACAGTAGTCCATTGGAAGGATTTCATCAGTTCAACCTTAGAGATGAGCTCTTCTGGTTTGGGAAGCCTAGATTTCTGCTGCGGATAATACAATTTGTATCATTCCAG....................................................................................................................................AATGCATTTGAGATGGCAACATACATATGGTCACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATTAAGGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGG....................................................................................GGTTGTTTCTCAATTCTGGTGTAGCTTTGTCACATTTCCGCTCTATGTTATTGTTGCTCAG...........................................................................................ATGGGTTCGAGATACAAGAAGACCATTGTTTCAGAGAATGTTAGGACTTCGCTACATGGATGGCGACACAAGGTGAAAACTAGACTAGAAGGTTCTGTCGTTTCTCCAGAAACATTATTAGCAACCACATCATTAGACTCCATGGCGGAGGATGAGGTAGATCAAATTCATAGCGTTGCTACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564293" ref_strand="+" ref_description="SGN-U564293 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gcctcgtgccgctttttatcctcgaatccaaatggtaacaagaagaatattacaactaatttttagctcaatgatatagcgtccttggatatgctttactgattgctcttctttcaatcatatgcagaatgcatttgagatggcaacatacatatggtcactggtaagaacttgagaaactagtgttctgatagaagttttgctttactgtaaattaattcttcacccaatacatcccttctgttagtcggtagatgcaagtttcaaacattgattattcacatactctccattttctctgcacccttttgtgatcaaagcaagggacatagattcttctgcctagtgtttttctcgtttgacgctcttgattattttgcctttttgggagcctctacaatataacttgaccaaaattttcaactggagaagcaattagttttggttggaaacagaaattgtacaactttaaagaacatatatataacttttcaactcttataacaaactgcaaagtactattgaactatgggctaaacaacacagagagttaaacagacaatgttttcatatgtagtttgtgtctgttttatgtttatacctaatccttaggcgaggcaacacagacattcgtgtcactgcatgaatacaaattttttccatatgtacatggggatgacaactaatttccttttcttggtgcagtgggaaattaanggatcttcatgtttcacagacaatcacacatttcttgtgattcgcttgtcatttgggtaactatcttgtgtctcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="91985" stop="90600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91696" g_stop="90900" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U564293" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91696" e_stop="90900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATAACATCTTTTTATCCTCGAATCCAAATGGTAACAAGAAGAATATTACAACTAATTTTTAGCTCAATGATATAGCGTCCTTGGATATGCTTTACTGATTGCTCTTCTTTCAATCATATGCAGAATGCATTTGAGATGGCAACATACATATGGTCACTGGTAAGAACTTGAGAAACTAGTGTTCTGATAGAAGTTTTGCTTTACTGTAAATTAATTCTTCACCCAATACATCCCTTCTGTTAGTCGGTAGATGCAAGTTTCAAACATTGATTATTCACATACTCTCCATTTTCTCTGCACCCTTTTGTGATCAAAGCAAGGGACATAGATTCTTCTGCCTAGTGTTTTTCTCGTTTGACGCTCTTGATTATTTTGCCTTTTTGGGAGCCTCTACAATATAACTTGACCAAAATTTTCAACTGGAGAAGCAATTAGTTTTGGTTGGAAACAGAAATTGTACAACTTTAAAGAACATATATATAACTTTTCAACTCTTATAACAAACTGCAAAGTACTATTGAACTATGGGCTAAACAACACAGAGAGTTAAACAGACAATGTTTTCATATGTAGTTTGTGTCTGTTTTATGTTTATACCTAATCCTTAGGCGAGGCAACACAGACATTCGTGTCACTGCATGAATACAAATTTTTTCCATATGTACATGGGGATGACAACTAATTTCCTTTTCTTGGTGCAGTGGGAAATTAAGGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGGGTAACTATCTTGTGTCTCACTTCC</genome_strand>
        <mrna_strand>GCCTCGTGCCGCTTTTTATCCTCGAATCCAAATGGTAACAAGAAGAATATTACAACTAATTTTTAGCTCAATGATATAGCGTCCTTGGATATGCTTTACTGATTGCTCTTCTTTCAATCATATGCAGAATGCATTTGAGATGGCAACATACATATGGTCACTGGTAAGAACTTGAGAAACTAGTGTTCTGATAGAAGTTTTGCTTTACTGTAAATTAATTCTTCACCCAATACATCCCTTCTGTTAGTCGGTAGATGCAAGTTTCAAACATTGATTATTCACATACTCTCCATTTTCTCTGCACCCTTTTGTGATCAAAGCAAGGGACATAGATTCTTCTGCCTAGTGTTTTTCTCGTTTGACGCTCTTGATTATTTTGCCTTTTTGGGAGCCTCTACAATATAACTTGACCAAAATTTTCAACTGGAGAAGCAATTAGTTTTGGTTGGAAACAGAAATTGTACAACTTTAAAGAACATATATATAACTTTTCAACTCTTATAACAAACTGCAAAGTACTATTGAACTATGGGCTAAACAACACAGAGAGTTAAACAGACAATGTTTTCATATGTAGTTTGTGTCTGTTTTATGTTTATACCTAATCCTTAGGCGAGGCAACACAGACATTCGTGTCACTGCATGAATACAAATTTTTTCCATATGTACATGGGGATGACAACTAATTTCCTTTTCTTGGTGCAGTGGGAAATTAANGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGGGTAACTATCTTGTGTCTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597937" ref_strand="+" ref_description="SGN-U597937 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354850|emb|CAO48196.1| (e_value=1e-41) unnamed; (*ATH) AT5G66170.2 (e_value=4e-33)  Symbol: None | similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:At2g17850.1); similar to A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana (GB:1TQ1); contains InterPro domain Rhodanes... ; (*SWP) sp|P27626|DIN1_RAPSA (e_value=2e-24) Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1; ">
      <seq>ctaaaacgcacgaaacatagtgccgtaaacaacagacggcaaaatcaaaatccactggcttctctgttccagatgccaattaattttcatcctcaaaacaatcgaaaacgccaatagattcaacagcatttactgaagtcaaagtttctcttttgaaaaaaaaatcttgtataaaagtacaacttccatttattgtcatggcaacaagtcaacttggctcaggagcagaggttgttacagtagatgttcatgcagctcgtcaactcatccaatctggataccgttatgttgatgttcggacagaanaagaatataagaaagggcatgtacacaactctttgaatattccctatatgtttaatactccacaaggtagggtgaagaatccaaaatttatggagcaggtatcttcagcgtgcgacaaagaagaaaaactaattgtgggatgtcaaagtggtgtgaggtccctgtatgctactactgatcttgttaatgctgaattcaagcacgcgagcaacatgggaggtgggtatctggcttgggtggagaatggatttgctgtaaacaaaccacaagatgagctttgatcaccttaattgcagcagttttgctggagatcaactgtaaacaaattaaccacctaccaataaattgntcattanaatcaagcatgtattttctctatttgtccacccacgtgaggngaatccacgggnnca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="100604" stop="98846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100304" g_stop="100088" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100087" i_stop="99984" i_length="104">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99983" g_stop="99903" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="298" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99902" i_stop="99819" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99818" g_stop="99745" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="372" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99744" i_stop="99670" i_length="75">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99669" g_stop="99599" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="443" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99598" i_stop="99520" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99519" g_stop="99466" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="497" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99465" i_stop="99368" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99367" g_stop="99146" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="719" r_length="222" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U597937" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100304" e_stop="100088"/>
          <exon e_start="99983" e_stop="99903"/>
          <exon e_start="99818" e_stop="99745"/>
          <exon e_start="99669" e_stop="99599"/>
          <exon e_start="99519" e_stop="99466"/>
          <exon e_start="99367" e_stop="99146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACGCACGAAACATAGTGCCGTAAACAACAGACGGCAAAATCAAAATCCACTGGCTTCTCTGTTCCAGATGCCAATTAATTTTCATCCTCAAAACAATCGAAAACGCCAATAGATTCAACAGCATTTACTGAAGTCAAAGTTTCTCTTTTGAAAAAAAAATCTTGTATAAAAGTACAACTTCCATTTATTGTCATGGCAACAAGTCAACTTGGGTACAATAGAACAAAATTCTTTATATTCACAATTTGTTACTTCAATTAATTATGGGTAATGGTATTATGTCTCTTCTTTTTGTTGTTCTGCTTCTGTTTTGTAGCTCAGGAGCAGAGGTTGTTACAGTAGATGTTCATGCAGCTCGTCAACTCATCCAATCTGGATACCGTTATGTTGATGTTCGGTAAAAATATTAACGATTAATATTTTTTCTTCAAATATGAAAGTTGAAATCTGATCTGATTTTCATTCAATTCATATTGAACAGGACAGAAGAAGAATATAAGAAAGGGCATGTACACAACTCTTTGAATATTCCCTATATGTTTAATACTCCACAAGGTCTCTCCTCTTTCTTTTGTGTTTGTATCTTTATTTCCAAATTAGGTAAAATGAATGATATTTTGGTGATTTTAGGTAGGGTGAAGAATCCAAAATTTATGGAGCAGGTATCTTCAGCGTGCGACAAAGAAGAAAAACTAATTGTGGTAATACATCTAATTATAATTGTATTGTTTATTTCCCAAGATAAATGTTACGTATGTAATTTGATGGGTAATCATTCAGGGATGTCAAAGTGGTGTGAGGTCCCTGTATGCTACTACTGATCTTGTTAATGCTGTAAGTTGAATTGTCTCTCCTTTTTTTTCTTTTCTATCTGGTTATACAATTATGTGATTTTTGGTAAAATAAACAATATGATATGATGAAATTGGTAGGAATTCAAGCACGCGAGCAACATGGGAGGTGGGTATCTGGCTTGGGTGGAGAATGGATTTGCTGTAAACAAACCACAAGATGAGCTTTGATCACCTTAATTGCAGCAGTTTTGCTGGAGATCAACTGTAAACAAATTAACCACCTACCAATAAATTGTTCATTAGAATCAAGCATGTATTTTCTCTATTTGTCCACCCACGTGAGGCGAATCCACGGGATCA</genome_strand>
        <mrna_strand>CTAAAACGCACGAAACATAGTGCCGTAAACAACAGACGGCAAAATCAAAATCCACTGGCTTCTCTGTTCCAGATGCCAATTAATTTTCATCCTCAAAACAATCGAAAACGCCAATAGATTCAACAGCATTTACTGAAGTCAAAGTTTCTCTTTTGAAAAAAAAATCTTGTATAAAAGTACAACTTCCATTTATTGTCATGGCAACAAGTCAACTTGG........................................................................................................CTCAGGAGCAGAGGTTGTTACAGTAGATGTTCATGCAGCTCGTCAACTCATCCAATCTGGATACCGTTATGTTGATGTTCG....................................................................................GACAGAANAAGAATATAAGAAAGGGCATGTACACAACTCTTTGAATATTCCCTATATGTTTAATACTCCACAAG...........................................................................GTAGGGTGAAGAATCCAAAATTTATGGAGCAGGTATCTTCAGCGTGCGACAAAGAAGAAAAACTAATTGTG...............................................................................GGATGTCAAAGTGGTGTGAGGTCCCTGTATGCTACTACTGATCTTGTTAATGCT..................................................................................................GAATTCAAGCACGCGAGCAACATGGGAGGTGGGTATCTGGCTTGGGTGGAGAATGGATTTGCTGTAAACAAACCACAAGATGAGCTTTGATCACCTTAATTGCAGCAGTTTTGCTGGAGATCAACTGTAAACAAATTAACCACCTACCAATAAATTGNTCATTANAATCAAGCATGTATTTTCTCTATTTGTCCACCCACGTGAGGNGAATCCACGGGNNCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586312" ref_strand="+" ref_description="SGN-U586312 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354855|emb|CAO48201.1| (e_value=2e-55) unnamed; (*ATH) AT4G10770.1 (e_value=1e-48)  Symbol: None | oligopeptide transporter OPT family protein, similar to oligopeptide transporter Opt1p (Candida albicans) GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein | chr4:6628400-6632595 REVERSE | Aliases: T12H20... ; (*SWP) sp|O82485|OPT7_ARATH (e_value=1e-47) Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7; ">
      <seq>ggtcacagagaatttttggaaatcttggctattactcagccataaattggttgtttctgattggcgctatagctcctgtatttgtttggctgttacagaaagctttcccaaaccatcactggattagattgatgtcggtgcctgtggtattagccggaataataaaaataccacctgctactgctgtcaactacaacagttggatcattattgcattagttccaggatttgttgtatatcgatactacaagagttggtggagtcgtcacaatgatgttttatctggggcattagatgccggattaacatttcatgggagtattattggatttgtgcttaagacaggagcatgttagccttcagtggtggggaagtcatacagatacatgccctttggcttcttgtccaactgctaaagggattgtggttgacgggtgtcctatattttaagcagatttgctgcaggatatgtggtgaaggccatggttccatcaacgtagttcgtctggtcatgtctgtccccactgttacaagacttctgtttgtgatcatggctcttgcttgagtcgacaggttcctaggacgtgccattagcagcaagaattggaggactctatgtaaaaagttttatgattagtccaagatgtcacaaacttgtgccagaaaatcatgactcaagaaaatgctcctccacctcctgtgatgaagttagaactgttttgggacacatacaatactgtataatattttcattgttgatgaatctccttcatgtacgcan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="+" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="106962" stop="108340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107262" g_stop="108041" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="+" ref_id="SGN-U586312" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107262" e_stop="108041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACAGAGAATTTTTGGAAATCTTGGCTATTACTCAGCCATAAATTGGTTTTTTCTGATTGGCGCTATAGCTCCTGTATTTGTTTGGCTGTTACAGAAAGCTTTCCCAAACCATCACTGGATTAGATTGATGTCGGTGCCTGTGGTATTAGCCGGAATAATTAAAATACCACCTGCTACTGCTGTCAACTACAACAGTTGGATCATTATTGCATTAGTTTCAGGATTTGTTGTATATCGATACTACAAGAGTTGGTGGAGTCGTCACAATTATGTTTTATCTGGGGCATTAGATGCCGGATTAACA-TTCATGGGAGTATTATTGTATTTGTGCTTAGGACAGGAGCATGTTAGCCTTCAGTGGTGGGGAAGTCATACAGATACATGCCCTTTGGCTTCTTGTCCAACTGCTAAAGGGATTGTGGTTGACGGGTGTCCTATATTTTAAGCAGATTTGCTGCAGGATATGTGGTGAAGGCCATGGTTCCATCAACGTAGTTCGTCTGGTCATGTCTGTCCCCACTGTTACAAGACTTCTGTTTGTGATCATGGCTCTTGCTTGAGTCGACAGGTTCCTAGGACGTGCCATTAGCAGCAAGAATTGGAGGACTCTATGTAAAAAGTTTTATGATTAGTCCAAGATGTCACAAACTTGTGCCAGAAAATCATGACTCAAGAAAATGCTCCTCCACCTCCTGTGATGAAGTTAGAACTGTTTTGGGACACATACAATACTGTATAATATTTTCATTGTTGATGAATCTCCTTCATGTACGCAA</genome_strand>
        <mrna_strand>GGTCACAGAGAATTTTTGGAAATCTTGGCTATTACTCAGCCATAAATTGGTTGTTTCTGATTGGCGCTATAGCTCCTGTATTTGTTTGGCTGTTACAGAAAGCTTTCCCAAACCATCACTGGATTAGATTGATGTCGGTGCCTGTGGTATTAGCCGGAATAATAAAAATACCACCTGCTACTGCTGTCAACTACAACAGTTGGATCATTATTGCATTAGTTCCAGGATTTGTTGTATATCGATACTACAAGAGTTGGTGGAGTCGTCACAATGATGTTTTATCTGGGGCATTAGATGCCGGATTAACATTTCATGGGAGTATTATTGGATTTGTGCTTAAGACAGGAGCATGTTAGCCTTCAGTGGTGGGGAAGTCATACAGATACATGCCCTTTGGCTTCTTGTCCAACTGCTAAAGGGATTGTGGTTGACGGGTGTCCTATATTTTAAGCAGATTTGCTGCAGGATATGTGGTGAAGGCCATGGTTCCATCAACGTAGTTCGTCTGGTCATGTCTGTCCCCACTGTTACAAGACTTCTGTTTGTGATCATGGCTCTTGCTTGAGTCGACAGGTTCCTAGGACGTGCCATTAGCAGCAAGAATTGGAGGACTCTATGTAAAAAGTTTTATGATTAGTCCAAGATGTCACAAACTTGTGCCAGAAAATCATGACTCAAGAAAATGCTCCTCCACCTCCTGTGATGAAGTTAGAACTGTTTTGGGACACATACAATACTGTATAATATTTTCATTGTTGATGAATCTCCTTCATGTACGCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566222" ref_strand="+" ref_description="SGN-U566222 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157352019|emb|CAO43009.1| (e_value=7e-74) unnamed; (*ATH) AT3G04930.1 (e_value=6e-60) | Symbol: None | expressed protein, contains Pfam profile: PF04504 protein of unknown function, DUF573 | chr3:1362920-1364805 FORWARD | Aliases: T9J14.12, T9J14_12; ">
      <seq>aacccagtcttacacgaaacctctccccgctcgtgactccctttactttcggcctaaccacccccttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgaggagattgaagaagaagtatcggacagtgatgagcaagatgggatctggtaaggaatttgtgtttaagagccctcacgatcaagccaccttcgagatctctcgcaagatctggagcaatgccggaccaattgtcgtccgtagcagtggtcccccaccaccaccaccagcagatgatggtggatttgatgatgaggattcacatctcaaccttaaccacgcaaatttcattgatcacacccctaacttcaatcttaatcctaacgggtttgatgttaaaacttctaagtcgaaaaaaaggcctcgaggaggagaagaaaaacccgggtatattcaacagtactatcatcagtcatctggtggaggaacaaatgtcattctccccccaactccggtctcgatggccgccccccaggccacagccacagctacagctgcagcttcaattcctagtttgatcgaggaaactgtgaggagctgtctatcacccattttcaaggaattgtttaacaatttgaatggatctagatattctgggttcggaatgtcattgggtccatcccctttagtaggatttgggaacagtttaatgagctgtgatatcaatatgaagacggatgagaaatggaggaagcaacagattctggaattggaagtttattcaaagagattagagcttgttcaagatcaaataaaggcacagttggaagaactcagatccatgaacagttagaccatggtttacccctttcttatactagtagaattttataataattcttgttgatggatgatattaccagattgcgaaaatagctaattgttctatttacataattgtgaaggctgtttagataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0009K06-Jc39l/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0009K06.2" temp_strand="-" temp_description="C02HBa0009K06.2  AC215352.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0009K06 sequenced_by:kribb upload_account_name:korea">
        <position start="112074" stop="110380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112074" g_stop="110677" g_length="1398"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="1539" r_length="1398" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0009K06.2" gen_strand="-" ref_id="SGN-U566222" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1398</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0009K06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112074" e_stop="110677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATTT</genome_strand>
        <mrna_strand>CTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="588" PGL_stop="1400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="588" e_stop="685"/>
            <exon e_start="777" e_stop="1400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="588" e_stop="685" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="686" i_stop="776" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="777" e_stop="1400" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="588" stop="685"/>
              <exon start="777" stop="1400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565495" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA : GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</gDNA_template>
            <first_frame> K  R  A  L  R  I  A  N  A  A  Q  Q  M  S  N  A  T  R  G  S  S  G  S  V  L  L  F  I  E  I  L  N  K :   Y  L  Y  F  F  E  K  G  V  S  Q  I  N  V  A  S  V  Q  S  L  I  E  L  I  T  T  E  M  Q  S  E  N  T  T  A  D  P  A  A  D  A  F  F  A  S  T  L  R  Y  I  Q  F  Q  K  D  K  G  G  A  V  G  E  K  F  E  S  I  N  S  *  S  N  S  I  S  Q  R  N  Y  V  L  G  V  T  E  A  A  H  F  S  Y  K  V  Q  N  *  F  L  F  N  L  L  *  R  K  M  H  L  T  T  D  *  Q  K  Q  L  K  R  C  I  Y  T  D  H  T  P  T  Q  *  Y  P  N  K  D  C  Y  C  C  N  N  L  L  S  S  Y  D  F  R  V  P  A  T  V  T  F  F  F  F  F  G  G  E  *  V  F  F  *  G  G  R  D  K  E  W  R  S  S  S  L  I  C  S  S  E  M  *  L  *  R  V  L  E  *  F  V  P  Q  F  C  I  T  C  S  V  P  F  N   </first_frame>
            <second_frame>  S  G  P  *  E  L  Q  M  L  L  N  K  C  P  M  Q  P  E  A  A  V  D  L  S  C  S  L  *  K  F  *  T   : S  I  C  I  S  L  R  R  G  S  H  K  L  M  L  P  P  S  R  A  *  L  S  *  S  Q  L  K  C  K  V  K  I  Q  Q  Q  I  L  Q  Q  M  P  S  L  Q  A  P  C  D  T  S  S  S  R  R  I  K  V  V  Q  L  G  R  N  S  S  P  S  T  H  N  Q  I  A  F  L  K  G  I  T  F  L  V  S  Q  K  Q  H  I  F  L  T  K  Y  K  I  D  S  F  S  T  C  S  R  E  K  C  I  *  Q  R  T  S  R  S  S  *  K  D  A  Y  I  L  T  T  P  L  R  S  N  I  L  I  K  I  V  I  V  V  T  I  C  S  P  A  M  T  S  E  C  L  P  L  L  L  F  F  F  F  L  V  E  S  R  F  S  F  E  V  E  E  T  R  S  G  E  V  V  H  *  F  V  V  Q  K  C  D  Y  D  E  Y  *  N  N  L  S  L  S  F  V  *  H  V  L  S  H  L  T  </second_frame>
            <third_frame>   A  G  L  K  N  C  K  C  C  S  T  N  V  Q  C  N  P  R  Q  Q  W  I  C  L  A  L  Y  R  N  S  K  Q  :  V  S  V  F  L  *  E  G  G  L  T  N  *  C  C  L  R  P  E  P  D  *  A  N  H  N  *  N  A  K  *  K  Y  N  S  R  S  C  S  R  C  L  L  C  K  H  L  A  I  H  P  V  P  E  G  *  R  W  C  S  W  G  E  I  R  V  H  Q  L  I  I  K  *  H  F  S  K  E  L  R  S  W  C  H  R  S  S  T  F  F  L  Q  S  T  K  L  I  P  F  Q  L  A  L  E  K  N  A  F  D  N  G  L  A  E  A  A  E  K  M  H  I  Y  *  P  H  P  Y  A  V  I  S  *  *  R  L  L  L  L  *  Q  F  A  L  Q  L  *  L  P  S  A  C  H  C  Y  F  F  F  F  F  W  W  R  V  G  F  L  L  R  W  K  R  Q  G  V  E  K  *  F  I  N  L  *  F  R  N  V  I  M  T  S  T  R  I  I  C  P  S  V  L  Y  N  M  F  C  P  I  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="588" stop="685"/>
                    <exon start="777" stop="987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRALRIANAAQQMSNATRGSSGSVLLFIEILNKYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAADAFFASTLRYIQFQKDKGGAVGEKFESINS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="848" stop="1102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLKCKVKIQQQILQQMPSLQAPCDTSSSRRIKVVQLGRNSSPSTHNQIAFLKGITFLVSQKQHIFLTKYKIDSFSTCSREKCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2818" PGL_stop="1609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2818" e_stop="2702"/>
            <exon e_start="2616" e_stop="2489"/>
            <exon e_start="2419" e_stop="2315"/>
            <exon e_start="2070" e_stop="1609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="2818" e_stop="2702" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="2701" i_stop="2617" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2616" e_stop="2489" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="2488" i_stop="2420" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2419" e_stop="2315" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="2314" i_stop="2071" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2070" e_stop="1609" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2818" stop="2702"/>
              <exon start="2616" stop="2489"/>
              <exon start="2419" stop="2315"/>
              <exon start="2070" stop="1609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2781" stop="2702"/>
              <exon start="2616" stop="2489"/>
              <exon start="2419" stop="2315"/>
              <exon start="2070" stop="1837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGATTCTCTCTCGAGAATTCCTTCTTATAGTTGTTAAACTACACTGTTTCTTCTTTCTGCTTTAAATAATTTCTTGTTGACC</gDNA_template>
            <first_frame> P  T  S  F  L  S  F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E  L  F  S  T  *  *  C  I  *  S  F  P  S  S  H  M  Y  M  I  E  F  G  S  R  I  L  S  R  E  F  L  L  I  V  V  K  L  H  C  F  F  F  L  L  *  I  I  S  C  *   </first_frame>
            <second_frame>  Q  H  L  F  S  P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  C  S  Q  L  D  D  A  Y  N  P  F  L  Q  V  I  C  T  *  L  S  L  E  V  G  F  S  L  E  N  S  F  L  *  L  L  N  Y  T  V  S  S  F  C  F  K  *  F  L  V  D  </second_frame>
            <third_frame>   N  I  F  S  L  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I  V  L  N  L  M  M  H  I  I  L  S  F  K  S  Y  V  H  D  *  V  W  K  *  D  S  L  S  R  I  P  S  Y  S  C  *  T  T  L  F  L  L  S  A  L  N  N  F  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2816" stop="2702"/>
                    <exon start="2616" stop="2489"/>
                    <exon start="2419" stop="2315"/>
                    <exon start="2070" stop="1927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFSLLLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2802" e_stop="2054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="2802" e_stop="2054" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2802" stop="2054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATG</gDNA_template>
            <first_frame> P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R  Y  T  P  I  L  Q  L  V  I  F  P  N  L  K  *  K  I  V  L  K  I  C  Y  T  N  I  F  Q  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R  Y  V  F  N  *  S  L  S  T  K  G  L  L  I  L  S  F  H  I  Y  I  D  R  W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R  C  Y  C  F  L  A  L  P  F  P  Q  *  F  T  I  S  *  I  K  R  D  T  H  *  L  V  F  G  C  W  L  T  *  K  *  N  P  S  R  I  K  D  N  C  N  *  M  F  I  Y  K  R  N  *  L  P  E  N  K  T  S  N  L  Q  K  Q  Y  S  I  N  F  Y  N  L  L  L  V  L  W  M  K  V  L  L  S  I   </first_frame>
            <second_frame>  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A  G  T  H  Q  Y  Y  N  *  *  F  S  Q  I  *  S  R  R  *  F  *  R  F  V  I  L  I  F  F  R  S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q  G  M  F  S  I  D  H  S  P  Q  R  D  C  *  Y  *  V  F  I  Y  I  L  T  G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q  G  A  T  A  F  *  L  F  L  F  L  N  D  L  L  F  H  K  S  K  G  I  H  I  S  *  C  L  V  A  G  *  H  K  N  K  I  Q  V  A  *  R  I  T  V  I  K  C  S  Y  I  N  G  T  S  Y  L  K  I  R  P  V  T  C  K  N  N  I  V  *  T  S  T  I  C  C  W  F  C  G  *  R  F  C  C  P  Y  </second_frame>
            <third_frame>   F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  V  H  T  N  I  T  T  S  N  F  P  K  F  K  V  E  D  S  F  E  D  L  L  Y  *  Y  F  S  G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  V  C  F  Q  L  I  T  L  H  K  G  T  A  D  I  K  F  S  Y  I  Y  *  Q  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  V  L  L  L  S  S  S  S  F  S  S  M  I  Y  Y  F  I  N  Q  K  G  Y  T  L  V  S  V  W  L  L  A  N  I  K  I  K  S  K  S  H  K  G  *  L  *  L  N  V  H  I  *  T  E  L  V  T  *  K  *  D  Q  *  L  A  K  T  I  *  Y  K  L  L  Q  F  A  V  G  F  V  D  E  G  F  A  V  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2422" stop="2186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLLSSSSFSSMIYYFINQKGYTLVSVWLLANIKIKSKSHKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2626" stop="2423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFSGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVCFQLITLHKGTADIKFSYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2802" e_stop="2702"/>
            <exon e_start="2616" e_stop="2489"/>
            <exon e_start="2419" e_stop="2315"/>
            <exon e_start="2039" e_stop="1688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2802" e_stop="2702" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="2701" i_stop="2617" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2616" e_stop="2489" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="2488" i_stop="2420" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2419" e_stop="2315" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="2314" i_stop="2040" i_length="275"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="2039" e_stop="1688" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2802" stop="2702"/>
              <exon start="2616" stop="2489"/>
              <exon start="2419" stop="2315"/>
              <exon start="2039" stop="1688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : ATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATTGTTCTCAACTTGATGATGCATATAATCCTTTCCTTCAAGTCATATGTACATGATTGAGTTTGGAAGTAGGA</gDNA_template>
            <first_frame> P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I  V  L  N  L  M  M  H  I  I  L  S  F  K  S  Y  V  H  D  *  V  W  K  *   </first_frame>
            <second_frame>  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E  L  F  S  T  *  *  C  I  *  S  F  P  S  S  H  M  Y  M  I  E  F  G  S  R  </second_frame>
            <third_frame>   F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  C  S  Q  L  D  D  A  Y  N  P  F  L  Q  V  I  C  T  *  L  S  L  E  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2801" stop="2702"/>
                    <exon start="2616" stop="2489"/>
                    <exon start="2419" stop="2315"/>
                    <exon start="2039" stop="1932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKIQIQMIHWFQKLLICARLIKPSTSQWLVVGLKSMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="7905" PGL_stop="4467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7905" e_stop="7305"/>
            <exon e_start="6541" e_stop="6454"/>
            <exon e_start="6334" e_stop="6225"/>
            <exon e_start="6143" e_stop="6080"/>
            <exon e_start="5296" e_stop="5232"/>
            <exon e_start="5128" e_stop="5063"/>
            <exon e_start="4961" e_stop="4467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7905" e_stop="7305" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7304" i_stop="6542" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6541" e_stop="6454" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6453" i_stop="6335" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6334" e_stop="6225" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="6224" i_stop="6144" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6143" e_stop="6080" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6079" i_stop="5297" i_length="783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5296" e_stop="5232" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5231" i_stop="5129" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5128" e_stop="5063" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="5062" i_stop="4962" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="4961" e_stop="4467" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7905" stop="7305"/>
              <exon start="6541" stop="6454"/>
              <exon start="6334" stop="6225"/>
              <exon start="6143" stop="6080"/>
              <exon start="5296" stop="5232"/>
              <exon start="5128" stop="5063"/>
              <exon start="4961" stop="4467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG : GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG : GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG : TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG : ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG : GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG : AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAATATATTACTATTTTCTTTCAAGT</gDNA_template>
            <first_frame> A  L  F  P  G  *  N  K  G  L  L  I  I  L  T  Q  N  G  K  K  Y  R  D  E  H  P  F  I  F  I  L  S  L  S  T  S  N  F  L  F  L  D  L  G  S  L  N  F  S  S  F  S  L  Y  H  F  S  I  L  I  F  I  H  L  I  P  F  P  L  F  Y  N  S  L  *  T  F  P  F  V  E  L  G  L  G  F  H  Q  E  N  Q  R  K  H  H  W  H  V  S  I  F  F  S  A  G  F  S  S  H  S  E  E  T  T  L  K  G  I  G  E  V  K  R  N  G  N  K  K  L  Q  D  T  T  F  N  L  F  F  S  F  *  I  F  S  G  I  R  S  S  K  E  D  L  K  R  G  G  L  L  L  V  F  *  I  A  G  K  N  E  C  F  K  V  Y  Q  M  C  Y  R  R  R  W  C  R  W  K  D  V  S  L  D  F  L  H  Q  Q  Y  L  P  H   : G  L  C  A  H  R  V  R  Q  F  Q  C  K  C  G  R  Q  W  E  H  C  Q  P  R  V  V  G  Y  C  W :   T  G  G  L  Q  *  V  K  T  S  E  L  P  W  S  *  C  F  H  F  G  I  L  S  H  *  *  S  Q  L  *  K  R  C  Q  E   : V  D  S  *  I  E  A  L  C  P  R  C  S  N  S  A  C  W  N  K  T  R :   S  S  G  *  *  A  I  L  R  R  P  S  W  C  C  A  N  Y  H  C  S   : G  *  R  A  E  E  N  N  W  C  T  C  L  H  *  M  *  F  K  N  T  A   : E  R  E  S  S  L  *  C  R  Y  Q  G  R  A  P  A  T  Q  A  E  E  K  E  G  E  V  P  K  G  M  F  Y  F  V  I  N  S  R  S  N  V  I  T  G  H  T  S  P  C  N  L  S  L  V  F  L  C  H  L  S  R  R  K  *  E  V  H  V  V  C  L  I  *  N  Y  *  *  S  L  E  L  S  G  G  S  V  F  C  V  M  A  V  I  S  N  C  L  V  T  Q  H  L  C  R  R  P  L  Y  C  A  L  S  V  L  I  C  F  I  C  I  L  M  T  *  *  S  S  *  K  K  K  K  R  K  F  S  R  Q  C  *  Q  H  I  S  L  N  I  L  N  V  S  F  *  I  L  H  S  N  I  L  L  F  S  F  K  </first_frame>
            <second_frame>  H  Y  F  P  A  K  T  K  G  Y  L  *  Y  *  L  R  M  E  K  N  T  E  M  N  T  H  L  F  S  S  F  L  S  L  P  Q  T  F  S  F  *  I  W  D  P  *  I  S  P  H  F  L  F  T  I  S  L  F  S  F  S  F  T  L  F  P  F  P  S  S  T  I  L  S  E  L  S  L  S  *  N  *  G  *  G  F  T  K  R  T  K  E  N  T  I  G  M  S  R  F  S  S  L  L  G  F  Q  A  I  L  K  K  R  H  *  K  E  L  E  R  L  K  E  T  E  T  R  S  S  K  I  P  H  L  I  S  F  F  L  F  K  F  F  L  G  S  G  L  L  K  K  I  *  K  E  E  G  Y  C  W  F  S  E  *  P  G  K  M  S  A  S  R  F  I  K  C  V  T  V  G  D  G  A  V  G  K  T  C  L  L  I  S  Y  T  S  N  T  F  P  T  :  D  Y  V  P  T  V  F  D  N  F  S  A  N  V  V  V  N  G  S  T  V  N  L  G  L  W  D  T  A   : G  Q  E  D  Y  N  R  L  R  P  L  S  Y  R  G  A  D  V  F  I  L  A  F  S  L  I  S  K  A  S  Y  E  N  V  A  K  K  :  W  I  P  E  L  K  H  Y  A  P  G  V  P  I  V  L  V  G  T  K  L   : D  L  R  D  D  K  Q  F  F  V  D  H  P  G  A  V  P  I  T  T  A  Q  :  G  E  E  L  R  K  T  I  G  A  P  A  Y  I  E  C  S  S  K  T  Q  Q  :  N  V  K  A  V  F  D  A  A  I  K  V  V  L  Q  P  P  K  Q  K  K  K  K  G  K  S  Q  K  A  C  S  I  L  *  S  T  V  G  P  M  L  L  L  V  T  L  L  L  V  T  S  L  S  Y  S  F  V  I  C  L  G  G  S  R  R  S  M  L  Y  V  S  F  K  I  T  S  D  L  L  N  C  Q  V  A  R  F  S  V  *  W  L  *  S  L  I  V  *  S  H  S  T  F  V  V  G  H  S  I  V  P  S  L  F  *  F  A  L  Y  V  F  *  *  P  D  D  P  V  R  K  K  K  K  G  N  F  P  G  N  V  D  N  I  F  L  *  T  Y  *  T  F  L  F  R  Y  C  I  Q  I  Y  Y  Y  F  L  S  S </second_frame>
            <third_frame>   I  I  S  R  L  K  Q  R  V  T  Y  N  T  D  S  E  W  K  K  I  Q  R  *  T  P  I  Y  F  H  P  F  S  L  Y  L  K  L  S  L  S  R  S  G  I  P  K  F  L  L  I  F  S  L  P  F  L  Y  S  H  F  H  S  P  Y  S  L  S  P  L  L  Q  F  S  L  N  F  P  F  R  R  I  R  V  R  V  S  P  R  E  P  K  K  T  P  L  A  C  L  D  F  L  L  C  W  V  F  K  P  F  *  R  N  D  I  E  R  N  W  R  G  *  K  K  R  K  Q  E  A  P  R  Y  H  I  *  S  L  F  F  F  L  N  F  F  W  D  Q  V  F  *  R  R  S  E  K  R  R  V  I  V  G  F  L  N  S  R  E  K  *  V  L  Q  G  L  S  N  V  L  P  S  A  M  V  P  L  E  R  R  V  S  *  F  L  T  P  A  I  P  S  P  R :   I  M  C  P  P  C  S  T  I  S  V  Q  M  W  S  S  M  G  A  L  S  T  *  G  C  G  I  L  L  :  D  R  R  I  T  I  G  *  D  L  *  V  T  V  E  L  M  F  S  F  W  H  S  L  S  L  V  K  P  A  M  K  T  L  P  R  S :   G  F  L  N  *  S  I  M  P  P  V  F  Q  *  C  L  L  E  Q  N  *  :  I  F  G  M  I  S  N  S  S  *  T  I  L  V  L  C  Q  L  P  L  L  R :   V  K  S  *  G  K  Q  L  V  H  L  L  T  L  N  V  V  Q  K  H  S  R :   T  *  K  Q  S  L  M  P  L  S  R  S  C  S  S  H  P  S  R  R  K  R  R  G  S  P  K  R  H  V  L  F  C  D  Q  Q  *  V  Q  C  Y  Y  W  S  H  F  S  L  *  P  L  S  R  I  P  L  S  F  V  S  E  E  V  G  G  P  C  C  M  S  H  L  K  L  L  V  I  S  *  I  V  R  W  L  G  F  L  C  N  G  C  D  L  *  L  F  S  H  T  A  P  L  S  *  A  T  L  L  C  P  L  C  S  D  L  L  Y  M  Y  F  N  D  L  M  I  Q  L  E  K  K  K  K  E  I  F  P  A  M  L  T  T  Y  F  S  E  H  I  K  R  F  F  L  D  I  A  F  K  Y  I  T  I  F  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7412" stop="7305"/>
                    <exon start="6541" stop="6454"/>
                    <exon start="6334" stop="6225"/>
                    <exon start="6143" stop="6080"/>
                    <exon start="5296" stop="5232"/>
                    <exon start="5128" stop="5063"/>
                    <exon start="4961" stop="4860"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKSQKACSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7834" stop="7574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIYFHPFSLYLKLSLSRSGIPKFLLIFSLPFLYSHFHSPYSLSPLLQFSLNFPFRRIRVRVSPREPKKTPLACLDFLLCWVFKPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14559" PGL_stop="9468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14559" e_stop="14167"/>
            <exon e_start="12175" e_stop="12025"/>
            <exon e_start="11935" e_stop="11768"/>
            <exon e_start="11628" e_stop="11402"/>
            <exon e_start="10947" e_stop="10824"/>
            <exon e_start="10410" e_stop="10348"/>
            <exon e_start="10187" e_stop="10044"/>
            <exon e_start="9961" e_stop="9468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14559" e_stop="14167" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14166" i_stop="12176" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12175" e_stop="12025" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.987">
            <gDNA_intron_boundary i_start="12024" i_stop="11936" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11935" e_stop="11768" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11767" i_stop="11629" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11628" e_stop="11402" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="11401" i_stop="10948" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10947" e_stop="10824" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="10823" i_stop="10411" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10410" e_stop="10348" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10347" i_stop="10188" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10187" e_stop="10044" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10043" i_stop="9962" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="9961" e_stop="9468" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14559" stop="14167"/>
              <exon start="12175" stop="12025"/>
              <exon start="11935" stop="11768"/>
              <exon start="11628" stop="11402"/>
              <exon start="10947" stop="10824"/>
              <exon start="10410" stop="10348"/>
              <exon start="10187" stop="10044"/>
              <exon start="9961" stop="9468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCACCTAACCAGCCATCCACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG : ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG : GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG : GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG : GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT : GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTAT</gDNA_template>
            <first_frame> *  P  P  N  Q  P  S  T  N  R  R  R  H  N  F  S  P  S  L  R  H  T  N  F  H  G  V  V  F  L  P  K  T  G  F  I  F  H  Q  F  D  P  P  T  P  P  I  Q  S  N  S  T  *  H  T  R  S  F  P  C  S  R  L  F  T  F  F  Q  V  W  A  E  V  E  S  H  H  T  I  E  G  V  G  N  F  C  H  E  G  D  G  S  L  V  Q  *  S  E  F  T  G  S  Y  S  C  *  S  G  S  G  Y  S  E  L  P  D  L  Y  W  G  W  T  S  *  S  T  *  P  P  T  K  :  T  Y  S  W  E  E  S  P  C  R  Y  *  H  Y  S  C  P  S  I  S  *  *  N  Y  K  R  F  D  R  W  K  P  *  C  Y  R  R  K  C  H  F  A  R  W  *  A  I  *  K  H   : G  N  S  Y  E  S  L  *  *  S  H  R  I  K  A  G  S  S  L  Y  I  C  R  S  R  W  W  S  Y  R  *  H  V  W  L  C  R  R  F  L  P  S  W  S  *  F  Y  S  D  P  H  H  C  Y  G  T   : G  R  F  F  C  W  R  Q  N  W  N  K  P  S  T  W  *  K  Y  D  W  S  I  L  P  A  T  M  C  A  Y  R  H  G  Y  P  E  Y  F  T  R  *  R  I  S  I  W  P  R  R  S  N  K  I  W  T  H  *  R  C  *  V  F  R  V  A  R  T  E  Y  A  I  I  I  S  K  :  G  P  H  C  I  Y  L  C  Y  Q  A  F  L  *  K  Q  S  R  C  C  F  S  R  *  E  G  K  R  S  E  G  N  F  E  L  G  S  Y  L  W  S   : C  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  *  Y  T  C  *  C  I  F  Y </first_frame>
            <second_frame>  N  H  L  T  S  H  P  Q  I  V  D  A  T  I  F  L  L  P  S  A  T  P  T  F  M  A  S  S  F  C  P  K  Q  A  L  S  F  T  N  S  T  H  Q  L  H  Q  S  R  A  I  P  R  D  I  H  V  R  F  P  A  P  V  S  S  P  S  S  R  C  G  L  K  S  K  A  T  T  R  L  K  V  L  A  T  S  A  T  K  V  M  D  H  S  S  S  K  A  S  S  Q  A  P  T  V  V  E  V  D  L  G  T  R  S  Y  P  I  Y  I  G  A  G  L  L  D  Q  P  D  L  L  Q  R :   H  I  H  G  K  R  V  L  V  V  T  N  T  T  V  A  P  L  Y  L  D  K  T  I  S  A  L  T  D  G  N  P  N  V  T  V  E  S  V  I  L  P  D  G  E  Q  F  K  N  M  :  E  T  L  M  K  V  F  D  K  A  I  E  S  R  L  D  R  R  C  T  F  V  A  L  G  G  G  V  I  G  D  M  C  G  Y  A  A  A  S  Y  L  R  G  V  N  F  I  Q  I  P  T  T  V  M  A  Q  :  V  D  S  S  V  G  G  K  T  G  I  N  H  P  L  G  K  N  M  I  G  A  F  Y  Q  P  Q  C  V  L  I  D  T  D  T  L  N  T  L  P  D  R  E  L  A  S  G  L  A  E  V  I  K  Y  G  L  I  R  D  A  E  F  F  E  W  Q  E  Q  N  M  P  L  L  L  A  R :   D  P  T  A  F  T  Y  A  I  K  R  S  C  E  N  K  A  D  V  V  S  Q  D  E  K  E  S  G  V  R  A  T  L  N  L  G  H  T  F  G  H  :  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  N  I  L  A  D  A  S  S   </second_frame>
            <third_frame>   T  T  *  P  A  I  H  K  S  S  T  P  Q  F  F  S  F  P  P  P  H  Q  L  S  W  R  R  L  S  A  Q  N  R  L  Y  L  S  P  I  R  P  T  N  S  T  N  P  E  Q  F  H  V  T  Y  T  F  V  S  L  L  P  S  L  H  L  L  P  G  V  G  *  S  R  K  P  P  H  D  *  R  C  W  Q  L  L  P  R  R  *  W  I  T  R  P  V  K  R  V  H  R  L  L  Q  L  L  K  W  I  W  V  L  G  A  T  R  F  I  L  G  L  D  F  L  I  N  L  T  S  Y  K   : D  I  F  M  G  R  E  S  L  S  L  L  T  L  Q  L  P  L  Y  I  L  I  K  L  *  A  L  *  Q  M  E  T  L  M  L  P  *  K  V  S  F  C  Q  M  V  S  N  L  K  T  W :   K  L  L  *  K  S  L  I  K  P  S  N  Q  G  W  I  V  V  V  H  L  S  L  S  V  V  E  L  *  V  T  C  V  V  M  P  P  L  P  T  F  V  E  L  I  L  F  R  S  P  P  L  L  W  H  R :   *  I  L  L  L  E  A  K  L  E  *  T  I  H  L  V  K  I  *  L  E  H  S  T  S  H  N  V  C  L  *  T  R  I  P  *  I  L  Y  Q  I  E  N  *  H  L  A  S  Q  K  *  *  N  M  D  S  L  E  M  L  S  F  S  S  G  K  N  R  I  C  H  Y  Y  *  Q   : G  T  P  L  H  L  P  M  L  S  S  V  P  V  K  T  K  Q  M  L  F  L  K  M  R  R  K  A  E  *  G  Q  L  *  T  W  V  I  P  L  V  M :   Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  I  Y  L  L  M  H  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14558" stop="14167"/>
                    <exon start="12175" stop="12025"/>
                    <exon start="11935" stop="11768"/>
                    <exon start="11628" stop="11402"/>
                    <exon start="10947" stop="10824"/>
                    <exon start="10410" stop="10348"/>
                    <exon start="10187" stop="10044"/>
                    <exon start="9961" stop="9830"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHLTSHPQIVDATIFLLPSATPTFMASSFCPKQALSFTNSTHQLHQSRAIPRDIHVRFPAPVSSPSSRCGLKSKATTRLKVLATSATKVMDHSSSKASSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30879" PGL_stop="30558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30879" e_stop="30558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30879" e_stop="30558" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30879" stop="30558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTGTCCAACACCTATTGCCTCTGTACAATTCCAAATTTATGTTCCTCCCCTCATTCTCTCTCTCACACATTTCCCCATTGAAATGGTGATTTTGTTAGTGTTCAAATTGGGGATAGCTGGTGTAAAGATTCAATTTTGATCTATCTGAGTAAGCAAAAAGAAGAGTACTACTTTTCTTTTTTTTTAATTCTTTTTGGTCTGAAATTTGGTGTGTCAGTCTTTGGAGTACAACACACATGGAACATGGTTGATAGTTCAAGAAAGGAGAAAAGGTTAAAGTGAGGCTTGGTTTGCTCTTTTTTGAGTTGTGTTTTTTTTTT</gDNA_template>
            <first_frame> L  C  P  T  P  I  A  S  V  Q  F  Q  I  Y  V  P  P  L  I  L  S  L  T  H  F  P  I  E  M  V  I  L  L  V  F  K  L  G  I  A  G  V  K  I  Q  F  *  S  I  *  V  S  K  K  K  S  T  T  F  L  F  F  *  F  F  L  V  *  N  L  V  C  Q  S  L  E  Y  N  T  H  G  T  W  L  I  V  Q  E  R  R  K  G  *  S  E  A  W  F  A  L  F  *  V  V  F  F  F  </first_frame>
            <second_frame>  S  V  Q  H  L  L  P  L  Y  N  S  K  F  M  F  L  P  S  F  S  L  S  H  I  S  P  L  K  W  *  F  C  *  C  S  N  W  G  *  L  V  *  R  F  N  F  D  L  S  E  *  A  K  R  R  V  L  L  F  F  F  F  N  S  F  W  S  E  I  W  C  V  S  L  W  S  T  T  H  M  E  H  G  *  *  F  K  K  G  E  K  V  K  V  R  L  G  L  L  F  F  E  L  C  F  F  F </second_frame>
            <third_frame>   L  S  N  T  Y  C  L  C  T  I  P  N  L  C  S  S  P  H  S  L  S  H  T  F  P  H  *  N  G  D  F  V  S  V  Q  I  G  D  S  W  C  K  D  S  I  L  I  Y  L  S  K  Q  K  E  E  Y  Y  F  S  F  F  L  I  L  F  G  L  K  F  G  V  S  V  F  G  V  Q  H  T  W  N  M  V  D  S  S  R  K  E  K  R  L  K  *  G  L  V  C  S  F  L  S  C  V  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30796" stop="30596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDFVSVQIGDSWCKDSILIYLSKQKEEYYFSFFLILFGLKFGVSVFGVQHTWNMVDSSRKEKRLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34569" PGL_stop="37333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34569" e_stop="34821"/>
            <exon e_start="34899" e_stop="35023"/>
            <exon e_start="35723" e_stop="35772"/>
            <exon e_start="35925" e_stop="35990"/>
            <exon e_start="36089" e_stop="36137"/>
            <exon e_start="36927" e_stop="37009"/>
            <exon e_start="37109" e_stop="37188"/>
            <exon e_start="37285" e_stop="37333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34569" e_stop="34821" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34822" i_stop="34898" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34899" e_stop="35023" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.861">
            <gDNA_intron_boundary i_start="35024" i_stop="35722" i_length="699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35723" e_stop="35772" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35773" i_stop="35924" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35925" e_stop="35990" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.915">
            <gDNA_intron_boundary i_start="35991" i_stop="36088" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36089" e_stop="36137" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="36138" i_stop="36926" i_length="789"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36927" e_stop="37009" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37010" i_stop="37108" i_length="99"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37109" e_stop="37188" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="37189" i_stop="37284" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37285" e_stop="37333" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34569" stop="34821"/>
              <exon start="34899" stop="35023"/>
              <exon start="35723" stop="35772"/>
              <exon start="35925" stop="35990"/>
              <exon start="36089" stop="36137"/>
              <exon start="36927" stop="37009"/>
              <exon start="37109" stop="37188"/>
              <exon start="37285" stop="37333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTTTATCTTTTCACTCATATAAAAAATTCTCTTTTCATCTGTTCTTCTACATAATATATATAATCCTCCAGTTCTCATAATTCCATTATTAAAAGCTTACGATATCAGTGTCCCGTATTATCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGC : GTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCG : AAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAG : CTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAG : GATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAG : GTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTG : GGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGT : GGAGCTCCTCAAGGAGGATTCAGAAGATCTCTTAAAGCTTCCCACGGAT</gDNA_template>
            <first_frame> H  C  L  S  F  H  S  Y  K  K  F  S  F  H  L  F  F  Y  I  I  Y  I  I  L  Q  F  S  *  F  H  Y  *  K  L  T  I  S  V  S  R  I  I  E  L  Y  Y  Q  W  Q  H  Q  K  *  M  Q  S  I  *  R  K  *  K  R  H  E  E  I  S  E  L  S  S  P  A  K  T  V  L  L  L  C  F  V  *   : R  G  M  M  Q  E  P  M  M  L  Q  L  R  L  E  D  L  M  D  Q  S  G  M  R  *  S  T  S  M  A  L  T  A  A  S  K  S  Q  L  I  F  A  :  K  K  L  R  P  D  I  L  K  L  R  M  L  T  S  I  S :   L  L  E  L  L  L  L  R  *  L  E  V  Q  P  L  I  L  S  L  V  E  R :   I  H  *  V  H  Q  K  R  D  A  F  L  M  L  N  K  :  V  H  R  T  *  G  M  F  F  T  E  W  D  S  L  I  K  I  *  *  H  C  L  E  D  T  H  W :   E  E  H  T  Q  R  D  L  A  L  R  A  L  G  L  K  S  L  *  N  L  T  T  H  T  L   : W  S  S  S  R  R  I  Q  K  I  S  *  S  F  P  R   </first_frame>
            <second_frame>  I  V  Y  L  F  T  H  I  K  N  S  L  F  I  C  S  S  T  *  Y  I  *  S  S  S  S  H  N  S  I  I  K  S  L  R  Y  Q  C  P  V  L  S  N  Y  I  I  N  G  S  T  K  S  R  C  R  V  S  E  G  N  R  K  G  T  K  R  S  P  S  S  H  L  Q  Q  K  L  C  S  Y  Y  A  S  F  S  :  V  A  *  C  R  N  L  *  C  Y  N  *  D  W  R  T  *  W  I  N  Q  E  *  G  R  V  Q  A  W  R  *  Q  R  P  Q  N  R  N  *  S  L  R :   R  N  *  G  Q  T  S  *  N  Y  V  C  *  P  L  S   : A  C  W  S  C  C  C  *  G  N  W  R  S  N  H  *  F  C  P  W  *  K   : G  F  I  K  F  T  R  R  G  T  P  S  *  C  *  T  R :   S  T  A  P  E  G  C  F  L  Q  N  G  T  L  *  *  R  Y  S  S  I  V  W  R  T  H  T   : G  K  S  T  P  R  E  I  W  L  *  G  P  L  D  *  R  A  F  E  I  *  Q  L  I  L  C  :  G  A  P  Q  G  G  F  R  R  S  L  K  A  S  H  G  </second_frame>
            <third_frame>   L  F  I  F  S  L  I  *  K  I  L  F  S  S  V  L  L  H  N  I  Y  N  P  P  V  L  I  I  P  L  L  K  A  Y  D  I  S  V  P  Y  Y  R  I  I  L  S  M  A  A  P  K  V  D  A  E  Y  L  K  E  I  E  K  A  R  R  D  L  R  A  L  I  S  S  K  N  C  A  P  I  M  L  R  L  A :   W  H  D  A  G  T  Y  D  A  T  T  K  T  G  G  P  D  G  S  I  R  N  E  V  E  Y  K  H  G  A  N  S  G  L  K  I  A  I  D  L  C   : E  E  I  K  A  R  H  P  K  I  T  Y  A  D  L  Y  Q  :  L  A  G  V  V  A  V  E  V  T  G  G  P  T  I  D  F  V  P  G  R  K  :  D  S  L  S  S  P  E  E  G  R  L  P  D  A  K  Q   : G  P  P  H  L  R  D  V  F  Y  R  M  G  L  S  D  K  D  I  V  A  L  S  G  G  H  T  L  :  G  R  A  H  P  E  R  S  G  F  E  G  P  W  T  K  E  P  L  K  F  D  N  S  Y  F  V :   E  L  L  K  E  D  S  E  D  L  L  K  L  P  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34595" stop="34821"/>
                    <exon start="34899" stop="35023"/>
                    <exon start="35723" stop="35772"/>
                    <exon start="35925" stop="35990"/>
                    <exon start="36089" stop="36137"/>
                    <exon start="36927" stop="37009"/>
                    <exon start="37109" stop="37188"/>
                    <exon start="37285" stop="37333"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILFSSVLLHNIYNPPVLIIPLLKAYDISVPYYRIILSMAAPKVDAEYLKEIEKARRDLRALISSKNCAPIMLRLAWHDAGTYDATTKTGGPDGSIRNEVEYKHGANSGLKIAIDLCEEIKARHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSLSSPEEGRLPDAKQGPPHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFEGPWTKEPLKFDNSYFVELLKEDSEDLLKLPTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40093" PGL_stop="42378"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40093" e_stop="40380"/>
            <exon e_start="40512" e_stop="40561"/>
            <exon e_start="40676" e_stop="40741"/>
            <exon e_start="41273" e_stop="41321"/>
            <exon e_start="41422" e_stop="41507"/>
            <exon e_start="41608" e_stop="41660"/>
            <exon e_start="41753" e_stop="41846"/>
            <exon e_start="41992" e_stop="42378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.922" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="40093" e_stop="40380" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.922">
            <gDNA_intron_boundary i_start="40381" i_stop="40511" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40512" e_stop="40561" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40562" i_stop="40675" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40676" e_stop="40741" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.953">
            <gDNA_intron_boundary i_start="40742" i_stop="41272" i_length="531"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41273" e_stop="41321" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41322" i_stop="41421" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41422" e_stop="41507" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="41508" i_stop="41607" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41608" e_stop="41660" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41661" i_stop="41752" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41753" e_stop="41846" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.931">
            <gDNA_intron_boundary i_start="41847" i_stop="41991" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41992" e_stop="42378" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40093" stop="40380"/>
              <exon start="40512" stop="40561"/>
              <exon start="40676" stop="40741"/>
              <exon start="41273" stop="41321"/>
              <exon start="41422" stop="41507"/>
              <exon start="41608" stop="41625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40100" stop="40380"/>
              <exon start="40512" stop="40561"/>
              <exon start="40676" stop="40741"/>
              <exon start="41273" stop="41321"/>
              <exon start="41422" stop="41507"/>
              <exon start="41608" stop="41660"/>
              <exon start="41753" stop="41846"/>
              <exon start="41992" stop="42378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG : ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG : CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG : GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAA : GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG : GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT : GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG : CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGC</gDNA_template>
            <first_frame> P  K  G  E  D  H  L  A  *  Y  I  V  S  A  Y  H  S  W  R  H  K  *  M  R  N  I  V  K  R  *  T  K  H  E  *  N  L  E  I  L  *  N  R  R  S  S  V  L  L  I  S  F  V  *  R  T  H  P  N  S  Q  L  P  I  L  I  I  T  M  M  Q  Q  M  L  L  L  L  M  M  P  Q  K  R  K  L  N  L  P  I  I  I  L  S  T  Q  L  :  I  K  S  R  P  I  I  P  *  *  R  I  L  T  S  I  S :   L  L  G  L  L  L  L  K  N  L  V  V  *  T  S  S  L  S  L  V  E  R :   N  H  *  F  Y  Q  M  K  T  A  F  L  M  S  N  K  :  V  Q  K  N  *  E  M  S  S  E  K  *  K  S  L  I  P  S  I  *  *  H  Y  M  E  V  S  N  W :   P  Q  L  E  L  R  L  Q  I  *  N  W  T  T  H  T  L   : W  T  S  S  T  R  R  R  I  *  V  P  R  K  K  L  C  L  M  I  R  N  F  T  T  A  C  N  V  M  Q  R :   I  K  R  I  S  L  R  T  M  K  R  H  T  R  S  S  L  I  L  A  Y  H  I  Q  H  L  S  N  Q  H  *  K  K  V  H  H  K  *  R  R  C  W  R  H  K  R  L  L  E  L  E  L  L  L  Q  P  R  L  *  Y  *  V  S  S  M  *  S  T  G  G  L  L  S  I  R  H  I  S  T  S  N  I  G  G  E  L  N  *  K  K  R  Y  E  Q  L  D  S  M  V  Q  L  *  *  I  L  D  I  S  Y  *  P  Q  L  *  T  F  I  K  I  Q  *  K  N  L  N  S  F  *   </first_frame>
            <second_frame>  Q  K  A  K  I  I  W  H  N  I  *  F  Q  R  T  I  H  G  A  T  S  R  *  E  I  S  *  R  D  K  Q  S  T  N  R  T  W  K  S  C  K  I  E  G  V  Q  C  S  *  F  P  S  F  S  V  R  I  P  I  H  N  C  Q  F  S  S  *  R  *  C  S  K  C  Y  F  Y  S  *  C  H  K  K  E  N  S  I  C  Q  *  *  F  S  Q  H  N  * :   *  N  Q  G  Q  S  S  H  N  N  V  S  *  P  L  S   : A  C  W  D  C  C  C  *  R  T  W  W  Y  R  H  R  V  C  P  W  *  N   : G  I  I  N  F  T  R  *  K  L  P  S  *  C  Q  T  K :   S  R  R  T  K  K  C  L  P  K  S  E  N  L  *  S  Q  A  Y  S  S  I  I  W  R  S  Q  T   : G  H  S  W  S  S  G  Y  K  F  E  I  G  Q  L  I  L  C  :  G  P  P  R  Q  E  E  E  F  K  S  R  G  K  S  S  A  *  *  S  G  I  S  P  L  R  A  M  L  C  N   : A  *  R  G  F  L  *  G  L  *  R  G  T  Q  E  A  R  *  S  W  L  T  I  F  S  I  Y  Q  I  N  I  R  K  K  C  I  T  S  E  E  G  A  G  G  T  K  G  C  W  S  W  S  C  C  C  S  R  G  C  N  I  E  F  L  L  C  N  Q  Q  E  D  C  *  A  F  V  I  S  V  P  V  T  L  V  V  N  S  I  E  R  K  D  M  N  S  W  T  P  W  F  S  Y  N  K  S  W  I  S  P  I  N  L  S  C  K  H  S  S  K  F  N  K  K  T  *  I  P  F  E  </second_frame>
            <third_frame>   K  R  R  R  S  F  G  I  I  Y  S  F  S  V  P  F  M  A  P  Q  V  D  E  K  Y  R  E  E  I  N  K  A  R  I  E  L  G  N  L  V  K  S  K  E  F  S  A  P  D  F  L  R  L  A  Y  A  S  Q  F  T  I  A  N  S  H  H  N  D  D  A  A  N  A  T  S  T  H  D  A  T  K  K  K  T  Q  S  A  N  N  N  S  L  N  T  I   : D  K  I  K  A  N  H  P  I  I  T  Y  P  D  L  Y  Q  :  L  A  G  I  V  A  V  K  E  L  G  G  I  D  I  E  F  V  P  G  R  T  :  E  S  L  I  L  P  D  E  N  C  L  P  D  V  K  Q   : S  P  E  E  L  R  N  V  F  R  K  V  K  I  S  D  P  K  H  I  V  A  L  Y  G  G  L  K  L  :  A  T  A  G  A  Q  A  T  N  L  K  L  D  N  S  Y  F  V :   D  L  L  D  K  K  K  N  L  S  P  A  E  K  A  L  L  D  D  P  E  F  H  H  C  V  Q  C  Y  A  T  :  H  K  E  D  F  F  E  D  Y  E  E  A  H  K  K  L  A  D  L  G  L  P  Y  S  A  F  I  K  S  T  L  E  K  S  A  S  Q  V  K  K  V  L  A  A  Q  K  A  V  G  V  G  V  A  V  A  A  A  V  V  I  L  S  F  F  Y  V  I  N  R  R  T  A  K  H  S  S  Y  Q  Y  Q  *  H  W  W  *  T  Q  L  K  E  K  I  *  T  V  G  L  H  G  S  A  I  I  N  L  G  Y  L  L  L  T  S  V  V  N  I  H  Q  N  S  I  K  K  L  E  F  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40095" stop="40380"/>
                    <exon start="40512" stop="40561"/>
                    <exon start="40676" stop="40741"/>
                    <exon start="41273" stop="41321"/>
                    <exon start="41422" stop="41507"/>
                    <exon start="41608" stop="41660"/>
                    <exon start="41753" stop="41846"/>
                    <exon start="41992" stop="42234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRRSFGIIYSFSVPFMAPQVDEKYREEINKARIELGNLVKSKEFSAPDFLRLAYASQFTIANSHHNDDAANATSTHDATKKKTQSANNNSLNTIDKIKANHPIITYPDLYQLAGIVAVKELGGIDIEFVPGRTESLILPDENCLPDVKQSPEELRNVFRKVKISDPKHIVALYGGLKLATAGAQATNLKLDNSYFVDLLDKKKNLSPAEKALLDDPEFHHCVQCYATHKEDFFEDYEEAHKKLADLGLPYSAFIKSTLEKSASQVKKVLAAQKAVGVGVAVAAAVVILSFFYVINRRTAKHSSYQYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52864" PGL_stop="53941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52864" e_stop="53941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="52864" e_stop="53941" e_length="1078"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52864" stop="53941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAACAGAAGAACATATTATTTATATATATTTAGGAAAGTGATGACAGTTGTGTTTTTCCACTAAGAAAAACTATACTCTTTTTGTGAGTGATGGGGTTCCTATTCCATGTGATTGAATTACCGAAATTGGCATTCTTATGGAGATATCTCAAATTAACGGTGATTGTTTTCGTTACTCGGCTGGGACTCTGCAAACCTCCCCCTGAAGAAGACGATGCCGATTCAAGCTACAACCCCAATAGTTACATCCTTCTATTAGACGGCACTTGCCCTTCCCTTGTCACCGTTCCAATCGAGGTTGCCACCGCCGCCGTCAAGCTCAAAGTCCCCATACTCCTCTACAGCGATTACCTCCTCTGCCGCCGGCGGAAATGCGGTCAATCAGTGAAGGGATGCTCAATCTGCCTTGAATCCATGGAGCTAGATGAGGAGGTCAGAGAGCTCATCACCTGCAGCCATGTCTTCCACAGGGGATGCCTTGATACTTGGGTGAACGATGGACACGTCACTTGCCCCTTGTGCAGATCTATGTTGCTACCCCCTAAGTTGACCTCTTTCCGATCTAATTCTCTAAATCCATCCATTAGTTAGTTTTCGATGCTTATTACAAACTTCTGCTTTAACTATAACAGATGCAAAATTAGTGTTTACAGACATTTCCTGTACAGATTTCCATACTTTTTCTAATAAAAAATCTGATAAACTTATTGAGACTTTTGCATAAGCTATAGAACAGTTACAAAGTTAGTTTCCTGTACAGATTGCAATACTATTGCTTATCAAAGCTCTGCTTTAAGCTCATGAGTTTTCTGAGCTCTTCCATTTTTGTTTGTTTCTTCCGTTTTTGATAGAGAGGTATGATGGTTAGGCTTTTCTTTTAGTCAAGGAAAGAATGGTGGAAACCATCAACTTGCTGTCTATGGGCTTGGTTAAATAAGCATCCATACCAACCTGTAAGCATTTTGCTTCATCTGATGACATTGCATGAGCTGTTAGTGCAACAATGGGAATGTGTGTTCCTGTCCCCATTTCTGATTTTCTAATTGCCTTTGTTGCTTCATAACCATCCATCTTCG</gDNA_template>
            <first_frame> R  N  R  R  T  Y  Y  L  Y  I  F  R  K  V  M  T  V  V  F  F  H  *  E  K  L  Y  S  F  C  E  *  W  G  S  Y  S  M  *  L  N  Y  R  N  W  H  S  Y  G  D  I  S  N  *  R  *  L  F  S  L  L  G  W  D  S  A  N  L  P  L  K  K  T  M  P  I  Q  A  T  T  P  I  V  T  S  F  Y  *  T  A  L  A  L  P  L  S  P  F  Q  S  R  L  P  P  P  P  S  S  S  K  S  P  Y  S  S  T  A  I  T  S  S  A  A  G  G  N  A  V  N  Q  *  R  D  A  Q  S  A  L  N  P  W  S  *  M  R  R  S  E  S  S  S  P  A  A  M  S  S  T  G  D  A  L  I  L  G  *  T  M  D  T  S  L  A  P  C  A  D  L  C  C  Y  P  L  S  *  P  L  S  D  L  I  L  *  I  H  P  L  V  S  F  R  C  L  L  Q  T  S  A  L  T  I  T  D  A  K  L  V  F  T  D  I  S  C  T  D  F  H  T  F  S  N  K  K  S  D  K  L  I  E  T  F  A  *  A  I  E  Q  L  Q  S  *  F  P  V  Q  I  A  I  L  L  L  I  K  A  L  L  *  A  H  E  F  S  E  L  F  H  F  C  L  F  L  P  F  L  I  E  R  Y  D  G  *  A  F  L  L  V  K  E  R  M  V  E  T  I  N  L  L  S  M  G  L  V  K  *  A  S  I  P  T  C  K  H  F  A  S  S  D  D  I  A  *  A  V  S  A  T  M  G  M  C  V  P  V  P  I  S  D  F  L  I  A  F  V  A  S  *  P  S  I  F  </first_frame>
            <second_frame>  G  T  E  E  H  I  I  Y  I  Y  L  G  K  *  *  Q  L  C  F  S  T  K  K  N  Y  T  L  F  V  S  D  G  V  P  I  P  C  D  *  I  T  E  I  G  I  L  M  E  I  S  Q  I  N  G  D  C  F  R  Y  S  A  G  T  L  Q  T  S  P  *  R  R  R  C  R  F  K  L  Q  P  Q  *  L  H  P  S  I  R  R  H  L  P  F  P  C  H  R  S  N  R  G  C  H  R  R  R  Q  A  Q  S  P  H  T  P  L  Q  R  L  P  P  L  P  P  A  E  M  R  S  I  S  E  G  M  L  N  L  P  *  I  H  G  A  R  *  G  G  Q  R  A  H  H  L  Q  P  C  L  P  Q  G  M  P  *  Y  L  G  E  R  W  T  R  H  L  P  L  V  Q  I  Y  V  A  T  P  *  V  D  L  F  P  I  *  F  S  K  S  I  H  *  L  V  F  D  A  Y  Y  K  L  L  L  *  L  *  Q  M  Q  N  *  C  L  Q  T  F  P  V  Q  I  S  I  L  F  L  I  K  N  L  I  N  L  L  R  L  L  H  K  L  *  N  S  Y  K  V  S  F  L  Y  R  L  Q  Y  Y  C  L  S  K  L  C  F  K  L  M  S  F  L  S  S  S  I  F  V  C  F  F  R  F  *  *  R  G  M  M  V  R  L  F  F  *  S  R  K  E  W  W  K  P  S  T  C  C  L  W  A  W  L  N  K  H  P  Y  Q  P  V  S  I  L  L  H  L  M  T  L  H  E  L  L  V  Q  Q  W  E  C  V  F  L  S  P  F  L  I  F  *  L  P  L  L  L  H  N  H  P  S  S </second_frame>
            <third_frame>   E  Q  K  N  I  L  F  I  Y  I  *  E  S  D  D  S  C  V  F  P  L  R  K  T  I  L  F  L  *  V  M  G  F  L  F  H  V  I  E  L  P  K  L  A  F  L  W  R  Y  L  K  L  T  V  I  V  F  V  T  R  L  G  L  C  K  P  P  P  E  E  D  D  A  D  S  S  Y  N  P  N  S  Y  I  L  L  L  D  G  T  C  P  S  L  V  T  V  P  I  E  V  A  T  A  A  V  K  L  K  V  P  I  L  L  Y  S  D  Y  L  L  C  R  R  R  K  C  G  Q  S  V  K  G  C  S  I  C  L  E  S  M  E  L  D  E  E  V  R  E  L  I  T  C  S  H  V  F  H  R  G  C  L  D  T  W  V  N  D  G  H  V  T  C  P  L  C  R  S  M  L  L  P  P  K  L  T  S  F  R  S  N  S  L  N  P  S  I  S  *  F  S  M  L  I  T  N  F  C  F  N  Y  N  R  C  K  I  S  V  Y  R  H  F  L  Y  R  F  P  Y  F  F  *  *  K  I  *  *  T  Y  *  D  F  C  I  S  Y  R  T  V  T  K  L  V  S  C  T  D  C  N  T  I  A  Y  Q  S  S  A  L  S  S  *  V  F  *  A  L  P  F  L  F  V  S  S  V  F  D  R  E  V  *  W  L  G  F  S  F  S  Q  G  K  N  G  G  N  H  Q  L  A  V  Y  G  L  G  *  I  S  I  H  T  N  L  *  A  F  C  F  I  *  *  H  C  M  S  C  *  C  N  N  G  N  V  C  S  C  P  H  F  *  F  S  N  C  L  C  C  F  I  T  I  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52953" stop="53456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFLFHVIELPKLAFLWRYLKLTVIVFVTRLGLCKPPPEEDDADSSYNPNSYILLLDGTCPSLVTVPIEVATAAVKLKVPILLYSDYLLCRRRKCGQSVKGCSICLESMELDEEVRELITCSHVFHRGCLDTWVNDGHVTCPLCRSMLLPPKLTSFRSNSLNPSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57802" PGL_stop="56413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57802" e_stop="57484"/>
            <exon e_start="57392" e_stop="57145"/>
            <exon e_start="57006" e_stop="56847"/>
            <exon e_start="56636" e_stop="56510"/>
            <exon e_start="56420" e_stop="56413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.608" acc_prob="0.867" e_score="0.997"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57802" e_stop="57484" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.608" acc_prob="0.867">
            <gDNA_intron_boundary i_start="57483" i_stop="57393" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57392" e_stop="57145" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57144" i_stop="57007" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57006" e_stop="56847" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.948">
            <gDNA_intron_boundary i_start="56846" i_stop="56637" i_length="210"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56636" e_stop="56510" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56509" i_stop="56421" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56420" e_stop="56413" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57802" stop="57484"/>
              <exon start="57392" stop="57145"/>
              <exon start="57006" stop="56847"/>
              <exon start="56636" stop="56510"/>
              <exon start="56420" stop="56413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATG : GTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAG : TCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAG : GTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTG : ATGATATG</gDNA_template>
            <first_frame> S  T  V  *  C  R  S  I  D  E  R  N  C  *  V  S  *  W  S  H  L  F  N  L  S  R  R  M  V  A  R  Y  I  H  E  *  P  S  L  D  E  Y  Y  K  R  T  K  A  N  D  G  Y  *  F  *  R  P  R  Y  T  I  W  G  *  V  L  T  E  G  L  W  K  E  A  Y  P  K  S  R  S  A  H  R  E  C  *  T  W  E  S  A  L  L  Y  *  L  I  L  P  A  V  K  E  T  S  N   : G  R  S  Y  H  H  S  K  E  I  Y  N  G  K  G  R  *  E  G  Y  Q  D  S  C  N  I  D  L  S  I  N  M  H  P  N  H  W  M  C  L  H  L  R  T  N  R  W  S  V  K  G  N  E  T  *  S  R  A  D  K  P  V  R  C  K  K  E  S  R  G  I  E  Q  L  Q  K  P  I  S  S  E  H  E  :  S  *  I  T  N  T  Y  G  C  S  Y  W  L  A  G  H  S  Y  K  *  W  F  S  Y  K  *  T  V  C  N  Y  Y  S  N  S  *  M  L  N  C  L  A  S  A  S  K  Q  H  F  G  S  Q  *   : G  R  I  W  K  T  S  V  G  R  N  R  I  *  L  G  S  R  T  *  R  T  C  *  Y  V  L  C  P  V  H  *  S  Q  C  *  D  S  S  R  S  L  * :   *  Y  </first_frame>
            <second_frame>  A  L  Y  S  V  G  Q  L  M  K  E  I  V  E  F  H  S  G  H  I  Y  L  T  S  Q  E  G  W  L  L  A  T  S  T  N  S  P  L  L  M  N  T  T  K  G  P  K  L  M  M  A  I  D  S  E  D  P  V  I  R  S  G  A  E  C  L  Q  K  D  Y  G  K  R  L  T  P  S  Q  E  V  H  I  E  N  A  K  L  G  N  Q  L  Y  Y  I  D  S  F  Y  L  Q  L  K  R  L  P  M  :  V  G  V  I  I  I  P  R  K  Y  I  M  G  K  V  D  E  R  A  I  K  T  L  V  I  L  I  S  A  S  I  C  I  L  I  I  G  C  V  C  I  F  V  L  T  D  G  V  S  K  E  M  K  L  R  A  E  L  I  S  Q  L  D  A  R  R  K  A  E  A  S  S  N  Y  K  S  Q  F  L  A  N  M  S :   H  E  L  R  T  P  M  A  A  V  I  G  L  L  D  I  L  I  S  D  G  F  L  T  N  E  Q  Y  A  T  I  T  Q  I  R  K  C  S  T  A  L  L  R  L  L  N  N  I  L  D  L  S  K  :  V  E  S  G  K  L  V  L  E  E  T  E  F  D  L  A  R  E  L  E  G  L  V  D  M  F  S  V  Q  C  I  N  H  N  V  E  T  V  L  D  L  S   : D  D  M </second_frame>
            <third_frame>   H  C  I  V  *  V  N  *  *  K  K  L  L  S  F  I  V  V  T  F  I  *  P  L  K  K  D  G  C  S  L  H  P  R  I  A  L  S  *  *  I  L  Q  K  D  Q  S  *  *  W  L  L  I  L  K  T  P  L  Y  D  L  G  L  S  A  Y  R  R  I  M  E  R  G  L  P  Q  V  K  K  C  T  *  R  M  L  N  L  G  I  S  S  I  I  L  T  H  F  T  C  S  *  R  D  F  Q  W :   *  E  L  S  S  F  Q  G  N  I  *  W  E  R  *  M  R  G  L  S  R  L  L  *  Y  *  S  Q  H  Q  Y  A  S  *  S  L  D  V  S  A  S  S  Y  *  Q  M  E  C  Q  R  K  *  N  L  E  Q  S  *  *  A  S  *  M  Q  E  G  K  Q  R  H  R  A  I  T  K  A  N  F  *  R  T  *   : V  M  N  Y  E  H  L  W  L  Q  L  L  A  C  W  T  F  L  *  V  M  V  F  L  Q  M  N  S  M  Q  L  L  L  K  F  V  N  A  Q  L  P  C  F  G  F  *  T  T  F  W  I  S  V  R :   *  N  L  E  N  *  C  W  K  K  Q  N  L  T  W  L  E  N  L  K  D  L  L  I  C  S  L  S  S  A  L  I  T  M  L  R  Q  F  *  I  S  L  :  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57801" stop="57484"/>
                    <exon start="57392" stop="57145"/>
                    <exon start="57006" stop="56847"/>
                    <exon start="56636" stop="56510"/>
                    <exon start="56420" stop="56413"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALYSVGQLMKEIVEFHSGHIYLTSQEGWLLATSTNSPLLMNTTKGPKLMMAIDSEDPVIRSGAECLQKDYGKRLTPSQEVHIENAKLGNQLYYIDSFYLQLKRLPMVGVIIIPRKYIMGKVDERAIKTLVILISASICILIIGCVCIFVLTDGVSKEMKLRAELISQLDARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDGFLTNEQYATITQIRKCSTALLRLLNNILDLSKVESGKLVLEETEFDLARELEGLVDMFSVQCINHNVETVLDLSDDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="74970" PGL_stop="70974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74970" e_stop="74934"/>
            <exon e_start="74724" e_stop="74505"/>
            <exon e_start="74355" e_stop="74222"/>
            <exon e_start="73663" e_stop="73604"/>
            <exon e_start="73506" e_stop="73447"/>
            <exon e_start="73268" e_stop="73197"/>
            <exon e_start="73074" e_stop="73027"/>
            <exon e_start="72946" e_stop="72827"/>
            <exon e_start="72304" e_stop="72239"/>
            <exon e_start="72156" e_stop="72044"/>
            <exon e_start="71943" e_stop="71859"/>
            <exon e_start="71696" e_stop="71586"/>
            <exon e_start="71453" e_stop="71358"/>
            <exon e_start="71271" e_stop="71224"/>
            <exon e_start="71000" e_stop="70974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.447" acc_prob="0.063" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.728" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.718" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="74970" e_stop="74934" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74933" i_stop="74725" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74724" e_stop="74505" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74504" i_stop="74356" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74355" e_stop="74222" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.447" acc_prob="0.063">
            <gDNA_intron_boundary i_start="74221" i_stop="73664" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73663" e_stop="73604" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73603" i_stop="73507" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73506" e_stop="73447" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73446" i_stop="73269" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73268" e_stop="73197" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73196" i_stop="73075" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73074" e_stop="73027" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.829">
            <gDNA_intron_boundary i_start="73026" i_stop="72947" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72946" e_stop="72827" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72826" i_stop="72305" i_length="522"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72304" e_stop="72239" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.716" acc_prob="0.971">
            <gDNA_intron_boundary i_start="72238" i_stop="72157" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="72156" e_stop="72044" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72043" i_stop="71944" i_length="100"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="71943" e_stop="71859" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.728" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71858" i_stop="71697" i_length="162"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="71696" e_stop="71586" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.907" acc_prob="0.823">
            <gDNA_intron_boundary i_start="71585" i_stop="71454" i_length="132"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="71453" e_stop="71358" e_length="96"/>
          </exon>
          <intron i_serial="13" don_prob="0.718" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71357" i_stop="71272" i_length="86"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="71271" e_stop="71224" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71223" i_stop="71001" i_length="223"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="71000" e_stop="70974" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74970" stop="74934"/>
              <exon start="74724" stop="74505"/>
              <exon start="74355" stop="74222"/>
              <exon start="73663" stop="73604"/>
              <exon start="73506" stop="73447"/>
              <exon start="73268" stop="73197"/>
              <exon start="73074" stop="73027"/>
              <exon start="72946" stop="72827"/>
              <exon start="72304" stop="72239"/>
              <exon start="72156" stop="72044"/>
              <exon start="71943" stop="71859"/>
              <exon start="71696" stop="71586"/>
              <exon start="71453" stop="71358"/>
              <exon start="71271" stop="71224"/>
              <exon start="71000" stop="70974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGGATGGAATCGAACTGATATCATCAAGATCCCG : GTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGG : GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA : GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG : GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA : GTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAG : GTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT : ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA : GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA : GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAG : GCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACG : GTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAG : AATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAG : GAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATACGAG : GCTGGGGAAGACGCTGATTATTCGAAA</gDNA_template>
            <first_frame> S  W  M  E  S  N  *  Y  H  Q  D  P   : G  Q  R  C  *  S  Y  C  K  R  F  H  G  K  S  N  *  G  T  I  Y  R  V  G  *  Y  Y  Q  Q  L  T  K  V  V  C  *  G  I  S  W  N  I  T  Q  T  N  S  Q  I  L  A  L  L  S  S  V  C  V  T  S  W  L  E  Y  L  F  Y  F  *  S  F  T  E  G :   E  L  C  G  L  C  H  K  D  G  H  S  T  E  R  D  C  *  N  W  T  R  E  L  K  G  V  L  F  L  K  Y  W  S  T  *  T  S  I  *  F  Y  N  R   : S  *  Y  T  C  T  T  K  L  S  L  V  C  L  E  F  E  L  G  S   : G  F  W  C  L  H  F  Q  T  R  W  I  T  P  S  H  S  C  E  I   : S  S  N  K  G  N  A  W  T  P  G  R  *  N  P  P  A  I  Q  L  M  D  I  S   : G  N  *  D  L  Q  R  Q  R  T  R  *  T  R  I  H   : Y  W  S  Y  T  D  R  R  *  C  W  K  R  G  H  Y  Q  N  H  S  K  Y  G  H  *  *  S  V  L  H  *  L  *  W  E  G  L  S  *  K   : S  *  K  L  Q  S  *  L  G  P  P  S  Y  S  T  C  C  W  E  L  L  S   : S  K  S  W  N  V  H  N  R  *  Q  I  R  I  V  C  F  G  R  S  C  N  R  W  S  Q  H  K  G  W  R  N  R  T  H  V  A  Q  :  A  L  D  Q  *  *  W  *  R  S  G  *  S  P  *  *  A  C  L  C  G  E  Y  M  *  G  T  H   : G  S  R  E  L  L  S  G  N  S  *  K  Q  *  W  F  T  L  A  Q  N  N  W  P  R  N  L  F  T  S  Y  F  S  F  C  T  *   : E  S  G  R  M  E  S  F  A  Y  D  Q  S  H  H  H  E  S  Q  L  *  F  T  S  *  C  C  T  D  Y  S  P   : G  V  G  *  R  R  C  T  Y  P  F  G  S  S  I  R   : G  W  G  R  R  *  L  F  E  </first_frame>
            <second_frame>  L  G  W  N  R  T  D  I  I  K  I  P  :  V  N  D  A  D  L  I  V  K  D  S  M  G  N  L  I  E  A  Q  F  I  E  L  D  N  I  T  S  N  L  R  K  L  Y  V  K  A  Y  L  G  I  S  P  K  Q  T  P  K  Y  W  L  F  F  R  V  S  V  S  P  L  G  W  N  T  Y  F  I  S  K  A  S  Q  K   : G  S  S  A  G  Y  V  T  K  M  D  I  P  L  N  E  T  V  E  I  G  P  G  N  L  K  A  S  F  S  S  S  T  G  Q  L  K  R  L  Y  N  S  I  T  G  :  V  D  I  P  V  Q  Q  S  Y  L  W  Y  A  S  S  S  N  L  D  Q  :  D  S  G  A  Y  I  F  R  P  D  G  S  P  P  V  I  V  A  R  S  :  V  P  I  K  V  M  R  G  P  L  V  D  E  I  H  Q  Q  F  N  S  W  I  S  Q  :  V  I  R  I  Y  K  D  K  E  H  A  E  L  E  F  T  :  I  G  P  I  P  T  E  D  S  V  G  K  E  V  I  T  K  I  T  A  N  M  A  T  D  K  V  F  Y  T  D  S  N  G  R  D  F  L  K  R  :  V  R  N  Y  R  A  D  W  D  L  Q  V  T  Q  P  V  A  G  N  Y  Y  P  :  V  N  L  G  M  Y  I  T  D  N  K  S  E  L  S  V  L  V  D  R  A  T  G  G  A  S  I  K  D  G  E  I  E  L  M  L  H  R :   R  L  I  N  D  D  G  R  G  V  G  E  A  L  D  E  P  V  C  V  G  S  T  C  E  G  L  T  :  V  R  G  N  Y  Y  L  G  I  H  K  N  S  D  G  S  R  W  R  R  T  T  G  Q  E  I  Y  S  P  L  I  L  A  F  A  H  E  :  N  Q  E  E  W  K  A  S  H  M  T  K  A  T  I  M  N  P  N  Y  S  L  P  P  N  V  A  L  I  T  L  Q  :  E  L  D  N  G  G  V  L  I  R  L  A  H  L  Y  E  :  A  G  E  D  A  D  Y  S  K </second_frame>
            <third_frame>   L  D  G  I  E  L  I  S  S  R  S  R :   S  T  M  L  I  L  L  *  K  I  P  W  E  I  *  L  R  H  N  L  *  S  W  I  I  L  P  A  T  Y  E  S  C  M  L  R  H  I  L  E  Y  H  P  N  K  L  P  N  I  G  S  S  F  E  C  L  C  H  L  L  A  G  I  L  I  L  F  L  K  L  H  R  R  :  G  A  L  R  A  M  S  Q  R  W  T  F  H  *  T  R  L  L  K  L  D  Q  G  T  *  R  R  P  F  P  Q  V  L  V  N  L  N  V  Y  I  I  L  *  Q  E :   L  I  Y  L  Y  N  K  A  I  F  G  M  P  R  V  R  T  W  I  R :   I  L  V  P  T  F  S  D  P  M  D  H  P  Q  S  *  L  R  D  Q :   F  Q  *  R  *  C  V  D  P  W  S  M  K  S  T  S  N  S  T  H  G  Y  L  R :   *  L  G  F  T  K  T  K  N  T  L  N  S  N  S  L :   L  V  L  Y  R  Q  K  I  V  L  E  K  R  S  L  P  K  S  Q  Q  I  W  P  L  I  K  C  S  T  L  T  L  M  G  G  T  F  L  K  E :   L  E  I  T  E  L  I  G  T  S  K  L  L  N  L  L  L  G  T  I  I  Q :   *  I  L  E  C  T  *  Q  I  T  N  Q  N  C  L  F  W  *  I  V  Q  Q  V  E  P  A  *  R  M  E  K  *  N  S  C  C  T   : G  A  *  S  M  M  M  V  E  E  W  V  K  P  L  M  S  L  S  V  W  G  V  H  V  R  D  S  R :   F  E  G  T  T  I  W  E  F  I  K  T  V  M  V  H  V  G  A  E  Q  L  A  K  K  F  I  H  L  L  F  *  L  L  H  M  R :   I  R  K  N  G  K  L  R  I  *  P  K  P  P  S  *  I  P  I  I  V  Y  L  L  M  L  H  *  L  L  S  R :   S  W  I  T  E  V  Y  L  S  V  W  L  I  Y  T  R :   L  G  K  T  L  I  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74969" stop="74934"/>
                    <exon start="74724" stop="74505"/>
                    <exon start="74355" stop="74222"/>
                    <exon start="73663" stop="73604"/>
                    <exon start="73506" stop="73447"/>
                    <exon start="73268" stop="73197"/>
                    <exon start="73074" stop="73027"/>
                    <exon start="72946" stop="72827"/>
                    <exon start="72304" stop="72239"/>
                    <exon start="72156" stop="72044"/>
                    <exon start="71943" stop="71859"/>
                    <exon start="71696" stop="71586"/>
                    <exon start="71453" stop="71358"/>
                    <exon start="71271" stop="71224"/>
                    <exon start="71000" stop="70974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGWNRTDIIKIPVNDADLIVKDSMGNLIEAQFIELDNITSNLRKLYVKAYLGISPKQTPKYWLFFRVSVSPLGWNTYFISKASQKGSSAGYVTKMDIPLNETVEIGPGNLKASFSSSTGQLKRLYNSITGVDIPVQQSYLWYASSSNLDQDSGAYIFRPDGSPPVIVARSVPIKVMRGPLVDEIHQQFNSWISQVIRIYKDKEHAELEFTIGPIPTEDSVGKEVITKITANMATDKVFYTDSNGRDFLKRVRNYRADWDLQVTQPVAGNYYPVNLGMYITDNKSELSVLVDRATGGASIKDGEIELMLHRRLINDDGRGVGEALDEPVCVGSTCEGLTVRGNYYLGIHKNSDGSRWRRTTGQEIYSPLILAFAHENQEEWKASHMTKATIMNPNYSLPPNVALITLQELDNGGVLIRLAHLYEAGEDADYSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78741" PGL_stop="75729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78741" e_stop="78497"/>
            <exon e_start="78416" e_stop="78333"/>
            <exon e_start="78208" e_stop="78120"/>
            <exon e_start="78039" e_stop="77865"/>
            <exon e_start="77714" e_stop="77595"/>
            <exon e_start="77510" e_stop="77421"/>
            <exon e_start="77326" e_stop="77255"/>
            <exon e_start="77136" e_stop="77023"/>
            <exon e_start="76730" e_stop="76630"/>
            <exon e_start="76545" e_stop="76452"/>
            <exon e_start="75753" e_stop="75729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.882" e_score="0.994"/>
          <exon-intron don_prob="0.919" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78741" e_stop="78497" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78496" i_stop="78417" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78416" e_stop="78333" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.805">
            <gDNA_intron_boundary i_start="78332" i_stop="78209" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78208" e_stop="78120" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.816">
            <gDNA_intron_boundary i_start="78119" i_stop="78040" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="78039" e_stop="77865" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="77864" i_stop="77715" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77714" e_stop="77595" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.919" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77594" i_stop="77511" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77510" e_stop="77421" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77420" i_stop="77327" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77326" e_stop="77255" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77254" i_stop="77137" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77136" e_stop="77023" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77022" i_stop="76731" i_length="292"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76730" e_stop="76630" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.907" acc_prob="0.969">
            <gDNA_intron_boundary i_start="76629" i_stop="76546" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76545" e_stop="76452" e_length="94"/>
          </exon>
          <intron i_serial="10" don_prob="0.885" acc_prob="0.993">
            <gDNA_intron_boundary i_start="76451" i_stop="75754" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="0.800">
            <gDNA_exon_boundary e_start="75753" e_stop="75729" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78741" stop="78497"/>
              <exon start="78416" stop="78333"/>
              <exon start="78208" stop="78120"/>
              <exon start="78039" stop="77865"/>
              <exon start="77714" stop="77595"/>
              <exon start="77510" stop="77454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77986" stop="77865"/>
              <exon start="77714" stop="77595"/>
              <exon start="77510" stop="77421"/>
              <exon start="77326" stop="77255"/>
              <exon start="77136" stop="77023"/>
              <exon start="76730" stop="76630"/>
              <exon start="76545" stop="76452"/>
              <exon start="75753" stop="75729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTCTAAGTTGGGTTTGAAAATGAGAACTTCTGTTAATCCAGCTTCAGTTTTTCTGTTCATTTTCTGTAGTACTGTTTGTGTTTATGGGGCAATTGGTGCTAATCGATACCTAAAGTACAATACTGGGGGTAACATTGTTGAAAGCAAACTGAATGTTCATTTGGTTCCTCATTCACACGATGATGTTGGCTGGTTAAAGACTGTTGATCAGTACTATGTTGGATCAAATAATAGCATACAG : GGTGCCTGTGTTGAAAATGTACTGGACTCTGTTGTTATGTCGTTACGTCGTGATCGGAATAGGAAATTTGTCTTTGCTGAAATG : GCATTTTTCCATCGGTGGTGGATTAGGCAAAGCCCGGAAATTCAAGCAGAAGTGAAAAATCTTGTAGCTTCTGGCCAGCTGGAATTCGT : AAATGGTGGTTGGTGTATGCATGATGAAGCGACTACCCATTATATAGATATGATTGATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAG : GTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAG : ATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAG : GATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAA : GCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAG : GACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCC : ATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTG : GCGGCTCGCCAGCTTGAATTCTTAA</gDNA_template>
            <first_frame> S  F  L  S  W  V  *  K  *  E  L  L  L  I  Q  L  Q  F  F  C  S  F  S  V  V  L  F  V  F  M  G  Q  L  V  L  I  D  T  *  S  T  I  L  G  V  T  L  L  K  A  N  *  M  F  I  W  F  L  I  H  T  M  M  L  A  G  *  R  L  L  I  S  T  M  L  D  Q  I  I  A  Y  R :   V  P  V  L  K  M  Y  W  T  L  L  L  C  R  Y  V  V  I  G  I  G  N  L  S  L  L  K  W :   H  F  S  I  G  G  G  L  G  K  A  R  K  F  K  Q  K  *  K  I  L  *  L  L  A  S  W  N  S   : *  M  V  V  G  V  C  M  M  K  R  L  P  I  I  *  I  *  L  I  R  Q  H  *  A  I  N  *  *  R  M  N  S  I  S  L  L  V  Q  D  G  R  S  I  H  L  G  T  L  P  C  K  L  I  F  L  A  Q  R :   *  D  L  I  L  F  T  L  R  A  L  I  I  K  T  E  Q  N  V  R  R  I  K  L  L  R  L  Y  G  V  V  R  E  H  L  V  L  P  P  R :   Y  L  P  T  H  F  L  Y  I  I  V  H  H  M  V  F  I  S  K  W  M  M  L  M  I  L  F  Q  S  R :   M  I  L  L  S  L  T  *  M  S  I  Y  G  L  M  T  S  S  M  L  Q  L  H  K :   Q  T  *  H  V  R  I  T  S  C  G  P  W  E  M  T  S  N  T  N  M  L  N  L  G  S  R  K  W  I  N  *  F  T  M  S  T  R :   T  V  E  *  M  H  C  T  L  L  H  Q  F  M  *  I  Q  N  M  Q  P  M  N  L  G  L  *  K  L  M  I  T  F   : H  M  Q  M  V  K  I  L  I  G  L  V  S  L  P  V  D  Q  L  *  S  D  I  F  V  C  *  V  D  I  I  W :   R  L  A  S  L  N  S  * </first_frame>
            <second_frame>  V  F  *  V  G  F  E  N  E  N  F  C  *  S  S  F  S  F  S  V  H  F  L  *  Y  C  L  C  L  W  G  N  W  C  *  S  I  P  K  V  Q  Y  W  G  *  H  C  *  K  Q  T  E  C  S  F  G  S  S  F  T  R  *  C  W  L  V  K  D  C  *  S  V  L  C  W  I  K  *  *  H  T   : G  C  L  C  *  K  C  T  G  L  C  C  Y  V  V  T  S  *  S  E  *  E  I  C  L  C  *  N   : G  I  F  P  S  V  V  D  *  A  K  P  G  N  S  S  R  S  E  K  S  C  S  F  W  P  A  G  I  R  :  K  W  W  L  V  Y  A  *  *  S  D  Y  P  L  Y  R  Y  D  *  S  D  N  T  R  P  S  T  D  K  E  *  I  Q  Y  H  S  S  C  R  M  A  D  R  S  I  W  A  L  C  R  A  S  L  S  S  W  R  R   : G  R  I  *  F  C  S  L  C  A  H  *  L  S  R  Q  S  K  T  *  G  G  *  S  S  *  G  Y  M  A  W  F  E  N  I  W  F  F  L  P   : D  I  Y  Q  R  I  S  C  T  L  *  S  T  T  W  F  S  F  R  S  G  *  C  *  *  F  C  S  S  P   : G  *  S  S  Y  L  *  H  K  C  R  Y  T  G  *  *  L  H  Q  C  C  N  Y  T   : S  K  R  D  T  Y  E  S  R  H  V  D  H  G  R  *  L  P  I  P  I  C  *  I  L  V  Q  G  N  G  *  I  N  S  L  C  Q  Q   : G  R  S  S  E  C  I  V  L  Y  S  I  N  L  C  R  Y  K  T  C  N  Q  *  I  L  A  S  K  N  *  *  L  L  S  :  I  C  R  W  *  K  F  L  L  D  W  F  L  Y  Q  S  T  S  F  K  A  I  Y  S  Y  A  K  W  I  L  S   : G  G  S  P  A  *  I  L   </second_frame>
            <third_frame>   F  S  K  L  G  L  K  M  R  T  S  V  N  P  A  S  V  F  L  F  I  F  C  S  T  V  C  V  Y  G  A  I  G  A  N  R  Y  L  K  Y  N  T  G  G  N  I  V  E  S  K  L  N  V  H  L  V  P  H  S  H  D  D  V  G  W  L  K  T  V  D  Q  Y  Y  V  G  S  N  N  S  I  Q  :  G  A  C  V  E  N  V  L  D  S  V  V  M  S  L  R  R  D  R  N  R  K  F  V  F  A  E  M  :  A  F  F  H  R  W  W  I  R  Q  S  P  E  I  Q  A  E  V  K  N  L  V  A  S  G  Q  L  E  F  V :   N  G  G  W  C  M  H  D  E  A  T  T  H  Y  I  D  M  I  D  Q  T  T  L  G  H  Q  L  I  K  N  E  F  N  I  T  P  R  A  G  W  Q  I  D  P  F  G  H  S  A  V  Q  A  Y  L  L  G  A  E  :  V  G  F  D  S  V  H  F  A  R  I  D  Y  Q  D  R  A  K  R  K  E  D  K  A  L  E  V  I  W  R  G  S  R  T  F  G  S  S  S  Q  :  I  F  T  N  A  F  P  V  H  Y  S  P  P  H  G  F  H  F  E  V  D  D  A  D  D  F  V  P  V  Q  :  D  D  P  L  I  F  D  I  N  V  D  I  R  V  N  D  F  I  N  A  A  I  T  Q  :  A  N  V  T  R  T  N  H  V  M  W  T  M  G  D  D  F  Q  Y  Q  Y  A  E  S  W  F  K  E  M  D  K  L  I  H  Y  V  N  K  :  D  G  R  V  N  A  L  Y  S  T  P  S  I  Y  V  D  T  K  H  A  T  N  E  S  W  P  L  K  T  D  D  Y  F  P :   Y  A  D  G  E  N  S  Y  W  T  G  F  F  T  S  R  P  A  L  K  R  Y  I  R  M  L  S  G  Y  Y  L  :  A  A  R  Q  L  E  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78739" stop="78497"/>
                    <exon start="78416" stop="78333"/>
                    <exon start="78208" stop="78120"/>
                    <exon start="78039" stop="77865"/>
                    <exon start="77714" stop="77595"/>
                    <exon start="77510" stop="77421"/>
                    <exon start="77326" stop="77255"/>
                    <exon start="77136" stop="77023"/>
                    <exon start="76730" stop="76630"/>
                    <exon start="76545" stop="76452"/>
                    <exon start="75753" stop="75730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKLGLKMRTSVNPASVFLFIFCSTVCVYGAIGANRYLKYNTGGNIVESKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVMSLRRDRNRKFVFAEMAFFHRWWIRQSPEIQAEVKNLVASGQLEFVNGGWCMHDEATTHYIDMIDQTTLGHQLIKNEFNITPRAGWQIDPFGHSAVQAYLLGAEVGFDSVHFARIDYQDRAKRKEDKALEVIWRGSRTFGSSSQIFTNAFPVHYSPPHGFHFEVDDADDFVPVQDDPLIFDINVDIRVNDFINAAITQANVTRTNHVMWTMGDDFQYQYAESWFKEMDKLIHYVNKDGRVNALYSTPSIYVDTKHATNESWPLKTDDYFPYADGENSYWTGFFTSRPALKRYIRMLSGYYLAARQLEFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="88063" PGL_stop="81757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88063" e_stop="87882"/>
            <exon e_start="87786" e_stop="87673"/>
            <exon e_start="87547" e_stop="87442"/>
            <exon e_start="85750" e_stop="85636"/>
            <exon e_start="85554" e_stop="85345"/>
            <exon e_start="85218" e_stop="84909"/>
            <exon e_start="84456" e_stop="84333"/>
            <exon e_start="83474" e_stop="83371"/>
            <exon e_start="83253" e_stop="83185"/>
            <exon e_start="82316" e_stop="82242"/>
            <exon e_start="82140" e_stop="81757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.498" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="88063" e_stop="87882" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87881" i_stop="87787" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87786" e_stop="87673" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="87672" i_stop="87548" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87547" e_stop="87442" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87441" i_stop="85751" i_length="1691"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85750" e_stop="85636" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="85635" i_stop="85555" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85554" e_stop="85345" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="85344" i_stop="85219" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85218" e_stop="84909" e_length="310"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84908" i_stop="84457" i_length="452"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="84456" e_stop="84333" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="84332" i_stop="83475" i_length="858"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83474" e_stop="83371" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83370" i_stop="83254" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83253" e_stop="83185" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.498">
            <gDNA_intron_boundary i_start="83184" i_stop="82317" i_length="868"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="82316" e_stop="82242" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="82241" i_stop="82141" i_length="101"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="82140" e_stop="81757" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88063" stop="87882"/>
              <exon start="87786" stop="87673"/>
              <exon start="87547" stop="87442"/>
              <exon start="85750" stop="85636"/>
              <exon start="85554" stop="85345"/>
              <exon start="85218" stop="84909"/>
              <exon start="84456" stop="84333"/>
              <exon start="83474" stop="83371"/>
              <exon start="83253" stop="83185"/>
              <exon start="82316" stop="82242"/>
              <exon start="82140" stop="81798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83451" stop="83371"/>
              <exon start="83253" stop="83185"/>
              <exon start="82316" stop="82242"/>
              <exon start="82140" stop="81757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594517" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG : GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG : TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG : GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG : CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG : TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG : GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG : CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA : CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG : AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG : GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTG</gDNA_template>
            <first_frame> T  A  T  R  T  I  L  Y  L  L  R  I  V  I  F  P  P  *  S  T  N  S  L  R  K  *  T  Q  I  P  S  N  L  F  F  R  E  N  E  K  I  S  Q  F  N  L  P  I  I  G  F  F  F  N  R  *  P  W  C  S  R :   R  Q  *  S  A  S  T  I  R  S  G  *  E  T  V  I  T  R  P  I  G  S  K  L  *  Q  T  L  L  I  *  S  V  V  P  K  P  S :   L  I  P  R  I  Q  L  E  F  *  R  W  L  V  K  G  F  E  C  *  S  L  R  P  A  I  L  E  K  F  *  L  V  C  T  :  D  W  R  *  A  V  R  *  I  W  L  L  E  S  R  *  P  S  W  L  *  S  T  D  K  T  R  S  N  N  K  G  L  L  F  L  L  A   : A  L  L  N  M  T  R  R  S  W  R  *  L  G  E  S  *  R  R  I  V  *  L  L  M  W  L  I  L  V  K  M  M  K  G  K  L  R  S  *  R  H  *  L  L  R  L  I  P  T  T  V  V  T  S  F  I  F  L  L  V  L  M  L  S  L  M  F  S  *   : V  L  L  F  S  L  V  M  E  K  V  A  V  D  L  L  L  L  L  Q  R  L  L  L  V  E  C  L  D  M  I  L  V  *  I  L  I  W  I  Q  N  L  L  S  H  S  E  F  Q  W  R  K  K  G  R  G  R  K  Q  L  Q  R  R  L  Q  K  K  L  V  T  K  R  K  E  K  I  S  L  L  L  R  M  L  L  W  L  K  M  S  M  Q  E  L  L  S  L  K  A  K  Q  L  T  *  W :   M  M  R  M  P  C  Y  S  K  P  L  Q  C  R  W  M  T  R  P  P  M  L  L  H  E  T  L  T  C  Q  K  R  L  L  K  I  K  T  W  H  L  :  L  F  N  C  L  C  K  T  V  Q  M  I  S  Q  I  R  Q  I  *  V  S  C  W  Q  I  N  H  L  C  H  Q  S  L  P  H :   F  Q  V  L  I  Q  T  I  L  L  S  K  I  C  L  L  P  C  K  G  S  P  R :   R  R  M  R  T  M  I  R  N  R  K  R  T  R  S  K  D  A  Y  N  Y  L  Q  L  R :   *  R  S  S  D  G  N  Q  V  C  C  C  C  *  N  C  S  L  E  W  V  L  L  C  L  W  G  R  A  V  S  H  Y  S  *  G  T  N  *  I  V  F  K  V  L  L  *  D  Y  G  T  F  S  *  I  H  L  W  W  L  P  D  D  L  Y  F  S  L  K  K  S  R  *  G  Q  I  L  A  R  N  K  M  V  F  T  F  S  Y  P  A  F  S  F  V  K  N  Y  A  S  P  K  N  L  *  S  D  N  *  C  F  S  V  K  N  I  *  F  *  P  L  I  N  I  L  C  D  H   </first_frame>
            <second_frame>  P  L  R  E  L  S  C  I  F  F  G  L  *  F  F  L  L  K  A  P  T  P  S  A  S  K  L  K  F  L  P  I  Y  F  S  E  R  T  K  R  F  L  S  L  I  F  Q  L  L  D  F  S  S  I  V  N  H  G  A  R   : G  D  N  D  L  H  R  Q  F  G  V  D  E  K  R  *  L  L  A  Q  *  V  P  S  S  S  R  R  C  *  S  N  L  W  C  Q  N  P   : V  *  S  R  E  Y  S  W  N  F  D  D  G  W  *  R  G  S  S  V  S  H  S  D  Q  R  S  W  K  N  F  S  L  Y  A  R :   I  G  D  R  R  *  D  E  F  G  C  W  N  P  G  S  P  V  G  F  E  A  P  T  K  Q  E  A  T  T  K  D  Y  C  F  C  W  Q  :  P  C  *  I  *  Q  E  G  L  G  D  D  W  E  K  V  E  E  E  *  C  S  S  *  C  G  *  F  W  *  R  *  *  R  E  S  *  E  A  R  G  T  S  C  C  A  *  Y  Q  R  Q  *  S  H  H  S  Y  S  S  W  S  *  C  S  L  *  C  S  H  K  :  Y  S  Y  F  H  W  *  W  R  R  W  Q  W  I  C  C  C  C  C  S  G  C  C  W  W  S  V  W  I  *  F  W  C  R  S  *  F  G  S  R  T  C  S  R  T  P  S  F  N  G  G  R  K  G  E  A  G  S  S  C  K  E  G  C  R  R  S  W  *  P  R  E  R  R  K  S  V  Y  F  S  G  C  C  Y  G  *  K  C  Q  C  R  N  F  *  A  *  K  Q  S  N  *  P  N   : G  *  *  E  C  L  V  T  A  S  P  C  N  V  D  G  *  L  V  L  Q  C  C  Y  T  R  H  *  H  V  R  S  G  F  *  R  S  R  L  G  T  C :   S  S  T  V  C  A  R  Q  Y  K  *  S  V  K  S  D  R  Y  E  *  A  V  G  R  S  I  I  C  V  I  N  P  C  L   : T  S  R  C  *  S  K  R  S  F  C  Q  R  F  A  C  F  H  A  R  A  V  R   : E  E  G  *  G  Q  *  *  G  T  E  R  G  Q  E  V  K  M  R  T  T  I  C  S  S   : G  R  E  V  Q  M  V  I  K  Y  A  A  A  A  E  I  A  H  W  N  G  S  Y  Y  V  C  G  V  G  L  Y  L  I  T  L  E  G  L  I  E  S  S  L  K  Y  Y  Y  K  I  M  E  L  S  V  R  F  I  C  G  G  F  Q  M  I  C  I  S  L  S  K  N  H  V  K  D  R  S  *  Q  E  T  R  W  C  L  P  S  A  T  Q  R  F  L  L  *  K  I  M  R  P  Q  K  I  Y  E  V  T  I  N  V  S  V  S  K  T  F  N  F  S  L  L  L  T  S  F  V  I  T  </second_frame>
            <third_frame>   R  Y  A  N  Y  P  V  S  S  S  D  C  D  F  S  S  L  K  H  Q  L  P  P  Q  V  N  S  N  S  F  Q  F  I  F  Q  R  E  R  K  D  F  S  V  *  S  S  N  Y  W  I  F  L  Q  S  L  T  M  V  L  E  :  A  T  M  I  C  I  D  N  S  E  W  M  R  N  G  D  Y  S  P  N  R  F  Q  A  L  A  D  A  V  N  L  I  C  G  A  K  T  Q  :  S  N  P  E  N  T  V  G  I  L  T  M  A  G  K  G  V  R  V  L  V  T  P  T  S  D  L  G  K  I  L  A  C  M  H   : G  L  E  I  G  G  E  M  N  L  A  A  G  I  Q  V  A  Q  L  A  L  K  H  R  Q  N  K  K  Q  Q  Q  R  I  I  V  F  A  G  S :   P  V  K  Y  D  K  K  V  L  E  M  I  G  R  K  L  K  K  N  S  V  A  L  D  V  V  N  F  G  E  D  D  E  G  K  A  E  K  L  E  A  L  V  A  A  L  N  T  N  D  S  S  H  I  I  H  I  P  P  G  P  N  A  L  S  D  V  L  I  S :   T  P  I  F  T  G  D  G  E  G  G  S  G  F  A  A  A  A  A  A  A  A  A  G  G  V  S  G  Y  D  F  G  V  D  P  N  L  D  P  E  L  A  L  A  L  R  V  S  M  E  E  E  R  A  R  Q  E  A  A  A  K  K  A  A  E  E  A  G  N  Q  E  K  G  E  N  Q  S  T  S  Q  D  V  A  M  A  E  N  V  N  A  G  T  S  E  P  E  S  K  A  T  D  L  M  :  D  D  E  N  A  L  L  Q  Q  A  L  A  M  S  M  D  D  S  S  S  N  V  A  T  R  D  T  D  M  S  E  A  A  S  E  D  Q  D  L  A  L   : A  L  Q  L  S  V  Q  D  S  T  N  D  Q  S  N  P  T  D  M  S  K  L  L  A  D  Q  S  F  V  S  S  I  L  A  S  :  L  P  G  V  D  P  N  D  P  S  V  K  D  L  L  A  S  M  Q  G  Q  S  E  :  K  K  D  E  D  N  D  K  E  Q  K  E  D  K  K  *  R  C  V  Q  L  F  A  A  Q  :  V  E  K  F  R  W  *  S  S  M  L  L  L  L  K  L  L  I  G  M  G  L  I  M  S  V  G  *  G  C  I  S  L  L  L  R  D  *  L  N  R  L  *  S  T  I  I  R  L  W  N  F  Q  L  D  S  F  V  V  A  S  R  *  F  V  F  L  S  Q  K  I  T  L  R  T  D  P  S  K  K  Q  D  G  V  Y  L  Q  L  P  S  V  F  F  C  E  K  L  C  V  P  K  K  S  M  K  *  Q  L  M  F  Q  C  Q  K  H  L  I  L  A  S  Y  *  H  P  L  *  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87929" stop="87882"/>
                    <exon start="87786" stop="87673"/>
                    <exon start="87547" stop="87442"/>
                    <exon start="85750" stop="85636"/>
                    <exon start="85554" stop="85345"/>
                    <exon start="85218" stop="84909"/>
                    <exon start="84456" stop="84333"/>
                    <exon start="83474" stop="83371"/>
                    <exon start="83253" stop="83185"/>
                    <exon start="82316" stop="82269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNYWIFLQSLTMVLEATMICIDNSEWMRNGDYSPNRFQALADAVNLICGAKTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVALDVVNFGEDDEGKAEKLEALVAALNTNDSSHIIHIPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEAGNQEKGENQSTSQDVAMAENVNAGTSEPESKATDLMDDENALLQQALAMSMDDSSSNVATRDTDMSEAASEDQDLALALQLSVQDSTNDQSNPTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQGQSEKKDEDNDKEQKEDKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82293" stop="82242"/>
                    <exon start="82140" stop="81908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTERGQEVKMRTTICSSGREVQMVIKYAAAAEIAHWNGSYYVCGVGLYLITLEGLIESSLKYYYKIMELSVRFICGGFQMICISLSKNHVKDRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92148" PGL_stop="90502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92148" e_stop="92092"/>
            <exon e_start="92009" e_stop="91969"/>
            <exon e_start="91872" e_stop="91702"/>
            <exon e_start="91569" e_stop="91534"/>
            <exon e_start="90991" e_stop="90924"/>
            <exon e_start="90839" e_stop="90779"/>
            <exon e_start="90687" e_stop="90502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.685" e_score="0.930"/>
          <exon-intron don_prob="0.990" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.728" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="92148" e_stop="92092" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.685">
            <gDNA_intron_boundary i_start="92091" i_stop="92010" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92009" e_stop="91969" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.816">
            <gDNA_intron_boundary i_start="91968" i_stop="91873" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91872" e_stop="91702" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91701" i_stop="91570" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91569" e_stop="91534" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="91533" i_stop="90992" i_length="542"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90991" e_stop="90924" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90923" i_stop="90840" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90839" e_stop="90779" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.728">
            <gDNA_intron_boundary i_start="90778" i_stop="90688" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90687" e_stop="90502" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92148" stop="92092"/>
              <exon start="92009" stop="91969"/>
              <exon start="91872" stop="91702"/>
              <exon start="91569" stop="91534"/>
              <exon start="90991" stop="90924"/>
              <exon start="90839" stop="90779"/>
              <exon start="90687" stop="90502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGCAGTGTTCCACTATGGATTTTCGTCATAGTTTGTGTATTTTTAAGCTTTCATG : GCACAAATATCTACTTTTGGATCTCCTTCTTTCCAGCTATC : TTAATCCTTTTGGTTGGTACCAAGCTTCATCGCGTGGTGGTCAAGCTGGCAGTTGAAATCATTGACAGTAGTCCATTGGAAGGATTTCATCAGTTCAACCTTAGAGATGAGCTCTTCTGGTTTGGGAAGCCTAGATTTCTGCTGCGGATAATACAATTTGTATCATTCCAG : AATGCATTTGAGATGGCAACATACATATGGTCACTG : TGGGAAATTAAGGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGG : GGTTGTTTCTCAATTCTGGTGTAGCTTTGTCACATTTCCGCTCTATGTTATTGTTGCTCAG : ATGGGTTCGAGATACAAGAAGACCATTGTTTCAGAGAATGTTAGGACTTCGCTACATGGATGGCGACACAAGGTGAAAACTAGACTAGAAGGTTCTGTCGTTTCTCCAGAAACATTATTAGCAACCACATCATTAGACTCCATGGCGGAGGATGAGGTAGATCAAATTCATAGCGTTGCTACTATC</gDNA_template>
            <first_frame> S  A  V  F  H  Y  G  F  S  S  *  F  V  Y  F  *  A  F  M  :  A  Q  I  S  T  F  G  S  P  S  F  Q  L  S :   *  S  F  W  L  V  P  S  F  I  A  W  W  S  S  W  Q  L  K  S  L  T  V  V  H  W  K  D  F  I  S  S  T  L  E  M  S  S  S  G  L  G  S  L  D  F  C  C  G  *  Y  N  L  Y  H  S  R :   M  H  L  R  W  Q  H  T  Y  G  H  C :   G  K  L  R  D  L  H  V  S  Q  T  I  T  H  F  L  *  F  A  C  H  L   : G  L  F  L  N  S  G  V  A  L  S  H  F  R  S  M  L  L  L  L  R :   W  V  R  D  T  R  R  P  L  F  Q  R  M  L  G  L  R  Y  M  D  G  D  T  R  *  K  L  D  *  K  V  L  S  F  L  Q  K  H  Y  *  Q  P  H  H  *  T  P  W  R  R  M  R  *  I  K  F  I  A  L  L  L   </first_frame>
            <second_frame>  L  Q  C  S  T  M  D  F  R  H  S  L  C  I  F  K  L  S  W :   H  K  Y  L  L  L  D  L  L  L  S  S  Y   : L  N  P  F  G  W  Y  Q  A  S  S  R  G  G  Q  A  G  S  *  N  H  *  Q  *  S  I  G  R  I  S  S  V  Q  P  *  R  *  A  L  L  V  W  E  A  *  I  S  A  A  D  N  T  I  C  I  I  P   : E  C  I  *  D  G  N  I  H  M  V  T   : V  G  N  *  G  I  F  M  F  H  R  Q  S  H  I  S  C  D  S  L  V  I  W  :  G  C  F  S  I  L  V  *  L  C  H  I  S  A  L  C  Y  C  C  S   : D  G  F  E  I  Q  E  D  H  C  F  R  E  C  *  D  F  A  T  W  M  A  T  Q  G  E  N  *  T  R  R  F  C  R  F  S  R  N  I  I  S  N  H  I  I  R  L  H  G  G  G  *  G  R  S  N  S  *  R  C  Y  Y  </second_frame>
            <third_frame>   C  S  V  P  L  W  I  F  V  I  V  C  V  F  L  S  F  H   : G  T  N  I  Y  F  W  I  S  F  F  P  A  I  :  L  I  L  L  V  G  T  K  L  H  R  V  V  V  K  L  A  V  E  I  I  D  S  S  P  L  E  G  F  H  Q  F  N  L  R  D  E  L  F  W  F  G  K  P  R  F  L  L  R  I  I  Q  F  V  S  F  Q  :  N  A  F  E  M  A  T  Y  I  W  S  L  :  W  E  I  K  G  S  S  C  F  T  D  N  H  T  F  L  V  I  R  L  S  F  G :   V  V  S  Q  F  W  C  S  F  V  T  F  P  L  Y  V  I  V  A  Q  :  M  G  S  R  Y  K  K  T  I  V  S  E  N  V  R  T  S  L  H  G  W  R  H  K  V  K  T  R  L  E  G  S  V  V  S  P  E  T  L  L  A  T  T  S  L  D  S  M  A  E  D  E  V  D  Q  I  H  S  V  A  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92146" stop="92092"/>
                    <exon start="92009" stop="91969"/>
                    <exon start="91872" stop="91702"/>
                    <exon start="91569" stop="91534"/>
                    <exon start="90991" stop="90924"/>
                    <exon start="90839" stop="90779"/>
                    <exon start="90687" stop="90502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVPLWIFVIVCVFLSFHGTNIYFWISFFPAILILLVGTKLHRVVVKLAVEIIDSSPLEGFHQFNLRDELFWFGKPRFLLRIIQFVSFQNAFEMATYIWSLWEIKGSSCFTDNHTFLVIRLSFGVVSQFWCSFVTFPLYVIVAQMGSRYKKTIVSENVRTSLHGWRHKVKTRLEGSVVSPETLLATTSLDSMAEDEVDQIHSVATI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91696" e_stop="90900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="91696" e_stop="90900" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91696" stop="90900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATAACATCTTTTTATCCTCGAATCCAAATGGTAACAAGAAGAATATTACAACTAATTTTTAGCTCAATGATATAGCGTCCTTGGATATGCTTTACTGATTGCTCTTCTTTCAATCATATGCAGAATGCATTTGAGATGGCAACATACATATGGTCACTGGTAAGAACTTGAGAAACTAGTGTTCTGATAGAAGTTTTGCTTTACTGTAAATTAATTCTTCACCCAATACATCCCTTCTGTTAGTCGGTAGATGCAAGTTTCAAACATTGATTATTCACATACTCTCCATTTTCTCTGCACCCTTTTGTGATCAAAGCAAGGGACATAGATTCTTCTGCCTAGTGTTTTTCTCGTTTGACGCTCTTGATTATTTTGCCTTTTTGGGAGCCTCTACAATATAACTTGACCAAAATTTTCAACTGGAGAAGCAATTAGTTTTGGTTGGAAACAGAAATTGTACAACTTTAAAGAACATATATATAACTTTTCAACTCTTATAACAAACTGCAAAGTACTATTGAACTATGGGCTAAACAACACAGAGAGTTAAACAGACAATGTTTTCATATGTAGTTTGTGTCTGTTTTATGTTTATACCTAATCCTTAGGCGAGGCAACACAGACATTCGTGTCACTGCATGAATACAAATTTTTTCCATATGTACATGGGGATGACAACTAATTTCCTTTTCTTGGTGCAGTGGGAAATTAAGGGATCTTCATGTTTCACAGACAATCACACATTTCTTGTGATTCGCTTGTCATTTGGGTAACTATCTTGTGTCTCACTTCC</gDNA_template>
            <first_frame> T  N  N  I  F  L  S  S  N  P  N  G  N  K  K  N  I  T  T  N  F  *  L  N  D  I  A  S  L  D  M  L  Y  *  L  L  F  F  Q  S  Y  A  E  C  I  *  D  G  N  I  H  M  V  T  G  K  N  L  R  N  *  C  S  D  R  S  F  A  L  L  *  I  N  S  S  P  N  T  S  L  L  L  V  G  R  C  K  F  Q  T  L  I  I  H  I  L  S  I  F  S  A  P  F  C  D  Q  S  K  G  H  R  F  F  C  L  V  F  F  S  F  D  A  L  D  Y  F  A  F  L  G  A  S  T  I  *  L  D  Q  N  F  Q  L  E  K  Q  L  V  L  V  G  N  R  N  C  T  T  L  K  N  I  Y  I  T  F  Q  L  L  *  Q  T  A  K  Y  Y  *  T  M  G  *  T  T  Q  R  V  K  Q  T  M  F  S  Y  V  V  C  V  C  F  M  F  I  P  N  P  *  A  R  Q  H  R  H  S  C  H  C  M  N  T  N  F  F  H  M  Y  M  G  M  T  T  N  F  L  F  L  V  Q  W  E  I  K  G  S  S  C  F  T  D  N  H  T  F  L  V  I  R  L  S  F  G  *  L  S  C  V  S  L   </first_frame>
            <second_frame>  P  I  T  S  F  Y  P  R  I  Q  M  V  T  R  R  I  L  Q  L  I  F  S  S  M  I  *  R  P  W  I  C  F  T  D  C  S  S  F  N  H  M  Q  N  A  F  E  M  A  T  Y  I  W  S  L  V  R  T  *  E  T  S  V  L  I  E  V  L  L  Y  C  K  L  I  L  H  P  I  H  P  F  C  *  S  V  D  A  S  F  K  H  *  L  F  T  Y  S  P  F  S  L  H  P  F  V  I  K  A  R  D  I  D  S  S  A  *  C  F  S  R  L  T  L  L  I  I  L  P  F  W  E  P  L  Q  Y  N  L  T  K  I  F  N  W  R  S  N  *  F  W  L  E  T  E  I  V  Q  L  *  R  T  Y  I  *  L  F  N  S  Y  N  K  L  Q  S  T  I  E  L  W  A  K  Q  H  R  E  L  N  R  Q  C  F  H  M  *  F  V  S  V  L  C  L  Y  L  I  L  R  R  G  N  T  D  I  R  V  T  A  *  I  Q  I  F  S  I  C  T  W  G  *  Q  L  I  S  F  S  W  C  S  G  K  L  R  D  L  H  V  S  Q  T  I  T  H  F  L  *  F  A  C  H  L  G  N  Y  L  V  S  H  F  </second_frame>
            <third_frame>   Q  *  H  L  F  I  L  E  S  K  W  *  Q  E  E  Y  Y  N  *  F  L  A  Q  *  Y  S  V  L  G  Y  A  L  L  I  A  L  L  S  I  I  C  R  M  H  L  R  W  Q  H  T  Y  G  H  W  *  E  L  E  K  L  V  F  *  *  K  F  C  F  T  V  N  *  F  F  T  Q  Y  I  P  S  V  S  R  *  M  Q  V  S  N  I  D  Y  S  H  T  L  H  F  L  C  T  L  L  *  S  K  Q  G  T  *  I  L  L  P  S  V  F  L  V  *  R  S  *  L  F  C  L  F  G  S  L  Y  N  I  T  *  P  K  F  S  T  G  E  A  I  S  F  G  W  K  Q  K  L  Y  N  F  K  E  H  I  Y  N  F  S  T  L  I  T  N  C  K  V  L  L  N  Y  G  L  N  N  T  E  S  *  T  D  N  V  F  I  C  S  L  C  L  F  Y  V  Y  T  *  S  L  G  E  A  T  Q  T  F  V  S  L  H  E  Y  K  F  F  P  Y  V  H  G  D  D  N  *  F  P  F  L  G  A  V  G  N  *  G  I  F  M  F  H  R  Q  S  H  I  S  C  D  S  L  V  I  W  V  T  I  L  C  L  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0009K06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="100304" PGL_stop="99146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100304" e_stop="100088"/>
            <exon e_start="99983" e_stop="99903"/>
            <exon e_start="99818" e_stop="99745"/>
            <exon e_start="99669" e_stop="99599"/>
            <exon e_start="99519" e_stop="99466"/>
            <exon e_start="99367" e_stop="99146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.639" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100304" e_stop="100088" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.639" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100087" i_stop="99984" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99983" e_stop="99903" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99902" i_stop="99819" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="99818" e_stop="99745" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99744" i_stop="99670" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99669" e_stop="99599" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="99598" i_stop="99520" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99519" e_stop="99466" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99465" i_stop="99368" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="99367" e_stop="99146" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100304" stop="100088"/>
              <exon start="99983" stop="99903"/>
              <exon start="99818" stop="99745"/>
              <exon start="99669" stop="99599"/>
              <exon start="99519" stop="99466"/>
              <exon start="99367" stop="99146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAACGCACGAAACATAGTGCCGTAAACAACAGACGGCAAAATCAAAATCCACTGGCTTCTCTGTTCCAGATGCCAATTAATTTTCATCCTCAAAACAATCGAAAACGCCAATAGATTCAACAGCATTTACTGAAGTCAAAGTTTCTCTTTTGAAAAAAAAATCTTGTATAAAAGTACAACTTCCATTTATTGTCATGGCAACAAGTCAACTTGG : CTCAGGAGCAGAGGTTGTTACAGTAGATGTTCATGCAGCTCGTCAACTCATCCAATCTGGATACCGTTATGTTGATGTTCG : GACAGAAGAAGAATATAAGAAAGGGCATGTACACAACTCTTTGAATATTCCCTATATGTTTAATACTCCACAAG : GTAGGGTGAAGAATCCAAAATTTATGGAGCAGGTATCTTCAGCGTGCGACAAAGAAGAAAAACTAATTGTG : GGATGTCAAAGTGGTGTGAGGTCCCTGTATGCTACTACTGATCTTGTTAATGCT : GAATTCAAGCACGCGAGCAACATGGGAGGTGGGTATCTGGCTTGGGTGGAGAATGGATTTGCTGTAAACAAACCACAAGATGAGCTTTGATCACCTTAATTGCAGCAGTTTTGCTGGAGATCAACTGTAAACAAATTAACCACCTACCAATAAATTGTTCATTAGAATCAAGCATGTATTTTCTCTATTTGTCCACCCACGTGAGGCGAATCCACGGGATCA</gDNA_template>
            <first_frame> L  K  R  T  K  H  S  A  V  N  N  R  R  Q  N  Q  N  P  L  A  S  L  F  Q  M  P  I  N  F  H  P  Q  N  N  R  K  R  Q  *  I  Q  Q  H  L  L  K  S  K  F  L  F  *  K  K  N  L  V  *  K  Y  N  F  H  L  L  S  W  Q  Q  V  N  L   : A  Q  E  Q  R  L  L  Q  *  M  F  M  Q  L  V  N  S  S  N  L  D  T  V  M  L  M  F   : G  Q  K  K  N  I  R  K  G  M  Y  T  T  L  *  I  F  P  I  C  L  I  L  H  K  :  V  G  *  R  I  Q  N  L  W  S  R  Y  L  Q  R  A  T  K  K  K  N  *  L  W :   D  V  K  V  V  *  G  P  C  M  L  L  L  I  L  L  M  L :   N  S  S  T  R  A  T  W  E  V  G  I  W  L  G  W  R  M  D  L  L  *  T  N  H  K  M  S  F  D  H  L  N  C  S  S  F  A  G  D  Q  L  *  T  N  *  P  P  T  N  K  L  F  I  R  I  K  H  V  F  S  L  F  V  H  P  R  E  A  N  P  R  D   </first_frame>
            <second_frame>  *  N  A  R  N  I  V  P  *  T  T  D  G  K  I  K  I  H  W  L  L  C  S  R  C  Q  L  I  F  I  L  K  T  I  E  N  A  N  R  F  N  S  I  Y  *  S  Q  S  F  S  F  E  K  K  I  L  Y  K  S  T  T  S  I  Y  C  H  G  N  K  S  T  W  :  L  R  S  R  G  C  Y  S  R  C  S  C  S  S  S  T  H  P  I  W  I  P  L  C  *  C  S  :  D  R  R  R  I  *  E  R  A  C  T  Q  L  F  E  Y  S  L  Y  V  *  Y  S  T  R :   *  G  E  E  S  K  I  Y  G  A  G  I  F  S  V  R  Q  R  R  K  T  N  C   : G  M  S  K  W  C  E  V  P  V  C  Y  Y  *  S  C  *  C   : *  I  Q  A  R  E  Q  H  G  R  W  V  S  G  L  G  G  E  W  I  C  C  K  Q  T  T  R  *  A  L  I  T  L  I  A  A  V  L  L  E  I  N  C  K  Q  I  N  H  L  P  I  N  C  S  L  E  S  S  M  Y  F  L  Y  L  S  T  H  V  R  R  I  H  G  I  </second_frame>
            <third_frame>   K  T  H  E  T  *  C  R  K  Q  Q  T  A  K  S  K  S  T  G  F  S  V  P  D  A  N  *  F  S  S  S  K  Q  S  K  T  P  I  D  S  T  A  F  T  E  V  K  V  S  L  L  K  K  K  S  C  I  K  V  Q  L  P  F  I  V  M  A  T  S  Q  L  G :   S  G  A  E  V  V  T  V  D  V  H  A  A  R  Q  L  I  Q  S  G  Y  R  Y  V  D  V  R :   T  E  E  E  Y  K  K  G  H  V  H  N  S  L  N  I  P  Y  M  F  N  T  P  Q   : G  R  V  K  N  P  K  F  M  E  Q  V  S  S  A  C  D  K  E  E  K  L  I  V  :  G  C  Q  S  G  V  R  S  L  Y  A  T  T  D  L  V  N  A  :  E  F  K  H  A  S  N  M  G  G  G  Y  L  A  W  V  E  N  G  F  A  V  N  K  P  Q  D  E  L  *  S  P  *  L  Q  Q  F  C  W  R  S  T  V  N  K  L  T  T  Y  Q  *  I  V  H  *  N  Q  A  C  I  F  S  I  C  P  P  T  *  G  E  S  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100221" stop="100088"/>
                    <exon start="99983" stop="99903"/>
                    <exon start="99818" stop="99745"/>
                    <exon start="99669" stop="99599"/>
                    <exon start="99519" stop="99466"/>
                    <exon start="99367" stop="99278"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSSKQSKTPIDSTAFTEVKVSLLKKKSCIKVQLPFIVMATSQLGSGAEVVTVDVHAARQLIQSGYRYVDVRTEEEYKKGHVHNSLNIPYMFNTPQGRVKNPKFMEQVSSACDKEEKLIVGCQSGVRSLYATTDLVNAEFKHASNMGGGYLAWVENGFAVNKPQDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="107262" PGL_stop="108041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107262" e_stop="108041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="107262" e_stop="108041" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107262" stop="108041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCACAGAGAATTTTTGGAAATCTTGGCTATTACTCAGCCATAAATTGGTTTTTTCTGATTGGCGCTATAGCTCCTGTATTTGTTTGGCTGTTACAGAAAGCTTTCCCAAACCATCACTGGATTAGATTGATGTCGGTGCCTGTGGTATTAGCCGGAATAATTAAAATACCACCTGCTACTGCTGTCAACTACAACAGTTGGATCATTATTGCATTAGTTTCAGGATTTGTTGTATATCGATACTACAAGAGTTGGTGGAGTCGTCACAATTATGTTTTATCTGGGGCATTAGATGCCGGATTAACATTCATGGGAGTATTATTGTATTTGTGCTTAGGACAGGAGCATGTTAGCCTTCAGTGGTGGGGAAGTCATACAGATACATGCCCTTTGGCTTCTTGTCCAACTGCTAAAGGGATTGTGGTTGACGGGTGTCCTATATTTTAAGCAGATTTGCTGCAGGATATGTGGTGAAGGCCATGGTTCCATCAACGTAGTTCGTCTGGTCATGTCTGTCCCCACTGTTACAAGACTTCTGTTTGTGATCATGGCTCTTGCTTGAGTCGACAGGTTCCTAGGACGTGCCATTAGCAGCAAGAATTGGAGGACTCTATGTAAAAAGTTTTATGATTAGTCCAAGATGTCACAAACTTGTGCCAGAAAATCATGACTCAAGAAAATGCTCCTCCACCTCCTGTGATGAAGTTAGAACTGTTTTGGGACACATACAATACTGTATAATATTTTCATTGTTGATGAATCTCCTTCATGTACGCAA</gDNA_template>
            <first_frame> G  H  R  E  F  L  E  I  L  A  I  T  Q  P  *  I  G  F  F  *  L  A  L  *  L  L  Y  L  F  G  C  Y  R  K  L  S  Q  T  I  T  G  L  D  *  C  R  C  L  W  Y  *  P  E  *  L  K  Y  H  L  L  L  L  S  T  T  T  V  G  S  L  L  H  *  F  Q  D  L  L  Y  I  D  T  T  R  V  G  G  V  V  T  I  M  F  Y  L  G  H  *  M  P  D  *  H  S  W  E  Y  Y  C  I  C  A  *  D  R  S  M  L  A  F  S  G  G  E  V  I  Q  I  H  A  L  W  L  L  V  Q  L  L  K  G  L  W  L  T  G  V  L  Y  F  K  Q  I  C  C  R  I  C  G  E  G  H  G  S  I  N  V  V  R  L  V  M  S  V  P  T  V  T  R  L  L  F  V  I  M  A  L  A  *  V  D  R  F  L  G  R  A  I  S  S  K  N  W  R  T  L  C  K  K  F  Y  D  *  S  K  M  S  Q  T  C  A  R  K  S  *  L  K  K  M  L  L  H  L  L  *  *  S  *  N  C  F  G  T  H  T  I  L  Y  N  I  F  I  V  D  E  S  P  S  C  T  Q </first_frame>
            <second_frame>  V  T  E  N  F  W  K  S  W  L  L  L  S  H  K  L  V  F  S  D  W  R  Y  S  S  C  I  C  L  A  V  T  E  S  F  P  K  P  S  L  D  *  I  D  V  G  A  C  G  I  S  R  N  N  *  N  T  T  C  Y  C  C  Q  L  Q  Q  L  D  H  Y  C  I  S  F  R  I  C  C  I  S  I  L  Q  E  L  V  E  S  S  Q  L  C  F  I  W  G  I  R  C  R  I  N  I  H  G  S  I  I  V  F  V  L  R  T  G  A  C  *  P  S  V  V  G  K  S  Y  R  Y  M  P  F  G  F  L  S  N  C  *  R  D  C  G  *  R  V  S  Y  I  L  S  R  F  A  A  G  Y  V  V  K  A  M  V  P  S  T  *  F  V  W  S  C  L  S  P  L  L  Q  D  F  C  L  *  S  W  L  L  L  E  S  T  G  S  *  D  V  P  L  A  A  R  I  G  G  L  Y  V  K  S  F  M  I  S  P  R  C  H  K  L  V  P  E  N  H  D  S  R  K  C  S  S  T  S  C  D  E  V  R  T  V  L  G  H  I  Q  Y  C  I  I  F  S  L  L  M  N  L  L  H  V  R   </second_frame>
            <third_frame>   S  Q  R  I  F  G  N  L  G  Y  Y  S  A  I  N  W  F  F  L  I  G  A  I  A  P  V  F  V  W  L  L  Q  K  A  F  P  N  H  H  W  I  R  L  M  S  V  P  V  V  L  A  G  I  I  K  I  P  P  A  T  A  V  N  Y  N  S  W  I  I  I  A  L  V  S  G  F  V  V  Y  R  Y  Y  K  S  W  W  S  R  H  N  Y  V  L  S  G  A  L  D  A  G  L  T  F  M  G  V  L  L  Y  L  C  L  G  Q  E  H  V  S  L  Q  W  W  G  S  H  T  D  T  C  P  L  A  S  C  P  T  A  K  G  I  V  V  D  G  C  P  I  F  *  A  D  L  L  Q  D  M  W  *  R  P  W  F  H  Q  R  S  S  S  G  H  V  C  P  H  C  Y  K  T  S  V  C  D  H  G  S  C  L  S  R  Q  V  P  R  T  C  H  *  Q  Q  E  L  E  D  S  M  *  K  V  L  *  L  V  Q  D  V  T  N  L  C  Q  K  I  M  T  Q  E  N  A  P  P  P  P  V  M  K  L  E  L  F  W  D  T  Y  N  T  V  *  Y  F  H  C  *  *  I  S  F  M  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107264" stop="107710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRIFGNLGYYSAINWFFLIGAIAPVFVWLLQKAFPNHHWIRLMSVPVVLAGIIKIPPATAVNYNSWIIIALVSGFVVYRYYKSWWSRHNYVLSGALDAGLTFMGVLLYLCLGQEHVSLQWWGSHTDTCPLASCPTAKGIVVDGCPIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107842" stop="108039"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVPLAARIGGLYVKSFMISPRCHKLVPENHDSRKCSSTSCDEVRTVLGHIQYCIIFSLLMNLLHVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="112074" PGL_stop="110677"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112074" e_stop="110677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="112074" e_stop="110677" e_length="1398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112074" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATTT</gDNA_template>
            <first_frame> L  K  W  L  P  *  K  I  R  P  S  S  T  T  M  M  I  L  T  M  R  K  M  M  K  R  A  V  I  P  R  T  K  P  L  L  M  K  M  T  T  *  M  S  M  R  R  R  R  K  R  T  I  P  L  P  L  L  P  C  P  L  R  T  I  P  S  P  E  R  L  L  *  P  L  S  V  S  L  Q  L  I  H  F  V  L  N  Q  N  E  S  G  S  T  I  S  A  L  L  R  P  R  W  L  W  K  K  K  S  P  *  F  W  M  I  L  A  S  F  F  N  G  C  G  W  M  K  M  R  S  N  C  Y  K  D  F  W  N  T  Q  P  S  A  V  G  *  I  H  L  R  I  I  I  M  I  Q  V  R  S  M  T  K  S  R  T  S  C  S  W  I  S  T  R  I  N  *  *  R  S  *  G  D  *  R  R  S  I  G  Q  *  *  A  R  W  D  L  V  R  N  L  C  L  R  A  L  T  I  K  P  P  S  R  S  L  A  R  S  G  A  M  P  D  Q  L  S  S  V  A  V  V  P  H  H  H  H  Q  Q  M  M  V  D  L  M  M  R  I  H  I  S  T  L  T  T  Q  I  S  L  I  T  P  L  T  S  I  L  I  L  T  G  L  M  L  K  L  L  S  R  K  K  G  L  E  E  E  K  K  N  P  G  I  F  N  S  T  I  I  S  H  L  V  E  E  Q  M  S  F  S  P  Q  L  R  S  R  W  P  P  P  R  P  Q  P  Q  L  Q  L  Q  L  Q  F  L  V  *  S  R  K  L  *  G  A  V  Y  H  P  F  S  R  N  C  L  T  I  *  M  D  L  D  I  L  G  S  E  C  H  W  V  H  P  L  *  *  D  L  G  T  V  *  *  A  V  I  S  I  *  R  R  M  R  N  G  G  S  N  R  F  W  N  W  K  F  I  Q  R  D  *  S  L  F  K  I  K  *  R  H  S  W  K  N  S  D  P  *  T  V  R  P  W  F  T  P  F  L  Y  *  *  N  F  I  I  I  L  V  D  G  *  Y  Y  Q  I  A  K  I  A  N  C  S  I  Y  I  I  V  K  A  V  *  I  F </first_frame>
            <second_frame>  S  N  G  F  R  R  R  S  G  R  R  L  Q  R  *  *  S  *  R  *  G  R  *  *  R  E  R  S  S  P  E  R  S  R  C  *  *  R  *  R  R  R  C  R  *  G  G  G  G  R  G  R  F  H  F  L  S  S  R  A  R  C  E  P  F  R  R  R  R  G  Y  Y  S  R  C  R  C  P  C  N  *  F  T  L  Y  *  T  K  T  R  A  D  Q  R  F  R  R  Y  S  G  H  D  G  C  G  R  K  K  A  L  S  F  G  *  F  S  Q  A  F  S  T  A  V  D  G  *  R  *  D  R  I  V  T  R  I  S  G  I  H  N  P  A  R  W  D  K  F  I  F  A  S  S  S  *  Y  R  C  V  L  *  P  N  Q  E  Q  A  A  V  G  F  Q  Q  E  S  I  S  R  E  A  E  E  I  E  E  E  V  S  D  S  D  E  Q  D  G  I  W  *  G  I  C  V  *  E  P  S  R  S  S  H  L  R  D  L  S  Q  D  L  E  Q  C  R  T  N  C  R  P  *  Q  W  S  P  T  T  T  T  S  R  *  W  W  I  *  *  *  G  F  T  S  Q  P  *  P  R  K  F  H  *  S  H  P  *  L  Q  S  *  S  *  R  V  *  C  *  N  F  *  V  E  K  K  A  S  R  R  R  R  K  T  R  V  Y  S  T  V  L  S  S  V  I  W  W  R  N  K  C  H  S  P  P  N  S  G  L  D  G  R  P  P  G  H  S  H  S  Y  S  C  S  F  N  S  *  F  D  R  G  N  C  E  E  L  S  I  T  H  F  Q  G  I  V  *  Q  F  E  W  I  *  I  F  W  V  R  N  V  I  G  S  I  P  F  S  R  I  W  E  Q  F  N  E  L  *  Y  Q  Y  E  D  G  *  E  M  E  E  A  T  D  S  G  I  G  S  L  F  K  E  I  R  A  C  S  R  S  N  K  G  T  V  G  R  T  Q  I  H  E  Q  L  D  H  G  L  P  L  S  Y  T  S  R  I  L  *  *  F  L  L  M  D  D  I  T  R  L  R  K  *  L  I  V  L  F  T  *  L  *  R  L  F  R  Y   </second_frame>
            <third_frame>   Q  M  A  S  V  E  D  Q  A  V  V  Y  N  D  D  D  L  D  D  E  E  D  D  E  E  S  G  H  P  Q  N  E  A  V  V  D  E  D  D  D  V  D  V  D  E  E  E  E  E  E  D  D  S  T  S  S  P  P  V  P  V  A  N  H  S  V  A  G  E  V  T  I  A  V  V  G  V  P  A  T  D  S  L  C  I  E  P  K  R  E  R  I  N  D  F  G  V  T  P  A  T  M  V  V  E  E  K  K  P  L  V  L  D  D  S  R  K  L  F  Q  R  L  W  M  D  E  D  E  I  E  L  L  Q  G  F  L  E  Y  T  T  Q  R  G  G  I  N  S  S  S  H  H  H  H  D  T  G  A  F  Y  D  Q  I  K  N  K  L  Q  L  D  F  N  K  N  Q  L  V  E  K  L  R  R  L  K  K  K  Y  R  T  V  M  S  K  M  G  S  G  K  E  F  V  F  K  S  P  H  D  Q  A  T  F  E  I  S  R  K  I  W  S  N  A  G  P  I  V  V  R  S  S  G  P  P  P  P  P  P  A  D  D  G  G  F  D  D  E  D  S  H  L  N  L  N  H  A  N  F  I  D  H  T  P  N  F  N  L  N  P  N  G  F  D  V  K  T  S  K  S  K  K  R  P  R  G  G  E  E  K  P  G  Y  I  Q  Q  Y  Y  H  Q  S  S  G  G  G  T  N  V  I  L  P  P  T  P  V  S  M  A  A  P  Q  A  T  A  T  A  T  A  A  A  S  I  P  S  L  I  E  E  T  V  R  S  C  L  S  P  I  F  K  E  L  F  N  N  L  N  G  S  R  Y  S  G  F  G  M  S  L  G  P  S  P  L  V  G  F  G  N  S  L  M  S  C  D  I  N  M  K  T  D  E  K  W  R  K  Q  Q  I  L  E  L  E  V  Y  S  K  R  L  E  L  V  Q  D  Q  I  K  A  Q  L  E  E  L  R  S  M  N  S  *  T  M  V  Y  P  F  L  I  L  V  E  F  Y  N  N  S  C  *  W  M  I  L  P  D  C  E  N  S  *  L  F  Y  L  H  N  C  E  G  C  L  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0009K06.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112072" stop="110804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMASVEDQAVVYNDDDLDDEEDDEESGHPQNEAVVDEDDDVDVDEEEEEEDDSTSSPPVPVANHSVAGEVTIAVVGVPATDSLCIEPKRERINDFGVTPATMVVEEKKPLVLDDSRKLFQRLWMDEDEIELLQGFLEYTTQRGGINSSSHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQATFEISRKIWSNAGPIVVRSSGPPPPPPADDGGFDDEDSHLNLNHANFIDHTPNFNLNPNGFDVKTSKSKKRPRGGEEKPGYIQQYYHQSSGGGTNVILPPTPVSMAAPQATATATAAASIPSLIEETVRSCLSPIFKELFNNLNGSRYSGFGMSLGPSPLVGFGNSLMSCDINMKTDEKWRKQQILELEVYSKRLELVQDQIKAQLEELRSMNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 50504 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2195 bytes was the average size of a spliced alignment
$ 26088 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:02:02
-->
